AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058594


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058594.t1 MTR_8g106120 99.301 1001 7 0 1 1001 1 1001 0.0 2037
MS.gene058594.t1 MTR_2g067250 97.303 1001 25 1 1 1001 1 999 0.0 1998
MS.gene058594.t1 MTR_8g106120 99.358 779 5 0 223 1001 1 779 0.0 1582
MS.gene058594.t1 MTR_8g106120 99.445 721 4 0 1 721 1 721 0.0 1476
MS.gene058594.t1 MTR_3g009940 77.037 270 15 2 1 270 1 223 3.11e-131 400
MS.gene058594.t1 MTR_3g009940 77.698 139 9 2 694 832 224 340 6.31e-62 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058594.t1 AT2G32730 84.341 1009 145 9 1 1001 1 1004 0.0 1674
MS.gene058594.t1 AT1G04810 81.621 1012 163 8 1 1001 1 1000 0.0 1632

Find 268 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTCCTGAGGGAAAATT+TGG 0.159807 4.4:+1397068 MS.gene058594:CDS
TCCAGCCGTTGCACTGAATT+TGG 0.186516 4.4:-1397201 None:intergenic
CATTATTGCATTGGCATAAA+TGG 0.189798 4.4:-1397025 None:intergenic
GAGCAAGATGGGTGCAATTT+TGG 0.199961 4.4:+1398526 MS.gene058594:CDS
CCAGTTAAGTTGGCACCTTC+AGG 0.213525 4.4:+1399273 MS.gene058594:CDS
CATCTCCACAGACTGCTTTA+TGG 0.226890 4.4:-1396977 None:intergenic
TTGTCAGTGTCTTATGTTCT+TGG 0.227488 4.4:+1396436 MS.gene058594:CDS
GGTTGAGCAGAGCTACTAAT+TGG 0.236302 4.4:+1397177 MS.gene058594:CDS
AAACAAAGATGATGCTCTTT+TGG 0.252990 4.4:+1396508 MS.gene058594:CDS
TCCACAATTGCTTCCAGTCT+TGG 0.278640 4.4:-1395780 None:intergenic
GACTATGTCCATACTCTTCT+AGG 0.285306 4.4:+1395493 MS.gene058594:CDS
TAGTGAGGCCATATCTTTAC+TGG 0.288740 4.4:+1398277 MS.gene058594:CDS
TGGAGAGAGCGTGAATCTTC+AGG 0.293532 4.4:-1394415 None:intergenic
GAGGGTACCAATACCAAAAT+TGG 0.295987 4.4:-1398652 None:intergenic
GCTTTATGGTCTTCAAAATA+AGG 0.300890 4.4:-1396963 None:intergenic
GGAATTGCTCTTACGGTTTA+CGG 0.306338 4.4:+1397804 MS.gene058594:CDS
CCTGAAGGTGCCAACTTAAC+TGG 0.312725 4.4:-1399273 None:intergenic
GAATCTGCATCACTGGGTTT+TGG 0.319869 4.4:-1396638 None:intergenic
AGCTCTGATTTCTTCTCTGT+TGG 0.328222 4.4:-1399159 None:intergenic
TACTTGCCTCAGGGTGGGAC+TGG 0.339564 4.4:+1397278 MS.gene058594:CDS
TGAGAGGTTAAACAAAATAA+AGG 0.344216 4.4:+1396766 MS.gene058594:CDS
TTTCTTACTAGCCCTGGCTT+TGG 0.346140 4.4:-1398867 None:intergenic
AGGACTGCAGTCCTAGCATT+AGG 0.347926 4.4:+1397999 MS.gene058594:CDS
ATGCCACCATAACGTAATAT+TGG 0.348326 4.4:-1397879 None:intergenic
CCTGCTGCAAATGACCTCTA+TGG 0.350310 4.4:-1397235 None:intergenic
CCACAATTGCTTCCAGTCTT+GGG 0.351058 4.4:-1395779 None:intergenic
TGAGCAGGAACCACTCTTGC+TGG 0.358571 4.4:-1399210 None:intergenic
TGAGGCTGCTGGTATCAGTA+TGG 0.362240 4.4:+1397606 MS.gene058594:CDS
GTGGGAACAGTCGTAGGCTT+GGG 0.369188 4.4:-1398791 None:intergenic
AGTCTTAGAAAGTAGTCTTA+TGG 0.371639 4.4:-1398585 None:intergenic
CTCAGCTTTCTTACTAGCCC+TGG 0.372570 4.4:-1398873 None:intergenic
GAAAACAGTCTCACTTGTTA+TGG 0.376296 4.4:-1396841 None:intergenic
AGAGCACCACCTTCTGAGTA+TGG 0.376878 4.4:-1397311 None:intergenic
TCCGCCAGCATCAAGGATTC+CGG 0.379806 4.4:-1398552 None:intergenic
CGTGTATTCCAGGCGACAAT+TGG 0.383184 4.4:+1398469 MS.gene058594:intron
TTTACTGGAGCCTTTGACTT+CGG 0.384735 4.4:+1398292 MS.gene058594:CDS
ATATGCTAGTTTCAAGTCTA+AGG 0.392598 4.4:+1395731 MS.gene058594:CDS
TGACAAATGCTCAGATAATC+TGG 0.399990 4.4:-1396419 None:intergenic
ATTCGCGTGTTGGAACCTTC+AGG 0.407002 4.4:+1398390 MS.gene058594:CDS
CAAAGGCTCCAGTAAAGATA+TGG 0.414828 4.4:-1398285 None:intergenic
AATTCTCACCTAGAAGAGTA+TGG 0.416307 4.4:-1395501 None:intergenic
TAGCGGAACAGCAAACAATA+AGG 0.416651 4.4:+1397923 MS.gene058594:CDS
GGACTGCAGTCCTAGCATTA+GGG 0.419036 4.4:+1398000 MS.gene058594:CDS
GCCTCCGGAATCCTTGATGC+TGG 0.420374 4.4:+1398548 MS.gene058594:CDS
CTGAGTAGAATCTGCATCAC+TGG 0.422471 4.4:-1396645 None:intergenic
CCTCAGGGTGGGACTGGTGG+TGG 0.423831 4.4:+1397284 MS.gene058594:CDS
AGCAAGAGTGGTTCCTGCTC+AGG 0.424076 4.4:+1399212 MS.gene058594:CDS
TTCAGTGCAACGGCTGGACT+TGG 0.424201 4.4:+1397206 MS.gene058594:CDS
CAGTTAAGTTGGCACCTTCA+GGG 0.424877 4.4:+1399274 MS.gene058594:CDS
TCAGTAATAGCAAGAACTTC+AGG 0.425883 4.4:-1399330 None:intergenic
CTATCCTATGCCCTTGGAGC+TGG 0.426899 4.4:+1395442 MS.gene058594:CDS
GGTATTTCCTGTGCGGGTAC+AGG 0.428085 4.4:+1398251 MS.gene058594:CDS
AATCCTGTGAAACATCAAAC+AGG 0.428256 4.4:-1395468 None:intergenic
GCTCTGATTTCTTCTCTGTT+GGG 0.428613 4.4:-1399158 None:intergenic
TCTTATCTATTTCATAAGCT+TGG 0.430502 4.4:+1398673 MS.gene058594:CDS
GGCCTACTCATGGTTGGAAC+AGG 0.433364 4.4:+1397628 MS.gene058594:CDS
TCCCCTGTTTGATGTTTCAC+AGG 0.436490 4.4:+1395465 MS.gene058594:CDS
TGCCATTGAATGCAGGAGAT+TGG 0.436671 4.4:+1395949 MS.gene058594:CDS
GACTCTAAAGGTTGAGACTT+TGG 0.437729 4.4:-1396608 None:intergenic
CAGATATGTTCCAGTTAAGT+TGG 0.438153 4.4:+1399263 MS.gene058594:CDS
ACAATCTGGTCGATAGCTTC+TGG 0.438425 4.4:+1394444 MS.gene058594:CDS
GGTGGGAACAGTCGTAGGCT+TGG 0.440669 4.4:-1398792 None:intergenic
ATCCAATCTCCTGCATTCAA+TGG 0.441331 4.4:-1395951 None:intergenic
GATTAAAGCCGTTGGTGAAA+AGG 0.442049 4.4:-1398696 None:intergenic
ACATCAACTGCTGGTGGGTC+AGG 0.443436 4.4:+1399369 MS.gene058594:CDS
ATCAGCAATGGCTGTGGATG+AGG 0.444703 4.4:+1399413 MS.gene058594:CDS
GATGGCGCCCTACTTGCCTC+AGG 0.446713 4.4:+1397268 MS.gene058594:CDS
TCCGCCATTGGAACATCATC+TGG 0.447992 4.4:-1396686 None:intergenic
TGGAAAATACCAACAAGCTA+TGG 0.449129 4.4:+1395922 MS.gene058594:CDS
TACACTGATAGTGCTGTTGC+CGG 0.449237 4.4:+1397583 MS.gene058594:CDS
ACTTAAGATGTGTACTCAAA+TGG 0.449817 4.4:-1399453 None:intergenic
GGAACACTTGTGGAGATCTC+TGG 0.452349 4.4:-1394467 None:intergenic
TTTGTTAGAATCTCAAAAGT+AGG 0.455024 4.4:-1399186 None:intergenic
TGAGACAAGAACTCAAACTT+TGG 0.455764 4.4:-1398743 None:intergenic
GCAGATTCTACTCAGAATAC+TGG 0.456154 4.4:+1396653 MS.gene058594:CDS
CATGGTGCATGTCTAGGTCT+TGG 0.456191 4.4:+1397502 MS.gene058594:CDS
TTGCCTCAGGGTGGGACTGG+TGG 0.456946 4.4:+1397281 MS.gene058594:CDS
CTCACTTGTTATGGCTGTAA+AGG 0.458815 4.4:-1396832 None:intergenic
GCCAAATTCAGTGCAACGGC+TGG 0.460539 4.4:+1397200 MS.gene058594:CDS
GATGAAGAACTCTGCAATCC+TGG 0.462319 4.4:-1399393 None:intergenic
AGCTCTGGGAATTGCTCTTA+CGG 0.463949 4.4:+1397797 MS.gene058594:CDS
GAGAGGTTAAACAAAATAAA+GGG 0.463995 4.4:+1396767 MS.gene058594:CDS
TCTCTCCAACCTCAACAATC+TGG 0.466462 4.4:+1394430 MS.gene058594:CDS
GCTGGTTCCCCGTCCGCCAT+TGG 0.467049 4.4:-1396698 None:intergenic
CCATAGAGGTCATTTGCAGC+AGG 0.467827 4.4:+1397235 MS.gene058594:CDS
AGGACAGAACTAACCTGCTC+TGG 0.470545 4.4:-1398041 None:intergenic
TTAATGAACTTCTCCTGAGC+AGG 0.471986 4.4:-1399225 None:intergenic
CCCAAGACTGGAAGCAATTG+TGG 0.472490 4.4:+1395779 MS.gene058594:CDS
TCCAGCATGCATTATTGCAT+TGG 0.472646 4.4:-1397034 None:intergenic
GCTGTTGCCGGTGAGGCTGC+TGG 0.476468 4.4:+1397595 MS.gene058594:CDS
AAGCTTATGAAATAGATAAG+AGG 0.477531 4.4:-1398671 None:intergenic
GGCTTCTCCATCCTTCTCAC+TGG 0.480813 4.4:-1398972 None:intergenic
CATTTCTTCCGCCAGCATCA+AGG 0.480834 4.4:-1398559 None:intergenic
TGACCATAGCCATTGCTATG+AGG 0.488921 4.4:-1398343 None:intergenic
GGAGAGAGCGTGAATCTTCA+GGG 0.489567 4.4:-1394414 None:intergenic
TGGCAGTTCCCATAGCTTGT+TGG 0.489815 4.4:-1395931 None:intergenic
GACTCACTATCCTATGCCCT+TGG 0.491337 4.4:+1395436 MS.gene058594:CDS
TGAGCAGATGACTCGAGATC+AGG 0.492635 4.4:+1397854 MS.gene058594:CDS
TGGCATGTATGCACTGGCTT+TGG 0.492933 4.4:+1397896 MS.gene058594:CDS
TCTACATCAGCTCCAAGTGC+TGG 0.494421 4.4:+1398935 MS.gene058594:CDS
CAGGATCCAATATTACGTTA+TGG 0.496766 4.4:+1397873 MS.gene058594:CDS
ATGTTTCAGAGGGTTAGCTC+TGG 0.498173 4.4:+1397782 MS.gene058594:intron
TTTGATGCCTTCTCCATGGT+TGG 0.501980 4.4:-1397357 None:intergenic
GCAGTTGATGTCGTAGATGC+AGG 0.502464 4.4:-1399357 None:intergenic
GTCCCACCCTGAGGCAAGTA+GGG 0.504577 4.4:-1397275 None:intergenic
CATCAGCTAAGGCCAAAGCC+AGG 0.505060 4.4:+1398855 MS.gene058594:CDS
ATGATGTTCCAATGGCGGAC+GGG 0.505483 4.4:+1396690 MS.gene058594:CDS
ACGACGTTGGTCAGCTCAGC+CGG 0.507655 4.4:+1394356 MS.gene058594:CDS
CAGCTCAGCCGGTGGCATGT+TGG 0.508274 4.4:+1394367 MS.gene058594:CDS
TCAGCTCCAAGTGCTGGAAA+AGG 0.509472 4.4:+1398941 MS.gene058594:CDS
TAAGAAAGCTGAGGAACAGA+AGG 0.510396 4.4:+1398883 MS.gene058594:CDS
TTTGGCTCTACGGACTCTAA+AGG 0.511037 4.4:-1396620 None:intergenic
GTTGAGCAGAGCTACTAATT+GGG 0.514161 4.4:+1397178 MS.gene058594:CDS
GTTGAGACTTTGGCAATGAA+AGG 0.514680 4.4:-1396598 None:intergenic
GACCATAGCCATTGCTATGA+GGG 0.517067 4.4:-1398342 None:intergenic
ATCGACCAGATTGTTGAGGT+TGG 0.517100 4.4:-1394435 None:intergenic
TACAATCCACATGTTCGTTA+CGG 0.520609 4.4:+1398212 MS.gene058594:CDS
CTGATGTGAGTGATGATGTC+AGG 0.520902 4.4:+1397976 MS.gene058594:CDS
TGATGTTCCAATGGCGGACG+GGG 0.521532 4.4:+1396691 MS.gene058594:CDS
GTGGATTGTATGATTCTGAT+AGG 0.523060 4.4:-1398199 None:intergenic
TTCTTCATCAGCAATGGCTG+TGG 0.523176 4.4:+1399407 MS.gene058594:CDS
GGTGGTGCTCTTTATGCCCT+CGG 0.523440 4.4:+1397323 MS.gene058594:CDS
CGCCCTACTTGCCTCAGGGT+GGG 0.525021 4.4:+1397273 MS.gene058594:CDS
GGTTGGAACAGGCAGTGATA+AGG 0.525506 4.4:+1397639 MS.gene058594:CDS
CAGCATGGCCAACATGCCAC+CGG 0.526548 4.4:-1394375 None:intergenic
GAGGATACCATGAGCAAGAT+GGG 0.527104 4.4:+1398515 MS.gene058594:CDS
TTCAGTCATGGCTACGACGT+TGG 0.527304 4.4:+1394343 None:intergenic
GAAGCTAGTGATTCGCGTGT+TGG 0.527917 4.4:+1398380 MS.gene058594:CDS
AGTCCCACCCTGAGGCAAGT+AGG 0.529432 4.4:-1397276 None:intergenic
CAATTCAGGTGTATTGTGGA+TGG 0.530057 4.4:+1395902 MS.gene058594:intron
ATTCAACATGGTGCATGTCT+AGG 0.530327 4.4:+1397496 MS.gene058594:CDS
TCTTCAATTCAGGTGTATTG+TGG 0.532154 4.4:+1395898 MS.gene058594:intron
ACTGCTGGTGGGTCAGGACC+AGG 0.532813 4.4:+1399375 MS.gene058594:CDS
TGACATTTAGAAGAAAAGCT+TGG 0.532851 4.4:-1396568 None:intergenic
TGCCGCATTACTTGTATCAA+AGG 0.534132 4.4:+1395086 MS.gene058594:CDS
TCGTGCTGCGCAAGCTATCA+CGG 0.534450 4.4:-1397388 None:intergenic
CATAGCAATGGCTATGGTCA+TGG 0.535078 4.4:+1398346 MS.gene058594:CDS
TCAAATGGTTGAGGAGGTTG+AGG 0.536397 4.4:-1399438 None:intergenic
AGGAGTTTGATCAGCATCAA+AGG 0.536478 4.4:+1395058 MS.gene058594:CDS
GATGTTGACAAAACAGCAGT+TGG 0.538017 4.4:-1398836 None:intergenic
CGTGAATCTTCAGGGAGATG+TGG 0.540725 4.4:-1394406 None:intergenic
GGAAAATACCAACAAGCTAT+GGG 0.540976 4.4:+1395923 MS.gene058594:CDS
TATCAGTATGGGCCTACTCA+TGG 0.541724 4.4:+1397618 MS.gene058594:CDS
TGTTTCAGAGGGTTAGCTCT+GGG 0.542560 4.4:+1397783 MS.gene058594:intron
GGCACATTGACAGCAGAAGC+TGG 0.542844 4.4:-1396716 None:intergenic
CTTGCGCAGCACGACTGTTG+AGG 0.543633 4.4:+1397397 MS.gene058594:CDS
GAGGCTGCTGGTATCAGTAT+GGG 0.546660 4.4:+1397607 MS.gene058594:CDS
TGAGGATACCATGAGCAAGA+TGG 0.547720 4.4:+1398514 MS.gene058594:CDS
TGGGAACTGCCATTGAATGC+AGG 0.550560 4.4:+1395942 MS.gene058594:CDS
CTTGGAGCTGATGTAGAGTC+GGG 0.550594 4.4:-1398929 None:intergenic
GCTGTGGGTATTTCCTGTGC+GGG 0.551364 4.4:+1398245 MS.gene058594:CDS
TTACGGAGCAGCTCTTGCTG+TGG 0.551926 4.4:+1398229 MS.gene058594:CDS
ACTAAGACCTGTACCCGCAC+AGG 0.553691 4.4:-1398258 None:intergenic
GCCAATGCAATAATGCATGC+TGG 0.554004 4.4:+1397033 MS.gene058594:CDS
GAAATACTTTAACAAGGAGA+CGG 0.555096 4.4:-1396382 None:intergenic
ATGTTCTTGGATGAGCCAGA+GGG 0.555263 4.4:+1396449 MS.gene058594:CDS
TATCAAAGTAGACCCAAGAC+TGG 0.555724 4.4:+1395767 MS.gene058594:CDS
TACGGAGCAGCTCTTGCTGT+GGG 0.559179 4.4:+1398230 MS.gene058594:CDS
GGGACCAGCTCCAAGGGCAT+AGG 0.559805 4.4:-1395446 None:intergenic
ATTCATGCCAACCATGGAGA+AGG 0.560957 4.4:+1397350 MS.gene058594:CDS
AGGAAAGTCTTCCAGTGAGA+AGG 0.561790 4.4:+1398961 MS.gene058594:CDS
AAGTCTTCCAGTGAGAAGGA+TGG 0.561796 4.4:+1398965 MS.gene058594:CDS
TTCCCTCAGGAAAGTATCCA+CGG 0.561912 4.4:-1397061 None:intergenic
GCAGAGTTCTTCATCAGCAA+TGG 0.561955 4.4:+1399401 MS.gene058594:CDS
ATCTCTAGGAACTGCTGATG+AGG 0.563533 4.4:+1397531 MS.gene058594:CDS
TGCCCTCATAGCAATGGCTA+TGG 0.563797 4.4:+1398340 MS.gene058594:CDS
GAGGTCATTTGCAGCAGGGA+AGG 0.563886 4.4:+1397240 MS.gene058594:CDS
TGAGAGTTTGTACGAAGATG+AGG 0.564498 4.4:+1395038 MS.gene058594:CDS
ATTGTTTGATGCCTTCTCCA+TGG 0.565857 4.4:-1397361 None:intergenic
GAAGGATGGAGAAGCCATGC+AGG 0.566051 4.4:+1398979 MS.gene058594:CDS
TTCTGCTGTCAATGTGCCTG+AGG 0.568847 4.4:+1396721 MS.gene058594:CDS
ACTTGGAGCTGATGTAGAGT+CGG 0.572042 4.4:-1398930 None:intergenic
ATACATAAGGGGAACACTTG+TGG 0.572276 4.4:-1394477 None:intergenic
AAACAGGGGACCAGCTCCAA+GGG 0.572325 4.4:-1395452 None:intergenic
ATTGTATGATTCTGATAGGA+GGG 0.573007 4.4:-1398195 None:intergenic
TTTCACTGTTGAAGTAGTGG+TGG 0.574051 4.4:-1398810 None:intergenic
ACTGATACCAGCAGCCTCAC+CGG 0.575307 4.4:-1397602 None:intergenic
GGTCTTGGATTGGCATCTCT+AGG 0.577061 4.4:+1397517 MS.gene058594:CDS
TTCAGACCGATTAAAGCCGT+TGG 0.577561 4.4:-1398704 None:intergenic
GGACTTGGTGTTATCCATAG+AGG 0.578245 4.4:+1397221 MS.gene058594:CDS
GCGCCCTACTTGCCTCAGGG+TGG 0.578270 4.4:+1397272 MS.gene058594:CDS
GCATCTACGACATCAACTGC+TGG 0.579343 4.4:+1399360 MS.gene058594:CDS
TCCGGAATCCTTGATGCTGG+CGG 0.580078 4.4:+1398551 MS.gene058594:CDS
ATGGCGCCCTACTTGCCTCA+GGG 0.581130 4.4:+1397269 MS.gene058594:CDS
TGCTGTGGGTATTTCCTGTG+CGG 0.582512 4.4:+1398244 MS.gene058594:CDS
TCTAACAAATCCAGCAAGAG+TGG 0.582580 4.4:+1399200 MS.gene058594:CDS
TATGTTCTTGGATGAGCCAG+AGG 0.582808 4.4:+1396448 MS.gene058594:CDS
GCTGTACTCTGATCCAGAGC+AGG 0.584183 4.4:+1398028 MS.gene058594:CDS
AATTGCACCCATCTTGCTCA+TGG 0.584856 4.4:-1398522 None:intergenic
TTCACTGTTGAAGTAGTGGT+GGG 0.585150 4.4:-1398809 None:intergenic
TGGGAACAGTCGTAGGCTTG+GGG 0.585173 4.4:-1398790 None:intergenic
GCAAGAACTTCAGGCTCGGT+AGG 0.586206 4.4:-1399321 None:intergenic
GATAAAGTTACTGCAGTGGT+TGG 0.586930 4.4:+1398614 MS.gene058594:CDS
GTGAATCTTCAGGGAGATGT+GGG 0.588767 4.4:-1394405 None:intergenic
AGTATGGGCCTACTCATGGT+TGG 0.589770 4.4:+1397622 MS.gene058594:CDS
TGAGTAGAATCTGCATCACT+GGG 0.589801 4.4:-1396644 None:intergenic
AAGTTTCACTGTTGAAGTAG+TGG 0.590303 4.4:-1398813 None:intergenic
GTTCTTGGATGAGCCAGAGG+GGG 0.592212 4.4:+1396451 MS.gene058594:CDS
ATGCTCAGATAATCTGGTGA+AGG 0.593508 4.4:-1396413 None:intergenic
AGCTTATGAAATAGATAAGA+GGG 0.594563 4.4:-1398670 None:intergenic
CAGGAGATTGGATAAACTTG+AGG 0.594774 4.4:+1395961 MS.gene058594:CDS
TCAACAACATCCGAAGTCAA+AGG 0.594848 4.4:-1398302 None:intergenic
TGGTATCCTCATGCTTGTCA+AGG 0.595965 4.4:-1398502 None:intergenic
TCTACGACATCAACTGCTGG+TGG 0.596516 4.4:+1399363 MS.gene058594:CDS
CATAGAGGTCATTTGCAGCA+GGG 0.597007 4.4:+1397236 MS.gene058594:CDS
ATCAGCTAAGGCCAAAGCCA+GGG 0.602026 4.4:+1398856 MS.gene058594:CDS
ACAGCACAAACCCTAATGCT+AGG 0.602863 4.4:-1398010 None:intergenic
GGTCTTCAAAATAAGGAGGT+CGG 0.604928 4.4:-1396956 None:intergenic
TGCATGTCTAGGTCTTGGAT+TGG 0.605817 4.4:+1397507 MS.gene058594:CDS
GATGATGTTCCAATGGCGGA+CGG 0.606142 4.4:+1396689 MS.gene058594:CDS
AAAGTGAAGTAATTGACGAA+TGG 0.609715 4.4:-1397946 None:intergenic
CAGGGCTAGTAAGAAAGCTG+AGG 0.614232 4.4:+1398874 MS.gene058594:CDS
CAAACAGGGGACCAGCTCCA+AGG 0.614560 4.4:-1395453 None:intergenic
AGCTATCGACCAGATTGTTG+AGG 0.617954 4.4:-1394439 None:intergenic
TTAAGAAGCACAAACCCTGA+AGG 0.618792 4.4:-1399288 None:intergenic
TGATAGTGCTGTTGCCGGTG+AGG 0.619271 4.4:+1397588 MS.gene058594:CDS
GAAGACCATAAAGCAGTCTG+TGG 0.620130 4.4:+1396972 MS.gene058594:CDS
GCAGCAGGGAAGGTCACTGA+TGG 0.621007 4.4:+1397250 MS.gene058594:CDS
TCAGGGTGCCCTCATAGCAA+TGG 0.622547 4.4:+1398334 MS.gene058594:CDS
TTGGGCCAAATTCAGTGCAA+CGG 0.622608 4.4:+1397196 MS.gene058594:CDS
GGTGGTAGTCCATACTCAGA+AGG 0.623238 4.4:+1397302 MS.gene058594:CDS
GATGTGTACTCAAATGGTTG+AGG 0.626239 4.4:-1399447 None:intergenic
GATCCAATATTACGTTATGG+TGG 0.627085 4.4:+1397876 MS.gene058594:CDS
GGTCTGATTCATGCCAACCA+TGG 0.628696 4.4:+1397344 MS.gene058594:CDS
GATAGGAGGGAAACAATTCG+AGG 0.629557 4.4:-1398182 None:intergenic
TATGGCCAGGTCATTCAACA+TGG 0.632302 4.4:+1397484 MS.gene058594:intron
CTACGACATCAACTGCTGGT+GGG 0.633190 4.4:+1399364 MS.gene058594:CDS
GATGTGGGACTCGTGCAGCA+TGG 0.634411 4.4:-1394390 None:intergenic
GGTTTACGGAAGAGAAGAAG+AGG 0.635138 4.4:+1397818 MS.gene058594:CDS
AACCGTGGATACTTTCCTGA+GGG 0.636227 4.4:+1397059 MS.gene058594:CDS
AGAGTGATTACATACATAAG+GGG 0.636567 4.4:-1394488 None:intergenic
ACAAGAAGTGACAATGTGCA+AGG 0.637151 4.4:+1395992 MS.gene058594:CDS
TTATGGTCTTCAAAATAAGG+AGG 0.637784 4.4:-1396960 None:intergenic
GTAGTGGTGGGAACAGTCGT+AGG 0.638941 4.4:-1398797 None:intergenic
GCATGATAAAGTTACTGCAG+TGG 0.640321 4.4:+1398610 MS.gene058594:CDS
AATAGCAAGAACTTCAGGCT+CGG 0.640998 4.4:-1399325 None:intergenic
ACTCAGAATACTGGTGTGAG+TGG 0.641390 4.4:+1396662 MS.gene058594:CDS
GTTGGCATGAATCAGACCGA+GGG 0.641472 4.4:-1397339 None:intergenic
TGGACCAGATGATGTTCCAA+TGG 0.647251 4.4:+1396682 MS.gene058594:CDS
TTATGGTGGCATGTATGCAC+TGG 0.648795 4.4:+1397890 MS.gene058594:CDS
GCCAGCATCAAGGATTCCGG+AGG 0.649554 4.4:-1398549 None:intergenic
GAATCTTAGAGAATACAGAC+AGG 0.652688 4.4:+1396054 MS.gene058594:CDS
GCTGCTCCGTAACGAACATG+TGG 0.655887 4.4:-1398218 None:intergenic
CAATGTATGCATTACCTGCA+TGG 0.656072 4.4:-1398993 None:intergenic
ATCCTGTGAAACATCAAACA+GGG 0.656841 4.4:-1395467 None:intergenic
ACCAGATGATGTTCCAATGG+CGG 0.657198 4.4:+1396685 MS.gene058594:CDS
GGTAGTCCATACTCAGAAGG+TGG 0.657262 4.4:+1397305 MS.gene058594:CDS
TGTTCTTGGATGAGCCAGAG+GGG 0.657310 4.4:+1396450 MS.gene058594:CDS
AATTATCCTTGACAAGCATG+AGG 0.660003 4.4:+1398496 MS.gene058594:CDS
GATTGTATGATTCTGATAGG+AGG 0.661847 4.4:-1398196 None:intergenic
TGCCTGTTCCAACCATGAGT+AGG 0.663707 4.4:-1397630 None:intergenic
TGCGGGTACAGGTCTTAGTG+AGG 0.666367 4.4:+1398262 MS.gene058594:CDS
GCACTGGCTTTGGCGTATAG+CGG 0.666930 4.4:+1397906 MS.gene058594:CDS
AATGCATGCTGGAACAACCG+TGG 0.668717 4.4:+1397044 MS.gene058594:CDS
TGCTAGTTTCAAGTCTAAGG+CGG 0.669969 4.4:+1395734 MS.gene058594:CDS
GTGTACTCAAATGGTTGAGG+AGG 0.670691 4.4:-1399444 None:intergenic
TACCTTTGATACAAGTAATG+CGG 0.671026 4.4:-1395088 None:intergenic
ACGTTGGTCAGCTCAGCCGG+TGG 0.681112 4.4:+1394359 MS.gene058594:CDS
GGTTGGCATGAATCAGACCG+AGG 0.688601 4.4:-1397340 None:intergenic
TCTTAGAGAATACAGACAGG+AGG 0.696091 4.4:+1396057 MS.gene058594:CDS
TTACGGAAGAGAAGAAGAGG+CGG 0.701441 4.4:+1397821 MS.gene058594:CDS
CAACCGTGGATACTTTCCTG+AGG 0.701995 4.4:+1397058 MS.gene058594:CDS
CCACCACCAGTCCCACCCTG+AGG 0.702255 4.4:-1397284 None:intergenic
TCCTGTGAAACATCAAACAG+GGG 0.711450 4.4:-1395466 None:intergenic
TGCTGCGCAAGCTATCACGG+AGG 0.731636 4.4:-1397385 None:intergenic
ATGTGAGTGATGATGTCAGG+AGG 0.740753 4.4:+1397979 MS.gene058594:CDS
GTATTCTCTAAGATTCACAA+AGG 0.747713 4.4:-1396047 None:intergenic
TGGCATAAATGGTAGCACTG+TGG 0.777224 4.4:-1397014 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTCAAAAAAAAAAAAAAAA+AGG - chr4.4:1398099-1398118 None:intergenic 10.0%
!! TAAAATCATAAAAATTTCAA+TGG - chr4.4:1396190-1396209 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTTGAG+TGG + chr4.4:1398098-1398117 MS.gene058594:intron 10.0%
!! AAAAAAAAAAAAAGGTAACT+CGG - chr4.4:1398091-1398110 None:intergenic 15.0%
!! CATCTAAGAATAATAATATA+TGG - chr4.4:1395329-1395348 None:intergenic 15.0%
!! TTAGATAATCATTTATTTGT+TGG + chr4.4:1396880-1396899 MS.gene058594:intron 15.0%
!!! TAATATTTTATAAATTGTCG+TGG - chr4.4:1395686-1395705 None:intergenic 15.0%
!!! TTATATAGAATTTTTAACAG+CGG + chr4.4:1396309-1396328 MS.gene058594:intron 15.0%
!! AAAAAAAAAAAAGGTAACTC+GGG - chr4.4:1398090-1398109 None:intergenic 20.0%
!! ACGAAAAAATTATAAGGTAA+AGG + chr4.4:1397698-1397717 MS.gene058594:intron 20.0%
!! AGAGGAAATATAAAAAGAAA+AGG - chr4.4:1398064-1398083 None:intergenic 20.0%
!! ATATTATTATTCTTAGATGC+TGG + chr4.4:1395330-1395349 MS.gene058594:intron 20.0%
!! TAAAATTAAAGGGATGAAAA+GGG - chr4.4:1396151-1396170 None:intergenic 20.0%
!!! AAATATTATGTTTTCAGCTA+AGG + chr4.4:1395698-1395717 MS.gene058594:intron 20.0%
!!! AGATAACAAATAAGTATTGT+CGG + chr4.4:1395237-1395256 MS.gene058594:intron 20.0%
!!! CCTTTAAAACAATAAAGTTT+CGG - chr4.4:1399131-1399150 None:intergenic 20.0%
!!! GATATTGCTTGTTTTTTTTT+TGG + chr4.4:1396349-1396368 MS.gene058594:intron 20.0%
!!! GTTTTTTAGTGTTAATTTGT+TGG + chr4.4:1394959-1394978 MS.gene058594:intron 20.0%
!!! TATATCTAATGTGTTGTTTA+TGG + chr4.4:1397466-1397485 MS.gene058594:intron 20.0%
! AAAGAGTGATTACATACATA+AGG - chr4.4:1394493-1394512 None:intergenic 25.0%
! AAGAGTGATTACATACATAA+GGG - chr4.4:1394492-1394511 None:intergenic 25.0%
! AAGCTTATGAAATAGATAAG+AGG - chr4.4:1398674-1398693 None:intergenic 25.0%
! AGCTCAATGACTAAAATTAA+AGG - chr4.4:1396162-1396181 None:intergenic 25.0%
! AGCTTATGAAATAGATAAGA+GGG - chr4.4:1398673-1398692 None:intergenic 25.0%
! ATCAACAAGTCTTAATGATT+TGG - chr4.4:1394909-1394928 None:intergenic 25.0%
! CACAACACGAAAAAATTATA+AGG + chr4.4:1397692-1397711 MS.gene058594:CDS 25.0%
! CTAAAATTAAAGGGATGAAA+AGG - chr4.4:1396152-1396171 None:intergenic 25.0%
! GAGAGGTTAAACAAAATAAA+GGG + chr4.4:1396767-1396786 MS.gene058594:CDS 25.0%
! GCTCAATGACTAAAATTAAA+GGG - chr4.4:1396161-1396180 None:intergenic 25.0%
! TATCATGTTTCTTTCTTACT+TGG + chr4.4:1394928-1394947 MS.gene058594:intron 25.0%
! TCTTATCTATTTCATAAGCT+TGG + chr4.4:1398673-1398692 MS.gene058594:CDS 25.0%
! TGAGAGGTTAAACAAAATAA+AGG + chr4.4:1396766-1396785 MS.gene058594:CDS 25.0%
! TTTGAAAGCTTCTGAATTAA+GGG + chr4.4:1394875-1394894 MS.gene058594:intron 25.0%
! TTTGTTAGAATCTCAAAAGT+AGG - chr4.4:1399189-1399208 None:intergenic 25.0%
!! AAAATAAAGGGAATTTTGTC+TGG + chr4.4:1396779-1396798 MS.gene058594:CDS 25.0%
!! ATCATTTATTTGTTGGTACT+TGG + chr4.4:1396887-1396906 MS.gene058594:intron 25.0%
!! ATCTTAGGTCTTTTATTACT+TGG + chr4.4:1395402-1395421 MS.gene058594:intron 25.0%
!! CATCTTTTAAACATCTCTTT+TGG + chr4.4:1396212-1396231 MS.gene058594:intron 25.0%
!! GAAGTTCATTAAATTTTTGC+AGG + chr4.4:1399236-1399255 MS.gene058594:CDS 25.0%
!! GGTAAGGAAAGTATATTATT+TGG + chr4.4:1398411-1398430 MS.gene058594:intron 25.0%
!! TACTATGATCTCTTTGAAAA+TGG + chr4.4:1395577-1395596 MS.gene058594:intron 25.0%
!! TCTTAGGTCTTTTATTACTT+GGG + chr4.4:1395403-1395422 MS.gene058594:intron 25.0%
!! TTTTCTTCACTCTTTATCTT+AGG + chr4.4:1395387-1395406 MS.gene058594:intron 25.0%
!! TTTTGTTCCTTGAAAATTGT+AGG + chr4.4:1397151-1397170 MS.gene058594:intron 25.0%
!!! ACTTCAAATAGCTTTTGATT+TGG + chr4.4:1396532-1396551 MS.gene058594:CDS 25.0%
!!! ATTGTTTCTAAATGTTTCAG+AGG + chr4.4:1397771-1397790 MS.gene058594:intron 25.0%
!!! CCGAAACTTTATTGTTTTAA+AGG + chr4.4:1399128-1399147 MS.gene058594:intron 25.0%
!!! GCTTTTGAAATACTTTAACA+AGG - chr4.4:1396391-1396410 None:intergenic 25.0%
!!! GTTAGTGGTTTTATTCATTT+TGG + chr4.4:1395636-1395655 MS.gene058594:intron 25.0%
!!! TTCTTTGATTTCATGCTTTT+CGG + chr4.4:1394521-1394540 MS.gene058594:intron 25.0%
!!! TTGTTTCTAAATGTTTCAGA+GGG + chr4.4:1397772-1397791 MS.gene058594:intron 25.0%
!!! TTTTGAAAGCTTCTGAATTA+AGG + chr4.4:1394874-1394893 MS.gene058594:intron 25.0%
AAAACCTATGTTGTCAATAG+TGG - chr4.4:1394858-1394877 None:intergenic 30.0%
AAAGTGAAGTAATTGACGAA+TGG - chr4.4:1397949-1397968 None:intergenic 30.0%
AATATACTTTCCTTACCTGA+AGG - chr4.4:1398408-1398427 None:intergenic 30.0%
AGAGTGATTACATACATAAG+GGG - chr4.4:1394491-1394510 None:intergenic 30.0%
AGATTTGAGAGTCCTATTAA+CGG - chr4.4:1396244-1396263 None:intergenic 30.0%
ATGAAAAAACTTAAGTCCTC+TGG - chr4.4:1395304-1395323 None:intergenic 30.0%
ATTGTATGATTCTGATAGGA+GGG - chr4.4:1398198-1398217 None:intergenic 30.0%
CAACGAAAATTGAGAATTGA+GGG - chr4.4:1395874-1395893 None:intergenic 30.0%
CAGATACTAAAATACAAACC+AGG - chr4.4:1395365-1395384 None:intergenic 30.0%
GAAATACTTTAACAAGGAGA+CGG - chr4.4:1396385-1396404 None:intergenic 30.0%
GCTTTATGGTCTTCAAAATA+AGG - chr4.4:1396966-1396985 None:intergenic 30.0%
TACCTTTGATACAAGTAATG+CGG - chr4.4:1395091-1395110 None:intergenic 30.0%
TCAAATTCTACTACACACAA+TGG - chr4.4:1394724-1394743 None:intergenic 30.0%
TGACATTTAGAAGAAAAGCT+TGG - chr4.4:1396571-1396590 None:intergenic 30.0%
TTATGGTCTTCAAAATAAGG+AGG - chr4.4:1396963-1396982 None:intergenic 30.0%
TTCCTTGAAAATTGTAGGAT+TGG + chr4.4:1397156-1397175 MS.gene058594:intron 30.0%
TTGAAAGCTTCTGAATTAAG+GGG + chr4.4:1394876-1394895 MS.gene058594:intron 30.0%
! AAACAAAGATGATGCTCTTT+TGG + chr4.4:1396508-1396527 MS.gene058594:CDS 30.0%
! AACCAATCCTACAATTTTCA+AGG - chr4.4:1397161-1397180 None:intergenic 30.0%
! AGCAATAGTCTTTTCTTTGA+CGG - chr4.4:1397447-1397466 None:intergenic 30.0%
! AGTCTTAGAAAGTAGTCTTA+TGG - chr4.4:1398588-1398607 None:intergenic 30.0%
! ATATGCTAGTTTCAAGTCTA+AGG + chr4.4:1395731-1395750 MS.gene058594:CDS 30.0%
! ATTGATAAGATTGGTTCAGT+TGG + chr4.4:1395605-1395624 MS.gene058594:intron 30.0%
! CATTATTGCATTGGCATAAA+TGG - chr4.4:1397028-1397047 None:intergenic 30.0%
! GTTGGAATGAGAATGTTTTT+GGG + chr4.4:1394977-1394996 MS.gene058594:intron 30.0%
! TATAGAATTTTTAACAGCGG+TGG + chr4.4:1396312-1396331 MS.gene058594:intron 30.0%
! TGTTGGAATGAGAATGTTTT+TGG + chr4.4:1394976-1394995 MS.gene058594:intron 30.0%
!! ATGTTGGTTCTTATACTGTT+TGG + chr4.4:1396914-1396933 MS.gene058594:intron 30.0%
!! GAGTTTATTTTCAATCGTGT+AGG + chr4.4:1394644-1394663 MS.gene058594:intron 30.0%
!! GTATTCTCTAAGATTCACAA+AGG - chr4.4:1396050-1396069 None:intergenic 30.0%
!! TAGTACAAAGTGTTGTCAAT+CGG + chr4.4:1394775-1394794 MS.gene058594:intron 30.0%
!! TTGGAATGAGAATGTTTTTG+GGG + chr4.4:1394978-1394997 MS.gene058594:intron 30.0%
!!! GCTTGTTTTTTTTTTGGTTC+AGG + chr4.4:1396355-1396374 MS.gene058594:intron 30.0%
!!! TCAGCATACATTTTTTCACT+TGG - chr4.4:1396749-1396768 None:intergenic 30.0%
AAGTTTCACTGTTGAAGTAG+TGG - chr4.4:1398816-1398835 None:intergenic 35.0%
AATCCTGTGAAACATCAAAC+AGG - chr4.4:1395471-1395490 None:intergenic 35.0%
AATTATCCTTGACAAGCATG+AGG + chr4.4:1398496-1398515 MS.gene058594:CDS 35.0%
AATTCTACTACACACAATGG+TGG - chr4.4:1394721-1394740 None:intergenic 35.0%
AATTCTCACCTAGAAGAGTA+TGG - chr4.4:1395504-1395523 None:intergenic 35.0%
AGGAACAAAAACCTCAAGAA+TGG - chr4.4:1397141-1397160 None:intergenic 35.0%
ATCCTGTGAAACATCAAACA+GGG - chr4.4:1395470-1395489 None:intergenic 35.0%
ATGCCACCATAACGTAATAT+TGG - chr4.4:1397882-1397901 None:intergenic 35.0%
ATTAAAGGGATGAAAAGGGA+AGG - chr4.4:1396147-1396166 None:intergenic 35.0%
ATTGAGGGAACTCAAAGTTA+AGG - chr4.4:1395859-1395878 None:intergenic 35.0%
CAATCCACTATTGACAACAT+AGG + chr4.4:1394851-1394870 MS.gene058594:intron 35.0%
CAGATATGTTCCAGTTAAGT+TGG + chr4.4:1399263-1399282 MS.gene058594:CDS 35.0%
CAGGATCCAATATTACGTTA+TGG + chr4.4:1397873-1397892 MS.gene058594:CDS 35.0%
CTCAAGAATGGGAAATTACA+GGG - chr4.4:1397129-1397148 None:intergenic 35.0%
GAATCTTAGAGAATACAGAC+AGG + chr4.4:1396054-1396073 MS.gene058594:CDS 35.0%
GATCCAATATTACGTTATGG+TGG + chr4.4:1397876-1397895 MS.gene058594:CDS 35.0%
GATTGTATGATTCTGATAGG+AGG - chr4.4:1398199-1398218 None:intergenic 35.0%
GCAACGAAAATTGAGAATTG+AGG - chr4.4:1395875-1395894 None:intergenic 35.0%
GGAAAATACCAACAAGCTAT+GGG + chr4.4:1395923-1395942 MS.gene058594:CDS 35.0%
GGAACAAAAACCTCAAGAAT+GGG - chr4.4:1397140-1397159 None:intergenic 35.0%
GTCTATACGCAGAATATATC+CGG + chr4.4:1396112-1396131 MS.gene058594:intron 35.0%
GTGAAAAAATGTATGCTGAG+AGG + chr4.4:1396750-1396769 MS.gene058594:CDS 35.0%
TACAATCCACATGTTCGTTA+CGG + chr4.4:1398212-1398231 MS.gene058594:CDS 35.0%
TACTTTCCTGAGGGAAAATT+TGG + chr4.4:1397068-1397087 MS.gene058594:CDS 35.0%
TCAGTAATAGCAAGAACTTC+AGG - chr4.4:1399333-1399352 None:intergenic 35.0%
TCGTTGCATTTCTTCAATTC+AGG + chr4.4:1395888-1395907 MS.gene058594:intron 35.0%
TCTTCAATTCAGGTGTATTG+TGG + chr4.4:1395898-1395917 MS.gene058594:intron 35.0%
TGACAAATGCTCAGATAATC+TGG - chr4.4:1396422-1396441 None:intergenic 35.0%
TGAGACAAGAACTCAAACTT+TGG - chr4.4:1398746-1398765 None:intergenic 35.0%
TGGAAAATACCAACAAGCTA+TGG + chr4.4:1395922-1395941 MS.gene058594:CDS 35.0%
TTAAAGGGATGAAAAGGGAA+GGG - chr4.4:1396146-1396165 None:intergenic 35.0%
TTGTCAGTGTCTTATGTTCT+TGG + chr4.4:1396436-1396455 MS.gene058594:CDS 35.0%
! ATGGACTGCATTGATAAGAT+TGG + chr4.4:1395596-1395615 MS.gene058594:intron 35.0%
! GAAAACAGTCTCACTTGTTA+TGG - chr4.4:1396844-1396863 None:intergenic 35.0%
! GCAATAGTCTTTTCTTTGAC+GGG - chr4.4:1397446-1397465 None:intergenic 35.0%
! GTGGATTGTATGATTCTGAT+AGG - chr4.4:1398202-1398221 None:intergenic 35.0%
! TGTTTTGTCAACATCAGCTA+AGG + chr4.4:1398844-1398863 MS.gene058594:CDS 35.0%
! TTGGGGTATTCAAAAAGTGA+AGG - chr4.4:1398776-1398795 None:intergenic 35.0%
!! CAATAGTGGATTGCAGAAAA+TGG - chr4.4:1394844-1394863 None:intergenic 35.0%
!! TAAGGTAAAGGTGTTTCACT+CGG + chr4.4:1397710-1397729 MS.gene058594:intron 35.0%
!! TCATCCTTTTTGATTGTACC+CGG + chr4.4:1395263-1395282 MS.gene058594:intron 35.0%
!! TTTTCACCAACGGCTTTAAT+CGG + chr4.4:1398698-1398717 MS.gene058594:CDS 35.0%
!!! ATTTTTTCACTTGGATCCTC+AGG - chr4.4:1396740-1396759 None:intergenic 35.0%
!!! GTTGTTGATTTTGTTCGTCA+GGG + chr4.4:1398317-1398336 MS.gene058594:CDS 35.0%
!!! TGTTGTTGATTTTGTTCGTC+AGG + chr4.4:1398316-1398335 MS.gene058594:CDS 35.0%
!!! TTTTGGTGTTGACCGTTAAT+AGG + chr4.4:1396229-1396248 MS.gene058594:intron 35.0%
AACTTAAGTCCTCTGGTGAT+TGG - chr4.4:1395297-1395316 None:intergenic 40.0%
AATAGCAAGAACTTCAGGCT+CGG - chr4.4:1399328-1399347 None:intergenic 40.0%
AATGAGACAAATGTTTGCGC+TGG + chr4.4:1396280-1396299 MS.gene058594:intron 40.0%
ACAAGAAGTGACAATGTGCA+AGG + chr4.4:1395992-1396011 MS.gene058594:CDS 40.0%
AGAATACAGACAGGAGGTAA+GGG + chr4.4:1396063-1396082 MS.gene058594:intron 40.0%
AGGAGTTTGATCAGCATCAA+AGG + chr4.4:1395058-1395077 MS.gene058594:CDS 40.0%
ATACATAAGGGGAACACTTG+TGG - chr4.4:1394480-1394499 None:intergenic 40.0%
ATCCAATCTCCTGCATTCAA+TGG - chr4.4:1395954-1395973 None:intergenic 40.0%
ATGCTCAGATAATCTGGTGA+AGG - chr4.4:1396416-1396435 None:intergenic 40.0%
ATGGGAAATTACAGGGAAAG+AGG - chr4.4:1397122-1397141 None:intergenic 40.0%
ATTCAACATGGTGCATGTCT+AGG + chr4.4:1397496-1397515 MS.gene058594:CDS 40.0%
ATTGTTTGATGCCTTCTCCA+TGG - chr4.4:1397364-1397383 None:intergenic 40.0%
CAAAGGCTCCAGTAAAGATA+TGG - chr4.4:1398288-1398307 None:intergenic 40.0%
CAATGTATGCATTACCTGCA+TGG - chr4.4:1398996-1399015 None:intergenic 40.0%
CAATTCAGGTGTATTGTGGA+TGG + chr4.4:1395902-1395921 MS.gene058594:intron 40.0%
CAGGAGATTGGATAAACTTG+AGG + chr4.4:1395961-1395980 MS.gene058594:CDS 40.0%
CCTCAAGAATGGGAAATTAC+AGG - chr4.4:1397130-1397149 None:intergenic 40.0%
CCTGTAATTTCCCATTCTTG+AGG + chr4.4:1397127-1397146 MS.gene058594:intron 40.0%
GACTATGTCCATACTCTTCT+AGG + chr4.4:1395493-1395512 MS.gene058594:CDS 40.0%
GATAAAGTTACTGCAGTGGT+TGG + chr4.4:1398614-1398633 MS.gene058594:CDS 40.0%
GATGTGTACTCAAATGGTTG+AGG - chr4.4:1399450-1399469 None:intergenic 40.0%
GATGTTGACAAAACAGCAGT+TGG - chr4.4:1398839-1398858 None:intergenic 40.0%
GCAGATTCTACTCAGAATAC+TGG + chr4.4:1396653-1396672 MS.gene058594:CDS 40.0%
GCATGATAAAGTTACTGCAG+TGG + chr4.4:1398610-1398629 MS.gene058594:CDS 40.0%
GCTCTGATTTCTTCTCTGTT+GGG - chr4.4:1399161-1399180 None:intergenic 40.0%
GGAATTGCTCTTACGGTTTA+CGG + chr4.4:1397804-1397823 MS.gene058594:CDS 40.0%
GGTCTTCAAAATAAGGAGGT+CGG - chr4.4:1396959-1396978 None:intergenic 40.0%
GTTGAGACTTTGGCAATGAA+AGG - chr4.4:1396601-1396620 None:intergenic 40.0%
GTTGAGCAGAGCTACTAATT+GGG + chr4.4:1397178-1397197 MS.gene058594:CDS 40.0%
TAAGAAAGCTGAGGAACAGA+AGG + chr4.4:1398883-1398902 MS.gene058594:CDS 40.0%
TAGCGGAACAGCAAACAATA+AGG + chr4.4:1397923-1397942 MS.gene058594:CDS 40.0%
TAGTGAGGCCATATCTTTAC+TGG + chr4.4:1398277-1398296 MS.gene058594:CDS 40.0%
TATCAAAGTAGACCCAAGAC+TGG + chr4.4:1395767-1395786 MS.gene058594:CDS 40.0%
TCAACAACATCCGAAGTCAA+AGG - chr4.4:1398305-1398324 None:intergenic 40.0%
TCCAGCATGCATTATTGCAT+TGG - chr4.4:1397037-1397056 None:intergenic 40.0%
TCCTGTGAAACATCAAACAG+GGG - chr4.4:1395469-1395488 None:intergenic 40.0%
TCTAACAAATCCAGCAAGAG+TGG + chr4.4:1399200-1399219 MS.gene058594:CDS 40.0%
TCTTAGAGAATACAGACAGG+AGG + chr4.4:1396057-1396076 MS.gene058594:CDS 40.0%
TGAGAGTTTGTACGAAGATG+AGG + chr4.4:1395038-1395057 MS.gene058594:CDS 40.0%
TGAGTAGAATCTGCATCACT+GGG - chr4.4:1396647-1396666 None:intergenic 40.0%
TGCCGCATTACTTGTATCAA+AGG + chr4.4:1395086-1395105 MS.gene058594:CDS 40.0%
TGGGAAATTACAGGGAAAGA+GGG - chr4.4:1397121-1397140 None:intergenic 40.0%
TTAATGAACTTCTCCTGAGC+AGG - chr4.4:1399228-1399247 None:intergenic 40.0%
TTCACTGTTGAAGTAGTGGT+GGG - chr4.4:1398812-1398831 None:intergenic 40.0%
TTTCACTGTTGAAGTAGTGG+TGG - chr4.4:1398813-1398832 None:intergenic 40.0%
! AACTCACCAAATTTTCCCTC+AGG - chr4.4:1397077-1397096 None:intergenic 40.0%
! AATTTTCTCCAATTGTCGCC+TGG - chr4.4:1398480-1398499 None:intergenic 40.0%
! AGCTCTGATTTCTTCTCTGT+TGG - chr4.4:1399162-1399181 None:intergenic 40.0%
! GACTCTAAAGGTTGAGACTT+TGG - chr4.4:1396611-1396630 None:intergenic 40.0%
! GATTAAAGCCGTTGGTGAAA+AGG - chr4.4:1398699-1398718 None:intergenic 40.0%
! GTTGGTACTTGGTAGTATGT+TGG + chr4.4:1396898-1396917 MS.gene058594:intron 40.0%
! TGCTAGTTTCAAGTCTAAGG+CGG + chr4.4:1395734-1395753 MS.gene058594:CDS 40.0%
! TTAAGAAGCACAAACCCTGA+AGG - chr4.4:1399291-1399310 None:intergenic 40.0%
! TTTACTGGAGCCTTTGACTT+CGG + chr4.4:1398292-1398311 MS.gene058594:CDS 40.0%
!! CAGTTGGTGTTACTTGTTAG+TGG + chr4.4:1395621-1395640 MS.gene058594:intron 40.0%
!! CTAATGTGTTGTTTATGGCC+AGG + chr4.4:1397471-1397490 MS.gene058594:intron 40.0%
!! CTCACTTGTTATGGCTGTAA+AGG - chr4.4:1396835-1396854 None:intergenic 40.0%
!! GAGGGTACCAATACCAAAAT+TGG - chr4.4:1398655-1398674 None:intergenic 40.0%
!! TACAAAGTGTTGTCAATCGG+CGG + chr4.4:1394778-1394797 MS.gene058594:intron 40.0%
!!! CGATGCTGTTTTTGCACATA+CGG + chr4.4:1395161-1395180 MS.gene058594:intron 40.0%
AAAAGGTAACTCGGGACAAG+AGG - chr4.4:1398082-1398101 None:intergenic 45.0%
AACCGTGGATACTTTCCTGA+GGG + chr4.4:1397059-1397078 MS.gene058594:CDS 45.0%
AAGTCTTCCAGTGAGAAGGA+TGG + chr4.4:1398965-1398984 MS.gene058594:CDS 45.0%
AATTGCACCCATCTTGCTCA+TGG - chr4.4:1398525-1398544 None:intergenic 45.0%
ACAATCTGGTCGATAGCTTC+TGG + chr4.4:1394444-1394463 MS.gene058594:CDS 45.0%
ACAGCACAAACCCTAATGCT+AGG - chr4.4:1398013-1398032 None:intergenic 45.0%
ACCAGATGATGTTCCAATGG+CGG + chr4.4:1396685-1396704 MS.gene058594:CDS 45.0%
ACTCAGAATACTGGTGTGAG+TGG + chr4.4:1396662-1396681 MS.gene058594:CDS 45.0%
ACTTGGAGCTGATGTAGAGT+CGG - chr4.4:1398933-1398952 None:intergenic 45.0%
AGCTATCGACCAGATTGTTG+AGG - chr4.4:1394442-1394461 None:intergenic 45.0%
AGGAAAGTCTTCCAGTGAGA+AGG + chr4.4:1398961-1398980 MS.gene058594:CDS 45.0%
ATCGACCAGATTGTTGAGGT+TGG - chr4.4:1394438-1394457 None:intergenic 45.0%
ATGCACCATGTTGAATGACC+TGG - chr4.4:1397492-1397511 None:intergenic 45.0%
ATGTTCTTGGATGAGCCAGA+GGG + chr4.4:1396449-1396468 MS.gene058594:CDS 45.0%
ATTCATGCCAACCATGGAGA+AGG + chr4.4:1397350-1397369 MS.gene058594:CDS 45.0%
CATAGAGGTCATTTGCAGCA+GGG + chr4.4:1397236-1397255 MS.gene058594:CDS 45.0%
CATAGCAATGGCTATGGTCA+TGG + chr4.4:1398346-1398365 MS.gene058594:CDS 45.0%
CATCTCCACAGACTGCTTTA+TGG - chr4.4:1396980-1396999 None:intergenic 45.0%
CCACAATTGCTTCCAGTCTT+GGG - chr4.4:1395782-1395801 None:intergenic 45.0%
CTGAGTAGAATCTGCATCAC+TGG - chr4.4:1396648-1396667 None:intergenic 45.0%
GAAGACCATAAAGCAGTCTG+TGG + chr4.4:1396972-1396991 MS.gene058594:CDS 45.0%
GAAGCCGGGTACAATCAAAA+AGG - chr4.4:1395270-1395289 None:intergenic 45.0%
GACCATAGCCATTGCTATGA+GGG - chr4.4:1398345-1398364 None:intergenic 45.0%
GAGAATACAGACAGGAGGTA+AGG + chr4.4:1396062-1396081 MS.gene058594:intron 45.0%
GAGGATACCATGAGCAAGAT+GGG + chr4.4:1398515-1398534 MS.gene058594:CDS 45.0%
GATAGGAGGGAAACAATTCG+AGG - chr4.4:1398185-1398204 None:intergenic 45.0%
GATGAAGAACTCTGCAATCC+TGG - chr4.4:1399396-1399415 None:intergenic 45.0%
GCAGAGTTCTTCATCAGCAA+TGG + chr4.4:1399401-1399420 MS.gene058594:CDS 45.0%
GCCAATGCAATAATGCATGC+TGG + chr4.4:1397033-1397052 MS.gene058594:CDS 45.0%
GCTTCTAAACCAATCACCAG+AGG + chr4.4:1395285-1395304 MS.gene058594:intron 45.0%
GGTTGAGCAGAGCTACTAAT+TGG + chr4.4:1397177-1397196 MS.gene058594:CDS 45.0%
GGTTTACGGAAGAGAAGAAG+AGG + chr4.4:1397818-1397837 MS.gene058594:CDS 45.0%
GTGAATCTTCAGGGAGATGT+GGG - chr4.4:1394408-1394427 None:intergenic 45.0%
GTGTACTCAAATGGTTGAGG+AGG - chr4.4:1399447-1399466 None:intergenic 45.0%
TATCAGTATGGGCCTACTCA+TGG + chr4.4:1397618-1397637 MS.gene058594:CDS 45.0%
TATGGCCAGGTCATTCAACA+TGG + chr4.4:1397484-1397503 MS.gene058594:intron 45.0%
TATGTTCTTGGATGAGCCAG+AGG + chr4.4:1396448-1396467 MS.gene058594:CDS 45.0%
TCAAATGGTTGAGGAGGTTG+AGG - chr4.4:1399441-1399460 None:intergenic 45.0%
TCCACAATTGCTTCCAGTCT+TGG - chr4.4:1395783-1395802 None:intergenic 45.0%
TCCCCTGTTTGATGTTTCAC+AGG + chr4.4:1395465-1395484 MS.gene058594:CDS 45.0%
TCTCTCCAACCTCAACAATC+TGG + chr4.4:1394430-1394449 MS.gene058594:CDS 45.0%
TGACCATAGCCATTGCTATG+AGG - chr4.4:1398346-1398365 None:intergenic 45.0%
TGAGGATACCATGAGCAAGA+TGG + chr4.4:1398514-1398533 MS.gene058594:CDS 45.0%
TGCATGTCTAGGTCTTGGAT+TGG + chr4.4:1397507-1397526 MS.gene058594:CDS 45.0%
TGCCATTGAATGCAGGAGAT+TGG + chr4.4:1395949-1395968 MS.gene058594:CDS 45.0%
TGGACCAGATGATGTTCCAA+TGG + chr4.4:1396682-1396701 MS.gene058594:CDS 45.0%
TGGCATAAATGGTAGCACTG+TGG - chr4.4:1397017-1397036 None:intergenic 45.0%
TGGTATCCTCATGCTTGTCA+AGG - chr4.4:1398505-1398524 None:intergenic 45.0%
TTACGGAAGAGAAGAAGAGG+CGG + chr4.4:1397821-1397840 MS.gene058594:CDS 45.0%
TTATGGTGGCATGTATGCAC+TGG + chr4.4:1397890-1397909 MS.gene058594:CDS 45.0%
TTCAGACCGATTAAAGCCGT+TGG - chr4.4:1398707-1398726 None:intergenic 45.0%
TTCTGACATGCGTGTATTCC+AGG + chr4.4:1398459-1398478 MS.gene058594:intron 45.0%
TTCTTCATCAGCAATGGCTG+TGG + chr4.4:1399407-1399426 MS.gene058594:CDS 45.0%
TTGGGCCAAATTCAGTGCAA+CGG + chr4.4:1397196-1397215 MS.gene058594:CDS 45.0%
TTTCTTACTAGCCCTGGCTT+TGG - chr4.4:1398870-1398889 None:intergenic 45.0%
TTTGATGCCTTCTCCATGGT+TGG - chr4.4:1397360-1397379 None:intergenic 45.0%
! AAAGGGAAGGGACGATTTTC+CGG - chr4.4:1396134-1396153 None:intergenic 45.0%
! ATCTCTAGGAACTGCTGATG+AGG + chr4.4:1397531-1397550 MS.gene058594:CDS 45.0%
! ATGTGAGTGATGATGTCAGG+AGG + chr4.4:1397979-1397998 MS.gene058594:CDS 45.0%
! CTGATGTGAGTGATGATGTC+AGG + chr4.4:1397976-1397995 MS.gene058594:CDS 45.0%
! GAATCTGCATCACTGGGTTT+TGG - chr4.4:1396641-1396660 None:intergenic 45.0%
! GACTTTCCTTTTCCAGCACT+TGG - chr4.4:1398950-1398969 None:intergenic 45.0%
! GAGCAAGATGGGTGCAATTT+TGG + chr4.4:1398526-1398545 MS.gene058594:CDS 45.0%
! TACACTGATAGTGCTGTTGC+CGG + chr4.4:1397583-1397602 MS.gene058594:CDS 45.0%
! TGAGTGGCTGTAGTCTGTTT+TGG + chr4.4:1398114-1398133 MS.gene058594:intron 45.0%
!! AAGCTTGGCCTTTTCACCAA+CGG + chr4.4:1398688-1398707 MS.gene058594:CDS 45.0%
!! AGCTCTGGGAATTGCTCTTA+CGG + chr4.4:1397797-1397816 MS.gene058594:CDS 45.0%
!! ATGTTTCAGAGGGTTAGCTC+TGG + chr4.4:1397782-1397801 MS.gene058594:intron 45.0%
!! CAGTTAAGTTGGCACCTTCA+GGG + chr4.4:1399274-1399293 MS.gene058594:CDS 45.0%
!! CTGGTGATTGGTTTAGAAGC+CGG - chr4.4:1395285-1395304 None:intergenic 45.0%
!! GGACTTGGTGTTATCCATAG+AGG + chr4.4:1397221-1397240 MS.gene058594:CDS 45.0%
!! TACTGCTACTGACTCACGAT+AGG + chr4.4:1394747-1394766 MS.gene058594:intron 45.0%
!! TGGTGATTGGTTTAGAAGCC+GGG - chr4.4:1395284-1395303 None:intergenic 45.0%
!! TGTTTCAGAGGGTTAGCTCT+GGG + chr4.4:1397783-1397802 MS.gene058594:intron 45.0%
!! TTCCCTCAGGAAAGTATCCA+CGG - chr4.4:1397064-1397083 None:intergenic 45.0%
!! TTTGGCTCTACGGACTCTAA+AGG - chr4.4:1396623-1396642 None:intergenic 45.0%
!!! ATCACTGGGTTTTGGCTCTA+CGG - chr4.4:1396633-1396652 None:intergenic 45.0%
AATATGCTTGCAACCCCCTC+TGG - chr4.4:1396467-1396486 None:intergenic 50.0%
AATGCATGCTGGAACAACCG+TGG + chr4.4:1397044-1397063 MS.gene058594:CDS 50.0%
AGAGGGGGTTGCAAGCATAT+TGG + chr4.4:1396466-1396485 MS.gene058594:CDS 50.0%
AGATGCTGGATTTCGTCTCC+TGG + chr4.4:1395344-1395363 MS.gene058594:intron 50.0%
AGGACAGAACTAACCTGCTC+TGG - chr4.4:1398044-1398063 None:intergenic 50.0%
AGGACTGCAGTCCTAGCATT+AGG + chr4.4:1397999-1398018 MS.gene058594:CDS 50.0%
AGTATGGGCCTACTCATGGT+TGG + chr4.4:1397622-1397641 MS.gene058594:CDS 50.0%
ATCAGCAATGGCTGTGGATG+AGG + chr4.4:1399413-1399432 MS.gene058594:CDS 50.0%
ATCAGCTAAGGCCAAAGCCA+GGG + chr4.4:1398856-1398875 MS.gene058594:CDS 50.0%
ATTCGAGGAGTCTGCAGTGT+AGG - chr4.4:1398170-1398189 None:intergenic 50.0%
ATTCGCGTGTTGGAACCTTC+AGG + chr4.4:1398390-1398409 MS.gene058594:CDS 50.0%
CAACCGTGGATACTTTCCTG+AGG + chr4.4:1397058-1397077 MS.gene058594:CDS 50.0%
CATGGTGCATGTCTAGGTCT+TGG + chr4.4:1397502-1397521 MS.gene058594:CDS 50.0%
CATTTCTTCCGCCAGCATCA+AGG - chr4.4:1398562-1398581 None:intergenic 50.0%
CCAGAGAAGCCGTGGTTTAA+CGG - chr4.4:1397740-1397759 None:intergenic 50.0%
CCATAGAGGTCATTTGCAGC+AGG + chr4.4:1397235-1397254 MS.gene058594:CDS 50.0%
CCCAAGACTGGAAGCAATTG+TGG + chr4.4:1395779-1395798 MS.gene058594:CDS 50.0%
CCTGCTGCAAATGACCTCTA+TGG - chr4.4:1397238-1397257 None:intergenic 50.0%
CGTGAATCTTCAGGGAGATG+TGG - chr4.4:1394409-1394428 None:intergenic 50.0%
CGTGTATTCCAGGCGACAAT+TGG + chr4.4:1398469-1398488 MS.gene058594:intron 50.0%
CGTGTTGGAACCTTCAGGTA+AGG + chr4.4:1398395-1398414 MS.gene058594:intron 50.0%
CTACGACATCAACTGCTGGT+GGG + chr4.4:1399364-1399383 MS.gene058594:CDS 50.0%
CTCAGCTTTCTTACTAGCCC+TGG - chr4.4:1398876-1398895 None:intergenic 50.0%
CTCGGCAATCCGTTAAACCA+CGG + chr4.4:1397728-1397747 MS.gene058594:intron 50.0%
CTTGGAGCTGATGTAGAGTC+GGG - chr4.4:1398932-1398951 None:intergenic 50.0%
GAAGCTAGTGATTCGCGTGT+TGG + chr4.4:1398380-1398399 MS.gene058594:CDS 50.0%
GACTCACTATCCTATGCCCT+TGG + chr4.4:1395436-1395455 MS.gene058594:CDS 50.0%
GAGGCTGCTGGTATCAGTAT+GGG + chr4.4:1397607-1397626 MS.gene058594:CDS 50.0%
GCATCTACGACATCAACTGC+TGG + chr4.4:1399360-1399379 MS.gene058594:CDS 50.0%
GGAACACTTGTGGAGATCTC+TGG - chr4.4:1394470-1394489 None:intergenic 50.0%
GGACTGCAGTCCTAGCATTA+GGG + chr4.4:1398000-1398019 MS.gene058594:CDS 50.0%
GGTAGTCCATACTCAGAAGG+TGG + chr4.4:1397305-1397324 MS.gene058594:CDS 50.0%
GGTCTGATTCATGCCAACCA+TGG + chr4.4:1397344-1397363 MS.gene058594:CDS 50.0%
GGTGGTAGTCCATACTCAGA+AGG + chr4.4:1397302-1397321 MS.gene058594:CDS 50.0%
GGTTGGAACAGGCAGTGATA+AGG + chr4.4:1397639-1397658 MS.gene058594:CDS 50.0%
GTTGGCATGAATCAGACCGA+GGG - chr4.4:1397342-1397361 None:intergenic 50.0%
TCCAGCCGTTGCACTGAATT+TGG - chr4.4:1397204-1397223 None:intergenic 50.0%
TCCGCCATTGGAACATCATC+TGG - chr4.4:1396689-1396708 None:intergenic 50.0%
TCTACATCAGCTCCAAGTGC+TGG + chr4.4:1398935-1398954 MS.gene058594:CDS 50.0%
TCTACGACATCAACTGCTGG+TGG + chr4.4:1399363-1399382 MS.gene058594:CDS 50.0%
TGAGCAGATGACTCGAGATC+AGG + chr4.4:1397854-1397873 MS.gene058594:CDS 50.0%
TGAGGCTGCTGGTATCAGTA+TGG + chr4.4:1397606-1397625 MS.gene058594:CDS 50.0%
TGCCCTCATAGCAATGGCTA+TGG + chr4.4:1398340-1398359 MS.gene058594:CDS 50.0%
TGCCTGTTCCAACCATGAGT+AGG - chr4.4:1397633-1397652 None:intergenic 50.0%
TGCTGTGGGTATTTCCTGTG+CGG + chr4.4:1398244-1398263 MS.gene058594:CDS 50.0%
TGGGAACTGCCATTGAATGC+AGG + chr4.4:1395942-1395961 MS.gene058594:CDS 50.0%
TGTTCTTGGATGAGCCAGAG+GGG + chr4.4:1396450-1396469 MS.gene058594:CDS 50.0%
TTCTGCTGTCAATGTGCCTG+AGG + chr4.4:1396721-1396740 MS.gene058594:CDS 50.0%
! AGAGCACCACCTTCTGAGTA+TGG - chr4.4:1397314-1397333 None:intergenic 50.0%
! CAGGGCTAGTAAGAAAGCTG+AGG + chr4.4:1398874-1398893 MS.gene058594:CDS 50.0%
! GATGATGTTCCAATGGCGGA+CGG + chr4.4:1396689-1396708 MS.gene058594:CDS 50.0%
! GCAGTTGATGTCGTAGATGC+AGG - chr4.4:1399360-1399379 None:intergenic 50.0%
! GGAGAGAGCGTGAATCTTCA+GGG - chr4.4:1394417-1394436 None:intergenic 50.0%
! TGGAGAGAGCGTGAATCTTC+AGG - chr4.4:1394418-1394437 None:intergenic 50.0%
! TGGCAGTTCCCATAGCTTGT+TGG - chr4.4:1395934-1395953 None:intergenic 50.0%
!! ATGATGTTCCAATGGCGGAC+GGG + chr4.4:1396690-1396709 MS.gene058594:CDS 50.0%
!! ATGGGTGCAATTTTGGCCTC+CGG + chr4.4:1398533-1398552 MS.gene058594:CDS 50.0%
!! CCAGTTAAGTTGGCACCTTC+AGG + chr4.4:1399273-1399292 MS.gene058594:CDS 50.0%
!! CCTGAAGGTGCCAACTTAAC+TGG - chr4.4:1399276-1399295 None:intergenic 50.0%
!! GGTCTTGGATTGGCATCTCT+AGG + chr4.4:1397517-1397536 MS.gene058594:CDS 50.0%
!! TCAGCTCCAAGTGCTGGAAA+AGG + chr4.4:1398941-1398960 MS.gene058594:CDS 50.0%
!! TGGCATGTATGCACTGGCTT+TGG + chr4.4:1397896-1397915 MS.gene058594:CDS 50.0%
AAACAGGGGACCAGCTCCAA+GGG - chr4.4:1395455-1395474 None:intergenic 55.0%
ACTAAGACCTGTACCCGCAC+AGG - chr4.4:1398261-1398280 None:intergenic 55.0%
ACTGATACCAGCAGCCTCAC+CGG - chr4.4:1397605-1397624 None:intergenic 55.0%
AGCAAGAGTGGTTCCTGCTC+AGG + chr4.4:1399212-1399231 MS.gene058594:CDS 55.0%
CATCAGCTAAGGCCAAAGCC+AGG + chr4.4:1398855-1398874 MS.gene058594:CDS 55.0%
CCGTTAAACCACGGCTTCTC+TGG + chr4.4:1397737-1397756 MS.gene058594:intron 55.0%
CTATCCTATGCCCTTGGAGC+TGG + chr4.4:1395442-1395461 MS.gene058594:CDS 55.0%
GAAGGATGGAGAAGCCATGC+AGG + chr4.4:1398979-1398998 MS.gene058594:CDS 55.0%
GAGGTCATTTGCAGCAGGGA+AGG + chr4.4:1397240-1397259 MS.gene058594:CDS 55.0%
GCCAAATTCAGTGCAACGGC+TGG + chr4.4:1397200-1397219 MS.gene058594:CDS 55.0%
GCTGCTCCGTAACGAACATG+TGG - chr4.4:1398221-1398240 None:intergenic 55.0%
GCTGTACTCTGATCCAGAGC+AGG + chr4.4:1398028-1398047 MS.gene058594:CDS 55.0%
GCTGTGGGTATTTCCTGTGC+GGG + chr4.4:1398245-1398264 MS.gene058594:CDS 55.0%
GGCACATTGACAGCAGAAGC+TGG - chr4.4:1396719-1396738 None:intergenic 55.0%
GGCCTACTCATGGTTGGAAC+AGG + chr4.4:1397628-1397647 MS.gene058594:CDS 55.0%
GGCTTCTCCATCCTTCTCAC+TGG - chr4.4:1398975-1398994 None:intergenic 55.0%
GGTATTTCCTGTGCGGGTAC+AGG + chr4.4:1398251-1398270 MS.gene058594:CDS 55.0%
GGTGGTGCTCTTTATGCCCT+CGG + chr4.4:1397323-1397342 MS.gene058594:CDS 55.0%
GGTTGGCATGAATCAGACCG+AGG - chr4.4:1397343-1397362 None:intergenic 55.0%
GTGGGAACAGTCGTAGGCTT+GGG - chr4.4:1398794-1398813 None:intergenic 55.0%
GTTCTTGGATGAGCCAGAGG+GGG + chr4.4:1396451-1396470 MS.gene058594:CDS 55.0%
TATCAGAGCCAGAGAAGCCG+TGG - chr4.4:1397748-1397767 None:intergenic 55.0%
TCCGCCAGCATCAAGGATTC+CGG - chr4.4:1398555-1398574 None:intergenic 55.0%
TCCGGAATCCTTGATGCTGG+CGG + chr4.4:1398551-1398570 MS.gene058594:CDS 55.0%
TCGTGCTGCGCAAGCTATCA+CGG - chr4.4:1397391-1397410 None:intergenic 55.0%
TGAGCAGGAACCACTCTTGC+TGG - chr4.4:1399213-1399232 None:intergenic 55.0%
TGCGGGTACAGGTCTTAGTG+AGG + chr4.4:1398262-1398281 MS.gene058594:CDS 55.0%
TGGGAACAGTCGTAGGCTTG+GGG - chr4.4:1398793-1398812 None:intergenic 55.0%
TTACGGAGCAGCTCTTGCTG+TGG + chr4.4:1398229-1398248 MS.gene058594:CDS 55.0%
TTCAGTGCAACGGCTGGACT+TGG + chr4.4:1397206-1397225 MS.gene058594:CDS 55.0%
! ACATCAACTGCTGGTGGGTC+AGG + chr4.4:1399369-1399388 MS.gene058594:CDS 55.0%
! GCAAGAACTTCAGGCTCGGT+AGG - chr4.4:1399324-1399343 None:intergenic 55.0%
! GTAGTGGTGGGAACAGTCGT+AGG - chr4.4:1398800-1398819 None:intergenic 55.0%
! TACGGAGCAGCTCTTGCTGT+GGG + chr4.4:1398230-1398249 MS.gene058594:CDS 55.0%
! TCAGGGTGCCCTCATAGCAA+TGG + chr4.4:1398334-1398353 MS.gene058594:CDS 55.0%
! TGATAGTGCTGTTGCCGGTG+AGG + chr4.4:1397588-1397607 MS.gene058594:CDS 55.0%
!! GCACTGGCTTTGGCGTATAG+CGG + chr4.4:1397906-1397925 MS.gene058594:CDS 55.0%
!! TGATGTTCCAATGGCGGACG+GGG + chr4.4:1396691-1396710 MS.gene058594:CDS 55.0%
ACGACGTTGGTCAGCTCAGC+CGG + chr4.4:1394356-1394375 MS.gene058594:CDS 60.0%
AGTCCCACCCTGAGGCAAGT+AGG - chr4.4:1397279-1397298 None:intergenic 60.0%
ATGGCGCCCTACTTGCCTCA+GGG + chr4.4:1397269-1397288 MS.gene058594:CDS 60.0%
CAAACAGGGGACCAGCTCCA+AGG - chr4.4:1395456-1395475 None:intergenic 60.0%
CAGCATGGCCAACATGCCAC+CGG - chr4.4:1394378-1394397 None:intergenic 60.0%
CTTGCGCAGCACGACTGTTG+AGG + chr4.4:1397397-1397416 MS.gene058594:CDS 60.0%
GATGTGGGACTCGTGCAGCA+TGG - chr4.4:1394393-1394412 None:intergenic 60.0%
GCAGCAGGGAAGGTCACTGA+TGG + chr4.4:1397250-1397269 MS.gene058594:CDS 60.0%
GCCAGCATCAAGGATTCCGG+AGG - chr4.4:1398552-1398571 None:intergenic 60.0%
GCCTCCGGAATCCTTGATGC+TGG + chr4.4:1398548-1398567 MS.gene058594:CDS 60.0%
GGTGGGAACAGTCGTAGGCT+TGG - chr4.4:1398795-1398814 None:intergenic 60.0%
GTCCCACCCTGAGGCAAGTA+GGG - chr4.4:1397278-1397297 None:intergenic 60.0%
TACTTGCCTCAGGGTGGGAC+TGG + chr4.4:1397278-1397297 MS.gene058594:CDS 60.0%
TGCTGCGCAAGCTATCACGG+AGG - chr4.4:1397388-1397407 None:intergenic 60.0%
ACGTTGGTCAGCTCAGCCGG+TGG + chr4.4:1394359-1394378 MS.gene058594:CDS 65.0%
CAGCTCAGCCGGTGGCATGT+TGG + chr4.4:1394367-1394386 MS.gene058594:CDS 65.0%
CGCCCTACTTGCCTCAGGGT+GGG + chr4.4:1397273-1397292 MS.gene058594:CDS 65.0%
GATGGCGCCCTACTTGCCTC+AGG + chr4.4:1397268-1397287 MS.gene058594:CDS 65.0%
TTGCCTCAGGGTGGGACTGG+TGG + chr4.4:1397281-1397300 MS.gene058594:CDS 65.0%
! ACTGCTGGTGGGTCAGGACC+AGG + chr4.4:1399375-1399394 MS.gene058594:CDS 65.0%
! GGGACCAGCTCCAAGGGCAT+AGG - chr4.4:1395449-1395468 None:intergenic 65.0%
CCACCACCAGTCCCACCCTG+AGG - chr4.4:1397287-1397306 None:intergenic 70.0%
GCGCCCTACTTGCCTCAGGG+TGG + chr4.4:1397272-1397291 MS.gene058594:CDS 70.0%
GCTGTTGCCGGTGAGGCTGC+TGG + chr4.4:1397595-1397614 MS.gene058594:CDS 70.0%
! CCTCAGGGTGGGACTGGTGG+TGG + chr4.4:1397284-1397303 MS.gene058594:CDS 70.0%
! GCTGGTTCCCCGTCCGCCAT+TGG - chr4.4:1396701-1396720 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 1394350 1399473 1394350 ID=MS.gene058594
chr4.4 mRNA 1394350 1399473 1394350 ID=MS.gene058594.t1;Parent=MS.gene058594
chr4.4 exon 1394350 1394495 1394350 ID=MS.gene058594.t1.exon1;Parent=MS.gene058594.t1
chr4.4 CDS 1394350 1394495 1394350 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1395038 1395107 1395038 ID=MS.gene058594.t1.exon2;Parent=MS.gene058594.t1
chr4.4 CDS 1395038 1395107 1395038 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1395409 1395514 1395409 ID=MS.gene058594.t1.exon3;Parent=MS.gene058594.t1
chr4.4 CDS 1395409 1395514 1395409 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1395715 1395817 1395715 ID=MS.gene058594.t1.exon4;Parent=MS.gene058594.t1
chr4.4 CDS 1395715 1395817 1395715 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1395910 1396078 1395910 ID=MS.gene058594.t1.exon5;Parent=MS.gene058594.t1
chr4.4 CDS 1395910 1396078 1395910 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1396377 1396849 1396377 ID=MS.gene058594.t1.exon6;Parent=MS.gene058594.t1
chr4.4 CDS 1396377 1396849 1396377 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1396954 1397089 1396954 ID=MS.gene058594.t1.exon7;Parent=MS.gene058594.t1
chr4.4 CDS 1396954 1397089 1396954 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1397173 1397418 1397173 ID=MS.gene058594.t1.exon8;Parent=MS.gene058594.t1
chr4.4 CDS 1397173 1397418 1397173 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1397493 1397713 1397493 ID=MS.gene058594.t1.exon9;Parent=MS.gene058594.t1
chr4.4 CDS 1397493 1397713 1397493 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1397791 1398049 1397791 ID=MS.gene058594.t1.exon10;Parent=MS.gene058594.t1
chr4.4 CDS 1397791 1398049 1397791 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1398179 1398411 1398179 ID=MS.gene058594.t1.exon11;Parent=MS.gene058594.t1
chr4.4 CDS 1398179 1398411 1398179 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1398481 1399000 1398481 ID=MS.gene058594.t1.exon12;Parent=MS.gene058594.t1
chr4.4 CDS 1398481 1399000 1398481 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
chr4.4 exon 1399150 1399473 1399150 ID=MS.gene058594.t1.exon13;Parent=MS.gene058594.t1
chr4.4 CDS 1399150 1399473 1399150 ID=cds.MS.gene058594.t1;Parent=MS.gene058594.t1
Gene Sequence

>MS.gene058594

ATGGCTACGACGTTGGTCAGCTCAGCCGGTGGCATGTTGGCCATGCTGCACGAGTCCCACATCTCCCTGAAGATTCACGCTCTCTCCAACCTCAACAATCTGGTCGATAGCTTCTGGCCAGAGATCTCCACAAGTGTTCCCCTTATGTATGTAATCACTCTTTTTTCAACTTTCTTTGATTTCATGCTTTTCGGTTTCAATTGCTTCGCTCTTCTTTGTTTTTTTAATTAGTTTTTCAATTATAGCAATACTTTTTGTTTCAATTACATTTTTGTAGTCAAATTCTACTTGCAAGAGTTTATTTTCAATCGTGTAGGTTTAGTGACAAAATTCAACATTTCAGTCTTGAATAGTGTTGACGAATAGCACCACCATTGTGTGTAGTAGAATTTGAACATACTGCTACTGACTCACGATAGGCTATTTAGTACAAAGTGTTGTCAATCGGCGGATATAGTTAGAGTATTAATAGCGAGAATTTGAACAAAACGCCATTTTCTGCAATCCACTATTGACAACATAGGTTTTGAAAGCTTCTGAATTAAGGGGATTTATACCAAATCATTAAGACTTGTTGATATCATGTTTCTTTCTTACTTGGTTGAATTAGTTTTTTAGTGTTAATTTGTTGGAATGAGAATGTTTTTGGGGTTTAAACACGTGTGTTTCTTATGCATGTGTTAAACAGTGAGAGTTTGTACGAAGATGAGGAGTTTGATCAGCATCAAAGGCAACTTGCCGCATTACTTGTATCAAAGGTAGTGTATTCTGCTTATTATTTGAACTGTCACATGTTCTATTGATAACTGTGCGATGCTGTTTTTGCACATACGGAGTCTCTTTCGTCAAGTAGCTAAGCTGTTATGATGTGTTTTACATGATATTTGAGATAACAAATAAGTATTGTCGGCTTTCATCCTTTTTGATTGTACCCGGCTTCTAAACCAATCACCAGAGGACTTAAGTTTTTTCATATCCATATATTATTATTCTTAGATGCTGGATTTCGTCTCCTGGTTTGTATTTTAGTATCTGATTTTTCTTCACTCTTTATCTTAGGTCTTTTATTACTTGGGCGAGTTGAATGACTCACTATCCTATGCCCTTGGAGCTGGTCCCCTGTTTGATGTTTCACAGGATTCTGACTATGTCCATACTCTTCTAGGTGAGAATTGTTATTTTTTTTTATTCTATTTAATTTAAAGCTGTATGCAGATCTTTCAAGAATACTATGATCTCTTTGAAAATGGACTGCATTGATAAGATTGGTTCAGTTGGTGTTACTTGTTAGTGGTTTTATTCATTTTGGTATAATGAAATCATATGTTCTATTCCACGACAATTTATAAAATATTATGTTTTCAGCTAAGGCTATAGATGAATATGCTAGTTTCAAGTCTAAGGCGGCAGATGAATCTATCAAAGTAGACCCAAGACTGGAAGCAATTGTGGAGAGATTGTTAGATAAGTATGTATAAACTATAATTATTCTTATGTTTTTTGTATCCTTAACTTTGAGTTCCCTCAATTCTCAATTTTCGTTGCATTTCTTCAATTCAGGTGTATTGTGGATGGAAAATACCAACAAGCTATGGGAACTGCCATTGAATGCAGGAGATTGGATAAACTTGAGGAAGCAATTACAAGAAGTGACAATGTGCAAGGCACTCTCTCATACTGCATTCATGTCTCGCATTCCTTTGTGAATCTTAGAGAATACAGACAGGAGGTAAGGGAAATGAGATCTTATAGTTATATTGAAGTCTATACGCAGAATATATCCGGAAAATCGTCCCTTCCCTTTTCATCCCTTTAATTTTAGTCATTGAGCTATATTCCATTGAAATTTTTATGATTTTAATCATCTTTTAAACATCTCTTTTGGTGTTGACCGTTAATAGGACTCTCAAATCTTTAGCAACTGTTCTCAAATGAGACAAATGTTTGCGCTGGAAATATTTATATAGAATTTTTAACAGCGGTGGTCTTGACAAAAGTTGATATTGCTTGTTTTTTTTTTGGTTCAGGTTCTCCGTCTCCTTGTTAAAGTATTTCAAAAGCTTCCTTCACCAGATTATCTGAGCATTTGTCAGTGTCTTATGTTCTTGGATGAGCCAGAGGGGGTTGCAAGCATATTGGAAAAACTTTTACGTTCTGAAAACAAAGATGATGCTCTTTTGGCACTTCAAATAGCTTTTGATTTGGTCGAGAATGAGCACCAAGCTTTTCTTCTAAATGTCAGAGATCGCCTTTCATTGCCAAAGTCTCAACCTTTAGAGTCCGTAGAGCCAAAACCCAGTGATGCAGATTCTACTCAGAATACTGGTGTGAGTGGACCAGATGATGTTCCAATGGCGGACGGGGAACCAGCTTCTGCTGTCAATGTGCCTGAGGATCCAAGTGAAAAAATGTATGCTGAGAGGTTAAACAAAATAAAGGGAATTTTGTCTGGAGAAACTTCGATACAGCTGACTCTGCAGTTCCTTTACAGCCATAACAAGTGAGACTGTTTTCTTTTAATAATATTTTATTAGATAATCATTTATTTGTTGGTACTTGGTAGTATGTTGGTTCTTATACTGTTTGGATGTAATTTGCATTCAGATCCGACCTCCTTATTTTGAAGACCATAAAGCAGTCTGTGGAGATGAGAAATAGTGTCTGCCACAGTGCTACCATTTATGCCAATGCAATAATGCATGCTGGAACAACCGTGGATACTTTCCTGAGGGAAAATTTGGTGAGTTATTATCGCATAGTTTTGTTTTCCCTCTTTCCCTGTAATTTCCCATTCTTGAGGTTTTTGTTCCTTGAAAATTGTAGGATTGGTTGAGCAGAGCTACTAATTGGGCCAAATTCAGTGCAACGGCTGGACTTGGTGTTATCCATAGAGGTCATTTGCAGCAGGGAAGGTCACTGATGGCGCCCTACTTGCCTCAGGGTGGGACTGGTGGTGGTAGTCCATACTCAGAAGGTGGTGCTCTTTATGCCCTCGGTCTGATTCATGCCAACCATGGAGAAGGCATCAAACAATTCCTCCGTGATAGCTTGCGCAGCACGACTGTTGAGGTGCTCATAAATATAGATAATTCTCCCGTCAAAGAAAAGACTATTGCTATATCTAATGTGTTGTTTATGGCCAGGTCATTCAACATGGTGCATGTCTAGGTCTTGGATTGGCATCTCTAGGAACTGCTGATGAGGATATTTATGAAGAAATAAAAAATGTTCTGTACACTGATAGTGCTGTTGCCGGTGAGGCTGCTGGTATCAGTATGGGCCTACTCATGGTTGGAACAGGCAGTGATAAGGCAAATGAAATGCTCACTTATGCACACGAGACACAACACGAAAAAATTATAAGGTAAAGGTGTTTCACTCGGCAATCCGTTAAACCACGGCTTCTCTGGCTCTGATATTTATTGTTTCTAAATGTTTCAGAGGGTTAGCTCTGGGAATTGCTCTTACGGTTTACGGAAGAGAAGAAGAGGCGGACACTTTAATTGAGCAGATGACTCGAGATCAGGATCCAATATTACGTTATGGTGGCATGTATGCACTGGCTTTGGCGTATAGCGGAACAGCAAACAATAAGGCCATTCGTCAATTACTTCACTTTGCTGTGTCTGATGTGAGTGATGATGTCAGGAGGACTGCAGTCCTAGCATTAGGGTTTGTGCTGTACTCTGATCCAGAGCAGGTTAGTTCTGTCCTTTTCTTTTTATATTTCCTCTTGTCCCGAGTTACCTTTTTTTTTTTTTTTTTGAGTGGCTGTAGTCTGTTTTGGTTGATTTTTTGTGATTTACAATGTTACTTTCCTACACTGCAGACTCCTCGAATTGTTTCCCTCCTATCAGAATCATACAATCCACATGTTCGTTACGGAGCAGCTCTTGCTGTGGGTATTTCCTGTGCGGGTACAGGTCTTAGTGAGGCCATATCTTTACTGGAGCCTTTGACTTCGGATGTTGTTGATTTTGTTCGTCAGGGTGCCCTCATAGCAATGGCTATGGTCATGGTTCAGATTAGTGAAGCTAGTGATTCGCGTGTTGGAACCTTCAGGTAAGGAAAGTATATTATTTGGATGTTGAAGCAATAAATCTGTTAATTTCTGACATGCGTGTATTCCAGGCGACAATTGGAGAAAATTATCCTTGACAAGCATGAGGATACCATGAGCAAGATGGGTGCAATTTTGGCCTCCGGAATCCTTGATGCTGGCGGAAGAAATGTGACCATAAGACTACTTTCTAAGACTAAGCATGATAAAGTTACTGCAGTGGTTGGTCTTGCAGTTTTCAGCCAATTTTGGTATTGGTACCCTCTTATCTATTTCATAAGCTTGGCCTTTTCACCAACGGCTTTAATCGGTCTGAACTATGATCTGAAATCTCCAAAGTTTGAGTTCTTGTCTCATGCAAAGCCTTCACTTTTTGAATACCCCAAGCCTACGACTGTTCCCACCACTACTTCAACAGTGAAACTTCCAACTGCTGTTTTGTCAACATCAGCTAAGGCCAAAGCCAGGGCTAGTAAGAAAGCTGAGGAACAGAAGGCTAATGCTGAAATTGCATCTAGTCCCGACTCTACATCAGCTCCAAGTGCTGGAAAAGGAAAGTCTTCCAGTGAGAAGGATGGAGAAGCCATGCAGGTAATGCATACATTGTCACATTATAAGTGAAGATTGTTTTATTACAGTTCTCTCGATTAATGACTTGTCAGATAACATTATTATTTCTGTTAAAATATTTGATTTCTACGTGCAACTTAATAAGATTCCGAAACTTTATTGTTTTAAAGGTTGATAGCCCAACAGAGAAGAAATCAGAGCTCGATCCTACTTTTGAGATTCTAACAAATCCAGCAAGAGTGGTTCCTGCTCAGGAGAAGTTCATTAAATTTTTGCAGGACAGCAGATATGTTCCAGTTAAGTTGGCACCTTCAGGGTTTGTGCTTCTTAAAGACTTGCGTCCTACCGAGCCTGAAGTTCTTGCTATTACTGACACACCTGCATCTACGACATCAACTGCTGGTGGGTCAGGACCAGGATTGCAGAGTTCTTCATCAGCAATGGCTGTGGATGAGGAGCCTCAACCTCCTCAACCATTTGAGTACACATCTTAA

Protein sequence

>MS.gene058594.t1

MATTLVSSAGGMLAMLHESHISLKIHALSNLNNLVDSFWPEISTSVPLIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSQDSDYVHTLLAKAIDEYASFKSKAADESIKVDPRLEAIVERLLDKCIVDGKYQQAMGTAIECRRLDKLEEAITRSDNVQGTLSYCIHVSHSFVNLREYRQEVLRLLVKVFQKLPSPDYLSICQCLMFLDEPEGVASILEKLLRSENKDDALLALQIAFDLVENEHQAFLLNVRDRLSLPKSQPLESVEPKPSDADSTQNTGVSGPDDVPMADGEPASAVNVPEDPSEKMYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGTGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTTVEVIQHGACLGLGLASLGTADEDIYEEIKNVLYTDSAVAGEAAGISMGLLMVGTGSDKANEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSDPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVTAVVGLAVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKSPKFEFLSHAKPSLFEYPKPTTVPTTTSTVKLPTAVLSTSAKAKARASKKAEEQKANAEIASSPDSTSAPSAGKGKSSSEKDGEAMQVDSPTEKKSELDPTFEILTNPARVVPAQEKFIKFLQDSRYVPVKLAPSGFVLLKDLRPTEPEVLAITDTPASTTSTAGGSGPGLQSSSSAMAVDEEPQPPQPFEYTS