Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77771.t1 | XP_003628200.1 | 91.7 | 156 | 13 | 0 | 1 | 156 | 1 | 156 | 1.00E-80 | 309.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77771.t1 | Q9SSK5 | 36.9 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 4.5e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77771.t1 | G7L7T5 | 91.7 | 156 | 13 | 0 | 1 | 156 | 1 | 156 | 7.3e-81 | 309.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene77771 | 0.848264 | 6.85E-60 | -1.69E-46 |
| MS.gene050707 | MS.gene77771 | 0.827098 | 1.89E-54 | -1.69E-46 |
| MS.gene052383 | MS.gene77771 | 0.815391 | 9.47E-52 | -1.69E-46 |
| MS.gene054614 | MS.gene77771 | 0.832017 | 1.20E-55 | -1.69E-46 |
| MS.gene056618 | MS.gene77771 | 0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene05777 | MS.gene77771 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene77771 | 0.858034 | 1.09E-62 | -1.69E-46 |
| MS.gene058386 | MS.gene77771 | 0.85982 | 3.18E-63 | -1.69E-46 |
| MS.gene05926 | MS.gene77771 | 0.818089 | 2.35E-52 | -1.69E-46 |
| MS.gene061003 | MS.gene77771 | 0.802868 | 4.57E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77771.t1 | MTR_8g045490 | 91.667 | 156 | 13 | 0 | 1 | 156 | 1 | 156 | 9.91e-105 | 296 |
| MS.gene77771.t1 | MTR_8g045520 | 82.166 | 157 | 27 | 1 | 1 | 156 | 1 | 157 | 2.59e-92 | 265 |
| MS.gene77771.t1 | MTR_8g045400 | 78.344 | 157 | 32 | 2 | 1 | 156 | 1 | 156 | 3.72e-88 | 254 |
| MS.gene77771.t1 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 3.22e-85 | 246 |
| MS.gene77771.t1 | MTR_8g045695 | 75.163 | 153 | 37 | 1 | 1 | 153 | 1 | 152 | 1.67e-83 | 242 |
| MS.gene77771.t1 | MTR_8g045555 | 75.000 | 152 | 38 | 0 | 1 | 152 | 1 | 152 | 1.03e-81 | 238 |
| MS.gene77771.t1 | MTR_8g045300 | 71.154 | 156 | 44 | 1 | 1 | 155 | 1 | 156 | 1.91e-81 | 237 |
| MS.gene77771.t1 | MTR_8g045735 | 69.935 | 153 | 45 | 1 | 1 | 153 | 1 | 152 | 3.43e-78 | 229 |
| MS.gene77771.t1 | MTR_8g045665 | 70.588 | 153 | 44 | 1 | 1 | 153 | 1 | 152 | 5.49e-77 | 226 |
| MS.gene77771.t1 | MTR_8g045640 | 69.935 | 153 | 45 | 1 | 1 | 153 | 1 | 152 | 2.72e-76 | 224 |
| MS.gene77771.t1 | MTR_8g045560 | 68.627 | 153 | 47 | 1 | 1 | 153 | 1 | 152 | 1.41e-74 | 220 |
| MS.gene77771.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 1.38e-39 | 131 |
| MS.gene77771.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 3.12e-39 | 130 |
| MS.gene77771.t1 | MTR_1g030840 | 37.179 | 156 | 90 | 4 | 1 | 149 | 1 | 155 | 9.36e-28 | 101 |
| MS.gene77771.t1 | MTR_8g012550 | 33.562 | 146 | 94 | 3 | 6 | 150 | 8 | 151 | 1.88e-25 | 95.5 |
| MS.gene77771.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 7 | 152 | 7 | 147 | 3.64e-24 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77771.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 2.52e-25 | 95.5 |
| MS.gene77771.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 2.52e-25 | 95.5 |
| MS.gene77771.t1 | AT1G70890 | 36.913 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 8.35e-25 | 94.0 |
| MS.gene77771.t1 | AT1G70840 | 32.886 | 149 | 97 | 3 | 3 | 149 | 20 | 167 | 1.31e-22 | 88.6 |
| MS.gene77771.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 5.03e-22 | 87.0 |
| MS.gene77771.t1 | AT1G23120 | 30.872 | 149 | 98 | 3 | 1 | 149 | 1 | 144 | 8.92e-22 | 85.9 |
| MS.gene77771.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 8.94e-22 | 87.0 |
| MS.gene77771.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 2.98e-21 | 87.0 |
| MS.gene77771.t1 | AT5G28000 | 32.886 | 149 | 97 | 3 | 3 | 149 | 13 | 160 | 3.50e-21 | 84.7 |
| MS.gene77771.t1 | AT1G23120 | 31.469 | 143 | 93 | 3 | 7 | 149 | 57 | 194 | 3.57e-21 | 85.5 |
| MS.gene77771.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 7.14e-21 | 87.0 |
| MS.gene77771.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 184 | 331 | 2.40e-19 | 83.2 |
| MS.gene77771.t1 | AT1G70870 | 35.762 | 151 | 84 | 4 | 1 | 151 | 1 | 138 | 8.17e-21 | 83.2 |
| MS.gene77771.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 137 | 284 | 1.07e-19 | 83.6 |
| MS.gene77771.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 1.37e-19 | 82.0 |
| MS.gene77771.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.70e-19 | 82.8 |
| MS.gene77771.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 7.56e-18 | 79.0 |
| MS.gene77771.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.70e-19 | 82.8 |
| MS.gene77771.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 7.56e-18 | 79.0 |
| MS.gene77771.t1 | AT4G23670 | 34.641 | 153 | 97 | 3 | 1 | 152 | 1 | 151 | 2.78e-19 | 79.3 |
| MS.gene77771.t1 | AT1G70880 | 30.201 | 149 | 101 | 3 | 3 | 149 | 8 | 155 | 2.10e-18 | 77.4 |
| MS.gene77771.t1 | AT1G23130 | 29.054 | 148 | 103 | 2 | 3 | 149 | 10 | 156 | 6.74e-18 | 76.3 |
| MS.gene77771.t1 | AT2G01520 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 1.74e-16 | 72.0 |
| MS.gene77771.t1 | AT4G23680 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 2.20e-16 | 72.0 |
| MS.gene77771.t1 | AT1G35260 | 28.276 | 145 | 100 | 3 | 7 | 149 | 6 | 148 | 3.83e-16 | 71.2 |
| MS.gene77771.t1 | AT1G14930 | 31.677 | 161 | 93 | 5 | 1 | 153 | 1 | 152 | 4.17e-16 | 71.2 |
| MS.gene77771.t1 | AT4G14060 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.64e-15 | 68.9 |
| MS.gene77771.t1 | AT2G01530 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.45e-15 | 68.9 |
| MS.gene77771.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 4.86e-14 | 65.9 |
| MS.gene77771.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 4.86e-14 | 65.9 |
| MS.gene77771.t1 | AT1G35310 | 26.087 | 138 | 99 | 3 | 13 | 149 | 12 | 147 | 1.11e-13 | 64.7 |
| MS.gene77771.t1 | AT1G30990 | 30.667 | 150 | 100 | 4 | 1 | 149 | 1 | 147 | 3.69e-13 | 63.5 |
| MS.gene77771.t1 | AT1G14940 | 29.333 | 150 | 103 | 3 | 1 | 149 | 1 | 148 | 2.32e-12 | 61.6 |
| MS.gene77771.t1 | AT1G14950 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 1.06e-11 | 59.7 |
| MS.gene77771.t1 | AT3G26460 | 30.769 | 156 | 100 | 6 | 1 | 152 | 1 | 152 | 1.80e-11 | 58.9 |
Find 27 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.1:-59960494 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.1:+59962465 | MS.gene77771:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.1:-59962442 | None:intergenic |
| TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8.1:-59962585 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 8.1:+59962439 | MS.gene77771:CDS |
| AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8.1:-59962527 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.1:+59962383 | MS.gene77771:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.1:+59960538 | MS.gene77771:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.1:+59960497 | MS.gene77771:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 8.1:+59962440 | MS.gene77771:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.1:+59962406 | MS.gene77771:CDS |
| TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8.1:-59962524 | None:intergenic |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.1:+59960513 | MS.gene77771:CDS |
| AATGGCTACATGGAATACTT+TGG | 0.525683 | 8.1:+59962530 | MS.gene77771:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8.1:+59962520 | MS.gene77771:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.1:+59962512 | MS.gene77771:CDS |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.1:+59962446 | MS.gene77771:CDS |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 8.1:-59960471 | None:intergenic |
| GGTAAGCTTAGTACTGAAGT+TGG | 0.593684 | 8.1:+59960385 | MS.gene77771:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.1:+59960487 | MS.gene77771:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.1:+59960524 | MS.gene77771:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8.1:+59962310 | MS.gene77771:intron |
| AGATTGTAGAACTTGTCAGC+GGG | 0.623742 | 8.1:-59960418 | None:intergenic |
| ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8.1:-59962523 | None:intergenic |
| TTCAAAGAAATGGTGCTCTG+CGG | 0.661449 | 8.1:+59960364 | None:intergenic |
| TAGATTGTAGAACTTGTCAG+CGG | 0.690373 | 8.1:-59960419 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8.1:+59962493 | MS.gene77771:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATACAAAAATATTTAT+TGG | + | chr8.1:59962027-59962046 | MS.gene77771:intron | 10.0% |
| !!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8.1:59962067-59962086 | MS.gene77771:intron | 10.0% |
| !!! | GGAATAATAAATATTTTATA+AGG | - | chr8.1:59962001-59962020 | None:intergenic | 10.0% |
| !!! | GTTGTTTTTTTTTTTTTTTT+AGG | - | chr8.1:59961479-59961498 | None:intergenic | 10.0% |
| !!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8.1:59962068-59962087 | MS.gene77771:intron | 10.0% |
| !!! | TATTTTTGTATAGAAAAAAA+AGG | - | chr8.1:59962022-59962041 | None:intergenic | 10.0% |
| !! | AAAAAAAAACAACAATCATT+TGG | + | chr8.1:59961486-59961505 | MS.gene77771:intron | 15.0% |
| !! | AAAAAAAACAACAATCATTT+GGG | + | chr8.1:59961487-59961506 | MS.gene77771:intron | 15.0% |
| !! | AAAATTTGTGAATTAAAAGA+AGG | + | chr8.1:59960789-59960808 | MS.gene77771:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8.1:59961699-59961718 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8.1:59961698-59961717 | MS.gene77771:intron | 15.0% |
| !!! | AAAATTGCATTTTTTTTGTT+AGG | + | chr8.1:59961018-59961037 | MS.gene77771:intron | 15.0% |
| !!! | AAATTGCATTGTTTTTATTA+AGG | - | chr8.1:59960865-59960884 | None:intergenic | 15.0% |
| !!! | AAATTGCATTTTTTTTGTTA+GGG | + | chr8.1:59961019-59961038 | MS.gene77771:intron | 15.0% |
| !!! | AATTGCATTGTTTTTATTAA+GGG | - | chr8.1:59960864-59960883 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAAACTATATTTT+AGG | + | chr8.1:59962139-59962158 | MS.gene77771:intron | 15.0% |
| !! | AATCAAATAAGATGATGATT+TGG | - | chr8.1:59960677-59960696 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr8.1:59961732-59961751 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8.1:59961612-59961631 | None:intergenic | 20.0% |
| !! | AGATTATAAGATCTCAAAAA+AGG | + | chr8.1:59961859-59961878 | MS.gene77771:intron | 20.0% |
| !!! | AATTGCATTTTTTTTGTTAG+GGG | + | chr8.1:59961020-59961039 | MS.gene77771:intron | 20.0% |
| !!! | AGTATTTAAAACTTTAAGAG+AGG | - | chr8.1:59961518-59961537 | None:intergenic | 20.0% |
| !!! | ATTGCATTGTTTTTATTAAG+GGG | - | chr8.1:59960863-59960882 | None:intergenic | 20.0% |
| !!! | TCGTTTTAAAAGTAATACTT+TGG | - | chr8.1:59961675-59961694 | None:intergenic | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.1:59962380-59962399 | MS.gene77771:CDS | 25.0% |
| ! | AAACGAACCAATAGTTAATA+AGG | + | chr8.1:59961689-59961708 | MS.gene77771:intron | 25.0% |
| ! | AACCACAGTTATTCTTTATA+TGG | - | chr8.1:59961976-59961995 | None:intergenic | 25.0% |
| ! | AACCATATAAAGAATAACTG+TGG | + | chr8.1:59961971-59961990 | MS.gene77771:intron | 25.0% |
| ! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8.1:59961097-59961116 | MS.gene77771:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.1:59962440-59962459 | MS.gene77771:CDS | 25.0% |
| ! | TTTGGGAAGAAAAAAAATCA+GGG | - | chr8.1:59961320-59961339 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr8.1:59962129-59962148 | None:intergenic | 25.0% |
| !!! | AACTTTTTTGCAAAGATAAG+GGG | + | chr8.1:59960952-59960971 | MS.gene77771:intron | 25.0% |
| !!! | ATGATTGTTGATTTGTCATT+AGG | - | chr8.1:59961449-59961468 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTTTGTTAGG+GGG | + | chr8.1:59961021-59961040 | MS.gene77771:intron | 25.0% |
| !!! | CAACTTTTTTGCAAAGATAA+GGG | + | chr8.1:59960951-59960970 | MS.gene77771:intron | 25.0% |
| !!! | TTTTGGGAAGAAAAAAAATC+AGG | - | chr8.1:59961321-59961340 | None:intergenic | 25.0% |
| AAGCATAGCTGGAAAAATTA+GGG | - | chr8.1:59960893-59960912 | None:intergenic | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | + | chr8.1:59962406-59962425 | MS.gene77771:CDS | 30.0% | |
| ATTGCTACAATGACAAACAT+AGG | - | chr8.1:59960835-59960854 | None:intergenic | 30.0% | |
| ATTTGTCATTAGGTTCTATG+GGG | - | chr8.1:59961439-59961458 | None:intergenic | 30.0% | |
| CACTCATTTAATGATGTATG+TGG | + | chr8.1:59962164-59962183 | MS.gene77771:intron | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.1:59962439-59962458 | MS.gene77771:CDS | 30.0% | |
| CCCTAAACATGTCAAAAATA+GGG | + | chr8.1:59960991-59961010 | MS.gene77771:intron | 30.0% | |
| CCTAAACATGTCAAAAATAG+GGG | + | chr8.1:59960992-59961011 | MS.gene77771:intron | 30.0% | |
| CGGGAAATATAATCATTCAT+AGG | + | chr8.1:59961403-59961422 | MS.gene77771:intron | 30.0% | |
| CTAAACATGTCAAAAATAGG+GGG | + | chr8.1:59960993-59961012 | MS.gene77771:intron | 30.0% | |
| GATTTGTCATTAGGTTCTAT+GGG | - | chr8.1:59961440-59961459 | None:intergenic | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | - | chr8.1:59960474-59960493 | None:intergenic | 30.0% | |
| TCCCTAAACATGTCAAAAAT+AGG | + | chr8.1:59960990-59961009 | MS.gene77771:intron | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | + | chr8.1:59962493-59962512 | MS.gene77771:CDS | 30.0% | |
| TTAAGCATCTATCGTCAAAA+TGG | - | chr8.1:59961345-59961364 | None:intergenic | 30.0% | |
| TTATAGAGCTATCTTTGCTT+TGG | - | chr8.1:59962588-59962607 | None:intergenic | 30.0% | |
| TTGCTACAATGACAAACATA+GGG | - | chr8.1:59960834-59960853 | None:intergenic | 30.0% | |
| TTGGGAAGAAAAAAAATCAG+GGG | - | chr8.1:59961319-59961338 | None:intergenic | 30.0% | |
| ! | CTATCGTCAAAATGGTTTTT+GGG | - | chr8.1:59961337-59961356 | None:intergenic | 30.0% |
| ! | GTTTGTCATTGTAGCAATTT+TGG | + | chr8.1:59960837-59960856 | MS.gene77771:intron | 30.0% |
| ! | TCTATCGTCAAAATGGTTTT+TGG | - | chr8.1:59961338-59961357 | None:intergenic | 30.0% |
| ! | TGATTTGTCATTAGGTTCTA+TGG | - | chr8.1:59961441-59961460 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr8.1:59961781-59961800 | MS.gene77771:intron | 30.0% |
| !! | AAGCGACACTCATTTTAAAA+TGG | - | chr8.1:59961545-59961564 | None:intergenic | 30.0% |
| !! | TCTAGAAGTTCTAGTTCAAA+TGG | - | chr8.1:59961227-59961246 | None:intergenic | 30.0% |
| !!! | CCCTATTTTTGACATGTTTA+GGG | - | chr8.1:59960994-59961013 | None:intergenic | 30.0% |
| !!! | GACACTCATTTTAAAATGGA+GGG | - | chr8.1:59961541-59961560 | None:intergenic | 30.0% |
| !!! | GCAACTTTTTTGCAAAGATA+AGG | + | chr8.1:59960950-59960969 | MS.gene77771:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr8.1:59961780-59961799 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.1:59960538-59960557 | MS.gene77771:CDS | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.1:59962383-59962402 | MS.gene77771:CDS | 35.0% | |
| AACATAGTCAAAAGGAGAAG+AGG | - | chr8.1:59961380-59961399 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.1:59960497-59960516 | MS.gene77771:CDS | 35.0% | |
| AAGTATTCCATGTAGCCATT+TGG | - | chr8.1:59962530-59962549 | None:intergenic | 35.0% | |
| AATGGCTACATGGAATACTT+TGG | + | chr8.1:59962530-59962549 | MS.gene77771:CDS | 35.0% | |
| AGAACTTCTAGACAAGTACA+TGG | + | chr8.1:59961235-59961254 | MS.gene77771:intron | 35.0% | |
| AGCATAGCTGGAAAAATTAG+GGG | - | chr8.1:59960892-59960911 | None:intergenic | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | + | chr8.1:59962310-59962329 | MS.gene77771:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.1:59960497-59960516 | None:intergenic | 35.0% | |
| ATTAGGTTCTATGGGGAATA+TGG | - | chr8.1:59961432-59961451 | None:intergenic | 35.0% | |
| CAAGCATAGCTGGAAAAATT+AGG | - | chr8.1:59960894-59960913 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.1:59962445-59962464 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr8.1:59960487-59960506 | MS.gene77771:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | + | chr8.1:59962305-59962324 | MS.gene77771:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | - | chr8.1:59962308-59962327 | None:intergenic | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.1:59962446-59962465 | MS.gene77771:CDS | 35.0% | |
| TACATTCGACAAACCAAACA+TGG | + | chr8.1:59961290-59961309 | MS.gene77771:intron | 35.0% | |
| TAGATTGTAGAACTTGTCAG+CGG | - | chr8.1:59960422-59960441 | None:intergenic | 35.0% | |
| TGCTACAATGACAAACATAG+GGG | - | chr8.1:59960833-59960852 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | + | chr8.1:59962242-59962261 | MS.gene77771:intron | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | - | chr8.1:59962303-59962322 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | + | chr8.1:59962241-59962260 | MS.gene77771:intron | 35.0% | |
| ! | CTAATTTTTCCAGCTATGCT+TGG | + | chr8.1:59960892-59960911 | MS.gene77771:intron | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr8.1:59961650-59961669 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr8.1:59961646-59961665 | None:intergenic | 35.0% |
| !! | CTCCTTTTGACTATGTTGAA+CGG | + | chr8.1:59961383-59961402 | MS.gene77771:intron | 35.0% |
| !! | TCCTTTTGACTATGTTGAAC+GGG | + | chr8.1:59961384-59961403 | MS.gene77771:intron | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr8.1:59960665-59960684 | None:intergenic | 35.0% |
| !!! | CCCCTATTTTTGACATGTTT+AGG | - | chr8.1:59960995-59961014 | None:intergenic | 35.0% |
| !!! | CGACACTCATTTTAAAATGG+AGG | - | chr8.1:59961542-59961561 | None:intergenic | 35.0% |
| AAATCAGGGGTAACCATGTT+TGG | - | chr8.1:59961306-59961325 | None:intergenic | 40.0% | |
| AGATTGTAGAACTTGTCAGC+GGG | - | chr8.1:59960421-59960440 | None:intergenic | 40.0% | |
| ATAGTCAAAAGGAGAAGAGG+TGG | - | chr8.1:59961377-59961396 | None:intergenic | 40.0% | |
| ATTCCATGTAGCCATTTGGA+GGG | - | chr8.1:59962526-59962545 | None:intergenic | 40.0% | |
| GCATAGCTGGAAAAATTAGG+GGG | - | chr8.1:59960891-59960910 | None:intergenic | 40.0% | |
| GCTACAATGACAAACATAGG+GGG | - | chr8.1:59960832-59960851 | None:intergenic | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | - | chr8.1:59962302-59962321 | None:intergenic | 40.0% | |
| TAGTTGCTATAAACACCCTC+CGG | + | chr8.1:59962107-59962126 | MS.gene77771:intron | 40.0% | |
| TATTCCATGTAGCCATTTGG+AGG | - | chr8.1:59962527-59962546 | None:intergenic | 40.0% | |
| TCAAATGGCAAATGCCGAAA+TGG | - | chr8.1:59961212-59961231 | None:intergenic | 40.0% | |
| TCCCGTTCAACATAGTCAAA+AGG | - | chr8.1:59961388-59961407 | None:intergenic | 40.0% | |
| TGAAAACTTTGTACACCCTC+TGG | - | chr8.1:59962260-59962279 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr8.1:59962125-59962144 | None:intergenic | 40.0% | |
| TTAGGGGGTCAAAATTGCTA+TGG | + | chr8.1:59961036-59961055 | MS.gene77771:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr8.1:59962126-59962145 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.1:59960513-59960532 | MS.gene77771:CDS | 40.0% |
| ! | GGTAAGCTTAGTACTGAAGT+TGG | + | chr8.1:59960385-59960404 | MS.gene77771:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr8.1:59961647-59961666 | None:intergenic | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.1:59960524-59960543 | MS.gene77771:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8.1:59961785-59961804 | MS.gene77771:intron | 40.0% |
| !!! | GCGATTATGACCCCTTTTTT+GGG | - | chr8.1:59960932-59960951 | None:intergenic | 40.0% |
| !!! | TGCGATTATGACCCCTTTTT+TGG | - | chr8.1:59960933-59960952 | None:intergenic | 40.0% |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.1:59962512-59962531 | MS.gene77771:CDS | 45.0% | |
| TAAACTCACACACAGCTGTG+AGG | + | chr8.1:59961149-59961168 | MS.gene77771:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8.1:59961784-59961803 | MS.gene77771:intron | 45.0% |
| AAATGCCGAAATGGCAAGGC+CGG | - | chr8.1:59961203-59961222 | None:intergenic | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.1:59962465-59962484 | MS.gene77771:CDS | 50.0% | |
| GCTATGGCGGCAAACATAGA+GGG | + | chr8.1:59961052-59961071 | MS.gene77771:intron | 50.0% | |
| GGGGGTCAAAATTGCTATGG+CGG | + | chr8.1:59961039-59961058 | MS.gene77771:intron | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.1:59962520-59962539 | MS.gene77771:CDS | 50.0% | |
| TGCTATGGCGGCAAACATAG+AGG | + | chr8.1:59961051-59961070 | MS.gene77771:intron | 50.0% | |
| TGGCAAATGCCGAAATGGCA+AGG | - | chr8.1:59961207-59961226 | None:intergenic | 50.0% | |
| ACACACAGCTGTGAGGTCTC+GGG | + | chr8.1:59961156-59961175 | MS.gene77771:intron | 55.0% | |
| CAAACCCGAGTCACGACATC+CGG | + | chr8.1:59961181-59961200 | MS.gene77771:intron | 55.0% | |
| CACACACAGCTGTGAGGTCT+CGG | + | chr8.1:59961155-59961174 | MS.gene77771:intron | 55.0% | |
| CCGCCACGTGTCCCAAAAAA+GGG | + | chr8.1:59960918-59960937 | MS.gene77771:intron | 55.0% | |
| CGCCACGTGTCCCAAAAAAG+GGG | + | chr8.1:59960919-59960938 | MS.gene77771:intron | 55.0% | |
| ! | GACATCCGGCCTTGCCATTT+CGG | + | chr8.1:59961195-59961214 | MS.gene77771:intron | 55.0% |
| !!! | CCCTTTTTTGGGACACGTGG+CGG | - | chr8.1:59960921-59960940 | None:intergenic | 55.0% |
| !!! | GACCCCTTTTTTGGGACACG+TGG | - | chr8.1:59960924-59960943 | None:intergenic | 55.0% |
| AAGGCCGGATGTCGTGACTC+GGG | - | chr8.1:59961188-59961207 | None:intergenic | 60.0% | |
| CAAGGCCGGATGTCGTGACT+CGG | - | chr8.1:59961189-59961208 | None:intergenic | 60.0% | |
| GCCGCCACGTGTCCCAAAAA+AGG | + | chr8.1:59960917-59960936 | MS.gene77771:intron | 60.0% | |
| TGGCGGCTTCCAAGCATAGC+TGG | - | chr8.1:59960904-59960923 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59960373 | 59962607 | 59960373 | ID=MS.gene77771 |
| chr8.1 | mRNA | 59960373 | 59962607 | 59960373 | ID=MS.gene77771.t1;Parent=MS.gene77771 |
| chr8.1 | exon | 59960373 | 59960559 | 59960373 | ID=MS.gene77771.t1.exon1;Parent=MS.gene77771.t1 |
| chr8.1 | CDS | 59960373 | 59960559 | 59960373 | ID=cds.MS.gene77771.t1;Parent=MS.gene77771.t1 |
| chr8.1 | exon | 59962324 | 59962607 | 59962324 | ID=MS.gene77771.t1.exon2;Parent=MS.gene77771.t1 |
| chr8.1 | CDS | 59962324 | 59962607 | 59962324 | ID=cds.MS.gene77771.t1;Parent=MS.gene77771.t1 |
| Gene Sequence |
| Protein sequence |
