Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05843.t1 | XP_003630858.1 | 97 | 338 | 10 | 0 | 1 | 338 | 58 | 395 | 5.90E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05843.t1 | G7L9Q1 | 97.0 | 338 | 10 | 0 | 1 | 338 | 58 | 395 | 4.3e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene05843 | 0.828 | 1.15E-54 | -1.69E-46 |
| MS.gene05843 | MS.gene06145 | 0.858717 | 6.80E-63 | -1.69E-46 |
| MS.gene05843 | MS.gene063498 | -0.820685 | 6.02E-53 | -1.69E-46 |
| MS.gene05843 | MS.gene53859 | 0.863873 | 1.82E-64 | -1.69E-46 |
| MS.gene05843 | MS.gene69142 | -0.81057 | 1.08E-50 | -1.69E-46 |
| MS.gene05843 | MS.gene77971 | 0.828889 | 6.99E-55 | -1.69E-46 |
| MS.gene05843 | MS.gene77972 | 0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene05843 | MS.gene78629 | 0.813442 | 2.55E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05843.t1 | MTR_8g104260 | 98.225 | 338 | 6 | 0 | 1 | 338 | 58 | 395 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05843.t1 | AT1G73840 | 43.909 | 353 | 160 | 16 | 1 | 338 | 59 | 388 | 3.16e-46 | 161 |
| MS.gene05843.t1 | AT1G73840 | 43.429 | 350 | 160 | 16 | 4 | 338 | 1 | 327 | 1.13e-44 | 155 |
Find 107 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCACTGAAGGCTGATTT+TGG | 0.217216 | 4.4:-2521000 | None:intergenic |
| CCACCGATTGGTGCCAATTT+AGG | 0.222463 | 4.4:+2521346 | MS.gene05843:CDS |
| GGAGCTATTGGTTGAACTTT+TGG | 0.239042 | 4.4:-2520848 | None:intergenic |
| CCACCTTGCACAGGCAATAT+TGG | 0.272411 | 4.4:-2520926 | None:intergenic |
| AGCATGTTGAAAACCTAAAT+TGG | 0.303611 | 4.4:-2521359 | None:intergenic |
| GGTTTGCACTGAAGGTGGTC+TGG | 0.310505 | 4.4:-2521305 | None:intergenic |
| TGGGGAGTCAGATGCCCTTT+AGG | 0.329475 | 4.4:-2521100 | None:intergenic |
| CAGGTTGGAAATATACCATT+TGG | 0.354659 | 4.4:+2522858 | MS.gene05843:intron |
| ATCATCTCAGTCATCTTATC+AGG | 0.369211 | 4.4:+2521569 | MS.gene05843:CDS |
| GAGAATCTAGCACAGCATTC+TGG | 0.381170 | 4.4:+2522954 | MS.gene05843:CDS |
| GGTCTTTGTGTCGGCTGTAC+TGG | 0.384854 | 4.4:-2520887 | None:intergenic |
| AAATTGATAGAGGGTCTTCT+TGG | 0.393175 | 4.4:+2522916 | MS.gene05843:CDS |
| ATTTGGCTTACATGAAAGAT+AGG | 0.403433 | 4.4:-2521409 | None:intergenic |
| AGCACTTGATTTCTTTGTTC+CGG | 0.406131 | 4.4:-2523199 | None:intergenic |
| TCCTCAGGGACCATCATCTA+TGG | 0.406393 | 4.4:+2522977 | MS.gene05843:CDS |
| GTTTGCACTGAAGGTGGTCT+GGG | 0.415268 | 4.4:-2521304 | None:intergenic |
| TTCTTGGATGCCTGGTCCCT+CGG | 0.417764 | 4.4:+2522932 | MS.gene05843:CDS |
| AGCACAGCATTCTGGTCCTC+AGG | 0.420622 | 4.4:+2522962 | MS.gene05843:CDS |
| AATGCCAACTGCCTCGAGTC+AGG | 0.424620 | 4.4:+2521216 | MS.gene05843:CDS |
| AGAGGGTCTTCTTGGATGCC+TGG | 0.426008 | 4.4:+2522924 | MS.gene05843:CDS |
| GGAACAGCAGCATATGAAAC+TGG | 0.426563 | 4.4:-2521019 | None:intergenic |
| GGTCTGGGCTGCGGTGGCAA+TGG | 0.431160 | 4.4:-2521289 | None:intergenic |
| AGCAATGCCTTCTCCATGTC+TGG | 0.434431 | 4.4:-2523130 | None:intergenic |
| TGAGATTGATGACTCGTTGT+AGG | 0.439418 | 4.4:-2521040 | None:intergenic |
| AAATGCCACAACAGCCTAAA+GGG | 0.450959 | 4.4:+2521086 | MS.gene05843:CDS |
| GGATGGAAGGTTTGCACTGA+AGG | 0.452928 | 4.4:-2521313 | None:intergenic |
| AACAGATGCTGGAGCTACTT+GGG | 0.459345 | 4.4:-2521119 | None:intergenic |
| AGGTTGGAAATATACCATTT+GGG | 0.465872 | 4.4:+2522859 | MS.gene05843:intron |
| GAACAGATGCTGGAGCTACT+TGG | 0.467900 | 4.4:-2521120 | None:intergenic |
| GAGGCAGTTGGCATTTGAGT+TGG | 0.469452 | 4.4:-2521208 | None:intergenic |
| CATCAACCATTGCAGACTCC+TGG | 0.476133 | 4.4:+2521241 | MS.gene05843:CDS |
| CTGGGCTGCGGTGGCAATGG+TGG | 0.483339 | 4.4:-2521286 | None:intergenic |
| ACTGAAGGTGGTCTGGGCTG+CGG | 0.496060 | 4.4:-2521298 | None:intergenic |
| GTAGTAGTGCCTGCCCTGGT+GGG | 0.503872 | 4.4:-2521536 | None:intergenic |
| CAAATGCCACAACAGCCTAA+AGG | 0.507130 | 4.4:+2521085 | MS.gene05843:CDS |
| AATGCAATGCAAATTGATAG+AGG | 0.513025 | 4.4:+2522906 | MS.gene05843:CDS |
| GACTGAGATGATTGTTGACT+TGG | 0.515162 | 4.4:-2521558 | None:intergenic |
| TCTGATTTCAGCAGTCAAGC+TGG | 0.516591 | 4.4:+2522882 | MS.gene05843:CDS |
| GCTAGATTCTCCGAGGGACC+AGG | 0.516688 | 4.4:-2522942 | None:intergenic |
| ACAGAGGGTGGAGGTATATG+TGG | 0.520018 | 4.4:-2521160 | None:intergenic |
| GATGATTGTGGAACAGATGC+TGG | 0.524572 | 4.4:-2521130 | None:intergenic |
| ATTGGAGCAGGCTGAACACT+TGG | 0.524643 | 4.4:-2520908 | None:intergenic |
| AGATGCCCTTTAGGCTGTTG+TGG | 0.524650 | 4.4:-2521091 | None:intergenic |
| GGCATTTGAGTTGGATGAAG+TGG | 0.526366 | 4.4:-2521199 | None:intergenic |
| CCTAAATTGGCACCAATCGG+TGG | 0.528144 | 4.4:-2521346 | None:intergenic |
| AAACCTAAATTGGCACCAAT+CGG | 0.529814 | 4.4:-2521349 | None:intergenic |
| CTTGGTAGTAGTGCCTGCCC+TGG | 0.530835 | 4.4:-2521540 | None:intergenic |
| TGCACAGGCAATATTGGAGC+AGG | 0.531217 | 4.4:-2520920 | None:intergenic |
| GGTAGTAGTGCCTGCCCTGG+TGG | 0.531403 | 4.4:-2521537 | None:intergenic |
| GTTGGATCTACGTTCCCACC+AGG | 0.534207 | 4.4:+2521522 | MS.gene05843:CDS |
| AATCAGGCGCAAATCATGCT+TGG | 0.534517 | 4.4:+2520721 | None:intergenic |
| GGTAGGAGATTTATCTGCTC+CGG | 0.535490 | 4.4:-2523175 | None:intergenic |
| CTCAAACTCAAATTCCTCCC+AGG | 0.544437 | 4.4:+2520972 | MS.gene05843:CDS |
| ATCTACGTTCCCACCAGGGC+AGG | 0.545822 | 4.4:+2521527 | MS.gene05843:CDS |
| GATTTCTTTGTTCCGGAGGT+AGG | 0.546980 | 4.4:-2523192 | None:intergenic |
| GCATATGAAACTGGCACTGA+AGG | 0.547468 | 4.4:-2521010 | None:intergenic |
| TCTTGTATGCCACCTTGCAC+AGG | 0.548368 | 4.4:-2520935 | None:intergenic |
| GGAGAAGGCATTGCTTCAGC+AGG | 0.548457 | 4.4:+2523138 | MS.gene05843:CDS |
| TTGCAACGAATGTGCAGCTG+TGG | 0.549837 | 4.4:-2521065 | None:intergenic |
| GAAGGTGGTCTGGGCTGCGG+TGG | 0.560378 | 4.4:-2521295 | None:intergenic |
| GCAGATAAATCTCCTACCTC+CGG | 0.560675 | 4.4:+2523180 | MS.gene05843:CDS |
| ATAATTACCGCAGGAGGCCG+AGG | 0.566844 | 4.4:-2523032 | None:intergenic |
| GCTCCAATATTGCCTGTGCA+AGG | 0.568072 | 4.4:+2520923 | MS.gene05843:CDS |
| CTAAATTGGCACCAATCGGT+GGG | 0.568515 | 4.4:-2521345 | None:intergenic |
| CATGCAGTTGACACCAGACA+TGG | 0.573544 | 4.4:+2523117 | MS.gene05843:intron |
| GATGAATGAACAGAGGGTGG+AGG | 0.579071 | 4.4:-2521169 | None:intergenic |
| GGTGCAAAACCTCCTAGTGT+TGG | 0.579641 | 4.4:+2521504 | MS.gene05843:CDS |
| TGAGCAGAAACCATAGATGA+TGG | 0.580733 | 4.4:-2522987 | None:intergenic |
| TGCGCCTGACTCGAGGCAGT+TGG | 0.581868 | 4.4:-2521220 | None:intergenic |
| GTGCTGCTAATCAGCCTCCT+CGG | 0.587990 | 4.4:+2523015 | MS.gene05843:CDS |
| GGCGCAAATCATGCTTGGAA+TGG | 0.588794 | 4.4:+2520726 | None:intergenic |
| TCTATGGTTTCTGCTCAGAT+CGG | 0.590710 | 4.4:+2522993 | MS.gene05843:CDS |
| TGGAAGGTTTGCACTGAAGG+TGG | 0.591348 | 4.4:-2521310 | None:intergenic |
| CATGAAAGATAGGCGGAGGA+AGG | 0.594973 | 4.4:-2521399 | None:intergenic |
| TGTGGAAGTTGTGATGATTG+TGG | 0.596173 | 4.4:-2521142 | None:intergenic |
| TGAACACTTGGTCTTTGTGT+CGG | 0.602044 | 4.4:-2520896 | None:intergenic |
| TCAGCCTCCTCGGCCTCCTG+CGG | 0.602819 | 4.4:+2523025 | MS.gene05843:CDS |
| CTGCTGAAATCAGACCCAAA+TGG | 0.603135 | 4.4:-2522873 | None:intergenic |
| GCACAGCATTCTGGTCCTCA+GGG | 0.603604 | 4.4:+2522963 | MS.gene05843:CDS |
| AGAGGCATATGTGAAAATCC+AGG | 0.603771 | 4.4:-2521259 | None:intergenic |
| AAATTGGCACCAATCGGTGG+GGG | 0.604689 | 4.4:-2521343 | None:intergenic |
| TAAATTGGCACCAATCGGTG+GGG | 0.616828 | 4.4:-2521344 | None:intergenic |
| ATGCAATGCAAATTGATAGA+GGG | 0.619745 | 4.4:+2522907 | MS.gene05843:CDS |
| TGGTTGATGCGCCTGACTCG+AGG | 0.620870 | 4.4:-2521227 | None:intergenic |
| CTTACATGAAAGATAGGCGG+AGG | 0.622293 | 4.4:-2521403 | None:intergenic |
| ACAGATGCTGGAGCTACTTG+GGG | 0.629033 | 4.4:-2521118 | None:intergenic |
| TTCACAATAATTACCGCAGG+AGG | 0.629072 | 4.4:-2523038 | None:intergenic |
| ACTTGATTTCTTTGTTCCGG+AGG | 0.637553 | 4.4:-2523196 | None:intergenic |
| GGTGGCAATGGTGGTTGCAG+AGG | 0.638987 | 4.4:-2521277 | None:intergenic |
| GGTGGCATACAAGATCAAGC+AGG | 0.642519 | 4.4:+2520944 | MS.gene05843:CDS |
| AACGTAGATCCAACACTAGG+AGG | 0.646821 | 4.4:-2521513 | None:intergenic |
| TGCAACGAATGTGCAGCTGT+GGG | 0.650445 | 4.4:-2521064 | None:intergenic |
| TGCTGTGCTAGATTCTCCGA+GGG | 0.654352 | 4.4:-2522948 | None:intergenic |
| ATTACCGCAGGAGGCCGAGG+AGG | 0.656048 | 4.4:-2523029 | None:intergenic |
| GAAGATGAATGAACAGAGGG+TGG | 0.672837 | 4.4:-2521172 | None:intergenic |
| GGGAACGTAGATCCAACACT+AGG | 0.673989 | 4.4:-2521516 | None:intergenic |
| TGGCTTACATGAAAGATAGG+CGG | 0.674410 | 4.4:-2521406 | None:intergenic |
| TTGGATCTACGTTCCCACCA+GGG | 0.674955 | 4.4:+2521523 | MS.gene05843:CDS |
| TGTGAAGATGAATGAACAGA+GGG | 0.681536 | 4.4:-2521175 | None:intergenic |
| AATGGTGCAGTCGCAACAAG+CGG | 0.683239 | 4.4:+2520744 | MS.gene05843:CDS |
| GTTGACACCAGACATGGAGA+AGG | 0.688888 | 4.4:+2523123 | MS.gene05843:intron |
| ATGCTGTGCTAGATTCTCCG+AGG | 0.691552 | 4.4:-2522949 | None:intergenic |
| CCAATATTGCCTGTGCAAGG+TGG | 0.694856 | 4.4:+2520926 | MS.gene05843:CDS |
| GAAAATCCAGGAGTCTGCAA+TGG | 0.697860 | 4.4:-2521247 | None:intergenic |
| GCAGGTCATGAGTCTCACAC+CGG | 0.699959 | 4.4:+2523156 | MS.gene05843:CDS |
| ACCATAGATGATGGTCCCTG+AGG | 0.710726 | 4.4:-2522978 | None:intergenic |
| CTGTGAAGATGAATGAACAG+AGG | 0.739097 | 4.4:-2521176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTAAACTGAAATATT+TGG | - | chr4.4:2521429-2521448 | None:intergenic | 15.0% |
| !! | TATACAAACAAAATTATCTT+TGG | + | chr4.4:2521831-2521850 | MS.gene05843:intron | 15.0% |
| !!! | TATTTATTGATGAAATTTTC+AGG | + | chr4.4:2521479-2521498 | MS.gene05843:intron | 15.0% |
| !!! | TTCAATATATATTTTTGACA+TGG | - | chr4.4:2522053-2522072 | None:intergenic | 15.0% |
| !! | ACAAGTAAATCTAAGTAAAA+TGG | + | chr4.4:2522761-2522780 | MS.gene05843:intron | 20.0% |
| !! | TTATGTCAATATGAAGATTA+CGG | + | chr4.4:2522468-2522487 | MS.gene05843:intron | 20.0% |
| !!! | AAAATTATCTTTGGTTTACA+TGG | + | chr4.4:2521840-2521859 | MS.gene05843:intron | 20.0% |
| ! | ATTTCTGTCAAACAAAAAGA+AGG | + | chr4.4:2522382-2522401 | MS.gene05843:intron | 25.0% |
| ! | CAACTCAAGATAAAAAACTA+TGG | - | chr4.4:2521901-2521920 | None:intergenic | 25.0% |
| ! | GTGGCATCAAAATATATTAT+TGG | + | chr4.4:2521661-2521680 | MS.gene05843:intron | 25.0% |
| ! | TAAAATCACCAAAATCAACT+TGG | - | chr4.4:2522671-2522690 | None:intergenic | 25.0% |
| ! | TAGATTTGCATGCTAATAAA+TGG | + | chr4.4:2520812-2520831 | MS.gene05843:intron | 25.0% |
| ! | TATGTCAATATGAAGATTAC+GGG | + | chr4.4:2522469-2522488 | MS.gene05843:intron | 25.0% |
| ! | TTTAGACTTGAAAACTATGT+TGG | + | chr4.4:2521614-2521633 | MS.gene05843:intron | 25.0% |
| !! | CTGTTTGTAGTCTTTAATTT+GGG | - | chr4.4:2522131-2522150 | None:intergenic | 25.0% |
| !!! | TGTTTGTAGTCTTTAATTTG+GGG | - | chr4.4:2522130-2522149 | None:intergenic | 25.0% |
| AATGACAGCAAAATAAAGAG+AGG | - | chr4.4:2520776-2520795 | None:intergenic | 30.0% | |
| AATGCAATGCAAATTGATAG+AGG | + | chr4.4:2522906-2522925 | MS.gene05843:CDS | 30.0% | |
| AGCATGTTGAAAACCTAAAT+TGG | - | chr4.4:2521362-2521381 | None:intergenic | 30.0% | |
| AGGTTGGAAATATACCATTT+GGG | + | chr4.4:2522859-2522878 | MS.gene05843:intron | 30.0% | |
| AGTAGCAGTGGAAAAAAAAA+TGG | + | chr4.4:2522213-2522232 | MS.gene05843:intron | 30.0% | |
| ATGCAATGCAAATTGATAGA+GGG | + | chr4.4:2522907-2522926 | MS.gene05843:CDS | 30.0% | |
| CAAAAAGAAGGTAAATCACA+AGG | + | chr4.4:2522394-2522413 | MS.gene05843:intron | 30.0% | |
| GCTGTTTGTAGTCTTTAATT+TGG | - | chr4.4:2522132-2522151 | None:intergenic | 30.0% | |
| TAATTCACAATAATTACCGC+AGG | - | chr4.4:2523044-2523063 | None:intergenic | 30.0% | |
| TATTTCGCAATTGAGTTAGT+CGG | + | chr4.4:2522605-2522624 | MS.gene05843:intron | 30.0% | |
| TGTTTAATTAACTAGCATGC+TGG | + | chr4.4:2522631-2522650 | MS.gene05843:intron | 30.0% | |
| TTATTCCGAAAATGCTATAG+TGG | + | chr4.4:2521935-2521954 | MS.gene05843:intron | 30.0% | |
| ! | ATAGTGGAATGACAGATAAT+TGG | + | chr4.4:2521951-2521970 | MS.gene05843:intron | 30.0% |
| ! | ATTTGGCTTACATGAAAGAT+AGG | - | chr4.4:2521412-2521431 | None:intergenic | 30.0% |
| ! | TATTGTACTGATGATTCTGA+AGG | + | chr4.4:2522506-2522525 | MS.gene05843:intron | 30.0% |
| ! | TCATTCCACTATAGCATTTT+CGG | - | chr4.4:2521943-2521962 | None:intergenic | 30.0% |
| !! | AATTTAGGTTTTCAACATGC+TGG | + | chr4.4:2521361-2521380 | MS.gene05843:CDS | 30.0% |
| !! | TATTGATGAAATTTTCAGGC+TGG | + | chr4.4:2521483-2521502 | MS.gene05843:intron | 30.0% |
| !! | TGTGATTGCTTTATTTCTGA+TGG | - | chr4.4:2522342-2522361 | None:intergenic | 30.0% |
| !!! | GAAAGTACCTTTTAGATTCA+CGG | + | chr4.4:2521862-2521881 | MS.gene05843:intron | 30.0% |
| AAACCTAAATTGGCACCAAT+CGG | - | chr4.4:2521352-2521371 | None:intergenic | 35.0% | |
| AAACCTTGGTCTCAATTCTT+TGG | - | chr4.4:2522240-2522259 | None:intergenic | 35.0% | |
| AAATTGATAGAGGGTCTTCT+TGG | + | chr4.4:2522916-2522935 | MS.gene05843:CDS | 35.0% | |
| ACCAAAATCAACTTGGATTG+AGG | - | chr4.4:2522664-2522683 | None:intergenic | 35.0% | |
| AGAGAATATCAATAAGCTGC+AGG | - | chr4.4:2523088-2523107 | None:intergenic | 35.0% | |
| AGCACTTGATTTCTTTGTTC+CGG | - | chr4.4:2523202-2523221 | None:intergenic | 35.0% | |
| AGCATGCAAATCTATACCAA+AGG | - | chr4.4:2520806-2520825 | None:intergenic | 35.0% | |
| AGGTTGAAACCAATTAACAC+CGG | + | chr4.4:2522526-2522545 | MS.gene05843:intron | 35.0% | |
| AGTTGCATAGATCAGAAATG+GGG | + | chr4.4:2522434-2522453 | MS.gene05843:intron | 35.0% | |
| ATCAGAAATGGGGTAAAGAT+GGG | + | chr4.4:2522444-2522463 | MS.gene05843:intron | 35.0% | |
| ATCATCTCAGTCATCTTATC+AGG | + | chr4.4:2521569-2521588 | MS.gene05843:CDS | 35.0% | |
| CATGAATCCAAAACTCATGA+TGG | - | chr4.4:2521694-2521713 | None:intergenic | 35.0% | |
| CATTTCACCGTGAATCTAAA+AGG | - | chr4.4:2521872-2521891 | None:intergenic | 35.0% | |
| GAAAACTATGTTGGTACCAT+GGG | + | chr4.4:2521623-2521642 | MS.gene05843:intron | 35.0% | |
| GAGTTGCATAGATCAGAAAT+GGG | + | chr4.4:2522433-2522452 | MS.gene05843:intron | 35.0% | |
| GATTCTGCTGCAGAAAAAAT+AGG | - | chr4.4:2521737-2521756 | None:intergenic | 35.0% | |
| GCTAATAAATGGTTGCTTCT+AGG | + | chr4.4:2520823-2520842 | MS.gene05843:intron | 35.0% | |
| TCATCAGTACAATATGACAG+CGG | - | chr4.4:2522500-2522519 | None:intergenic | 35.0% | |
| TGAAAACTATGTTGGTACCA+TGG | + | chr4.4:2521622-2521641 | MS.gene05843:intron | 35.0% | |
| TGAGTTGCATAGATCAGAAA+TGG | + | chr4.4:2522432-2522451 | MS.gene05843:intron | 35.0% | |
| TGCTGCAGAAAAAATAGGAT+TGG | - | chr4.4:2521732-2521751 | None:intergenic | 35.0% | |
| TGTGAAGATGAATGAACAGA+GGG | - | chr4.4:2521178-2521197 | None:intergenic | 35.0% | |
| ! | CAGGTTGGAAATATACCATT+TGG | + | chr4.4:2522858-2522877 | MS.gene05843:intron | 35.0% |
| ! | CTTTACACCATCATGAGTTT+TGG | + | chr4.4:2521684-2521703 | MS.gene05843:intron | 35.0% |
| ! | GTATATTTTTCTCCTCCTTC+CGG | - | chr4.4:2522548-2522567 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTCACTACTATT+AGG | - | chr4.4:2521780-2521799 | None:intergenic | 35.0% |
| !!! | ACCTCAATCCAAGTTGATTT+TGG | + | chr4.4:2522660-2522679 | MS.gene05843:intron | 35.0% |
| !!! | TGATTGTTTTGAGGAGCTAT+TGG | - | chr4.4:2520863-2520882 | None:intergenic | 35.0% |
| AAATGCCACAACAGCCTAAA+GGG | + | chr4.4:2521086-2521105 | MS.gene05843:CDS | 40.0% | |
| AAGCTGCAGGACAATTTCAA+GGG | - | chr4.4:2523075-2523094 | None:intergenic | 40.0% | |
| ACTTGATTTCTTTGTTCCGG+AGG | - | chr4.4:2523199-2523218 | None:intergenic | 40.0% | |
| CTGTGAAGATGAATGAACAG+AGG | - | chr4.4:2521179-2521198 | None:intergenic | 40.0% | |
| GATCAGAAATGGGGTAAAGA+TGG | + | chr4.4:2522443-2522462 | MS.gene05843:intron | 40.0% | |
| GCAGCAATGACAAATTTGTC+AGG | - | chr4.4:2522580-2522599 | None:intergenic | 40.0% | |
| GCATATTTCGCTGACAACTA+CGG | - | chr4.4:2522304-2522323 | None:intergenic | 40.0% | |
| GTATGTTGTGCTACAACTGT+TGG | + | chr4.4:2521591-2521610 | MS.gene05843:intron | 40.0% | |
| TAAGCTGCAGGACAATTTCA+AGG | - | chr4.4:2523076-2523095 | None:intergenic | 40.0% | |
| TAGTTGTCAGCGAAATATGC+AGG | + | chr4.4:2522304-2522323 | MS.gene05843:intron | 40.0% | |
| TCACACATCACAACAAACCT+TGG | - | chr4.4:2522254-2522273 | None:intergenic | 40.0% | |
| TCTATGGTTTCTGCTCAGAT+CGG | + | chr4.4:2522993-2523012 | MS.gene05843:CDS | 40.0% | |
| TGAAACCAATTAACACCGGA+AGG | + | chr4.4:2522530-2522549 | MS.gene05843:intron | 40.0% | |
| TGAGCAGAAACCATAGATGA+TGG | - | chr4.4:2522990-2523009 | None:intergenic | 40.0% | |
| TGGCTTACATGAAAGATAGG+CGG | - | chr4.4:2521409-2521428 | None:intergenic | 40.0% | |
| TGTGGAAGTTGTGATGATTG+TGG | - | chr4.4:2521145-2521164 | None:intergenic | 40.0% | |
| TTCACAATAATTACCGCAGG+AGG | - | chr4.4:2523041-2523060 | None:intergenic | 40.0% | |
| ! | AGAGGCATATGTGAAAATCC+AGG | - | chr4.4:2521262-2521281 | None:intergenic | 40.0% |
| ! | GACTGAGATGATTGTTGACT+TGG | - | chr4.4:2521561-2521580 | None:intergenic | 40.0% |
| ! | TGAACACTTGGTCTTTGTGT+CGG | - | chr4.4:2520899-2520918 | None:intergenic | 40.0% |
| ! | TGAGATTGATGACTCGTTGT+AGG | - | chr4.4:2521043-2521062 | None:intergenic | 40.0% |
| ! | TGTGATGTGTGATGATGCAA+AGG | + | chr4.4:2522262-2522281 | MS.gene05843:intron | 40.0% |
| ! | TTAGGTTTTCAACATGCTGG+TGG | + | chr4.4:2521364-2521383 | MS.gene05843:CDS | 40.0% |
| !! | ACTGGTTGCTGATTGTTTTG+AGG | - | chr4.4:2520872-2520891 | None:intergenic | 40.0% |
| !! | GAAGTCATGCTTTTTGTGTC+AGG | + | chr4.4:2522839-2522858 | MS.gene05843:intron | 40.0% |
| !! | GGAGCTATTGGTTGAACTTT+TGG | - | chr4.4:2520851-2520870 | None:intergenic | 40.0% |
| !! | TCATGCTTTTTGTGTCAGGT+TGG | + | chr4.4:2522843-2522862 | MS.gene05843:intron | 40.0% |
| !!! | GCTGTCATTTTCACAACCTT+TGG | + | chr4.4:2520787-2520806 | MS.gene05843:intron | 40.0% |
| AACAGATGCTGGAGCTACTT+GGG | - | chr4.4:2521122-2521141 | None:intergenic | 45.0% | |
| AACCAATTAACACCGGAAGG+AGG | + | chr4.4:2522533-2522552 | MS.gene05843:intron | 45.0% | |
| AACGTAGATCCAACACTAGG+AGG | - | chr4.4:2521516-2521535 | None:intergenic | 45.0% | |
| CAAATGCCACAACAGCCTAA+AGG | + | chr4.4:2521085-2521104 | MS.gene05843:CDS | 45.0% | |
| CTAAATTGGCACCAATCGGT+GGG | - | chr4.4:2521348-2521367 | None:intergenic | 45.0% | |
| CTCAAACTCAAATTCCTCCC+AGG | + | chr4.4:2520972-2520991 | MS.gene05843:CDS | 45.0% | |
| CTGCTGAAATCAGACCCAAA+TGG | - | chr4.4:2522876-2522895 | None:intergenic | 45.0% | |
| CTTACATGAAAGATAGGCGG+AGG | - | chr4.4:2521406-2521425 | None:intergenic | 45.0% | |
| GAAAATCCAGGAGTCTGCAA+TGG | - | chr4.4:2521250-2521269 | None:intergenic | 45.0% | |
| GAAGATGAATGAACAGAGGG+TGG | - | chr4.4:2521175-2521194 | None:intergenic | 45.0% | |
| GAGAATCTAGCACAGCATTC+TGG | + | chr4.4:2522954-2522973 | MS.gene05843:CDS | 45.0% | |
| GATGATTGTGGAACAGATGC+TGG | - | chr4.4:2521133-2521152 | None:intergenic | 45.0% | |
| GATTTCTTTGTTCCGGAGGT+AGG | - | chr4.4:2523195-2523214 | None:intergenic | 45.0% | |
| GCAGATAAATCTCCTACCTC+CGG | + | chr4.4:2523180-2523199 | MS.gene05843:CDS | 45.0% | |
| GGAACAGCAGCATATGAAAC+TGG | - | chr4.4:2521022-2521041 | None:intergenic | 45.0% | |
| GGACCAAAGAATTGAGACCA+AGG | + | chr4.4:2522234-2522253 | MS.gene05843:intron | 45.0% | |
| GGTAGGAGATTTATCTGCTC+CGG | - | chr4.4:2523178-2523197 | None:intergenic | 45.0% | |
| GTGACACTTCAGACGATGTT+AGG | + | chr4.4:2521787-2521806 | MS.gene05843:intron | 45.0% | |
| TAAATTGGCACCAATCGGTG+GGG | - | chr4.4:2521347-2521366 | None:intergenic | 45.0% | |
| TCGGCTACATGGATCCTAAT+GGG | + | chr4.4:2522020-2522039 | MS.gene05843:intron | 45.0% | |
| TCTGATTTCAGCAGTCAAGC+TGG | + | chr4.4:2522882-2522901 | MS.gene05843:CDS | 45.0% | |
| TGTGAAGTGTGAAGTAGCAG+TGG | + | chr4.4:2522201-2522220 | MS.gene05843:intron | 45.0% | |
| TTGTCAGCGAAATATGCAGG+TGG | + | chr4.4:2522307-2522326 | MS.gene05843:intron | 45.0% | |
| ! | CATTTTCGGAATAAGCCACC+AGG | - | chr4.4:2521929-2521948 | None:intergenic | 45.0% |
| ! | GCATATGAAACTGGCACTGA+AGG | - | chr4.4:2521013-2521032 | None:intergenic | 45.0% |
| ! | GTGTGATGATGCAAAGGAGT+GGG | + | chr4.4:2522268-2522287 | MS.gene05843:intron | 45.0% |
| ! | TGTGTGATGATGCAAAGGAG+TGG | + | chr4.4:2522267-2522286 | MS.gene05843:intron | 45.0% |
| ! | TTATCTTGAGTTGCTGCTCC+TGG | + | chr4.4:2521908-2521927 | MS.gene05843:intron | 45.0% |
| !! | GGCATTTGAGTTGGATGAAG+TGG | - | chr4.4:2521202-2521221 | None:intergenic | 45.0% |
| !!! | AGGCTGATTTTGGTGTTTCC+TGG | - | chr4.4:2520993-2521012 | None:intergenic | 45.0% |
| !!! | GGCTGATTTTGGTGTTTCCT+GGG | - | chr4.4:2520992-2521011 | None:intergenic | 45.0% |
| !!! | TGATTTTGGTGTTTCCTGGG+AGG | - | chr4.4:2520989-2521008 | None:intergenic | 45.0% |
| AAATTGGCACCAATCGGTGG+GGG | - | chr4.4:2521346-2521365 | None:intergenic | 50.0% | |
| AATGGTGCAGTCGCAACAAG+CGG | + | chr4.4:2520744-2520763 | MS.gene05843:CDS | 50.0% | |
| ACAGATGCTGGAGCTACTTG+GGG | - | chr4.4:2521121-2521140 | None:intergenic | 50.0% | |
| ACCAATCGGTGGGGGATATT+GGG | - | chr4.4:2521338-2521357 | None:intergenic | 50.0% | |
| AGATGCCCTTTAGGCTGTTG+TGG | - | chr4.4:2521094-2521113 | None:intergenic | 50.0% | |
| AGCAATGCCTTCTCCATGTC+TGG | - | chr4.4:2523133-2523152 | None:intergenic | 50.0% | |
| ATGCTGTGCTAGATTCTCCG+AGG | - | chr4.4:2522952-2522971 | None:intergenic | 50.0% | |
| ATTGGAGCAGGCTGAACACT+TGG | - | chr4.4:2520911-2520930 | None:intergenic | 50.0% | |
| CAGAGCATGACAAACACCCA+TGG | - | chr4.4:2521642-2521661 | None:intergenic | 50.0% | |
| CATCAACCATTGCAGACTCC+TGG | + | chr4.4:2521241-2521260 | MS.gene05843:CDS | 50.0% | |
| CATGAAAGATAGGCGGAGGA+AGG | - | chr4.4:2521402-2521421 | None:intergenic | 50.0% | |
| CATGCAGTTGACACCAGACA+TGG | + | chr4.4:2523117-2523136 | MS.gene05843:intron | 50.0% | |
| CCAATATTGCCTGTGCAAGG+TGG | + | chr4.4:2520926-2520945 | MS.gene05843:CDS | 50.0% | |
| CCACCTTGCACAGGCAATAT+TGG | - | chr4.4:2520929-2520948 | None:intergenic | 50.0% | |
| CCTAAATTGGCACCAATCGG+TGG | - | chr4.4:2521349-2521368 | None:intergenic | 50.0% | |
| CTTATCCCACCAAGTGGTGT+CGG | + | chr4.4:2522001-2522020 | MS.gene05843:intron | 50.0% | |
| GAACAGATGCTGGAGCTACT+TGG | - | chr4.4:2521123-2521142 | None:intergenic | 50.0% | |
| GACATGGCAGACATCCCATT+AGG | - | chr4.4:2522037-2522056 | None:intergenic | 50.0% | |
| GAGGCAGTTGGCATTTGAGT+TGG | - | chr4.4:2521211-2521230 | None:intergenic | 50.0% | |
| GATGAATGAACAGAGGGTGG+AGG | - | chr4.4:2521172-2521191 | None:intergenic | 50.0% | |
| GCTCCAATATTGCCTGTGCA+AGG | + | chr4.4:2520923-2520942 | MS.gene05843:CDS | 50.0% | |
| GGATGGAAGGTTTGCACTGA+AGG | - | chr4.4:2521316-2521335 | None:intergenic | 50.0% | |
| GGGAACGTAGATCCAACACT+AGG | - | chr4.4:2521519-2521538 | None:intergenic | 50.0% | |
| GGTGCAAAACCTCCTAGTGT+TGG | + | chr4.4:2521504-2521523 | MS.gene05843:CDS | 50.0% | |
| GGTGGCATACAAGATCAAGC+AGG | + | chr4.4:2520944-2520963 | MS.gene05843:CDS | 50.0% | |
| GTCGGCTACATGGATCCTAA+TGG | + | chr4.4:2522019-2522038 | MS.gene05843:intron | 50.0% | |
| GTTGACACCAGACATGGAGA+AGG | + | chr4.4:2523123-2523142 | MS.gene05843:intron | 50.0% | |
| GTTTGCACTGAAGGTGGTCT+GGG | - | chr4.4:2521307-2521326 | None:intergenic | 50.0% | |
| TCCTCAGGGACCATCATCTA+TGG | + | chr4.4:2522977-2522996 | MS.gene05843:CDS | 50.0% | |
| TCTTGTATGCCACCTTGCAC+AGG | - | chr4.4:2520938-2520957 | None:intergenic | 50.0% | |
| TGCAACGAATGTGCAGCTGT+GGG | - | chr4.4:2521067-2521086 | None:intergenic | 50.0% | |
| TGCACAGGCAATATTGGAGC+AGG | - | chr4.4:2520923-2520942 | None:intergenic | 50.0% | |
| TGCTGTGCTAGATTCTCCGA+GGG | - | chr4.4:2522951-2522970 | None:intergenic | 50.0% | |
| TGGAAGGTTTGCACTGAAGG+TGG | - | chr4.4:2521313-2521332 | None:intergenic | 50.0% | |
| TGGGTGTTTGTCATGCTCTG+TGG | + | chr4.4:2521642-2521661 | MS.gene05843:intron | 50.0% | |
| TTGCAACGAATGTGCAGCTG+TGG | - | chr4.4:2521068-2521087 | None:intergenic | 50.0% | |
| TTGGATCTACGTTCCCACCA+GGG | + | chr4.4:2521523-2521542 | MS.gene05843:CDS | 50.0% | |
| ! | ACAGAGGGTGGAGGTATATG+TGG | - | chr4.4:2521163-2521182 | None:intergenic | 50.0% |
| ! | ACCATAGATGATGGTCCCTG+AGG | - | chr4.4:2522981-2523000 | None:intergenic | 50.0% |
| ! | CAAAGCCTTATCCCACCAAG+TGG | + | chr4.4:2521995-2522014 | MS.gene05843:intron | 50.0% |
| ! | CACTTGGTGGGATAAGGCTT+TGG | - | chr4.4:2521997-2522016 | None:intergenic | 50.0% |
| ! | CTCCTCCTTCCGGTGTTAAT+TGG | - | chr4.4:2522538-2522557 | None:intergenic | 50.0% |
| !! | CCACCGATTGGTGCCAATTT+AGG | + | chr4.4:2521346-2521365 | MS.gene05843:CDS | 50.0% |
| !! | CTGGCACTGAAGGCTGATTT+TGG | - | chr4.4:2521003-2521022 | None:intergenic | 50.0% |
| AATGCCAACTGCCTCGAGTC+AGG | + | chr4.4:2521216-2521235 | MS.gene05843:CDS | 55.0% | |
| AGAGGGTCTTCTTGGATGCC+TGG | + | chr4.4:2522924-2522943 | MS.gene05843:CDS | 55.0% | |
| AGCACAGCATTCTGGTCCTC+AGG | + | chr4.4:2522962-2522981 | MS.gene05843:CDS | 55.0% | |
| ATAATTACCGCAGGAGGCCG+AGG | - | chr4.4:2523035-2523054 | None:intergenic | 55.0% | |
| ATGTAGCCGACACCACTTGG+TGG | - | chr4.4:2522010-2522029 | None:intergenic | 55.0% | |
| CACCAATCGGTGGGGGATAT+TGG | - | chr4.4:2521339-2521358 | None:intergenic | 55.0% | |
| CCAATCGGTGGGGGATATTG+GGG | - | chr4.4:2521337-2521356 | None:intergenic | 55.0% | |
| GCACAGCATTCTGGTCCTCA+GGG | + | chr4.4:2522963-2522982 | MS.gene05843:CDS | 55.0% | |
| GCAGGTCATGAGTCTCACAC+CGG | + | chr4.4:2523156-2523175 | MS.gene05843:CDS | 55.0% | |
| GGTTTGCACTGAAGGTGGTC+TGG | - | chr4.4:2521308-2521327 | None:intergenic | 55.0% | |
| GTTGGATCTACGTTCCCACC+AGG | + | chr4.4:2521522-2521541 | MS.gene05843:CDS | 55.0% | |
| TCCATGTAGCCGACACCACT+TGG | - | chr4.4:2522013-2522032 | None:intergenic | 55.0% | |
| TGGGGAGTCAGATGCCCTTT+AGG | - | chr4.4:2521103-2521122 | None:intergenic | 55.0% | |
| TGGGGGATATTGGGGATGGA+AGG | - | chr4.4:2521329-2521348 | None:intergenic | 55.0% | |
| TGTAGCCGACACCACTTGGT+GGG | - | chr4.4:2522009-2522028 | None:intergenic | 55.0% | |
| TTCTTGGATGCCTGGTCCCT+CGG | + | chr4.4:2522932-2522951 | MS.gene05843:CDS | 55.0% | |
| ! | CGACACCACTTGGTGGGATA+AGG | - | chr4.4:2522003-2522022 | None:intergenic | 55.0% |
| ! | GTGCTGCTAATCAGCCTCCT+CGG | + | chr4.4:2523015-2523034 | MS.gene05843:CDS | 55.0% |
| ! | TCTTGAGTTGCTGCTCCTGG+TGG | + | chr4.4:2521911-2521930 | MS.gene05843:intron | 55.0% |
| !! | ACCAAGTGGTGTCGGCTACA+TGG | + | chr4.4:2522009-2522028 | MS.gene05843:intron | 55.0% |
| !! | GGAGAAGGCATTGCTTCAGC+AGG | + | chr4.4:2523138-2523157 | MS.gene05843:CDS | 55.0% |
| !! | GGTCTTTGTGTCGGCTGTAC+TGG | - | chr4.4:2520890-2520909 | None:intergenic | 55.0% |
| ACTGAAGGTGGTCTGGGCTG+CGG | - | chr4.4:2521301-2521320 | None:intergenic | 60.0% | |
| ATCTACGTTCCCACCAGGGC+AGG | + | chr4.4:2521527-2521546 | MS.gene05843:CDS | 60.0% | |
| CCCCAATATCCCCCACCGAT+TGG | + | chr4.4:2521334-2521353 | MS.gene05843:CDS | 60.0% | |
| GCTAGATTCTCCGAGGGACC+AGG | - | chr4.4:2522945-2522964 | None:intergenic | 60.0% | |
| GGTGGCAATGGTGGTTGCAG+AGG | - | chr4.4:2521280-2521299 | None:intergenic | 60.0% | |
| GTAGTAGTGCCTGCCCTGGT+GGG | - | chr4.4:2521539-2521558 | None:intergenic | 60.0% | |
| TCGGTGGGGGATATTGGGGA+TGG | - | chr4.4:2521333-2521352 | None:intergenic | 60.0% | |
| ! | CTTGGTAGTAGTGCCTGCCC+TGG | - | chr4.4:2521543-2521562 | None:intergenic | 60.0% |
| ! | TGGTTGATGCGCCTGACTCG+AGG | - | chr4.4:2521230-2521249 | None:intergenic | 60.0% |
| ATTACCGCAGGAGGCCGAGG+AGG | - | chr4.4:2523032-2523051 | None:intergenic | 65.0% | |
| GGTAGTAGTGCCTGCCCTGG+TGG | - | chr4.4:2521540-2521559 | None:intergenic | 65.0% | |
| ! | TGCGCCTGACTCGAGGCAGT+TGG | - | chr4.4:2521223-2521242 | None:intergenic | 65.0% |
| CTGGGCTGCGGTGGCAATGG+TGG | - | chr4.4:2521289-2521308 | None:intergenic | 70.0% | |
| GAAGGTGGTCTGGGCTGCGG+TGG | - | chr4.4:2521298-2521317 | None:intergenic | 70.0% | |
| GGTCTGGGCTGCGGTGGCAA+TGG | - | chr4.4:2521292-2521311 | None:intergenic | 70.0% | |
| TCAGCCTCCTCGGCCTCCTG+CGG | + | chr4.4:2523025-2523044 | MS.gene05843:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 2520727 | 2523249 | 2520727 | ID=MS.gene05843 |
| chr4.4 | mRNA | 2520727 | 2523249 | 2520727 | ID=MS.gene05843.t1;Parent=MS.gene05843 |
| chr4.4 | exon | 2520727 | 2520765 | 2520727 | ID=MS.gene05843.t1.exon1;Parent=MS.gene05843.t1 |
| chr4.4 | CDS | 2520727 | 2520765 | 2520727 | ID=cds.MS.gene05843.t1;Parent=MS.gene05843.t1 |
| chr4.4 | exon | 2520845 | 2521420 | 2520845 | ID=MS.gene05843.t1.exon2;Parent=MS.gene05843.t1 |
| chr4.4 | CDS | 2520845 | 2521420 | 2520845 | ID=cds.MS.gene05843.t1;Parent=MS.gene05843.t1 |
| chr4.4 | exon | 2521501 | 2521590 | 2521501 | ID=MS.gene05843.t1.exon3;Parent=MS.gene05843.t1 |
| chr4.4 | CDS | 2521501 | 2521590 | 2521501 | ID=cds.MS.gene05843.t1;Parent=MS.gene05843.t1 |
| chr4.4 | exon | 2522861 | 2523046 | 2522861 | ID=MS.gene05843.t1.exon4;Parent=MS.gene05843.t1 |
| chr4.4 | CDS | 2522861 | 2523046 | 2522861 | ID=cds.MS.gene05843.t1;Parent=MS.gene05843.t1 |
| chr4.4 | exon | 2523124 | 2523249 | 2523124 | ID=MS.gene05843.t1.exon5;Parent=MS.gene05843.t1 |
| chr4.4 | CDS | 2523124 | 2523249 | 2523124 | ID=cds.MS.gene05843.t1;Parent=MS.gene05843.t1 |
| Gene Sequence |
| Protein sequence |
