AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049739

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049739.t1 MTR_4g056390 97.606 543 13 0 1 543 1 543 0.0 1109
MS.gene049739.t1 MTR_2g084555 77.095 537 114 4 8 542 9 538 0.0 816
MS.gene049739.t1 MTR_1g061690 67.736 530 165 2 7 536 12 535 0.0 761
MS.gene049739.t1 MTR_5g024270 50.540 463 164 5 18 479 17 415 6.17e-164 473
MS.gene049739.t1 MTR_8g073250 47.835 508 176 7 20 526 19 438 8.96e-162 468
MS.gene049739.t1 MTR_5g024270 49.487 390 132 5 18 406 17 342 5.01e-128 379
MS.gene049739.t1 MTR_3g076540 36.943 157 92 4 24 180 80 229 5.70e-24 104
MS.gene049739.t1 MTR_3g076540 30.769 169 100 3 319 478 259 419 1.30e-17 85.9
MS.gene049739.t1 MTR_3g076540 36.943 157 92 4 24 180 80 229 7.09e-24 104
MS.gene049739.t1 MTR_3g076540 29.379 177 100 4 319 478 259 427 4.13e-15 78.2
MS.gene049739.t1 MTR_3g109390 35.227 176 105 5 5 180 43 209 4.03e-23 100
MS.gene049739.t1 MTR_3g109390 40.196 102 53 2 319 420 238 331 1.22e-17 84.7
MS.gene049739.t1 MTR_4g104620 36.306 157 93 4 24 180 84 233 4.08e-23 102
MS.gene049739.t1 MTR_4g104620 29.586 169 102 3 319 478 263 423 8.89e-16 80.1
MS.gene049739.t1 MTR_3g109390 35.227 176 105 5 5 180 43 209 4.70e-23 102
MS.gene049739.t1 MTR_3g109390 31.609 174 92 3 319 478 238 398 2.12e-22 99.8
MS.gene049739.t1 MTR_3g109390 35.227 176 105 5 5 180 43 209 5.00e-23 101
MS.gene049739.t1 MTR_3g109390 32.184 174 89 4 319 478 238 396 8.12e-22 98.2
MS.gene049739.t1 MTR_3g109390 35.227 176 105 5 5 180 21 187 7.42e-23 100
MS.gene049739.t1 MTR_3g109390 31.609 174 92 3 319 478 216 376 1.55e-22 100
MS.gene049739.t1 MTR_3g076540 37.500 152 88 4 29 180 3 147 8.26e-23 100
MS.gene049739.t1 MTR_3g076540 30.769 169 100 3 319 478 177 337 5.93e-18 85.9
MS.gene049739.t1 MTR_3g109390 31.609 174 92 3 319 478 225 385 1.91e-22 99.8
MS.gene049739.t1 MTR_3g109390 34.868 152 93 3 29 180 51 196 2.35e-20 93.6
MS.gene049739.t1 MTR_4g104620 38.571 140 80 3 41 180 6 139 3.36e-22 98.2
MS.gene049739.t1 MTR_4g104620 29.586 169 102 3 319 478 169 329 3.84e-16 80.1
MS.gene049739.t1 MTR_3g109390 31.609 174 92 3 319 478 247 407 3.98e-22 99.4
MS.gene049739.t1 MTR_3g109390 34.868 152 93 3 29 180 73 218 3.56e-20 93.2
MS.gene049739.t1 MTR_8g070930 37.589 141 82 3 39 178 139 274 1.55e-21 99.4
MS.gene049739.t1 MTR_8g070930 31.280 211 96 5 317 484 283 487 1.74e-17 86.7
MS.gene049739.t1 MTR_3g086530 31.765 170 106 5 14 180 66 228 2.28e-21 95.5
MS.gene049739.t1 MTR_3g086530 31.765 170 106 5 14 180 66 228 4.63e-21 95.5
MS.gene049739.t1 MTR_3g086530 31.405 121 70 2 319 439 260 367 2.52e-14 75.1
MS.gene049739.t1 MTR_3g076540 37.500 136 79 3 45 180 1 130 8.02e-21 94.0
MS.gene049739.t1 MTR_3g076540 30.769 169 100 3 319 478 160 320 5.90e-18 85.5
MS.gene049739.t1 MTR_3g086530 31.765 170 106 5 14 180 66 228 9.22e-21 95.1
MS.gene049739.t1 MTR_3g086530 26.554 177 101 4 319 480 260 422 2.14e-15 79.0
MS.gene049739.t1 MTR_4g104620 38.235 136 78 3 45 180 1 130 9.58e-21 94.0
MS.gene049739.t1 MTR_4g104620 29.586 169 102 3 319 478 160 320 4.35e-16 80.1
MS.gene049739.t1 MTR_6g074905 31.548 168 101 4 317 479 1007 1165 3.80e-20 95.1
MS.gene049739.t1 MTR_5g082700 31.638 177 103 6 317 485 546 712 7.44e-20 94.0
MS.gene049739.t1 MTR_5g082700 37.162 148 84 3 37 180 401 543 6.04e-16 81.6
MS.gene049739.t1 MTR_0349s0030 30.928 194 109 5 291 479 112 285 9.42e-20 90.1
MS.gene049739.t1 MTR_1g111180 36.264 182 94 7 319 485 822 996 7.84e-18 87.8
MS.gene049739.t1 MTR_1g111180 32.065 184 103 7 1 178 647 814 5.17e-17 85.1
MS.gene049739.t1 MTR_1g111180 36.264 182 94 7 319 485 823 997 7.84e-18 87.8
MS.gene049739.t1 MTR_1g111180 32.065 184 103 7 1 178 648 815 5.09e-17 85.1
MS.gene049739.t1 MTR_3g086530 26.404 178 102 4 318 480 87 250 3.66e-16 79.0
MS.gene049739.t1 MTR_5g082700 37.162 148 84 3 37 180 401 543 4.42e-16 81.6
MS.gene049739.t1 MTR_3g086530 35.345 116 69 3 65 180 2 111 6.75e-16 79.0
MS.gene049739.t1 MTR_3g086530 26.554 177 101 4 319 480 143 305 8.05e-16 79.0
MS.gene049739.t1 MTR_5g082700 37.162 148 84 3 37 180 401 543 7.01e-16 81.3
MS.gene049739.t1 MTR_5g082700 33.621 116 69 3 317 430 546 655 6.49e-13 72.0
MS.gene049739.t1 MTR_4g087620 32.020 203 102 10 282 480 172 342 5.15e-14 74.3
MS.gene049739.t1 MTR_8g080190 30.583 206 125 6 317 518 522 713 8.21e-13 71.6
MS.gene049739.t1 MTR_8g098845 31.220 205 102 9 282 480 169 340 8.52e-13 70.5
MS.gene049739.t1 MTR_3g085650 31.088 193 115 6 317 505 553 731 1.19e-12 71.2
MS.gene049739.t1 MTR_3g085650 31.088 193 115 6 317 505 553 731 1.27e-12 71.2
MS.gene049739.t1 MTR_3g085650 31.088 193 115 6 317 505 553 731 1.34e-12 70.9
MS.gene049739.t1 MTR_2g021330 32.727 220 116 12 308 517 155 352 1.56e-12 70.5
MS.gene049739.t1 MTR_4g061320 31.188 202 106 8 282 480 157 328 1.72e-12 69.3
MS.gene049739.t1 MTR_4g117490 32.877 219 117 11 308 517 155 352 1.76e-12 70.5
MS.gene049739.t1 MTR_8g028720 30.693 202 105 8 282 479 154 324 2.63e-12 68.9
MS.gene049739.t1 MTR_2g021330 32.727 220 116 12 308 517 155 352 2.66e-12 69.3
MS.gene049739.t1 MTR_8g106960 30.594 219 122 10 308 517 248 445 5.26e-12 68.9
MS.gene049739.t1 MTR_8g106960 30.594 219 122 10 308 517 248 445 5.89e-12 68.6
MS.gene049739.t1 MTR_3g089510 31.858 226 121 9 308 524 155 356 6.54e-12 68.6
MS.gene049739.t1 MTR_4g117490 32.877 219 117 11 308 517 155 352 6.63e-12 68.2
MS.gene049739.t1 MTR_3g089510 31.858 226 121 9 308 524 143 344 7.16e-12 68.6
MS.gene049739.t1 MTR_6g074870 31.683 101 63 1 319 419 240 334 1.60e-11 66.2
MS.gene049739.t1 MTR_6g074750 42.857 56 32 0 319 374 58 113 4.68e-11 60.5
MS.gene049739.t1 MTR_5g010030 29.703 202 109 8 282 480 158 329 5.12e-11 65.1
MS.gene049739.t1 MTR_2g072840 31.925 213 114 9 308 510 155 346 5.25e-11 65.9
MS.gene049739.t1 MTR_7g078690 29.353 201 109 8 282 479 155 325 5.28e-11 65.1
MS.gene049739.t1 MTR_2g072840 30.660 212 118 8 308 510 65 256 6.04e-11 65.5
MS.gene049739.t1 MTR_2g072840 31.925 213 114 9 308 510 155 346 6.68e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049739.t1 AT3G53030 66.729 538 140 7 1 527 1 510 0.0 714
MS.gene049739.t1 AT3G44850 68.762 525 154 4 8 529 14 531 0.0 709
MS.gene049739.t1 AT5G22840 64.326 527 163 4 8 529 14 520 0.0 701
MS.gene049739.t1 AT4G35500 50.000 482 164 6 20 498 19 426 1.55e-165 477
MS.gene049739.t1 AT4G35500 48.033 483 173 7 20 498 19 427 7.78e-156 452
MS.gene049739.t1 AT2G17530 59.487 195 77 1 20 212 19 213 5.35e-79 252
MS.gene049739.t1 AT2G17530 64.286 98 35 0 308 405 245 342 3.48e-38 144
MS.gene049739.t1 AT2G17530 59.487 195 77 1 20 212 19 213 1.43e-77 251
MS.gene049739.t1 AT2G17530 61.047 172 67 0 308 479 245 416 1.11e-74 244
MS.gene049739.t1 AT2G17530 59.487 195 77 1 20 212 19 213 1.43e-77 251
MS.gene049739.t1 AT2G17530 61.047 172 67 0 308 479 245 416 1.11e-74 244
MS.gene049739.t1 AT4G24740 37.209 172 100 5 24 195 84 247 2.02e-25 107
MS.gene049739.t1 AT4G24740 37.209 172 100 5 24 195 84 247 3.54e-25 107
MS.gene049739.t1 AT4G24740 40.230 87 46 1 319 405 263 343 1.31e-14 75.9
MS.gene049739.t1 AT4G24740 37.209 172 100 5 24 195 46 209 5.30e-25 107
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 225 386 2.58e-18 87.4
MS.gene049739.t1 AT4G24740 37.209 172 100 5 24 195 84 247 7.26e-25 107
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 263 424 3.31e-18 87.4
MS.gene049739.t1 AT4G32660 37.107 159 93 4 22 180 55 206 5.49e-24 103
MS.gene049739.t1 AT4G32660 40.594 101 53 3 319 418 235 329 7.73e-15 76.6
MS.gene049739.t1 AT4G32660 37.107 159 93 4 22 180 47 198 6.84e-24 104
MS.gene049739.t1 AT4G32660 33.140 172 97 5 319 480 227 390 7.17e-19 89.4
MS.gene049739.t1 AT4G32660 37.107 159 93 4 22 180 55 206 7.52e-24 104
MS.gene049739.t1 AT4G32660 33.140 172 97 5 319 480 235 398 7.48e-19 89.4
MS.gene049739.t1 AT5G35980 37.584 149 87 3 39 186 87 230 3.57e-23 104
MS.gene049739.t1 AT5G35980 29.762 252 118 7 317 521 230 469 1.65e-18 90.1
MS.gene049739.t1 AT5G35980 37.584 149 87 3 39 186 122 265 3.60e-23 104
MS.gene049739.t1 AT5G35980 32.558 215 89 6 317 484 265 470 1.36e-18 90.1
MS.gene049739.t1 AT5G35980 37.584 149 87 3 39 186 122 265 5.72e-23 103
MS.gene049739.t1 AT5G35980 29.762 252 118 7 317 521 265 504 1.24e-18 90.1
MS.gene049739.t1 AT4G24740 37.748 151 87 4 45 195 1 144 8.93e-23 97.8
MS.gene049739.t1 AT4G24740 40.230 87 46 1 319 405 160 240 4.93e-15 75.5
MS.gene049739.t1 AT4G24740 37.748 151 87 4 45 195 1 144 2.30e-22 98.6
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 160 321 1.22e-18 87.4
MS.gene049739.t1 AT4G24740 37.748 151 87 4 45 195 1 144 2.30e-22 98.6
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 160 321 1.22e-18 87.4
MS.gene049739.t1 AT4G24740 37.748 151 87 4 45 195 1 144 2.30e-22 98.6
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 160 321 1.22e-18 87.4
MS.gene049739.t1 AT1G73460 32.738 168 99 4 317 479 1003 1161 3.52e-22 101
MS.gene049739.t1 AT1G73460 35.135 148 87 4 37 180 856 998 6.51e-14 75.5
MS.gene049739.t1 AT1G73460 32.738 168 99 4 317 479 1003 1161 3.52e-22 101
MS.gene049739.t1 AT1G73460 35.135 148 87 4 37 180 856 998 6.51e-14 75.5
MS.gene049739.t1 AT1G73450 32.738 168 99 4 317 479 986 1144 3.56e-22 101
MS.gene049739.t1 AT1G73450 35.135 148 87 4 37 180 839 981 5.69e-14 75.5
MS.gene049739.t1 AT3G53570 35.669 157 94 4 24 180 101 250 1.93e-21 97.8
MS.gene049739.t1 AT3G53570 30.857 175 97 5 318 479 281 444 1.84e-19 91.7
MS.gene049739.t1 AT3G53570 35.669 157 94 4 24 180 101 250 1.93e-21 97.8
MS.gene049739.t1 AT3G53570 30.857 175 97 5 318 479 281 444 1.84e-19 91.7
MS.gene049739.t1 AT3G53570 35.669 157 94 4 24 180 101 250 1.93e-21 97.8
MS.gene049739.t1 AT3G53570 30.857 175 97 5 318 479 281 444 1.84e-19 91.7
MS.gene049739.t1 AT3G53570 35.669 157 94 4 24 180 87 236 2.03e-21 97.4
MS.gene049739.t1 AT3G53570 30.857 175 97 5 318 479 267 430 2.03e-19 91.7
MS.gene049739.t1 AT3G53570 35.669 157 94 4 24 180 87 236 2.03e-21 97.4
MS.gene049739.t1 AT3G53570 30.857 175 97 5 318 479 267 430 2.03e-19 91.7
MS.gene049739.t1 AT2G40120 32.934 167 102 4 318 481 407 566 2.45e-21 98.2
MS.gene049739.t1 AT2G40120 35.135 148 87 3 37 180 259 401 2.20e-14 76.3
MS.gene049739.t1 AT3G17750 31.548 168 101 4 317 479 972 1130 3.48e-20 95.5
MS.gene049739.t1 AT3G17750 35.135 148 87 4 37 180 825 967 1.29e-13 74.7
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 57 218 1.52e-19 88.2
MS.gene049739.t1 AT4G24740 30.636 173 97 5 319 479 57 218 1.52e-19 88.2
MS.gene049739.t1 AT4G32660 32.948 173 98 5 319 481 123 287 2.83e-19 89.0
MS.gene049739.t1 AT4G32660 37.000 100 57 3 81 180 1 94 9.81e-13 69.3
MS.gene049739.t1 AT3G25840 33.871 186 86 8 318 480 763 934 1.79e-17 86.7
MS.gene049739.t1 AT3G25840 32.716 162 96 6 24 179 603 757 2.02e-14 77.0
MS.gene049739.t1 AT3G25840 34.054 185 85 8 319 480 502 672 2.21e-17 86.3
MS.gene049739.t1 AT3G25840 31.677 161 99 5 24 179 341 495 5.32e-14 75.5
MS.gene049739.t1 AT3G53640 31.844 179 98 6 319 480 470 641 9.82e-17 84.0
MS.gene049739.t1 AT3G53640 30.220 182 107 6 3 179 297 463 9.96e-14 74.3
MS.gene049739.t1 AT1G13350 33.540 161 96 5 24 179 428 582 1.68e-16 83.6
MS.gene049739.t1 AT1G13350 30.899 178 101 5 319 480 589 760 3.94e-16 82.4
MS.gene049739.t1 AT1G13350 33.540 161 96 5 24 179 455 609 2.13e-16 83.2
MS.gene049739.t1 AT1G13350 30.899 178 101 5 319 480 616 787 4.36e-16 82.0
MS.gene049739.t1 AT1G13350 33.540 161 96 5 24 179 501 655 3.51e-16 82.4
MS.gene049739.t1 AT1G13350 30.899 178 101 5 319 480 662 833 5.57e-16 82.0
MS.gene049739.t1 AT3G59790 29.060 234 121 10 282 506 177 374 2.29e-13 72.4
MS.gene049739.t1 AT3G14720 31.132 212 117 8 308 510 155 346 6.14e-13 72.0
MS.gene049739.t1 AT3G14720 31.604 212 116 8 308 510 155 346 1.52e-12 70.1
MS.gene049739.t1 AT3G14720 31.604 212 116 8 308 510 155 346 1.52e-12 70.1
MS.gene049739.t1 AT1G01560 29.851 201 108 9 282 479 157 327 2.17e-12 69.3
MS.gene049739.t1 AT3G45640 30.693 202 105 9 282 479 155 325 4.14e-12 68.6
MS.gene049739.t1 AT4G01370 30.348 201 107 9 282 479 160 330 7.01e-12 67.8
MS.gene049739.t1 AT2G01450 31.797 217 117 11 308 514 146 341 7.09e-12 68.2
MS.gene049739.t1 AT2G01450 31.797 217 117 11 308 514 146 341 7.09e-12 68.2
MS.gene049739.t1 AT2G01450 31.797 217 117 11 308 514 146 341 7.09e-12 68.2
MS.gene049739.t1 AT2G01450 31.797 217 117 11 308 514 146 341 7.09e-12 68.2
MS.gene049739.t1 AT2G43790 30.542 203 105 9 282 480 180 350 2.31e-11 66.2
MS.gene049739.t1 AT3G18040 30.594 219 122 10 308 517 65 262 4.32e-11 65.5
MS.gene049739.t1 AT3G18040 30.909 220 120 11 308 517 262 459 5.24e-11 65.9
MS.gene049739.t1 AT3G18040 30.909 220 120 11 308 517 153 350 5.28e-11 65.5
MS.gene049739.t1 AT1G76540 28.655 171 98 5 316 482 158 308 5.34e-11 64.3
MS.gene049739.t1 AT3G18040 30.909 220 120 11 308 517 148 345 5.41e-11 65.5
MS.gene049739.t1 AT2G46070 29.851 201 108 9 282 479 158 328 6.55e-11 64.7
MS.gene049739.t1 AT2G46070 29.851 201 108 9 282 479 192 362 7.26e-11 64.7
MS.gene049739.t1 AT3G18040 30.594 219 122 10 308 517 262 459 7.72e-11 65.5

Find 124 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATCCAAAACAGTAAAAT+TGG 0.157415 4.2:+47053696 MS.gene049739:CDS
TTGGATCACTTCAAGCATTC+AGG 0.225873 4.2:+47053381 MS.gene049739:CDS
AACTTTACTCGAAGAGCTAT+TGG 0.245290 4.2:-47053892 None:intergenic
CATCTATGTTGATGACTTTA+CGG 0.264587 4.2:-47056190 None:intergenic
AAGTGCAAGCTGGTTGATTT+TGG 0.274103 4.2:+47054017 MS.gene049739:CDS
TTTCTACTGTTTGGCTTGCT+TGG 0.286757 4.2:+47051769 MS.gene049739:CDS
TTCTACTGTTTGGCTTGCTT+GGG 0.313798 4.2:+47051770 MS.gene049739:CDS
TTCTTATGACCATCGTTTCC+TGG 0.324044 4.2:-47053948 None:intergenic
AGGTGTCCTGAGGTTCTTCT+TGG 0.337399 4.2:+47054095 MS.gene049739:CDS
AAGGAAAGTCCAGAGGAATC+TGG 0.359071 4.2:+47053795 MS.gene049739:CDS
GTGAGGAATATATCTATTAA+TGG 0.359774 4.2:+47056138 MS.gene049739:CDS
ACATCCATGAGTTGCGATTC+TGG 0.361691 4.2:+47055848 MS.gene049739:CDS
AAAATGTGTTGTGAAGCTTT+TGG 0.362109 4.2:+47053362 MS.gene049739:CDS
TGTTCAATCTAAGCTTGGTT+GGG 0.363107 4.2:+47051740 MS.gene049739:CDS
ATCTATGTTGATGACTTTAC+GGG 0.386093 4.2:-47056189 None:intergenic
GATTTCCTTGGATCCTTTGA+CGG 0.395707 4.2:-47053618 None:intergenic
ACTTTACTCGAAGAGCTATT+GGG 0.402890 4.2:-47053891 None:intergenic
GCATTGATGATGGAACTTCT+TGG 0.403191 4.2:+47055503 MS.gene049739:CDS
TGGATCACTTCAAGCATTCA+GGG 0.408279 4.2:+47053382 MS.gene049739:CDS
ATATTCAAACAAGGCAATAT+AGG 0.414165 4.2:+47054075 MS.gene049739:CDS
ACAGTGGTGACAACTATGAT+AGG 0.429417 4.2:+47054204 MS.gene049739:CDS
GATAGTCACTATATTTGATA+AGG 0.433753 4.2:-47053461 None:intergenic
GGACAAGGAAAAGGCCGAGC+AGG 0.434320 4.2:+47056098 MS.gene049739:CDS
ATCTGCTTTGAGCTTGCCAC+TGG 0.441460 4.2:+47054161 MS.gene049739:CDS
TTGGTGTTTGGAAGGATAAG+TGG 0.442157 4.2:-47053648 None:intergenic
TTCAAGCATTCAGGGCCTAA+TGG 0.442522 4.2:+47053390 MS.gene049739:CDS
TTCTTCTCCTGGTTCTTCGT+CGG 0.444681 4.2:-47053729 None:intergenic
TTGTTACAATTATCCTGCTC+AGG 0.444711 4.2:-47053834 None:intergenic
AGGAAAGTCCAGAGGAATCT+GGG 0.452844 4.2:+47053796 MS.gene049739:CDS
TCAAAGGATCCAAGGAAATC+AGG 0.454737 4.2:+47053621 MS.gene049739:CDS
TTGAAGTGAATGGAGAGAAA+AGG 0.457401 4.2:+47051612 None:intergenic
AAATGAAGGGAAAGGGTAAG+AGG 0.459156 4.2:+47053751 MS.gene049739:CDS
GAATGCTCATTGATTGCATC+AGG 0.462979 4.2:-47056057 None:intergenic
TAATGGCGTGCATGTGTGTA+TGG 0.464665 4.2:+47053407 MS.gene049739:CDS
GTTCAATCTAAGCTTGGTTG+GGG 0.469698 4.2:+47051741 MS.gene049739:CDS
CAATCATCCCCAGATTCCTC+TGG 0.469706 4.2:-47053804 None:intergenic
GAATGAAGTAACACATTCTC+AGG 0.471207 4.2:-47053585 None:intergenic
TGCCAGCAGCTTCTTTCTCA+TGG 0.472338 4.2:-47053982 None:intergenic
TTATCCAAAACAGTAAAATT+GGG 0.472361 4.2:+47053697 MS.gene049739:CDS
GATAACTTTCCTACCTTGCT+AGG 0.473221 4.2:-47055533 None:intergenic
TGTTGATGACTTTACGGGTC+GGG 0.473456 4.2:-47056184 None:intergenic
TCAGGGTCAAAATCAAGTAT+TGG 0.476440 4.2:-47055946 None:intergenic
TATGTTGTTCAATCTAAGCT+TGG 0.476981 4.2:+47051735 MS.gene049739:CDS
AGTGGAGCACCTGATTTCCT+TGG 0.486223 4.2:-47053630 None:intergenic
ATAGTCACTATATTTGATAA+GGG 0.487347 4.2:-47053460 None:intergenic
TTCCTGCAGATTGCACTTGG+TGG 0.488149 4.2:+47055781 MS.gene049739:intron
TTGTTCAATCTAAGCTTGGT+TGG 0.493944 4.2:+47051739 MS.gene049739:CDS
AATGAAGGGAAAGGGTAAGA+GGG 0.494221 4.2:+47053752 MS.gene049739:CDS
GGATCATCTGGCATTGATGA+TGG 0.496553 4.2:+47055493 MS.gene049739:intron
GAACCAGGAGAAGAAAATGA+AGG 0.498186 4.2:+47053737 MS.gene049739:CDS
GCAAAGGACCACATATCTGC+TGG 0.503873 4.2:-47054134 None:intergenic
ATGAAGGTACTGAACACTAT+AGG 0.505840 4.2:+47051661 MS.gene049739:CDS
TGGAGATCCGACGAAGAACC+AGG 0.506120 4.2:+47053722 MS.gene049739:CDS
GAGAAGGAAGGACAAGGAAA+AGG 0.507421 4.2:+47056089 MS.gene049739:CDS
CTCAGTGCCTTACCCATCCA+TGG 0.510371 4.2:+47055986 MS.gene049739:CDS
TCGGCCAGAATCGCAACTCA+TGG 0.510515 4.2:-47055852 None:intergenic
AGCATTCATTTGAAAAGAGA+AGG 0.511517 4.2:+47056073 MS.gene049739:CDS
CAAAACAGTAAAATTGGGAA+TGG 0.514220 4.2:+47053702 MS.gene049739:CDS
TATTTCCTGCAGATTGCACT+TGG 0.517054 4.2:+47055778 MS.gene049739:intron
CAAAATCAAGTATTGGAAGA+AGG 0.523920 4.2:-47055939 None:intergenic
AAAGGCCGAGCAGGAGTTGG+TGG 0.524206 4.2:+47056107 MS.gene049739:CDS
ATCAACACAGACCACTGAAA+AGG 0.529361 4.2:+47053917 MS.gene049739:CDS
ACTGAAAAGGACCTTGCACC+AGG 0.530605 4.2:+47053930 MS.gene049739:CDS
GGCTCAAGGCTGTGTTGAGA+AGG 0.533237 4.2:+47053776 MS.gene049739:CDS
GAGCAGGAGTTGGTGGAAGT+TGG 0.533978 4.2:+47056114 MS.gene049739:CDS
CACTTATCCATGGATGGGTA+AGG 0.534938 4.2:-47055993 None:intergenic
TGCTTGGGATACTCTCAAAT+CGG 0.534960 4.2:+47051785 MS.gene049739:CDS
GACCATCGTTTCCTGGTGCA+AGG 0.537763 4.2:-47053941 None:intergenic
GGAAAAGGCCGAGCAGGAGT+TGG 0.538465 4.2:+47056104 MS.gene049739:CDS
GACCTGCACTTATCCATGGA+TGG 0.540258 4.2:-47055999 None:intergenic
TGATTGTAAAGAACCTGAGC+AGG 0.542237 4.2:+47053821 MS.gene049739:CDS
ACCCATCCATGGATAAGTGC+AGG 0.542820 4.2:+47055997 MS.gene049739:CDS
TTCACTGATTGATCCGTCAA+AGG 0.543734 4.2:+47053605 MS.gene049739:CDS
ATACACACATGCACGCCATT+AGG 0.544060 4.2:-47053405 None:intergenic
AAAACATATCTCTTTAACCA+TGG 0.544485 4.2:-47053499 None:intergenic
ACACTACACTGAAGCTGCAA+TGG 0.544944 4.2:+47053290 MS.gene049739:CDS
GAGAAGAAAATGAAGGGAAA+GGG 0.549231 4.2:+47053744 MS.gene049739:CDS
CTTGGTGATGCTTTCAACAA+TGG 0.554279 4.2:+47051708 MS.gene049739:CDS
AACCAGGAGAAGAAAATGAA+GGG 0.561030 4.2:+47053738 MS.gene049739:CDS
TTCATTTGAAAAGAGAAGGA+AGG 0.562994 4.2:+47056077 MS.gene049739:CDS
GCAGCTTCTTTCTCATGGAA+CGG 0.565762 4.2:-47053977 None:intergenic
CGAGGACCTGCACTTATCCA+TGG 0.565971 4.2:-47056003 None:intergenic
GGAGAAGAAAATGAAGGGAA+AGG 0.568087 4.2:+47053743 MS.gene049739:CDS
TTAGAACCAAGAAGAACCTC+AGG 0.569982 4.2:-47054101 None:intergenic
GGGTACCATGCTGTGAAACT+TGG 0.570597 4.2:+47051690 MS.gene049739:CDS
TTCCATGAGAAAGAAGCTGC+TGG 0.571340 4.2:+47053980 MS.gene049739:CDS
ACCTGCACTTATCCATGGAT+GGG 0.571534 4.2:-47055998 None:intergenic
ACTCAACTCCAGCAGATATG+TGG 0.578886 4.2:+47054126 MS.gene049739:CDS
TGTTGATCTTAAGTGCAAGC+TGG 0.579496 4.2:+47054007 MS.gene049739:CDS
AAGGGTAAGAGGGTGGCTCA+AGG 0.581871 4.2:+47053762 MS.gene049739:CDS
AGTGAGGGCTCAAGAGTTCG+AGG 0.586270 4.2:-47056021 None:intergenic
ATTCTCAAACAAATTGAAGA+GGG 0.586563 4.2:+47053324 MS.gene049739:CDS
TCGTGGAGTTCCTCTCTCCA+TGG 0.586905 4.2:+47053482 MS.gene049739:CDS
TCAATAGACATGGTGACTTG+AGG 0.591641 4.2:+47055824 MS.gene049739:CDS
CTGAACACTATAGGCGTGGT+GGG 0.591727 4.2:+47051670 MS.gene049739:CDS
CAGTGGTGACAACTATGATA+GGG 0.596335 4.2:+47054205 MS.gene049739:CDS
CTCAAAGCAGATGCAAGCAA+AGG 0.596681 4.2:-47054150 None:intergenic
GATTCTCAAACAAATTGAAG+AGG 0.602574 4.2:+47053323 MS.gene049739:CDS
GATTACAGTTCAGAAGATGA+AGG 0.613227 4.2:+47051645 MS.gene049739:CDS
TTGATCCGTCAAAGGATCCA+AGG 0.613694 4.2:+47053613 MS.gene049739:CDS
GTAAGGCACTGAGCAGCTGT+TGG 0.614457 4.2:-47055976 None:intergenic
AACTTCCACCAACTCCTGCT+CGG 0.617085 4.2:-47056112 None:intergenic
TCTTGGAAAGATGCCTAGCA+AGG 0.623101 4.2:+47055520 MS.gene049739:CDS
GACCTTGCACCAGGAAACGA+TGG 0.630623 4.2:+47053939 MS.gene049739:CDS
ATCAAATATAGTGACTATCG+TGG 0.632403 4.2:+47053465 MS.gene049739:CDS
ATGTTGATGACTTTACGGGT+CGG 0.635713 4.2:-47056185 None:intergenic
TGACAACTATGATAGGGATG+AGG 0.636106 4.2:+47054211 MS.gene049739:CDS
ATCTCTTTAACCATGGAGAG+AGG 0.638691 4.2:-47053492 None:intergenic
TGAAAAGAGAAGGAAGGACA+AGG 0.644229 4.2:+47056083 MS.gene049739:CDS
GAAGGGAAAGGGTAAGAGGG+TGG 0.647195 4.2:+47053755 MS.gene049739:CDS
CATCACCAAGTTTCACAGCA+TGG 0.653174 4.2:-47051695 None:intergenic
ACTGAACACTATAGGCGTGG+TGG 0.658178 4.2:+47051669 MS.gene049739:CDS
AGGTTGTGTACTAGTCAGTG+AGG 0.667251 4.2:-47056037 None:intergenic
GGTTGTGTACTAGTCAGTGA+GGG 0.667334 4.2:-47056036 None:intergenic
GGAAAGTCCAGAGGAATCTG+GGG 0.668122 4.2:+47053797 MS.gene049739:CDS
GGGTGAGAAGATTATCACCA+AGG 0.668408 4.2:-47053440 None:intergenic
GATAATGTCATTATTAGACA+CGG 0.679067 4.2:-47053679 None:intergenic
GGTACTGAACACTATAGGCG+TGG 0.685157 4.2:+47051666 MS.gene049739:CDS
TCACAAATGATATTCAAACA+AGG 0.699139 4.2:+47054066 MS.gene049739:CDS
TGAACAAGATGCAAATGACA+TGG 0.700027 4.2:+47055909 MS.gene049739:CDS
AGTTGGTGGAAGTTGGTGTG+AGG 0.701503 4.2:+47056121 MS.gene049739:CDS
TGTTGAGAAGGAAAGTCCAG+AGG 0.713136 4.2:+47053788 MS.gene049739:CDS
TCATAGTTGTCACCACTGTG+AGG 0.714384 4.2:-47054200 None:intergenic
AAGGCAATATAGGTGTCCTG+AGG 0.731682 4.2:+47054085 MS.gene049739:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTTTTTTTTAAA+TGG - chr4.2:47052791-47052810 None:intergenic 0.0%
!! AATATAAACTTTATATGATA+TGG - chr4.2:47055281-47055300 None:intergenic 10.0%
!! ATATAAACTTTATATGATAT+GGG - chr4.2:47055280-47055299 None:intergenic 10.0%
!! TAATGTCTTTAAATTAAAAA+AGG + chr4.2:47052593-47052612 MS.gene049739:intron 10.0%
!! TTAAAAAAAACAAAACAATA+GGG + chr4.2:47055698-47055717 MS.gene049739:intron 10.0%
!! AAAAAGTAATTTACTAAAGT+CGG - chr4.2:47054716-47054735 None:intergenic 15.0%
!! AACAAAAACAACAAAAAAAA+AGG - chr4.2:47051848-47051867 None:intergenic 15.0%
!! ATAATTTATAGTTTGACAAT+GGG + chr4.2:47054866-47054885 MS.gene049739:intron 15.0%
!! CTTAAAAAAAACAAAACAAT+AGG + chr4.2:47055697-47055716 MS.gene049739:intron 15.0%
!! TATAATTTATAGTTTGACAA+TGG + chr4.2:47054865-47054884 MS.gene049739:intron 15.0%
!! TTCAAAATGCAAAATATATA+GGG + chr4.2:47052073-47052092 MS.gene049739:intron 15.0%
!!! AATTACTTTTTGAAAGAAAA+AGG + chr4.2:47054725-47054744 MS.gene049739:intron 15.0%
!!! ATTGTTTTGTTTTTTTTAAG+CGG - chr4.2:47055697-47055716 None:intergenic 15.0%
!!! GAAACTTTTAATTAAGTTAA+AGG + chr4.2:47054655-47054674 MS.gene049739:intron 15.0%
!!! GAACATTTTGAATTAATAAT+TGG + chr4.2:47055224-47055243 MS.gene049739:intron 15.0%
!! AAAATTTGAAAAGAATGCAT+TGG + chr4.2:47055427-47055446 MS.gene049739:intron 20.0%
!! AAACAATGAAGTTGTTAAAA+AGG - chr4.2:47051820-47051839 None:intergenic 20.0%
!! AAACAGAAAATAGTATGTTT+AGG - chr4.2:47054969-47054988 None:intergenic 20.0%
!! AACAGAAAATAGTATGTTTA+GGG - chr4.2:47054968-47054987 None:intergenic 20.0%
!! AATAACCAACCAAAAATTTA+AGG - chr4.2:47054392-47054411 None:intergenic 20.0%
!! AATAAGCAAAACAATTGTAA+AGG - chr4.2:47052990-47053009 None:intergenic 20.0%
!! ATAGTCACTATATTTGATAA+GGG - chr4.2:47053463-47053482 None:intergenic 20.0%
!! ATTATCCAAAACAGTAAAAT+TGG + chr4.2:47053696-47053715 MS.gene049739:CDS 20.0%
!! ATTGTAATAACCTTGAAAAT+AGG + chr4.2:47052291-47052310 MS.gene049739:intron 20.0%
!! GTTCAAAATGCAAAATATAT+AGG + chr4.2:47052072-47052091 MS.gene049739:intron 20.0%
!! TAAATTAAAGAGATAGATAC+AGG + chr4.2:47055372-47055391 MS.gene049739:intron 20.0%
!! TCGTAATTTCATAATTACTA+CGG - chr4.2:47051927-47051946 None:intergenic 20.0%
!! TTATCCAAAACAGTAAAATT+GGG + chr4.2:47053697-47053716 MS.gene049739:CDS 20.0%
!!! AAATATAAGAGTCTGTATTT+TGG + chr4.2:47052805-47052824 MS.gene049739:intron 20.0%
!!! ACACCTTTTTTAATGATTTT+GGG + chr4.2:47054598-47054617 MS.gene049739:intron 20.0%
!!! ATCCTTTGTATTATTTTACT+AGG - chr4.2:47054916-47054935 None:intergenic 20.0%
!!! ATGATATCTATTTGTTTTAC+AGG + chr4.2:47055472-47055491 MS.gene049739:intron 20.0%
!!! GGTGTAAAAAGATTTTTTTA+GGG + chr4.2:47052049-47052068 MS.gene049739:intron 20.0%
!!! GTGTAAAAAGATTTTTTTAG+GGG + chr4.2:47052050-47052069 MS.gene049739:intron 20.0%
!!! TACACCTTTTTTAATGATTT+TGG + chr4.2:47054597-47054616 MS.gene049739:intron 20.0%
!!! TATTTTATGTAAATCTTGAG+AGG - chr4.2:47055308-47055327 None:intergenic 20.0%
!!! TGGTGTAAAAAGATTTTTTT+AGG + chr4.2:47052048-47052067 MS.gene049739:intron 20.0%
!!! TTTTTTTTTTTGTTTTCCGT+AGG - chr4.2:47052257-47052276 None:intergenic 20.0%
! AAAAAATATGCAACTGCATA+TGG - chr4.2:47052386-47052405 None:intergenic 25.0%
! AAAACATATCTCTTTAACCA+TGG - chr4.2:47053502-47053521 None:intergenic 25.0%
! AAAAGGTAAATGCTATACTT+TGG + chr4.2:47054742-47054761 MS.gene049739:intron 25.0%
! AAATATATGCAAAACTGTAC+CGG - chr4.2:47054684-47054703 None:intergenic 25.0%
! AAATCCAAAAATATCAGGTA+AGG - chr4.2:47053195-47053214 None:intergenic 25.0%
! AACATAATTTGGCTAAAACA+TGG + chr4.2:47055088-47055107 MS.gene049739:intron 25.0%
! AATAATTATATGCCAAGAGA+AGG + chr4.2:47054766-47054785 MS.gene049739:intron 25.0%
! AATCCAAAAATATCAGGTAA+GGG - chr4.2:47053194-47053213 None:intergenic 25.0%
! ACAGAAAATAGTATGTTTAG+GGG - chr4.2:47054967-47054986 None:intergenic 25.0%
! ATAATACAAAGGATTTGTCT+AGG + chr4.2:47054922-47054941 MS.gene049739:intron 25.0%
! ATATTCAAACAAGGCAATAT+AGG + chr4.2:47054075-47054094 MS.gene049739:CDS 25.0%
! ATGTCTATTGAAAAAATCTC+GGG - chr4.2:47055815-47055834 None:intergenic 25.0%
! ATTCTCAAACAAATTGAAGA+GGG + chr4.2:47053324-47053343 MS.gene049739:CDS 25.0%
! ATTGACGTTCTTCAAATAAA+AGG - chr4.2:47052894-47052913 None:intergenic 25.0%
! CAATCAAAATTCAAAACCAA+TGG + chr4.2:47052910-47052929 MS.gene049739:intron 25.0%
! CATGTCTATTGAAAAAATCT+CGG - chr4.2:47055816-47055835 None:intergenic 25.0%
! CTTGAAAATAGGAAGTAAAA+TGG + chr4.2:47052302-47052321 MS.gene049739:intron 25.0%
! GACAAGCATGATAATATTAT+TGG - chr4.2:47055002-47055021 None:intergenic 25.0%
! GATAATGTCATTATTAGACA+CGG - chr4.2:47053682-47053701 None:intergenic 25.0%
! GATAGTCACTATATTTGATA+AGG - chr4.2:47053464-47053483 None:intergenic 25.0%
! GTAGAAATAGTAATCAATGT+GGG + chr4.2:47051960-47051979 MS.gene049739:intron 25.0%
! GTGAGGAATATATCTATTAA+TGG + chr4.2:47056138-47056157 MS.gene049739:CDS 25.0%
! TAAAGATATTCCACAAGAAT+GGG - chr4.2:47055407-47055426 None:intergenic 25.0%
! TAAATCCAAAGTGAAGATAA+AGG + chr4.2:47054624-47054643 MS.gene049739:intron 25.0%
! TCACAAATGATATTCAAACA+AGG + chr4.2:47054066-47054085 MS.gene049739:CDS 25.0%
! TGATACTAATGTGATATCAA+GGG - chr4.2:47052669-47052688 None:intergenic 25.0%
! TGTAGAAATAGTAATCAATG+TGG + chr4.2:47051959-47051978 MS.gene049739:intron 25.0%
! TTAAAGATATTCCACAAGAA+TGG - chr4.2:47055408-47055427 None:intergenic 25.0%
! TTAATTAAGTTAAAGGTTCC+CGG + chr4.2:47054662-47054681 MS.gene049739:intron 25.0%
! TTCAGAAATCCAAAAATATC+AGG - chr4.2:47053200-47053219 None:intergenic 25.0%
! TTGACGTTCTTCAAATAAAA+GGG - chr4.2:47052893-47052912 None:intergenic 25.0%
! TTGATACTAATGTGATATCA+AGG - chr4.2:47052670-47052689 None:intergenic 25.0%
!! ATATGTTTTCATGTTCTAGT+GGG + chr4.2:47053513-47053532 MS.gene049739:CDS 25.0%
!! ATCTAACATGGGATTATTTT+CGG + chr4.2:47052222-47052241 MS.gene049739:intron 25.0%
!! ATGATTGTAAAAGCATGAAA+AGG - chr4.2:47054433-47054452 None:intergenic 25.0%
!! ATTGACTGATGTTTGATTTA+AGG + chr4.2:47053030-47053049 MS.gene049739:intron 25.0%
!! CATTTTACTTCCTATTTTCA+AGG - chr4.2:47052304-47052323 None:intergenic 25.0%
!! CTCTTTTGTCCTTAAATTTT+TGG + chr4.2:47054380-47054399 MS.gene049739:intron 25.0%
!! GGTAATGTGTTCTATATTTT+TGG - chr4.2:47052356-47052375 None:intergenic 25.0%
!! GTGCTATTATTATTTGATGT+TGG + chr4.2:47054281-47054300 MS.gene049739:intron 25.0%
!! TTGACTGATGTTTGATTTAA+GGG + chr4.2:47053031-47053050 MS.gene049739:intron 25.0%
!!! AATTGCTATTTTGAAATTCG+AGG + chr4.2:47053058-47053077 MS.gene049739:intron 25.0%
!!! ATGCAGTTGCATATTTTTTT+TGG + chr4.2:47052387-47052406 MS.gene049739:intron 25.0%
!!! ATTGCTATTTTGAAATTCGA+GGG + chr4.2:47053059-47053078 MS.gene049739:intron 25.0%
!!! GTTCAAACTTTTGAGTTATA+GGG + chr4.2:47052021-47052040 MS.gene049739:intron 25.0%
!!! TCCATCAGAATCTTTTTTTT+CGG - chr4.2:47055874-47055893 None:intergenic 25.0%
!!! TTTGTCCTTAAATTTTTGGT+TGG + chr4.2:47054384-47054403 MS.gene049739:intron 25.0%
AAATAGTAATCAATGTGGGT+TGG + chr4.2:47051964-47051983 MS.gene049739:intron 30.0%
AATAGTAATCAATGTGGGTT+GGG + chr4.2:47051965-47051984 MS.gene049739:intron 30.0%
AATATATGCAAAACTGTACC+GGG - chr4.2:47054683-47054702 None:intergenic 30.0%
ACAATGGGAGATACTATTAT+GGG + chr4.2:47054881-47054900 MS.gene049739:intron 30.0%
AGCATTCATTTGAAAAGAGA+AGG + chr4.2:47056073-47056092 MS.gene049739:CDS 30.0%
ATCAAATATAGTGACTATCG+TGG + chr4.2:47053465-47053484 MS.gene049739:CDS 30.0%
CAAAACAGTAAAATTGGGAA+TGG + chr4.2:47053702-47053721 MS.gene049739:CDS 30.0%
CAAATTCTTGTTGAAACAAC+AGG - chr4.2:47055114-47055133 None:intergenic 30.0%
CAGAAAATAGTATGTTTAGG+GGG - chr4.2:47054966-47054985 None:intergenic 30.0%
GATTCTCAAACAAATTGAAG+AGG + chr4.2:47053323-47053342 MS.gene049739:CDS 30.0%
GGCCTAGTAAAATAATACAA+AGG + chr4.2:47054911-47054930 MS.gene049739:intron 30.0%
TAGTTTCTTAGTACGATACA+GGG - chr4.2:47054244-47054263 None:intergenic 30.0%
TATGTTGAGTCAAAACTTCT+AGG - chr4.2:47055354-47055373 None:intergenic 30.0%
TATGTTGTTCAATCTAAGCT+TGG + chr4.2:47051735-47051754 MS.gene049739:CDS 30.0%
TCTAGTCCTTCAAATTGTAA+GGG - chr4.2:47053099-47053118 None:intergenic 30.0%
TCTGAACTCTGTTAATGATT+TGG + chr4.2:47053214-47053233 MS.gene049739:intron 30.0%
TGGAACTGGAAAACATAATT+TGG + chr4.2:47055077-47055096 MS.gene049739:intron 30.0%
TTCATTTGAAAAGAGAAGGA+AGG + chr4.2:47056077-47056096 MS.gene049739:CDS 30.0%
TTCTAGTCCTTCAAATTGTA+AGG - chr4.2:47053100-47053119 None:intergenic 30.0%
TTTGGACAGAAAATCGTTAA+AGG - chr4.2:47054462-47054481 None:intergenic 30.0%
! AAAATGTGTTGTGAAGCTTT+TGG + chr4.2:47053362-47053381 MS.gene049739:CDS 30.0%
! CATTCCCAATTTTACTGTTT+TGG - chr4.2:47053704-47053723 None:intergenic 30.0%
! CTCAACTTTTACAAATTTCC+AGG - chr4.2:47052832-47052851 None:intergenic 30.0%
! CTGCATTTCATTCTGAAAAT+TGG + chr4.2:47055730-47055749 MS.gene049739:intron 30.0%
! GATATGTTTTCATGTTCTAG+TGG + chr4.2:47053512-47053531 MS.gene049739:CDS 30.0%
! TGTATGGTTTTTGAATTCCT+TGG + chr4.2:47053423-47053442 MS.gene049739:CDS 30.0%
! TTACCCTTACCTGATATTTT+TGG + chr4.2:47053188-47053207 MS.gene049739:intron 30.0%
!! ATTAGACACGGACTTATTTT+TGG - chr4.2:47053670-47053689 None:intergenic 30.0%
!! CAAAATCAAGTATTGGAAGA+AGG - chr4.2:47055942-47055961 None:intergenic 30.0%
!! GGCTTGTTGGTTAATAATAT+TGG + chr4.2:47052765-47052784 MS.gene049739:intron 30.0%
!! TTGCTGTTTCATATGTTTGA+GGG - chr4.2:47052864-47052883 None:intergenic 30.0%
!! TTTGCTGTTTCATATGTTTG+AGG - chr4.2:47052865-47052884 None:intergenic 30.0%
!! TTTTTGTTTGTAGCGTTATG+TGG + chr4.2:47053242-47053261 MS.gene049739:intron 30.0%
!!! ACAACACATTTTTTGTCATC+AGG - chr4.2:47053354-47053373 None:intergenic 30.0%
!!! ACTTATTTTTGGTGTTTGGA+AGG - chr4.2:47053659-47053678 None:intergenic 30.0%
!!! ATCGCTTTTTAAAGTTTAGG+GGG + chr4.2:47052106-47052125 MS.gene049739:intron 30.0%
!!! ATTTGTTTTACAGGATCATC+TGG + chr4.2:47055481-47055500 MS.gene049739:intron 30.0%
!!! CAACACATTTTTTGTCATCA+GGG - chr4.2:47053353-47053372 None:intergenic 30.0%
!!! CATCGCTTTTTAAAGTTTAG+GGG + chr4.2:47052105-47052124 MS.gene049739:intron 30.0%
!!! CCTTTTTTAATGATTTTGGG+CGG + chr4.2:47054601-47054620 MS.gene049739:intron 30.0%
!!! CGAGATTTTTTCAATAGACA+TGG + chr4.2:47055814-47055833 MS.gene049739:CDS 30.0%
!!! GCATCGCTTTTTAAAGTTTA+GGG + chr4.2:47052104-47052123 MS.gene049739:intron 30.0%
!!! GGTTCAAACTTTTGAGTTAT+AGG + chr4.2:47052020-47052039 MS.gene049739:intron 30.0%
!!! TGCATCGCTTTTTAAAGTTT+AGG + chr4.2:47052103-47052122 MS.gene049739:intron 30.0%
!!! TTGATTTTGGTAATGCTTGT+TGG + chr4.2:47054030-47054049 MS.gene049739:CDS 30.0%
AACCAGGAGAAGAAAATGAA+GGG + chr4.2:47053738-47053757 MS.gene049739:CDS 35.0%
AACTTTACTCGAAGAGCTAT+TGG - chr4.2:47053895-47053914 None:intergenic 35.0%
AAGTTTGAACCTCTAGATCA+AGG - chr4.2:47052011-47052030 None:intergenic 35.0%
ACCCACATTTGTATCTAACA+TGG + chr4.2:47052210-47052229 MS.gene049739:intron 35.0%
ACTTTACTCGAAGAGCTATT+GGG - chr4.2:47053894-47053913 None:intergenic 35.0%
AGTTTCTTAGTACGATACAG+GGG - chr4.2:47054243-47054262 None:intergenic 35.0%
ATCAAAAAGAACATCACCAG+TGG - chr4.2:47054180-47054199 None:intergenic 35.0%
ATGTGTTCATCGTTGATATC+GGG + chr4.2:47051886-47051905 MS.gene049739:intron 35.0%
CAATGGGAGATACTATTATG+GGG + chr4.2:47054882-47054901 MS.gene049739:intron 35.0%
CAGATCCTTTATCTTCACTT+TGG - chr4.2:47054632-47054651 None:intergenic 35.0%
CCCACATTTGTATCTAACAT+GGG + chr4.2:47052211-47052230 MS.gene049739:intron 35.0%
CCCATGTTAGATACAAATGT+GGG - chr4.2:47052214-47052233 None:intergenic 35.0%
CCGCCCAAAATCATTAAAAA+AGG - chr4.2:47054604-47054623 None:intergenic 35.0%
GAATGAAGTAACACATTCTC+AGG - chr4.2:47053588-47053607 None:intergenic 35.0%
GACAATGGGAGATACTATTA+TGG + chr4.2:47054880-47054899 MS.gene049739:intron 35.0%
GAGAAGAAAATGAAGGGAAA+GGG + chr4.2:47053744-47053763 MS.gene049739:CDS 35.0%
GATACTATTATGGGGTTCTA+AGG + chr4.2:47054890-47054909 MS.gene049739:intron 35.0%
GATGTGTTCATCGTTGATAT+CGG + chr4.2:47051885-47051904 MS.gene049739:intron 35.0%
GATTACAGTTCAGAAGATGA+AGG + chr4.2:47051645-47051664 MS.gene049739:CDS 35.0%
GCCGAAAAAAAAGATTCTGA+TGG + chr4.2:47055870-47055889 MS.gene049739:CDS 35.0%
GTAGTTTCTTAGTACGATAC+AGG - chr4.2:47054245-47054264 None:intergenic 35.0%
TAGTGAAATCATTTCCCCTT+CGG + chr4.2:47052700-47052719 MS.gene049739:intron 35.0%
TCAGGGTCAAAATCAAGTAT+TGG - chr4.2:47055949-47055968 None:intergenic 35.0%
TCATTTATCAATCCAGTGAG+AGG - chr4.2:47055456-47055475 None:intergenic 35.0%
TCCCATGTTAGATACAAATG+TGG - chr4.2:47052215-47052234 None:intergenic 35.0%
TGAAAAAATCTCGGGAATAG+CGG - chr4.2:47055807-47055826 None:intergenic 35.0%
TGAACAAGATGCAAATGACA+TGG + chr4.2:47055909-47055928 MS.gene049739:CDS 35.0%
TGGGAAAAAAATACACCGAA+GGG - chr4.2:47052718-47052737 None:intergenic 35.0%
TGTTCAATCTAAGCTTGGTT+GGG + chr4.2:47051740-47051759 MS.gene049739:CDS 35.0%
TTGTTACAATTATCCTGCTC+AGG - chr4.2:47053837-47053856 None:intergenic 35.0%
TTGTTCAATCTAAGCTTGGT+TGG + chr4.2:47051739-47051758 MS.gene049739:CDS 35.0%
! CGCGCTCTTTTGAATTTTAA+GGG - chr4.2:47053268-47053287 None:intergenic 35.0%
! GTTTTCAACAGATTCTACAC+TGG - chr4.2:47053868-47053887 None:intergenic 35.0%
! TTAAAAAAGGTGTATGCTGC+TGG - chr4.2:47054591-47054610 None:intergenic 35.0%
! TTTTCGGTTGAAGAAACCTA+CGG + chr4.2:47052238-47052257 MS.gene049739:intron 35.0%
!! ATGAAGGTACTGAACACTAT+AGG + chr4.2:47051661-47051680 MS.gene049739:CDS 35.0%
!! CGATTCTAAGATCATCAACA+GGG - chr4.2:47055171-47055190 None:intergenic 35.0%
!! TCGATTCTAAGATCATCAAC+AGG - chr4.2:47055172-47055191 None:intergenic 35.0%
!! TGTTGATGATCTTAGAATCG+AGG + chr4.2:47055171-47055190 MS.gene049739:intron 35.0%
!! TTGATTTTGACCCTGAAAAG+AGG + chr4.2:47055953-47055972 MS.gene049739:CDS 35.0%
!! TTTGGTAATGATGCACACTT+GGG + chr4.2:47052405-47052424 MS.gene049739:intron 35.0%
!!! ACGGACTTATTTTTGGTGTT+TGG - chr4.2:47053663-47053682 None:intergenic 35.0%
!!! CATGCACTTTTTTCACAGTT+TGG - chr4.2:47054480-47054499 None:intergenic 35.0%
!!! CTATTTTGAAATTCGAGGGA+CGG + chr4.2:47053063-47053082 MS.gene049739:intron 35.0%
!!! TTTTGGTAATGATGCACACT+TGG + chr4.2:47052404-47052423 MS.gene049739:intron 35.0%
AAATGAAGGGAAAGGGTAAG+AGG + chr4.2:47053751-47053770 MS.gene049739:CDS 40.0%
AATGAAGGGAAAGGGTAAGA+GGG + chr4.2:47053752-47053771 MS.gene049739:CDS 40.0%
ACAGTGGTGACAACTATGAT+AGG + chr4.2:47054204-47054223 MS.gene049739:CDS 40.0%
ATCAACACAGACCACTGAAA+AGG + chr4.2:47053917-47053936 MS.gene049739:CDS 40.0%
ATCTCTTTAACCATGGAGAG+AGG - chr4.2:47053495-47053514 None:intergenic 40.0%
ATCTGCATCAAACACGAGTT+AGG - chr4.2:47053152-47053171 None:intergenic 40.0%
ATGATATGGGCTTCAAGTCT+CGG - chr4.2:47055267-47055286 None:intergenic 40.0%
ATTATATGCCAAGAGAAGGC+TGG + chr4.2:47054770-47054789 MS.gene049739:intron 40.0%
CAGTGGTGACAACTATGATA+GGG + chr4.2:47054205-47054224 MS.gene049739:CDS 40.0%
GAACCAGGAGAAGAAAATGA+AGG + chr4.2:47053737-47053756 MS.gene049739:CDS 40.0%
GATAACTTTCCTACCTTGCT+AGG - chr4.2:47055536-47055555 None:intergenic 40.0%
GATTTCCTTGGATCCTTTGA+CGG - chr4.2:47053621-47053640 None:intergenic 40.0%
GCAACTGCATATGGATATGT+AGG - chr4.2:47052377-47052396 None:intergenic 40.0%
GCGAAACAAGGTTTGAATCT+CGG + chr4.2:47052176-47052195 MS.gene049739:intron 40.0%
GGAGAAGAAAATGAAGGGAA+AGG + chr4.2:47053743-47053762 MS.gene049739:CDS 40.0%
GGGAAAAAAATACACCGAAG+GGG - chr4.2:47052717-47052736 None:intergenic 40.0%
GTCCTTCAAATTGTAAGGGT+CGG - chr4.2:47053095-47053114 None:intergenic 40.0%
GTGGGAAAAAAATACACCGA+AGG - chr4.2:47052719-47052738 None:intergenic 40.0%
GTTCAATCTAAGCTTGGTTG+GGG + chr4.2:47051741-47051760 MS.gene049739:CDS 40.0%
GTTCCAAATGCTAAGCACAA+AGG - chr4.2:47055063-47055082 None:intergenic 40.0%
TATTCAGGACCTTGATCTAG+AGG + chr4.2:47051999-47052018 MS.gene049739:intron 40.0%
TATTTCCTGCAGATTGCACT+TGG + chr4.2:47055778-47055797 MS.gene049739:intron 40.0%
TCAAAGGATCCAAGGAAATC+AGG + chr4.2:47053621-47053640 MS.gene049739:CDS 40.0%
TCAACTTGTCAGTCTTCCAT+TGG - chr4.2:47052929-47052948 None:intergenic 40.0%
TCAATAGACATGGTGACTTG+AGG + chr4.2:47055824-47055843 MS.gene049739:CDS 40.0%
TCTCCTTTGTGCTTAGCATT+TGG + chr4.2:47055057-47055076 MS.gene049739:intron 40.0%
TGAAAAGAGAAGGAAGGACA+AGG + chr4.2:47056083-47056102 MS.gene049739:CDS 40.0%
TGACAACTATGATAGGGATG+AGG + chr4.2:47054211-47054230 MS.gene049739:CDS 40.0%
TGATTGTAAAGAACCTGAGC+AGG + chr4.2:47053821-47053840 MS.gene049739:CDS 40.0%
TGCTTGGGATACTCTCAAAT+CGG + chr4.2:47051785-47051804 MS.gene049739:CDS 40.0%
TGGATCACTTCAAGCATTCA+GGG + chr4.2:47053382-47053401 MS.gene049739:CDS 40.0%
TGTTGATCTTAAGTGCAAGC+TGG + chr4.2:47054007-47054026 MS.gene049739:CDS 40.0%
TTAGAACCAAGAAGAACCTC+AGG - chr4.2:47054104-47054123 None:intergenic 40.0%
TTATATGCCAAGAGAAGGCT+GGG + chr4.2:47054771-47054790 MS.gene049739:intron 40.0%
TTCTTATGACCATCGTTTCC+TGG - chr4.2:47053951-47053970 None:intergenic 40.0%
TTGGATCACTTCAAGCATTC+AGG + chr4.2:47053381-47053400 MS.gene049739:CDS 40.0%
! AGAATCTAGCTCATTTGAGG+TGG - chr4.2:47052142-47052161 None:intergenic 40.0%
! GAATGCTCATTGATTGCATC+AGG - chr4.2:47056060-47056079 None:intergenic 40.0%
! GCGCGCTCTTTTGAATTTTA+AGG - chr4.2:47053269-47053288 None:intergenic 40.0%
! GGAAGAATCTAGCTCATTTG+AGG - chr4.2:47052145-47052164 None:intergenic 40.0%
! GTGATATCAAGGGTGTGTTT+GGG - chr4.2:47052659-47052678 None:intergenic 40.0%
! GTTCTTTTTGATCCTCACAG+TGG + chr4.2:47054188-47054207 MS.gene049739:CDS 40.0%
! TGAGTGTTTTCTGAACAGAG+TGG + chr4.2:47054354-47054373 MS.gene049739:intron 40.0%
! TGTGATATCAAGGGTGTGTT+TGG - chr4.2:47052660-47052679 None:intergenic 40.0%
! TTCACTGATTGATCCGTCAA+AGG + chr4.2:47053605-47053624 MS.gene049739:CDS 40.0%
! TTCCCTTCATTTTCTTCTCC+TGG - chr4.2:47053743-47053762 None:intergenic 40.0%
! TTGGTGTTTGGAAGGATAAG+TGG - chr4.2:47053651-47053670 None:intergenic 40.0%
! TTGTGCTTAGCATTTGGAAC+TGG + chr4.2:47055063-47055082 MS.gene049739:intron 40.0%
!! AAGTGCAAGCTGGTTGATTT+TGG + chr4.2:47054017-47054036 MS.gene049739:CDS 40.0%
!! ATGTTGATGACTTTACGGGT+CGG - chr4.2:47056188-47056207 None:intergenic 40.0%
!! CTTGGTGATGCTTTCAACAA+TGG + chr4.2:47051708-47051727 MS.gene049739:CDS 40.0%
!! GCATTGATGATGGAACTTCT+TGG + chr4.2:47055503-47055522 MS.gene049739:CDS 40.0%
!! TTCTACTGTTTGGCTTGCTT+GGG + chr4.2:47051770-47051789 MS.gene049739:CDS 40.0%
!! TTGGTAATGATGCACACTTG+GGG + chr4.2:47052406-47052425 MS.gene049739:intron 40.0%
!! TTTCTACTGTTTGGCTTGCT+TGG + chr4.2:47051769-47051788 MS.gene049739:CDS 40.0%
!!! AAGAGTCTGTATTTTGGTCC+TGG + chr4.2:47052811-47052830 MS.gene049739:intron 40.0%
!!! CTTTTGAGTTATAGGGCTAG+TGG + chr4.2:47052028-47052047 MS.gene049739:intron 40.0%
!!! GGGGTCATTTTTCTACTGTT+TGG + chr4.2:47051760-47051779 MS.gene049739:CDS 40.0%
!!! TTTTCATGTTCTAGTGGGCT+TGG + chr4.2:47053518-47053537 MS.gene049739:CDS 40.0%
AACAAGGTTTGAATCTCGGC+TGG + chr4.2:47052180-47052199 MS.gene049739:intron 45.0%
AAGGAAAGTCCAGAGGAATC+TGG + chr4.2:47053795-47053814 MS.gene049739:CDS 45.0%
AAGGCAATATAGGTGTCCTG+AGG + chr4.2:47054085-47054104 MS.gene049739:CDS 45.0%
ACAAGGTTTGAATCTCGGCT+GGG + chr4.2:47052181-47052200 MS.gene049739:intron 45.0%
ACACTACACTGAAGCTGCAA+TGG + chr4.2:47053290-47053309 MS.gene049739:CDS 45.0%
ACATCCATGAGTTGCGATTC+TGG + chr4.2:47055848-47055867 MS.gene049739:CDS 45.0%
ACCTGCACTTATCCATGGAT+GGG - chr4.2:47056001-47056020 None:intergenic 45.0%
ACTCAACTCCAGCAGATATG+TGG + chr4.2:47054126-47054145 MS.gene049739:CDS 45.0%
AGGAAAGTCCAGAGGAATCT+GGG + chr4.2:47053796-47053815 MS.gene049739:CDS 45.0%
AGGAAAGTTATCTGCTCTGG+TGG + chr4.2:47055544-47055563 MS.gene049739:intron 45.0%
AGGTTGTGTACTAGTCAGTG+AGG - chr4.2:47056040-47056059 None:intergenic 45.0%
ATACACACATGCACGCCATT+AGG - chr4.2:47053408-47053427 None:intergenic 45.0%
CAAGGCGCACTAATAAGATC+GGG - chr4.2:47052741-47052760 None:intergenic 45.0%
CACTTATCCATGGATGGGTA+AGG - chr4.2:47055996-47056015 None:intergenic 45.0%
CATCACCAAGTTTCACAGCA+TGG - chr4.2:47051698-47051717 None:intergenic 45.0%
CTCAAAGCAGATGCAAGCAA+AGG - chr4.2:47054153-47054172 None:intergenic 45.0%
GACCGACCCTTACAATTTGA+AGG + chr4.2:47053090-47053109 MS.gene049739:intron 45.0%
GAGAAGGAAGGACAAGGAAA+AGG + chr4.2:47056089-47056108 MS.gene049739:CDS 45.0%
GCAAGGCGCACTAATAAGAT+CGG - chr4.2:47052742-47052761 None:intergenic 45.0%
GCAGCTTCTTTCTCATGGAA+CGG - chr4.2:47053980-47053999 None:intergenic 45.0%
GGGTGAGAAGATTATCACCA+AGG - chr4.2:47053443-47053462 None:intergenic 45.0%
GGTAGGAAAGTTATCTGCTC+TGG + chr4.2:47055541-47055560 MS.gene049739:intron 45.0%
GGTTGTGTACTAGTCAGTGA+GGG - chr4.2:47056039-47056058 None:intergenic 45.0%
GTCAAAGCTTCCCATTCTTG+TGG + chr4.2:47055394-47055413 MS.gene049739:intron 45.0%
TAATGGCGTGCATGTGTGTA+TGG + chr4.2:47053407-47053426 MS.gene049739:CDS 45.0%
TAGATTCTTCCATGCTCACG+AGG + chr4.2:47052154-47052173 MS.gene049739:intron 45.0%
TCATAGTTGTCACCACTGTG+AGG - chr4.2:47054203-47054222 None:intergenic 45.0%
TCTTATTAGTGCGCCTTGCA+CGG + chr4.2:47052743-47052762 MS.gene049739:intron 45.0%
TCTTGGAAAGATGCCTAGCA+AGG + chr4.2:47055520-47055539 MS.gene049739:CDS 45.0%
TGCTGGTACTCGATCAAAGT+TGG + chr4.2:47054501-47054520 MS.gene049739:intron 45.0%
TGGGATACTCTCAAATCGGT+GGG + chr4.2:47051789-47051808 MS.gene049739:intron 45.0%
TGGGTACTAGTGGTGTATTC+AGG + chr4.2:47051984-47052003 MS.gene049739:intron 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG - chr4.2:47052646-47052665 None:intergenic 45.0%
TGTTCGACTCAATTGAGCAG+CGG - chr4.2:47054563-47054582 None:intergenic 45.0%
TGTTGAGAAGGAAAGTCCAG+AGG + chr4.2:47053788-47053807 MS.gene049739:CDS 45.0%
TTCAAGCATTCAGGGCCTAA+TGG + chr4.2:47053390-47053409 MS.gene049739:CDS 45.0%
TTCCATGAGAAAGAAGCTGC+TGG + chr4.2:47053980-47053999 MS.gene049739:CDS 45.0%
TTGATCCGTCAAAGGATCCA+AGG + chr4.2:47053613-47053632 MS.gene049739:CDS 45.0%
TTGGGATACTCTCAAATCGG+TGG + chr4.2:47051788-47051807 MS.gene049739:intron 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG - chr4.2:47052642-47052661 None:intergenic 45.0%
! AAAAGGTGTATGCTGCTGGT+TGG - chr4.2:47054587-47054606 None:intergenic 45.0%
! GTGAAAAAAGTGCATGCTGC+TGG + chr4.2:47054484-47054503 MS.gene049739:intron 45.0%
! TTCTTCTCCTGGTTCTTCGT+CGG - chr4.2:47053732-47053751 None:intergenic 45.0%
!! GGATCATCTGGCATTGATGA+TGG + chr4.2:47055493-47055512 MS.gene049739:intron 45.0%
!! TGTTGATGACTTTACGGGTC+GGG - chr4.2:47056187-47056206 None:intergenic 45.0%
!!! CGGGAGTTTTTGAGTGACAT+AGG - chr4.2:47056168-47056187 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAACT+AGG + chr4.2:47052266-47052285 MS.gene049739:intron 5.0%
AACTTCCACCAACTCCTGCT+CGG - chr4.2:47056115-47056134 None:intergenic 50.0%
AAGAGGGTTTAGGAGGGGAA+GGG - chr4.2:47052636-47052655 None:intergenic 50.0%
ACCCATCCATGGATAAGTGC+AGG + chr4.2:47055997-47056016 MS.gene049739:CDS 50.0%
ACTGAAAAGGACCTTGCACC+AGG + chr4.2:47053930-47053949 MS.gene049739:CDS 50.0%
ACTGAACACTATAGGCGTGG+TGG + chr4.2:47051669-47051688 MS.gene049739:CDS 50.0%
AGGTGTCCTGAGGTTCTTCT+TGG + chr4.2:47054095-47054114 MS.gene049739:CDS 50.0%
ATGCACACTTGGGGTGTGTT+TGG + chr4.2:47052415-47052434 MS.gene049739:intron 50.0%
CAATCATCCCCAGATTCCTC+TGG - chr4.2:47053807-47053826 None:intergenic 50.0%
CTGAACACTATAGGCGTGGT+GGG + chr4.2:47051670-47051689 MS.gene049739:CDS 50.0%
CTTATTAGTGCGCCTTGCAC+GGG + chr4.2:47052744-47052763 MS.gene049739:intron 50.0%
GACCTGCACTTATCCATGGA+TGG - chr4.2:47056002-47056021 None:intergenic 50.0%
GCAAAGGACCACATATCTGC+TGG - chr4.2:47054137-47054156 None:intergenic 50.0%
GCGCACTAATAAGATCGGGT+GGG - chr4.2:47052737-47052756 None:intergenic 50.0%
GGAAAGATGCCTAGCAAGGT+AGG + chr4.2:47055524-47055543 MS.gene049739:intron 50.0%
GGAAAGTCCAGAGGAATCTG+GGG + chr4.2:47053797-47053816 MS.gene049739:CDS 50.0%
GGGTACCATGCTGTGAAACT+TGG + chr4.2:47051690-47051709 MS.gene049739:CDS 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG - chr4.2:47052643-47052662 None:intergenic 50.0%
TATCTCACCCAGCCTTCTCT+TGG - chr4.2:47054781-47054800 None:intergenic 50.0%
TGCACACTTGGGGTGTGTTT+GGG + chr4.2:47052416-47052435 MS.gene049739:intron 50.0%
TGCCAGCAGCTTCTTTCTCA+TGG - chr4.2:47053985-47054004 None:intergenic 50.0%
TGTGTTTGGGAGGAGGGTTT+AGG + chr4.2:47052429-47052448 MS.gene049739:intron 50.0%
TTAACCAACAAGCCCGTGCA+AGG - chr4.2:47052759-47052778 None:intergenic 50.0%
TTCCTGCAGATTGCACTTGG+TGG + chr4.2:47055781-47055800 MS.gene049739:intron 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG - chr4.2:47052641-47052660 None:intergenic 50.0%
TTTGGGAGGAGGGTTTAGGA+GGG + chr4.2:47052433-47052452 MS.gene049739:intron 50.0%
! AGTGGAGCACCTGATTTCCT+TGG - chr4.2:47053633-47053652 None:intergenic 50.0%
! ATCTGCTTTGAGCTTGCCAC+TGG + chr4.2:47054161-47054180 MS.gene049739:CDS 50.0%
! CAAGGGTGTGTTTGGGAAGA+GGG - chr4.2:47052652-47052671 None:intergenic 50.0%
! GGTACTGAACACTATAGGCG+TGG + chr4.2:47051666-47051685 MS.gene049739:CDS 50.0%
! TCAAGGGTGTGTTTGGGAAG+AGG - chr4.2:47052653-47052672 None:intergenic 50.0%
! TGGTGCAAGGTCCTTTTCAG+TGG - chr4.2:47053931-47053950 None:intergenic 50.0%
!! AGTTGGTGGAAGTTGGTGTG+AGG + chr4.2:47056121-47056140 MS.gene049739:CDS 50.0%
!! ATGCATTGGCTTCCTCTCAC+TGG + chr4.2:47055441-47055460 MS.gene049739:intron 50.0%
!! CAATGTGGGTTGGGTACTAG+TGG + chr4.2:47051974-47051993 MS.gene049739:intron 50.0%
!! CAGCTGTTGGCCTCTTTTCA+GGG - chr4.2:47055966-47055985 None:intergenic 50.0%
AAGGGTAAGAGGGTGGCTCA+AGG + chr4.2:47053762-47053781 MS.gene049739:CDS 55.0%
AATTGAGCAGCGGCACTGCT+GGG - chr4.2:47054553-47054572 None:intergenic 55.0%
ACACTTGGGGTGTGTTTGGG+AGG + chr4.2:47052419-47052438 MS.gene049739:intron 55.0%
ACTGCTGGGAGCTGTAGAGA+CGG - chr4.2:47054539-47054558 None:intergenic 55.0%
AGGAGGGTTTAGGAGGGGAA+GGG + chr4.2:47052439-47052458 MS.gene049739:intron 55.0%
AGTGAGGGCTCAAGAGTTCG+AGG - chr4.2:47056024-47056043 None:intergenic 55.0%
CATGCTCACGAGGCGAAACA+AGG + chr4.2:47052164-47052183 MS.gene049739:intron 55.0%
CGAGGACCTGCACTTATCCA+TGG - chr4.2:47056006-47056025 None:intergenic 55.0%
CGATCAAAGTTGGCTGCTGC+TGG + chr4.2:47054511-47054530 MS.gene049739:intron 55.0%
CTCAGTGCCTTACCCATCCA+TGG + chr4.2:47055986-47056005 MS.gene049739:CDS 55.0%
CTTGTTTCGCCTCGTGAGCA+TGG - chr4.2:47052166-47052185 None:intergenic 55.0%
GAAGAGGGTTTAGGAGGGGA+AGG - chr4.2:47052637-47052656 None:intergenic 55.0%
GAAGGGAAAGGGTAAGAGGG+TGG + chr4.2:47053755-47053774 MS.gene049739:CDS 55.0%
GACCATCGTTTCCTGGTGCA+AGG - chr4.2:47053944-47053963 None:intergenic 55.0%
GACCTTGCACCAGGAAACGA+TGG + chr4.2:47053939-47053958 MS.gene049739:CDS 55.0%
GGCGCACTAATAAGATCGGG+TGG - chr4.2:47052738-47052757 None:intergenic 55.0%
GGCTCAAGGCTGTGTTGAGA+AGG + chr4.2:47053776-47053795 MS.gene049739:CDS 55.0%
GTTTGGGAGGAGGGTTTAGG+AGG + chr4.2:47052432-47052451 MS.gene049739:intron 55.0%
TCGGCCAGAATCGCAACTCA+TGG - chr4.2:47055855-47055874 None:intergenic 55.0%
TCGTGGAGTTCCTCTCTCCA+TGG + chr4.2:47053482-47053501 MS.gene049739:CDS 55.0%
TGGAGATCCGACGAAGAACC+AGG + chr4.2:47053722-47053741 MS.gene049739:CDS 55.0%
TTGGGAGGAGGGTTTAGGAG+GGG + chr4.2:47052434-47052453 MS.gene049739:intron 55.0%
TTGGGGTGTGTTTGGGAGGA+GGG + chr4.2:47052423-47052442 MS.gene049739:intron 55.0%
!! GAGCAGGAGTTGGTGGAAGT+TGG + chr4.2:47056114-47056133 MS.gene049739:CDS 55.0%
!! GCAGCTGTTGGCCTCTTTTC+AGG - chr4.2:47055967-47055986 None:intergenic 55.0%
!! GTAAGGCACTGAGCAGCTGT+TGG - chr4.2:47055979-47055998 None:intergenic 55.0%
AAAGGCCGAGCAGGAGTTGG+TGG + chr4.2:47056107-47056126 MS.gene049739:CDS 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr4.2:47052442-47052461 MS.gene049739:intron 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr4.2:47052461-47052442 None:intergenic 60.0%
CAATTGAGCAGCGGCACTGC+TGG - chr4.2:47054554-47054573 None:intergenic 60.0%
CTTGGGGTGTGTTTGGGAGG+AGG + chr4.2:47052422-47052441 MS.gene049739:intron 60.0%
GAGGAGGGTTTAGGAGGGGA+AGG + chr4.2:47052438-47052457 MS.gene049739:intron 60.0%
GGAAAAGGCCGAGCAGGAGT+TGG + chr4.2:47056104-47056123 MS.gene049739:CDS 60.0%
GGACAAGGAAAAGGCCGAGC+AGG + chr4.2:47056098-47056117 MS.gene049739:CDS 60.0%
GGCCACCAAGTGCAATCTGC+AGG - chr4.2:47055786-47055805 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr4.2:47052443-47052462 MS.gene049739:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr4.2:47052462-47052443 None:intergenic 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr4.2:47052444-47052463 MS.gene049739:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr4.2:47052463-47052444 None:intergenic 60.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr4.2:47052448-47052467 MS.gene049739:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr4.2:47052467-47052448 None:intergenic 65.0%
TGCGCCTTGCACGGGCTTGT+TGG + chr4.2:47052752-47052771 MS.gene049739:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr4.2:47052447-47052466 MS.gene049739:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr4.2:47052466-47052447 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 47051621 47056209 47051621 ID=MS.gene049739
chr4.2 mRNA 47051621 47056209 47051621 ID=MS.gene049739.t1;Parent=MS.gene049739
chr4.2 exon 47051621 47051806 47051621 ID=MS.gene049739.t1.exon1;Parent=MS.gene049739.t1
chr4.2 CDS 47051621 47051806 47051621 ID=cds.MS.gene049739.t1;Parent=MS.gene049739.t1
chr4.2 exon 47053255 47054232 47053255 ID=MS.gene049739.t1.exon2;Parent=MS.gene049739.t1
chr4.2 CDS 47053255 47054232 47053255 ID=cds.MS.gene049739.t1;Parent=MS.gene049739.t1
chr4.2 exon 47055494 47055541 47055494 ID=MS.gene049739.t1.exon3;Parent=MS.gene049739.t1
chr4.2 CDS 47055494 47055541 47055494 ID=cds.MS.gene049739.t1;Parent=MS.gene049739.t1
chr4.2 exon 47055790 47056209 47055790 ID=MS.gene049739.t1.exon4;Parent=MS.gene049739.t1
chr4.2 CDS 47055790 47056209 47055790 ID=cds.MS.gene049739.t1;Parent=MS.gene049739.t1
Gene Sequence

>MS.gene049739

ATGGAGAGAAAAGGAATCAACAATGATTACAGTTCAGAAGATGAAGGTACTGAACACTATAGGCGTGGTGGGTACCATGCTGTGAAACTTGGTGATGCTTTCAACAATGGCTGCTATGTTGTTCAATCTAAGCTTGGTTGGGGTCATTTTTCTACTGTTTGGCTTGCTTGGGATACTCTCAAATCGGTGGGTGTTTCCTTTTTAACAACTTCATTGTTTTCTTACCTTTTTTTTTGTTGTTTTTGTTTTTAGAATTTGTTGTTTGATGTGTTCATCGTTGATATCGGGTATCATTAGAGTTTTCCGTAGTAATTATGAAATTACGACTTTGATTTTGATGTAGAAATAGTAATCAATGTGGGTTGGGTACTAGTGGTGTATTCAGGACCTTGATCTAGAGGTTCAAACTTTTGAGTTATAGGGCTAGTGGTGTAAAAAGATTTTTTTAGGGGTTCAAAATGCAAAATATATAGGGTTATATTTGCATCGCTTTTTAAAGTTTAGGGGGTTCAATTGATCCACCTCAAATGAGCTAGATTCTTCCATGCTCACGAGGCGAAACAAGGTTTGAATCTCGGCTGGGAAAGTTACCCACATTTGTATCTAACATGGGATTATTTTCGGTTGAAGAAACCTACGGAAAACAAAAAAAAAAAAAAAAAACTAGGAAATTGTAATAACCTTGAAAATAGGAAGTAAAATGGTGAAAATGTTATGTTTTTGTTAATATTACCAAAAATATAGAACACATTACCTACATATCCATATGCAGTTGCATATTTTTTTTGGTAATGATGCACACTTGGGGTGTGTTTGGGAGGAGGGTTTAGGAGGGGAAGGGAGGGGAGGGCTCACTTTTAATTTTTAAATTACGAACAATGTAAAATGTCTTTTTAAGATAAATTAAGTGTTTTTGAAGTATTATATGATCATTTATCATGTTGTTAATTCAATTTTTTAAAAATCATTTTATAATGTCTTTAAATTAAAAAAGGAATGTAAGCCCTCCCCTCCCTTCCCCTCCTAAACCCTCTTCCCAAACACACCCTTGATATCACATTAGTATCAACATTCGATACTAGTGAAATCATTTCCCCTTCGGTGTATTTTTTTCCCACCCGATCTTATTAGTGCGCCTTGCACGGGCTTGTTGGTTAATAATATTGGCCATTTAAAAAAAAAAAAAATATAAGAGTCTGTATTTTGGTCCTGGAAATTTGTAAAAGTTGAGCAATGTAGTCCCTCAAACATATGAAACAGCAAATTAGTCCCTTTTATTTGAAGAACGTCAATCAAAATTCAAAACCAATGGAAGACTGACAAGTTGACTTGAATAGTCTCTTGCTGAATTAAGACAAGCATACAACCTTTACAATTGTTTTGCTTATTTTAAAAAAAAAAAAGACTAAATTGACTGATGTTTGATTTAAGGGACTAAATTGCTATTTTGAAATTCGAGGGACGGAATTGACCGACCCTTACAATTTGAAGGACTAGAATGTTGATTTACTCAACATAGAACAAACTTCCTAACTCGTGTTTGATGCAGATCTTATAACAAATTACATTACCCTTACCTGATATTTTTGGATTTCTGAACTCTGTTAATGATTTGGAAAGTTTTTTGTTTGTAGCGTTATGTGGCCCTTAAAATTCAAAAGAGCGCGCAACACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATTGAAGAGGGAGACCCTGATGACAAAAAATGTGTTGTGAAGCTTTTGGATCACTTCAAGCATTCAGGGCCTAATGGCGTGCATGTGTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAATATAGTGACTATCGTGGAGTTCCTCTCTCCATGGTTAAAGAGATATGTTTTCATGTTCTAGTGGGCTTGGATTACTTGCATCGTGAGCTATCTGTCATACACACTGATTTGAAGCCTGAGAATGTGTTACTTCATTCACTGATTGATCCGTCAAAGGATCCAAGGAAATCAGGTGCTCCACTTATCCTTCCAAACACCAAAAATAAGTCCGTGTCTAATAATGACATTATCCAAAACAGTAAAATTGGGAATGGAGATCCGACGAAGAACCAGGAGAAGAAAATGAAGGGAAAGGGTAAGAGGGTGGCTCAAGGCTGTGTTGAGAAGGAAAGTCCAGAGGAATCTGGGGATGATTGTAAAGAACCTGAGCAGGATAATTGTAACAATGTGAAATCCAGTGTAGAATCTGTTGAAAACAAACCCAATAGCTCTTCGAGTAAAGTTGAATCAACACAGACCACTGAAAAGGACCTTGCACCAGGAAACGATGGTCATAAGAAAAGTAGCCGTTCCATGAGAAAGAAGCTGCTGGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACTTATAAACAGTTCACAAATGATATTCAAACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGTTCTAAATACTCAACTCCAGCAGATATGTGGTCCTTTGCTTGCATCTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGCAAGTTCCCCTGTATCGTACTAAGAAACTACTGTTTTGCTTTATTTTGTGCTATTATTATTTGATGTTGGTAAATTTAATTGTGATAATCTTTATTAGTCTTTGAAAACTGATTTGTTACTGAGTGTTTTCTGAACAGAGTGGAAGCTCTTTTGTCCTTAAATTTTTGGTTGGTTATTATACAACTTATTGTTCAACCTTTTCATGCTTTTACAATCATTTACTACCTTTAACGATTTTCTGTCCAAACTGTGAAAAAAGTGCATGCTGCTGGTACTCGATCAAAGTTGGCTGCTGCTGGTACCGTCTCTACAGCTCCCAGCAGTGCCGCTGCTCAATTGAGTCGAACATCCAACCAGCAGCATACACCTTTTTTAATGATTTTGGGCGGTAAATCCAAAGTGAAGATAAAGGATCTGTTTGAAACTTTTAATTAAGTTAAAGGTTCCCGGTACAGTTTTGCATATATTTAATTATCTACCGACTTTAGTAAATTACTTTTTGAAAGAAAAAGGTAAATGCTATACTTTGGAAATAATTATATGCCAAGAGAAGGCTGGGTGAGATATAGTTCTTCTATCTAGATAGAGCTTTAAATTAAGATGCTGAAAGCTTTGCATAAGCTATAGAATTATAATTTATAGTTTGACAATGGGAGATACTATTATGGGGTTCTAAGGCCTAGTAAAATAATACAAAGGATTTGTCTAGGATAGTTCAAAAACATTTACCCCCTAAACATACTATTTTCTGTTTGATGTCTAGACCAATAATATTATCATGCTTGTCTCTTGATTCTCATTTATTTATGCACTCTTTATAACTCTCCTTTGTGCTTAGCATTTGGAACTGGAAAACATAATTTGGCTAAAACATGGCCTGTTGTTTCAACAAGAATTTGTAATCTTCTCAATTTTGAATATGTTTTGCTGTTACCCTGTTGATGATCTTAGAATCGAGGCTTCAGTGTGATTCTTTGTCACTAATTAACGAACATTTTGAATTAATAATTGGAAAAATAGTTAAAATCACCGAGACTTGAAGCCCATATCATATAAAGTTTATATTTTGTCCTCTCAAGATTTACATAAAATATTGACATCGATTTTAATGATAAACCTAGAAGTTTTGACTCAACATAAATTAAAGAGATAGATACAGGTCAAAGCTTCCCATTCTTGTGGAATATCTTTAAAAATTTGAAAAGAATGCATTGGCTTCCTCTCACTGGATTGATAAATGATATCTATTTGTTTTACAGGATCATCTGGCATTGATGATGGAACTTCTTGGAAAGATGCCTAGCAAGGTAGGAAAGTTATCTGCTCTGGTGGAAATTGTGAAGTTACATGTCATTGATTTTACATGTTTTCATTTTCAATAAACACTATTCATTTTTATTTTATTTTTTTATAATTGTGTACTCAATTTGTCTCTTAATGAGTTTTTTTTTTTTTTTTTCCGCTTAAAAAAAACAAAACAATAGGGTATAAAATACTGCATTTCATTCTGAAAATTGGATGTCAACTGCAAAATTTAATCAAATATTTCCTGCAGATTGCACTTGGTGGCCGCTATTCCCGAGATTTTTTCAATAGACATGGTGACTTGAGGCACATCCATGAGTTGCGATTCTGGCCGAAAAAAAAGATTCTGATGGAGAAGTATAGTTTCAGTGAACAAGATGCAAATGACATGGCTGACTTCCTTCTTCCAATACTTGATTTTGACCCTGAAAAGAGGCCAACAGCTGCTCAGTGCCTTACCCATCCATGGATAAGTGCAGGTCCTCGAACTCTTGAGCCCTCACTGACTAGTACACAACCTGATGCAATCAATGAGCATTCATTTGAAAAGAGAAGGAAGGACAAGGAAAAGGCCGAGCAGGAGTTGGTGGAAGTTGGTGTGAGGAATATATCTATTAATGGATCTCCTATGTCACTCAAAAACTCCCGACCCGTAAAGTCATCAACATAG
Protein sequence

>MS.gene049739.t1

MERKGINNDYSSEDEGTEHYRRGGYHAVKLGDAFNNGCYVVQSKLGWGHFSTVWLAWDTLKSRYVALKIQKSAQHYTEAAMDEIKILKQIEEGDPDDKKCVVKLLDHFKHSGPNGVHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICFHVLVGLDYLHRELSVIHTDLKPENVLLHSLIDPSKDPRKSGAPLILPNTKNKSVSNNDIIQNSKIGNGDPTKNQEKKMKGKGKRVAQGCVEKESPEESGDDCKEPEQDNCNNVKSSVESVENKPNSSSSKVESTQTTEKDLAPGNDGHKKSSRSMRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGKMPSKIALGGRYSRDFFNRHGDLRHIHELRFWPKKKILMEKYSFSEQDANDMADFLLPILDFDPEKRPTAAQCLTHPWISAGPRTLEPSLTSTQPDAINEHSFEKRRKDKEKAEQELVEVGVRNISINGSPMSLKNSRPVKSST