Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59847.t1 | XP_003628200.1 | 91 | 156 | 14 | 0 | 1 | 156 | 1 | 156 | 2.30E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59847.t1 | Q9SSK5 | 37.6 | 149 | 90 | 3 | 3 | 149 | 7 | 154 | 4.5e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59847.t1 | G7L7T5 | 91.0 | 156 | 14 | 0 | 1 | 156 | 1 | 156 | 1.6e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene59847 | 0.834915 | 2.27E-56 | -1.69E-46 |
| MS.gene051648 | MS.gene59847 | 0.853274 | 2.66E-61 | -1.69E-46 |
| MS.gene052150 | MS.gene59847 | 0.803295 | 3.73E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene59847 | 0.820292 | 7.41E-53 | -1.69E-46 |
| MS.gene053538 | MS.gene59847 | 0.825677 | 4.12E-54 | -1.69E-46 |
| MS.gene056704 | MS.gene59847 | 0.808713 | 2.71E-50 | -1.69E-46 |
| MS.gene05777 | MS.gene59847 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene59847 | 0.876292 | 1.57E-68 | -1.69E-46 |
| MS.gene05894 | MS.gene59847 | 0.843162 | 1.66E-58 | -1.69E-46 |
| MS.gene059424 | MS.gene59847 | 0.830635 | 2.63E-55 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59847.t1 | MTR_8g045490 | 91.026 | 156 | 14 | 0 | 1 | 156 | 1 | 156 | 2.91e-104 | 295 |
| MS.gene59847.t1 | MTR_8g045520 | 80.892 | 157 | 29 | 1 | 1 | 156 | 1 | 157 | 1.30e-91 | 263 |
| MS.gene59847.t1 | MTR_8g045400 | 78.344 | 157 | 32 | 2 | 1 | 156 | 1 | 156 | 8.01e-88 | 253 |
| MS.gene59847.t1 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 1.03e-84 | 245 |
| MS.gene59847.t1 | MTR_8g045695 | 73.856 | 153 | 39 | 1 | 1 | 153 | 1 | 152 | 8.28e-83 | 241 |
| MS.gene59847.t1 | MTR_8g045300 | 71.154 | 156 | 44 | 1 | 1 | 155 | 1 | 156 | 4.68e-81 | 236 |
| MS.gene59847.t1 | MTR_8g045555 | 73.684 | 152 | 40 | 0 | 1 | 152 | 1 | 152 | 6.93e-81 | 236 |
| MS.gene59847.t1 | MTR_8g045735 | 68.627 | 153 | 47 | 1 | 1 | 153 | 1 | 152 | 1.96e-77 | 227 |
| MS.gene59847.t1 | MTR_8g045665 | 69.281 | 153 | 46 | 1 | 1 | 153 | 1 | 152 | 3.66e-76 | 224 |
| MS.gene59847.t1 | MTR_8g045640 | 68.627 | 153 | 47 | 1 | 1 | 153 | 1 | 152 | 1.47e-75 | 222 |
| MS.gene59847.t1 | MTR_8g045560 | 67.320 | 153 | 49 | 1 | 1 | 153 | 1 | 152 | 8.48e-74 | 218 |
| MS.gene59847.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 3.51e-39 | 130 |
| MS.gene59847.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 7.70e-39 | 129 |
| MS.gene59847.t1 | MTR_1g030840 | 37.179 | 156 | 90 | 4 | 1 | 149 | 1 | 155 | 2.15e-27 | 100 |
| MS.gene59847.t1 | MTR_8g012550 | 34.247 | 146 | 93 | 3 | 6 | 150 | 8 | 151 | 1.62e-25 | 95.5 |
| MS.gene59847.t1 | MTR_1g031640 | 37.838 | 148 | 83 | 5 | 7 | 152 | 7 | 147 | 1.92e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59847.t1 | AT5G28010 | 36.242 | 149 | 92 | 3 | 3 | 149 | 15 | 162 | 1.95e-25 | 95.9 |
| MS.gene59847.t1 | AT5G28010 | 36.242 | 149 | 92 | 3 | 3 | 149 | 15 | 162 | 1.95e-25 | 95.9 |
| MS.gene59847.t1 | AT1G70890 | 37.584 | 149 | 90 | 3 | 3 | 149 | 7 | 154 | 5.98e-25 | 94.4 |
| MS.gene59847.t1 | AT1G70840 | 33.557 | 149 | 96 | 3 | 3 | 149 | 20 | 167 | 1.16e-22 | 88.6 |
| MS.gene59847.t1 | AT1G70830 | 34.899 | 149 | 94 | 3 | 3 | 149 | 22 | 169 | 3.42e-22 | 87.4 |
| MS.gene59847.t1 | AT1G70830 | 34.899 | 149 | 94 | 3 | 3 | 149 | 22 | 169 | 6.03e-22 | 87.4 |
| MS.gene59847.t1 | AT1G23120 | 31.544 | 149 | 97 | 3 | 1 | 149 | 1 | 144 | 6.18e-22 | 86.3 |
| MS.gene59847.t1 | AT1G70870 | 36.424 | 151 | 83 | 4 | 1 | 151 | 1 | 138 | 9.80e-22 | 85.5 |
| MS.gene59847.t1 | AT1G70830 | 34.899 | 149 | 94 | 3 | 3 | 149 | 22 | 169 | 2.08e-21 | 87.4 |
| MS.gene59847.t1 | AT5G28000 | 33.557 | 149 | 96 | 3 | 3 | 149 | 13 | 160 | 2.12e-21 | 85.1 |
| MS.gene59847.t1 | AT1G23120 | 32.168 | 143 | 92 | 3 | 7 | 149 | 57 | 194 | 2.12e-21 | 86.3 |
| MS.gene59847.t1 | AT1G70830 | 34.899 | 149 | 94 | 3 | 3 | 149 | 22 | 169 | 4.64e-21 | 87.8 |
| MS.gene59847.t1 | AT1G70830 | 33.557 | 149 | 96 | 3 | 3 | 149 | 184 | 331 | 1.55e-19 | 83.6 |
| MS.gene59847.t1 | AT1G70830 | 33.557 | 149 | 96 | 3 | 3 | 149 | 137 | 284 | 7.38e-20 | 84.0 |
| MS.gene59847.t1 | AT1G70850 | 32.886 | 149 | 97 | 3 | 3 | 149 | 9 | 156 | 1.07e-19 | 82.4 |
| MS.gene59847.t1 | AT1G70850 | 32.886 | 149 | 97 | 3 | 3 | 149 | 9 | 156 | 2.07e-19 | 83.2 |
| MS.gene59847.t1 | AT1G70850 | 33.094 | 139 | 90 | 3 | 13 | 149 | 175 | 312 | 6.69e-18 | 79.0 |
| MS.gene59847.t1 | AT1G70850 | 32.886 | 149 | 97 | 3 | 3 | 149 | 9 | 156 | 2.07e-19 | 83.2 |
| MS.gene59847.t1 | AT1G70850 | 33.094 | 139 | 90 | 3 | 13 | 149 | 175 | 312 | 6.69e-18 | 79.0 |
| MS.gene59847.t1 | AT4G23670 | 34.641 | 153 | 97 | 3 | 1 | 152 | 1 | 151 | 2.87e-19 | 79.3 |
| MS.gene59847.t1 | AT1G70880 | 30.872 | 149 | 100 | 3 | 3 | 149 | 8 | 155 | 1.27e-18 | 77.8 |
| MS.gene59847.t1 | AT1G23130 | 29.730 | 148 | 102 | 2 | 3 | 149 | 10 | 156 | 4.49e-18 | 76.6 |
| MS.gene59847.t1 | AT2G01520 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 1.61e-16 | 72.4 |
| MS.gene59847.t1 | AT4G23680 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 2.00e-16 | 72.0 |
| MS.gene59847.t1 | AT1G35260 | 28.966 | 145 | 99 | 3 | 7 | 149 | 6 | 148 | 2.09e-16 | 72.0 |
| MS.gene59847.t1 | AT1G14930 | 29.870 | 154 | 105 | 3 | 1 | 153 | 1 | 152 | 6.31e-16 | 70.9 |
| MS.gene59847.t1 | AT4G14060 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.12e-15 | 69.3 |
| MS.gene59847.t1 | AT2G01530 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.17e-15 | 68.9 |
| MS.gene59847.t1 | AT1G24020 | 33.129 | 163 | 93 | 4 | 1 | 155 | 1 | 155 | 6.38e-15 | 68.2 |
| MS.gene59847.t1 | AT1G24020 | 33.129 | 163 | 93 | 4 | 1 | 155 | 1 | 155 | 6.38e-15 | 68.2 |
| MS.gene59847.t1 | AT1G35310 | 26.812 | 138 | 98 | 3 | 13 | 149 | 12 | 147 | 5.41e-14 | 65.5 |
| MS.gene59847.t1 | AT1G30990 | 30.667 | 150 | 100 | 4 | 1 | 149 | 1 | 147 | 4.66e-13 | 63.2 |
| MS.gene59847.t1 | AT1G14940 | 29.333 | 150 | 103 | 3 | 1 | 149 | 1 | 148 | 2.13e-12 | 61.6 |
| MS.gene59847.t1 | AT1G14950 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 9.94e-12 | 59.7 |
| MS.gene59847.t1 | AT3G26460 | 30.769 | 156 | 100 | 6 | 1 | 152 | 1 | 152 | 1.57e-11 | 59.3 |
Find 27 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.3:-53967741 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.3:+53969261 | MS.gene59847:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.3:-53969238 | None:intergenic |
| TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8.3:-53969381 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 8.3:+53969235 | MS.gene59847:CDS |
| AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8.3:-53969323 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.3:+53969179 | MS.gene59847:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.3:+53967785 | MS.gene59847:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.3:+53967744 | MS.gene59847:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 8.3:+53969236 | MS.gene59847:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.3:+53969202 | MS.gene59847:CDS |
| TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8.3:-53969320 | None:intergenic |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.3:+53967760 | MS.gene59847:CDS |
| AATGGCTACATGGAATACTT+TGG | 0.525683 | 8.3:+53969326 | MS.gene59847:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8.3:+53969316 | MS.gene59847:CDS |
| GGTAAGCTTAGTACTGAAGT+TGG | 0.532755 | 8.3:+53967632 | MS.gene59847:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.3:+53969308 | MS.gene59847:CDS |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.3:+53969242 | MS.gene59847:CDS |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 8.3:-53967718 | None:intergenic |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.3:+53967734 | MS.gene59847:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.3:+53967771 | MS.gene59847:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8.3:+53969106 | MS.gene59847:intron |
| AGATTGTAGAACTTGTCAGC+GGG | 0.623742 | 8.3:-53967665 | None:intergenic |
| ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8.3:-53969319 | None:intergenic |
| TTCAAAGAAATGGTGCTCTG+TGG | 0.636927 | 8.3:+53967611 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.658576 | 8.3:+53969289 | MS.gene59847:CDS |
| TAGATTGTAGAACTTGTCAG+CGG | 0.690373 | 8.3:-53967666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTTTTTT+AGG | - | chr8.3:53968422-53968441 | None:intergenic | 0.0% |
| !! | AGGAATAATAAATATTTATA+AGG | - | chr8.3:53968947-53968966 | None:intergenic | 10.0% |
| !! | TTCTATACAAAAATATTTAT+TGG | + | chr8.3:53968972-53968991 | MS.gene59847:intron | 10.0% |
| !!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8.3:53969012-53969031 | MS.gene59847:intron | 10.0% |
| !!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8.3:53969013-53969032 | MS.gene59847:intron | 10.0% |
| !!! | TATTTTTGTATAGAAAAAAA+AGG | - | chr8.3:53968967-53968986 | None:intergenic | 10.0% |
| !! | AAAAAAAATCAACAATCATT+TGG | + | chr8.3:53968433-53968452 | MS.gene59847:intron | 15.0% |
| !! | AAAAAAATCAACAATCATTT+GGG | + | chr8.3:53968434-53968453 | MS.gene59847:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8.3:53968645-53968664 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8.3:53968644-53968663 | MS.gene59847:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr8.3:53968621-53968640 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8.3:53968635-53968654 | MS.gene59847:intron | 20.0% |
| !! | AATCAAATAAGATGATGATT+TGG | - | chr8.3:53967924-53967943 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr8.3:53968678-53968697 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8.3:53968558-53968577 | None:intergenic | 20.0% |
| !! | AGATTATAAGATCTCAAAAA+AGG | + | chr8.3:53968805-53968824 | MS.gene59847:intron | 20.0% |
| !!! | AGTATTTAAAACTTTAAGAG+AGG | - | chr8.3:53968465-53968484 | None:intergenic | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.3:53969176-53969195 | MS.gene59847:CDS | 25.0% |
| ! | AACCACAGTTATTCTTTATA+TGG | - | chr8.3:53968922-53968941 | None:intergenic | 25.0% |
| ! | AACCATATAAAGAATAACTG+TGG | + | chr8.3:53968917-53968936 | MS.gene59847:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.3:53969236-53969255 | MS.gene59847:CDS | 25.0% |
| ! | CGAGAAATATAATCATTCAT+AGG | + | chr8.3:53968346-53968365 | MS.gene59847:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr8.3:53969289-53969308 | MS.gene59847:CDS | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | + | chr8.3:53968727-53968746 | MS.gene59847:intron | 25.0% |
| !!! | ATGATTGTTGATTTGTCATT+AGG | - | chr8.3:53968392-53968411 | None:intergenic | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTT+AGG | - | chr8.3:53968726-53968745 | None:intergenic | 25.0% |
| AGATATTGATGAGCACTATA+AGG | + | chr8.3:53969202-53969221 | MS.gene59847:CDS | 30.0% | |
| ATAAGAAAGAAACAAGTGCA+TGG | + | chr8.3:53968058-53968077 | MS.gene59847:intron | 30.0% | |
| ATTTGTCATTAGGTTCTATG+GGG | - | chr8.3:53968382-53968401 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.3:53969235-53969254 | MS.gene59847:CDS | 30.0% | |
| GATTTGTCATTAGGTTCTAT+GGG | - | chr8.3:53968383-53968402 | None:intergenic | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | - | chr8.3:53967721-53967740 | None:intergenic | 30.0% | |
| TTAAGCATCTATCGTCAAAA+TGG | - | chr8.3:53968288-53968307 | None:intergenic | 30.0% | |
| TTATAGAGCTATCTTTGCTT+TGG | - | chr8.3:53969384-53969403 | None:intergenic | 30.0% | |
| TTTGGGAAGGAAAAAAATCA+GGG | - | chr8.3:53968263-53968282 | None:intergenic | 30.0% | |
| ! | CTATCGTCAAAATGGTTTTT+GGG | - | chr8.3:53968280-53968299 | None:intergenic | 30.0% |
| ! | TCTATCGTCAAAATGGTTTT+TGG | - | chr8.3:53968281-53968300 | None:intergenic | 30.0% |
| ! | TGATTTGTCATTAGGTTCTA+TGG | - | chr8.3:53968384-53968403 | None:intergenic | 30.0% |
| !! | AAGCGACACTCATTTTAAAA+TGG | - | chr8.3:53968492-53968511 | None:intergenic | 30.0% |
| !! | TTTTGGGAAGGAAAAAAATC+AGG | - | chr8.3:53968264-53968283 | None:intergenic | 30.0% |
| !!! | GACACTCATTTTAAAATGGA+GGG | - | chr8.3:53968488-53968507 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.3:53967785-53967804 | MS.gene59847:CDS | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.3:53969179-53969198 | MS.gene59847:CDS | 35.0% | |
| AACATAGTCAAAAGGAGAAG+AGG | - | chr8.3:53968323-53968342 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.3:53967744-53967763 | MS.gene59847:CDS | 35.0% | |
| AAGCTGATGATCTAGTTATC+AGG | - | chr8.3:53967841-53967860 | None:intergenic | 35.0% | |
| AAGTATTCCATGTAGCCATT+TGG | - | chr8.3:53969326-53969345 | None:intergenic | 35.0% | |
| AATGGCTACATGGAATACTT+TGG | + | chr8.3:53969326-53969345 | MS.gene59847:CDS | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | + | chr8.3:53969106-53969125 | MS.gene59847:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.3:53967744-53967763 | None:intergenic | 35.0% | |
| ATTAGGTTCTATGGGGAATA+TGG | - | chr8.3:53968375-53968394 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.3:53969241-53969260 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr8.3:53967734-53967753 | MS.gene59847:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | + | chr8.3:53969101-53969120 | MS.gene59847:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | - | chr8.3:53969104-53969123 | None:intergenic | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.3:53969242-53969261 | MS.gene59847:CDS | 35.0% | |
| TACATTCGACAAACCAAACA+TGG | + | chr8.3:53968233-53968252 | MS.gene59847:intron | 35.0% | |
| TAGATTGTAGAACTTGTCAG+CGG | - | chr8.3:53967669-53967688 | None:intergenic | 35.0% | |
| TCAAATGGAAAATGCCGAAA+TGG | - | chr8.3:53968157-53968176 | None:intergenic | 35.0% | |
| TCTAGAAGTCCTAGTTCAAA+TGG | - | chr8.3:53968172-53968191 | None:intergenic | 35.0% | |
| TCTCGTTCAACATAGTCAAA+AGG | - | chr8.3:53968331-53968350 | None:intergenic | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | - | chr8.3:53969099-53969118 | None:intergenic | 35.0% | |
| TTGGGAAGGAAAAAAATCAG+GGG | - | chr8.3:53968262-53968281 | None:intergenic | 35.0% | |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr8.3:53967912-53967931 | None:intergenic | 35.0% |
| !!! | CGACACTCATTTTAAAATGG+AGG | - | chr8.3:53968489-53968508 | None:intergenic | 35.0% |
| !!! | GACACTCATTTTAAAACGGA+GGG | + | chr8.3:53968731-53968750 | MS.gene59847:intron | 35.0% |
| AAATCAGGGGTAACCATGTT+TGG | - | chr8.3:53968249-53968268 | None:intergenic | 40.0% | |
| AGATTGTAGAACTTGTCAGC+GGG | - | chr8.3:53967668-53967687 | None:intergenic | 40.0% | |
| AGGACTTCTAGACAAGTACA+TGG | + | chr8.3:53968180-53968199 | MS.gene59847:intron | 40.0% | |
| ATAGTCAAAAGGAGAAGAGG+TGG | - | chr8.3:53968320-53968339 | None:intergenic | 40.0% | |
| ATTCCATGTAGCCATTTGGA+GGG | - | chr8.3:53969322-53969341 | None:intergenic | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | - | chr8.3:53969098-53969117 | None:intergenic | 40.0% | |
| TATTCCATGTAGCCATTTGG+AGG | - | chr8.3:53969323-53969342 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.3:53967760-53967779 | MS.gene59847:CDS | 40.0% |
| ! | CGGCATTTTCCATTTGAACT+AGG | + | chr8.3:53968160-53968179 | MS.gene59847:intron | 40.0% |
| ! | GGTAAGCTTAGTACTGAAGT+TGG | + | chr8.3:53967632-53967651 | MS.gene59847:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.3:53967771-53967790 | MS.gene59847:CDS | 40.0% |
| !! | CGTCAAAATGGTTTTTGGGA+AGG | - | chr8.3:53968276-53968295 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTAAAACGG+AGG | + | chr8.3:53968730-53968749 | MS.gene59847:intron | 40.0% |
| AAATGCCGAAATGGCAAGGT+CGG | - | chr8.3:53968148-53968167 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.3:53969308-53969327 | MS.gene59847:CDS | 45.0% | |
| TAAACTCACACACAGCTGTG+AGG | + | chr8.3:53968094-53968113 | MS.gene59847:intron | 45.0% | |
| TGGAAAATGCCGAAATGGCA+AGG | - | chr8.3:53968152-53968171 | None:intergenic | 45.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.3:53969261-53969280 | MS.gene59847:CDS | 50.0% | |
| CACACACAGCTGTGAGGTAT+CGG | + | chr8.3:53968100-53968119 | MS.gene59847:intron | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.3:53969316-53969335 | MS.gene59847:CDS | 50.0% | |
| ! | GACGTCCGACCTTGCCATTT+CGG | + | chr8.3:53968140-53968159 | MS.gene59847:intron | 55.0% |
| AAGGTCGGACGTCGTGACTC+GGG | - | chr8.3:53968133-53968152 | None:intergenic | 60.0% | |
| CAAGGTCGGACGTCGTGACT+CGG | - | chr8.3:53968134-53968153 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53967620 | 53969403 | 53967620 | ID=MS.gene59847 |
| chr8.3 | mRNA | 53967620 | 53969403 | 53967620 | ID=MS.gene59847.t1;Parent=MS.gene59847 |
| chr8.3 | exon | 53967620 | 53967806 | 53967620 | ID=MS.gene59847.t1.exon1;Parent=MS.gene59847.t1 |
| chr8.3 | CDS | 53967620 | 53967806 | 53967620 | ID=cds.MS.gene59847.t1;Parent=MS.gene59847.t1 |
| chr8.3 | exon | 53969120 | 53969403 | 53969120 | ID=MS.gene59847.t1.exon2;Parent=MS.gene59847.t1 |
| chr8.3 | CDS | 53969120 | 53969403 | 53969120 | ID=cds.MS.gene59847.t1;Parent=MS.gene59847.t1 |
| Gene Sequence |
| Protein sequence |
