Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55853.t1 | RHN43535.1 | 99.7 | 316 | 1 | 0 | 1 | 316 | 1 | 316 | 2.30E-172 | 614.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55853.t1 | O48726 | 69.2 | 299 | 90 | 2 | 4 | 301 | 2 | 299 | 1.9e-111 | 403.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55853.t1 | G7LIU7 | 99.7 | 316 | 1 | 0 | 1 | 316 | 1 | 316 | 1.7e-172 | 614.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene55853 | 0.802414 | 5.67E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene55853 | 0.838894 | 2.19E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene55853 | 0.81873 | 1.68E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene55853 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene05134 | MS.gene55853 | 0.825857 | 3.73E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene55853 | 0.838812 | 2.30E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene55853 | 0.805301 | 1.43E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene55853 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene55853 | 0.808156 | 3.56E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene55853 | 0.814496 | 1.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74847 | MS.gene55853 | PPI |
| MS.gene57118 | MS.gene55853 | PPI |
| MS.gene95863 | MS.gene55853 | PPI |
| MS.gene62646 | MS.gene55853 | PPI |
| MS.gene55853 | MS.gene058594 | PPI |
| MS.gene55853 | MS.gene015610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55853.t1 | MTR_8g101230 | 99.684 | 316 | 1 | 0 | 1 | 316 | 1 | 316 | 0.0 | 632 |
| MS.gene55853.t1 | MTR_8g101230 | 97.785 | 316 | 1 | 1 | 1 | 316 | 1 | 310 | 0.0 | 612 |
| MS.gene55853.t1 | MTR_8g101230 | 99.636 | 275 | 1 | 0 | 1 | 275 | 1 | 275 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55853.t1 | AT2G26590 | 67.732 | 313 | 86 | 3 | 4 | 315 | 2 | 300 | 5.56e-147 | 416 |
| MS.gene55853.t1 | AT2G26590 | 67.732 | 313 | 86 | 3 | 4 | 315 | 2 | 300 | 5.56e-147 | 416 |
| MS.gene55853.t1 | AT2G26590 | 67.732 | 313 | 86 | 3 | 4 | 315 | 2 | 300 | 5.56e-147 | 416 |
| MS.gene55853.t1 | AT2G26590 | 66.134 | 313 | 87 | 4 | 4 | 315 | 2 | 296 | 1.02e-140 | 399 |
Find 70 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTCACTAGAGGGAAAA+AGG | 0.228102 | 4.3:+3897937 | MS.gene55853:CDS |
| ATCTTCTGGTCCAGTTAAAT+TGG | 0.244685 | 4.3:+3901750 | MS.gene55853:CDS |
| TAACATTACCTCTGGTAAAT+AGG | 0.276133 | 4.3:-3902301 | None:intergenic |
| CAGATAGATTTGTCCCAGTT+TGG | 0.317934 | 4.3:+3902567 | MS.gene55853:CDS |
| ATGACAGAAAGTTCTTCTTC+TGG | 0.336325 | 4.3:+3900062 | MS.gene55853:CDS |
| TACTTGGATCAATTCCAAAC+TGG | 0.345350 | 4.3:-3902581 | None:intergenic |
| TGGAGATCTGCCAATTTAAC+TGG | 0.349597 | 4.3:-3901760 | None:intergenic |
| ACTAGCGATGTAACATCTTC+TGG | 0.352930 | 4.3:+3901736 | MS.gene55853:CDS |
| GAGATTATTACCTGGATTGC+AGG | 0.356564 | 4.3:-3897665 | None:intergenic |
| GGCTACTTGGATTCATCCAT+TGG | 0.381548 | 4.3:-3903143 | None:intergenic |
| TGATCTGATATTGCCATTGA+TGG | 0.395309 | 4.3:+3902248 | MS.gene55853:CDS |
| ACTAGAAACTTACATTTACT+TGG | 0.408411 | 4.3:-3902597 | None:intergenic |
| GATTAGGTTAATCAAACATC+TGG | 0.417400 | 4.3:+3900010 | MS.gene55853:intron |
| GATTACCTCAACAGACCATT+AGG | 0.418595 | 4.3:+3900237 | MS.gene55853:CDS |
| ACGAGTCCTTTGCGTGCATC+AGG | 0.422741 | 4.3:-3897966 | None:intergenic |
| GGAATCTAGGCAAGATGATC+AGG | 0.427826 | 4.3:+3903097 | MS.gene55853:CDS |
| TCTCCAAGTCTGAGGAATCT+AGG | 0.438245 | 4.3:+3903084 | MS.gene55853:CDS |
| AAGTAGCCTGCCAGGCTACT+TGG | 0.438982 | 4.3:-3903156 | None:intergenic |
| GTTGCATCCACACCAAAGTT+CGG | 0.439990 | 4.3:-3901715 | None:intergenic |
| CAATGTTGCTCAATATTCTC+TGG | 0.443937 | 4.3:-3901780 | None:intergenic |
| TTGCATCCACACCAAAGTTC+GGG | 0.455855 | 4.3:-3901714 | None:intergenic |
| TCGCTGCAGGTACTTCGAAC+AGG | 0.457627 | 4.3:+3902543 | MS.gene55853:intron |
| GCTACTTGGATTCATCCATT+GGG | 0.458064 | 4.3:-3903142 | None:intergenic |
| AAAGTTCTTCTTCTGGATGC+AGG | 0.461672 | 4.3:+3900069 | MS.gene55853:CDS |
| GCCAAGTGATTACCTTCGTC+AGG | 0.468536 | 4.3:-3901915 | None:intergenic |
| ATCAATGGCAATATCAGATC+AGG | 0.469632 | 4.3:-3902246 | None:intergenic |
| AAGGACTCGTTCGCATTGCT+AGG | 0.470556 | 4.3:+3897979 | MS.gene55853:CDS |
| TTGGTCTCCAGAAGATATAT+TGG | 0.495383 | 4.3:+3902396 | MS.gene55853:CDS |
| AACAACTCCAATATATCTTC+TGG | 0.501293 | 4.3:-3902403 | None:intergenic |
| AATGGTAACGTCTCCATCAA+TGG | 0.501612 | 4.3:-3902261 | None:intergenic |
| ATTCTATGATGTAGGGTACT+TGG | 0.504079 | 4.3:+3902377 | MS.gene55853:intron |
| TTGCCTAGATTCCTCAGACT+TGG | 0.504515 | 4.3:-3903087 | None:intergenic |
| GCTTGAAGTTTCTGAAGATA+CGG | 0.509208 | 4.3:+3901479 | MS.gene55853:CDS |
| GTTGGAAAGAGCTGCAAACT+TGG | 0.509813 | 4.3:+3901687 | MS.gene55853:intron |
| AACTTGGTTGTCCCGAACTT+TGG | 0.511711 | 4.3:+3901703 | MS.gene55853:CDS |
| TTCTCACTAACAGAGCTCCT+TGG | 0.514456 | 4.3:+3901429 | MS.gene55853:intron |
| CTATTGACAGGAAACTCTCC+TGG | 0.515048 | 4.3:+3897899 | MS.gene55853:intron |
| CAGAGAATATTGAGCAACAT+TGG | 0.515670 | 4.3:+3901781 | MS.gene55853:CDS |
| AGCAACATTGGACCTGCTGC+AGG | 0.516938 | 4.3:+3901793 | MS.gene55853:CDS |
| ATTGATGGAGACGTTACCAT+TGG | 0.528804 | 4.3:+3902263 | MS.gene55853:CDS |
| ACTTGGATCAATTCCAAACT+GGG | 0.539991 | 4.3:-3902580 | None:intergenic |
| GAAGCTAGACGCTGCTCCAA+TGG | 0.546492 | 4.3:-3902279 | None:intergenic |
| ATCTCAATCTTGTACCCCAA+TGG | 0.549644 | 4.3:+3903127 | MS.gene55853:CDS |
| GGTTAATCAAACATCTGGAA+GGG | 0.549885 | 4.3:+3900015 | MS.gene55853:intron |
| TTCAGAAACTTCAAGCGGAA+GGG | 0.552715 | 4.3:-3901472 | None:intergenic |
| TCTACTTGCTGACGGAAAGG+TGG | 0.554317 | 4.3:-3902433 | None:intergenic |
| GATTGCAGGAAAAGCGTCGA+TGG | 0.560072 | 4.3:-3897651 | None:intergenic |
| TGTAACTTATTACCTGCAGC+AGG | 0.562977 | 4.3:-3901805 | None:intergenic |
| CTACTTGCTGACGGAAAGGT+GGG | 0.563809 | 4.3:-3902432 | None:intergenic |
| GAATCTACTTGCTGACGGAA+AGG | 0.566905 | 4.3:-3902436 | None:intergenic |
| CTTCAGAAACTTCAAGCGGA+AGG | 0.572912 | 4.3:-3901473 | None:intergenic |
| TCAAGCGGAAGGGATACATC+AGG | 0.576564 | 4.3:-3901462 | None:intergenic |
| ACTCTCCTGGAGTTTCGTGC+TGG | 0.579564 | 4.3:+3897912 | MS.gene55853:CDS |
| TAAAAGAATCTACTTGCTGA+CGG | 0.580735 | 4.3:-3902441 | None:intergenic |
| AGGTTAATCAAACATCTGGA+AGG | 0.590396 | 4.3:+3900014 | MS.gene55853:intron |
| TGCTGGTAAAATGTCACTAG+AGG | 0.593216 | 4.3:+3897929 | MS.gene55853:CDS |
| ATTTAATTAGGCTTTGAACT+CGG | 0.598507 | 4.3:+3902210 | MS.gene55853:intron |
| AGGACTCGTTCGCATTGCTA+GGG | 0.600668 | 4.3:+3897980 | MS.gene55853:CDS |
| GCTGGTAAAATGTCACTAGA+GGG | 0.629870 | 4.3:+3897930 | MS.gene55853:CDS |
| GTAGTTCCTGATGCACGCAA+AGG | 0.629923 | 4.3:+3897960 | MS.gene55853:CDS |
| GGTTGTCCCGAACTTTGGTG+TGG | 0.640547 | 4.3:+3901708 | MS.gene55853:CDS |
| TTGAAGATGACATCTCATCC+AGG | 0.641031 | 4.3:+3901502 | MS.gene55853:CDS |
| TCTAGCTTCCTATTTACCAG+AGG | 0.641283 | 4.3:+3902293 | MS.gene55853:CDS |
| GGATTCTGTCTCCAAGTCTG+AGG | 0.641302 | 4.3:+3903076 | MS.gene55853:CDS |
| CTACTTGGATTCATCCATTG+GGG | 0.648704 | 4.3:-3903141 | None:intergenic |
| ACTTACCTAATGGTCTGTTG+AGG | 0.651428 | 4.3:-3900242 | None:intergenic |
| AGCATTCTTGATCCTGACGA+AGG | 0.660593 | 4.3:+3901903 | MS.gene55853:CDS |
| CATCAGGTTCTTCTTCACCA+AGG | 0.686746 | 4.3:-3901446 | None:intergenic |
| GTATCTTCAGAAACTTCAAG+CGG | 0.690380 | 4.3:-3901477 | None:intergenic |
| TCAGATAATATTTCCGAACG+AGG | 0.696593 | 4.3:+3899895 | MS.gene55853:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGTAAATGAAATTTATA+GGG | + | chr4.3:3898680-3898699 | MS.gene55853:intron | 10.0% |
| !! | TAAAAATAAACAAAAAATGA+AGG | + | chr4.3:3902923-3902942 | MS.gene55853:intron | 10.0% |
| !! | TATTAGTAAATGAAATTTAT+AGG | + | chr4.3:3898679-3898698 | MS.gene55853:intron | 10.0% |
| !! | TATTTACAAGATTATAAATA+AGG | + | chr4.3:3900440-3900459 | MS.gene55853:intron | 10.0% |
| !! | TTATAAAAAATATTAGCAAA+AGG | + | chr4.3:3902157-3902176 | MS.gene55853:intron | 10.0% |
| !!! | TTGTAAATAATTTATTTTCA+TGG | + | chr4.3:3900973-3900992 | MS.gene55853:intron | 10.0% |
| !! | AACAGCAATTATATATATTT+GGG | - | chr4.3:3898241-3898260 | None:intergenic | 15.0% |
| !! | ATCAAAATCAATAACAATTA+AGG | - | chr4.3:3902645-3902664 | None:intergenic | 15.0% |
| !! | ATGAAATGTAAAAAAGAAAA+AGG | - | chr4.3:3902491-3902510 | None:intergenic | 15.0% |
| !! | TGAAATGTAAAAAAGAAAAA+GGG | - | chr4.3:3902490-3902509 | None:intergenic | 15.0% |
| !! | TTAGTAAATGAAATTTATAG+GGG | + | chr4.3:3898681-3898700 | MS.gene55853:intron | 15.0% |
| !!! | ATTTGAGACAAAAAATTAAT+CGG | - | chr4.3:3898382-3898401 | None:intergenic | 15.0% |
| !! | AAAATCAATAACAATTAAGG+TGG | - | chr4.3:3902642-3902661 | None:intergenic | 20.0% |
| !! | AGATCTAAAGATTTATAAGT+TGG | + | chr4.3:3899628-3899647 | MS.gene55853:intron | 20.0% |
| !! | ATGAATCAAAACCAAATAAA+AGG | - | chr4.3:3901302-3901321 | None:intergenic | 20.0% |
| !! | ATTTCATTTCAGAAGATATT+CGG | + | chr4.3:3902504-3902523 | MS.gene55853:intron | 20.0% |
| !! | CATATCATCAAAAAAGTAAT+AGG | - | chr4.3:3901878-3901897 | None:intergenic | 20.0% |
| !! | CCTAAAAAAAAAAATTGACA+TGG | - | chr4.3:3900616-3900635 | None:intergenic | 20.0% |
| !! | CTATGAAAAATAAACACTAA+AGG | - | chr4.3:3898715-3898734 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAGATAACGT+GGG | + | chr4.3:3898807-3898826 | MS.gene55853:intron | 20.0% |
| !! | GAACAGCAATTATATATATT+TGG | - | chr4.3:3898242-3898261 | None:intergenic | 20.0% |
| !! | TATATATTTGGGAAGAAAAA+AGG | - | chr4.3:3898230-3898249 | None:intergenic | 20.0% |
| !! | TTCGTTAAAAAATGCATATT+AGG | + | chr4.3:3901203-3901222 | MS.gene55853:intron | 20.0% |
| !!! | AAAGTATTTCCATTTGATTA+TGG | + | chr4.3:3901088-3901107 | MS.gene55853:intron | 20.0% |
| !!! | AGATTCTTTTACTTATGTAA+AGG | + | chr4.3:3902453-3902472 | MS.gene55853:intron | 20.0% |
| !!! | CCATGTCAATTTTTTTTTTT+AGG | + | chr4.3:3900613-3900632 | MS.gene55853:intron | 20.0% |
| !!! | CTAAAAGTTTGTTTTTTTGT+TGG | + | chr4.3:3901669-3901688 | MS.gene55853:intron | 20.0% |
| !!! | TAAAAAGTATTGTCAAATAG+TGG | + | chr4.3:3900863-3900882 | MS.gene55853:intron | 20.0% |
| !!! | TTATAAGTTGGATAGAAATA+TGG | + | chr4.3:3899640-3899659 | MS.gene55853:intron | 20.0% |
| !!! | TTTGGATATTCAAATGTTTT+CGG | + | chr4.3:3901532-3901551 | MS.gene55853:intron | 20.0% |
| !!! | TTTTTTATGCTATGATTGAT+CGG | + | chr4.3:3897866-3897885 | MS.gene55853:intron | 20.0% |
| ! | AAGATAAAGAGATTATTACC+TGG | - | chr4.3:3897676-3897695 | None:intergenic | 25.0% |
| ! | AATGTAAAAAAGAAAAAGGG+AGG | - | chr4.3:3902487-3902506 | None:intergenic | 25.0% |
| ! | ACCAAAGAAAACTACTATAT+GGG | - | chr4.3:3898420-3898439 | None:intergenic | 25.0% |
| ! | ACCTATAGTAGAAAATATTG+TGG | + | chr4.3:3899560-3899579 | MS.gene55853:intron | 25.0% |
| ! | ACTAGAAACTTACATTTACT+TGG | - | chr4.3:3902600-3902619 | None:intergenic | 25.0% |
| ! | AGCATCAAAATAAATACAGA+AGG | - | chr4.3:3899852-3899871 | None:intergenic | 25.0% |
| ! | AGCTTAATAGCTAACAAATA+TGG | + | chr4.3:3899026-3899045 | MS.gene55853:intron | 25.0% |
| ! | AGGATTATAAATGACAACAT+TGG | + | chr4.3:3899521-3899540 | MS.gene55853:intron | 25.0% |
| ! | ATCATCAAGTCAAAATACTT+AGG | - | chr4.3:3900126-3900145 | None:intergenic | 25.0% |
| ! | ATGTAAAAAAGAAAAAGGGA+GGG | - | chr4.3:3902486-3902505 | None:intergenic | 25.0% |
| ! | ATGTAGTATTCTATGATGTA+GGG | + | chr4.3:3902370-3902389 | MS.gene55853:intron | 25.0% |
| ! | CAAATGGAAAATGTGAATAA+AGG | - | chr4.3:3902746-3902765 | None:intergenic | 25.0% |
| ! | CCACGTTATCTTTATAAATA+AGG | - | chr4.3:3898809-3898828 | None:intergenic | 25.0% |
| ! | CGTAACCATACTAATATATT+TGG | - | chr4.3:3901235-3901254 | None:intergenic | 25.0% |
| ! | GAAAGCCAAATATATTAGTA+TGG | + | chr4.3:3901227-3901246 | MS.gene55853:intron | 25.0% |
| ! | GGAACAACTAATATTTCAAT+TGG | - | chr4.3:3899831-3899850 | None:intergenic | 25.0% |
| ! | TAACCAAACAACTTAGTATT+GGG | + | chr4.3:3900686-3900705 | MS.gene55853:intron | 25.0% |
| ! | TAGAAAATATTGTGGAAACT+AGG | + | chr4.3:3899568-3899587 | MS.gene55853:intron | 25.0% |
| ! | TAGAATTTGTATAGAATAGC+TGG | + | chr4.3:3898355-3898374 | MS.gene55853:intron | 25.0% |
| ! | TAGATTCCTATACACAATAA+AGG | - | chr4.3:3900179-3900198 | None:intergenic | 25.0% |
| ! | TATCTATTTATTTACCTGAC+TGG | + | chr4.3:3901643-3901662 | MS.gene55853:intron | 25.0% |
| ! | TCATCAAGTCAAAATACTTA+GGG | - | chr4.3:3900125-3900144 | None:intergenic | 25.0% |
| ! | TGCTTTACTCTTAATATCTT+GGG | + | chr4.3:3899939-3899958 | MS.gene55853:intron | 25.0% |
| ! | TTAATTAATGCAAAGAAGCT+AGG | + | chr4.3:3900588-3900607 | MS.gene55853:intron | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | + | chr4.3:3899240-3899259 | MS.gene55853:intron | 25.0% |
| ! | TTATCATTGTGACATACTAA+AGG | - | chr4.3:3898897-3898916 | None:intergenic | 25.0% |
| ! | TTCAACAATGCAAATTCAAA+GGG | - | chr4.3:3898063-3898082 | None:intergenic | 25.0% |
| !! | ATAATTGCTGTTCATTTGAA+TGG | + | chr4.3:3898249-3898268 | MS.gene55853:intron | 25.0% |
| !! | CAGTTTTCTTGCATTTAATT+AGG | + | chr4.3:3902198-3902217 | MS.gene55853:intron | 25.0% |
| !! | CCTTATTTATAAAGATAACG+TGG | + | chr4.3:3898806-3898825 | MS.gene55853:intron | 25.0% |
| !! | CTTTATTCACATTTTCCATT+TGG | + | chr4.3:3902744-3902763 | MS.gene55853:intron | 25.0% |
| !! | TCCACAATATTTTCTACTAT+AGG | - | chr4.3:3899564-3899583 | None:intergenic | 25.0% |
| !!! | ATTTAATTAGGCTTTGAACT+CGG | + | chr4.3:3902210-3902229 | MS.gene55853:intron | 25.0% |
| !!! | CGCTTAATTTATTTTCTTGT+TGG | - | chr4.3:3899451-3899470 | None:intergenic | 25.0% |
| !!! | TACTGAAACAATAGCTTTAT+AGG | - | chr4.3:3898941-3898960 | None:intergenic | 25.0% |
| !!! | TCTTGGGTATGATTATTTTA+TGG | + | chr4.3:3899955-3899974 | MS.gene55853:intron | 25.0% |
| !!! | TGCATTTTTTAACGAAATCT+AGG | - | chr4.3:3901199-3901218 | None:intergenic | 25.0% |
| AACAACTCCAATATATCTTC+TGG | - | chr4.3:3902406-3902425 | None:intergenic | 30.0% | |
| AAGTCAAAATAATAGAGGTC+AGG | - | chr4.3:3899770-3899789 | None:intergenic | 30.0% | |
| AATATTATCTGATCCTGTGT+TGG | - | chr4.3:3899887-3899906 | None:intergenic | 30.0% | |
| AATGAAGGAAAAAAGATACG+AGG | + | chr4.3:3902938-3902957 | MS.gene55853:intron | 30.0% | |
| ACAAGCAATGTTGTCAATAA+CGG | - | chr4.3:3900957-3900976 | None:intergenic | 30.0% | |
| ACAGTCTTAATAGATAGCAA+GGG | - | chr4.3:3901953-3901972 | None:intergenic | 30.0% | |
| AGATATTAAGAGTAAAGCAG+TGG | - | chr4.3:3899938-3899957 | None:intergenic | 30.0% | |
| AGATCTCAACACAGTTAAAA+GGG | - | chr4.3:3901853-3901872 | None:intergenic | 30.0% | |
| AGCACTTTAATGACAGAATA+TGG | - | chr4.3:3901119-3901138 | None:intergenic | 30.0% | |
| AGCTTACAATTCAAAGCAAA+AGG | - | chr4.3:3900274-3900293 | None:intergenic | 30.0% | |
| ATATTCTGACTTCTGATTCT+TGG | + | chr4.3:3899984-3900003 | MS.gene55853:intron | 30.0% | |
| ATCTTACTCTTACACATATG+TGG | + | chr4.3:3901163-3901182 | MS.gene55853:intron | 30.0% | |
| ATGGAAAATGTGAATAAAGG+TGG | - | chr4.3:3902743-3902762 | None:intergenic | 30.0% | |
| CAATTCTGCTTACTTAAGAA+TGG | + | chr4.3:3900338-3900357 | MS.gene55853:intron | 30.0% | |
| CACTTTAATGACAGAATATG+GGG | - | chr4.3:3901117-3901136 | None:intergenic | 30.0% | |
| CATGTAGTATTCTATGATGT+AGG | + | chr4.3:3902369-3902388 | MS.gene55853:intron | 30.0% | |
| CTAACCAAACAACTTAGTAT+TGG | + | chr4.3:3900685-3900704 | MS.gene55853:intron | 30.0% | |
| CTACATGAATCACTAAACAA+AGG | - | chr4.3:3902356-3902375 | None:intergenic | 30.0% | |
| CTATATGGGTCAAATAGAAT+TGG | + | chr4.3:3898608-3898627 | MS.gene55853:intron | 30.0% | |
| CTGCTTTACTCTTAATATCT+TGG | + | chr4.3:3899938-3899957 | MS.gene55853:intron | 30.0% | |
| CTTCAACAATGCAAATTCAA+AGG | - | chr4.3:3898064-3898083 | None:intergenic | 30.0% | |
| GACCAAAGAAAACTACTATA+TGG | - | chr4.3:3898421-3898440 | None:intergenic | 30.0% | |
| GATTAGGTTAATCAAACATC+TGG | + | chr4.3:3900010-3900029 | MS.gene55853:intron | 30.0% | |
| GATTATATATTTATCGCTGC+AGG | + | chr4.3:3902530-3902549 | MS.gene55853:intron | 30.0% | |
| GCACTTTAATGACAGAATAT+GGG | - | chr4.3:3901118-3901137 | None:intergenic | 30.0% | |
| GTATTTCCATTTGATTATGG+TGG | + | chr4.3:3901091-3901110 | MS.gene55853:intron | 30.0% | |
| GTGGTAAAATTAGACAAGAT+AGG | + | chr4.3:3899501-3899520 | MS.gene55853:intron | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | + | chr4.3:3899239-3899258 | MS.gene55853:intron | 30.0% | |
| TAAACCAAGTTAACCTTTGT+AGG | + | chr4.3:3899139-3899158 | MS.gene55853:intron | 30.0% | |
| TAAACCATGGAATTTAAGCT+GGG | + | chr4.3:3899305-3899324 | MS.gene55853:intron | 30.0% | |
| TAACATTACCTCTGGTAAAT+AGG | - | chr4.3:3902304-3902323 | None:intergenic | 30.0% | |
| TAGGCAAATAGCTAAATGTA+TGG | + | chr4.3:3901351-3901370 | MS.gene55853:intron | 30.0% | |
| TATCTATTAAGACTGTGTGA+TGG | + | chr4.3:3901957-3901976 | MS.gene55853:intron | 30.0% | |
| TATTTAAACCGTGTAACTTG+TGG | - | chr4.3:3899236-3899255 | None:intergenic | 30.0% | |
| TGCACATTGTTGTCAAATAA+CGG | + | chr4.3:3900786-3900805 | MS.gene55853:intron | 30.0% | |
| TGGAAAATGTGAATAAAGGT+GGG | - | chr4.3:3902742-3902761 | None:intergenic | 30.0% | |
| TGGTATTTGATAGAACACTA+TGG | + | chr4.3:3899660-3899679 | MS.gene55853:intron | 30.0% | |
| TGTGTAAGAGTAAGATCATA+TGG | - | chr4.3:3901159-3901178 | None:intergenic | 30.0% | |
| TGTGTGTCTATTATGGATAT+TGG | + | chr4.3:3898777-3898796 | MS.gene55853:intron | 30.0% | |
| TGTTTCAGTATATTACTTGC+AGG | + | chr4.3:3898951-3898970 | MS.gene55853:intron | 30.0% | |
| TTCAAAGTTTCATGTCTTGT+AGG | + | chr4.3:3902860-3902879 | MS.gene55853:intron | 30.0% | |
| TTGCCAAGTCAAAATAATAG+AGG | - | chr4.3:3899775-3899794 | None:intergenic | 30.0% | |
| TTGCTAATGAGTACAATACT+TGG | + | chr4.3:3902832-3902851 | MS.gene55853:intron | 30.0% | |
| ! | ACAAATTTGCTTTCTAGTAC+TGG | + | chr4.3:3902790-3902809 | MS.gene55853:intron | 30.0% |
| ! | CACATTTTCCATTTGGTATA+CGG | + | chr4.3:3902751-3902770 | MS.gene55853:intron | 30.0% |
| ! | TAAAAGAATCTACTTGCTGA+CGG | - | chr4.3:3902444-3902463 | None:intergenic | 30.0% |
| ! | TCCCATATAGTAGTTTTCTT+TGG | + | chr4.3:3898416-3898435 | MS.gene55853:intron | 30.0% |
| ! | TCTACTATGGTGTTTCTAAT+GGG | + | chr4.3:3898494-3898513 | MS.gene55853:intron | 30.0% |
| ! | TTCAAGTCAAATTTTAAGCC+AGG | + | chr4.3:3897811-3897830 | MS.gene55853:intron | 30.0% |
| ! | TTCTGATTCTTGGTTTGATT+AGG | + | chr4.3:3899994-3900013 | MS.gene55853:intron | 30.0% |
| !! | AGAACTTGATTTGCAAAAAC+AGG | + | chr4.3:3898328-3898347 | MS.gene55853:intron | 30.0% |
| !! | ATGACAGAAAATTTTGATGC+TGG | + | chr4.3:3901273-3901292 | MS.gene55853:intron | 30.0% |
| !! | ATTTTCTGAGAATTCCTACT+TGG | + | chr4.3:3902964-3902983 | MS.gene55853:intron | 30.0% |
| !! | TGGCTTAAAATTTGACTTGA+AGG | - | chr4.3:3897812-3897831 | None:intergenic | 30.0% |
| !!! | ATGGTTTTGAACAACCATTT+AGG | + | chr4.3:3900755-3900774 | MS.gene55853:intron | 30.0% |
| !!! | TGACCTCTATTATTTTGACT+TGG | + | chr4.3:3899769-3899788 | MS.gene55853:intron | 30.0% |
| !!! | TTGTCTTTTCTAGAACAAAC+TGG | - | chr4.3:3898833-3898852 | None:intergenic | 30.0% |
| AAAACTGTATCCCATGATGA+GGG | + | chr4.3:3902091-3902110 | MS.gene55853:intron | 35.0% | |
| AAAATACTTAGGGAGACAAG+TGG | - | chr4.3:3900115-3900134 | None:intergenic | 35.0% | |
| AAAATGTGAATAAAGGTGGG+AGG | - | chr4.3:3902739-3902758 | None:intergenic | 35.0% | |
| AAATGTCACTAGAGGGAAAA+AGG | + | chr4.3:3897937-3897956 | MS.gene55853:CDS | 35.0% | |
| AAGGAGAGATACTTACCTAA+TGG | - | chr4.3:3900255-3900274 | None:intergenic | 35.0% | |
| AATGTCACTAGAGGGAAAAA+GGG | + | chr4.3:3897938-3897957 | MS.gene55853:CDS | 35.0% | |
| ACTGTCTCGTACAACATTAT+CGG | - | chr4.3:3899410-3899429 | None:intergenic | 35.0% | |
| ACTTGGATCAATTCCAAACT+GGG | - | chr4.3:3902583-3902602 | None:intergenic | 35.0% | |
| AGAGAGAGAGAGAGTTAATA+AGG | - | chr4.3:3898752-3898771 | None:intergenic | 35.0% | |
| AGATATGCAATGCACTAGTA+AGG | - | chr4.3:3901628-3901647 | None:intergenic | 35.0% | |
| AGCTGCTATGACATAAAAGA+TGG | - | chr4.3:3898557-3898576 | None:intergenic | 35.0% | |
| AGGCTTACACGTTAATAGAA+AGG | - | chr4.3:3900298-3900317 | None:intergenic | 35.0% | |
| AGGTTAATCAAACATCTGGA+AGG | + | chr4.3:3900014-3900033 | MS.gene55853:intron | 35.0% | |
| ATAGAAGGAGATGTAAACCA+TGG | + | chr4.3:3899292-3899311 | MS.gene55853:intron | 35.0% | |
| ATAGAGTGAGTGTGTTTCAA+AGG | - | chr4.3:3898592-3898611 | None:intergenic | 35.0% | |
| ATATTGTGGAAACTAGGCTT+AGG | + | chr4.3:3899574-3899593 | MS.gene55853:intron | 35.0% | |
| ATCAATGGCAATATCAGATC+AGG | - | chr4.3:3902249-3902268 | None:intergenic | 35.0% | |
| ATCATGTCAATAAGCCAAGT+AGG | - | chr4.3:3902981-3903000 | None:intergenic | 35.0% | |
| ATCTTCTGGTCCAGTTAAAT+TGG | + | chr4.3:3901750-3901769 | MS.gene55853:CDS | 35.0% | |
| ATGACAGAAAGTTCTTCTTC+TGG | + | chr4.3:3900062-3900081 | MS.gene55853:CDS | 35.0% | |
| ATGGTTGTTCAAAACCATAC+AGG | - | chr4.3:3900753-3900772 | None:intergenic | 35.0% | |
| ATTAGTATGGTTACGTACAC+AGG | + | chr4.3:3901240-3901259 | MS.gene55853:intron | 35.0% | |
| CAAAGATGAAGATGTTGAGT+TGG | + | chr4.3:3899474-3899493 | MS.gene55853:intron | 35.0% | |
| CAATGTTGCTCAATATTCTC+TGG | - | chr4.3:3901783-3901802 | None:intergenic | 35.0% | |
| CACAGTCTTAATAGATAGCA+AGG | - | chr4.3:3901954-3901973 | None:intergenic | 35.0% | |
| CAGAGAATATTGAGCAACAT+TGG | + | chr4.3:3901781-3901800 | MS.gene55853:CDS | 35.0% | |
| CAGATCTCAACACAGTTAAA+AGG | - | chr4.3:3901854-3901873 | None:intergenic | 35.0% | |
| CATTCCATAGTGCTAAACAA+CGG | + | chr4.3:3899265-3899284 | MS.gene55853:intron | 35.0% | |
| CATTGGTATAACATTACCTC+TGG | - | chr4.3:3902312-3902331 | None:intergenic | 35.0% | |
| CCTATACACAATAAAGGTTC+AGG | - | chr4.3:3900173-3900192 | None:intergenic | 35.0% | |
| CCTGAACCTTTATTGTGTAT+AGG | + | chr4.3:3900170-3900189 | MS.gene55853:intron | 35.0% | |
| CTAAACAACGGAGAAATAGA+AGG | + | chr4.3:3899277-3899296 | MS.gene55853:intron | 35.0% | |
| GAAACACACTCACTCTATAT+GGG | + | chr4.3:3898594-3898613 | MS.gene55853:intron | 35.0% | |
| GAATATCCAAACTAAGTACC+TGG | - | chr4.3:3901523-3901542 | None:intergenic | 35.0% | |
| GATATGCAATGCACTAGTAA+GGG | - | chr4.3:3901627-3901646 | None:intergenic | 35.0% | |
| GGTTAATCAAACATCTGGAA+GGG | + | chr4.3:3900015-3900034 | MS.gene55853:intron | 35.0% | |
| GTAAACCATGGAATTTAAGC+TGG | + | chr4.3:3899304-3899323 | MS.gene55853:intron | 35.0% | |
| GTACCCAATACTAAGTTGTT+TGG | - | chr4.3:3900692-3900711 | None:intergenic | 35.0% | |
| GTATCCTACAAAGGTTAACT+TGG | - | chr4.3:3899146-3899165 | None:intergenic | 35.0% | |
| GTATCTTCAGAAACTTCAAG+CGG | - | chr4.3:3901480-3901499 | None:intergenic | 35.0% | |
| GTCATATACCACAAGTTACA+CGG | + | chr4.3:3899225-3899244 | MS.gene55853:intron | 35.0% | |
| GTTAGAAGTGAACAAGTGTT+GGG | + | chr4.3:3899051-3899070 | MS.gene55853:intron | 35.0% | |
| TAAAAGATGGTACTCGTCTT+AGG | - | chr4.3:3898544-3898563 | None:intergenic | 35.0% | |
| TACTTGGATCAATTCCAAAC+TGG | - | chr4.3:3902584-3902603 | None:intergenic | 35.0% | |
| TAGAGTGAGTGTGTTTCAAA+GGG | - | chr4.3:3898591-3898610 | None:intergenic | 35.0% | |
| TATATTACTTGCAGGACCTA+TGG | + | chr4.3:3898959-3898978 | MS.gene55853:intron | 35.0% | |
| TATGCCTTCTGTGTGAATTT+AGG | - | chr4.3:3899119-3899138 | None:intergenic | 35.0% | |
| TCAAAGGGATGTTAAAAGCA+AGG | - | chr4.3:3898048-3898067 | None:intergenic | 35.0% | |
| TCAGATAATATTTCCGAACG+AGG | + | chr4.3:3899895-3899914 | MS.gene55853:CDS | 35.0% | |
| TCATTGTGACATACTAAAGG+AGG | - | chr4.3:3898894-3898913 | None:intergenic | 35.0% | |
| TCTTAAGTAAGCAGAATTGC+AGG | - | chr4.3:3900337-3900356 | None:intergenic | 35.0% | |
| TGAAACACACTCACTCTATA+TGG | + | chr4.3:3898593-3898612 | MS.gene55853:intron | 35.0% | |
| TGACTCATCGTAGAATTGAT+AGG | + | chr4.3:3898301-3898320 | MS.gene55853:intron | 35.0% | |
| TGATCTGATATTGCCATTGA+TGG | + | chr4.3:3902248-3902267 | MS.gene55853:CDS | 35.0% | |
| TGGTTGTTCAAAACCATACA+GGG | - | chr4.3:3900752-3900771 | None:intergenic | 35.0% | |
| TGTACCTAAATTCACACAGA+AGG | + | chr4.3:3899112-3899131 | MS.gene55853:intron | 35.0% | |
| TGTGCACAAGTATTCCTAAA+TGG | - | chr4.3:3900772-3900791 | None:intergenic | 35.0% | |
| TGTGTTTCAAAGGGTAAGTT+GGG | - | chr4.3:3898582-3898601 | None:intergenic | 35.0% | |
| TGTTAGAAGTGAACAAGTGT+TGG | + | chr4.3:3899050-3899069 | MS.gene55853:intron | 35.0% | |
| TGTTTGAACGTATCCTACAA+AGG | - | chr4.3:3899155-3899174 | None:intergenic | 35.0% | |
| TTGGTCTCCAGAAGATATAT+TGG | + | chr4.3:3902396-3902415 | MS.gene55853:CDS | 35.0% | |
| TTTCATGTCTTGTAGGTTTC+AGG | + | chr4.3:3902867-3902886 | MS.gene55853:intron | 35.0% | |
| ! | AATTTTAAGCCAGGAAGATC+TGG | + | chr4.3:3897820-3897839 | MS.gene55853:intron | 35.0% |
| ! | ATTCTATGATGTAGGGTACT+TGG | + | chr4.3:3902377-3902396 | MS.gene55853:intron | 35.0% |
| ! | ATTTTAAGCCAGGAAGATCT+GGG | + | chr4.3:3897821-3897840 | MS.gene55853:intron | 35.0% |
| ! | CTCTACTATGGTGTTTCTAA+TGG | + | chr4.3:3898493-3898512 | MS.gene55853:intron | 35.0% |
| ! | GATGCTGGTAACCTTTTATT+TGG | + | chr4.3:3901288-3901307 | MS.gene55853:intron | 35.0% |
| ! | GCTTGAAGTTTCTGAAGATA+CGG | + | chr4.3:3901479-3901498 | MS.gene55853:CDS | 35.0% |
| !! | ATTTGACTTGAAGGTTACAG+TGG | - | chr4.3:3897803-3897822 | None:intergenic | 35.0% |
| !! | GGTTTGTTATGTCTATTGAC+AGG | + | chr4.3:3897887-3897906 | MS.gene55853:intron | 35.0% |
| !! | GTTCACAGTTTTGTCTTTTC+TGG | + | chr4.3:3903043-3903062 | MS.gene55853:CDS | 35.0% |
| !! | TTTGCCTATGTCACTTTGAA+AGG | - | chr4.3:3901339-3901358 | None:intergenic | 35.0% |
| !!! | AAGTGGTTGTTTTTGTCTCA+GGG | + | chr4.3:3898142-3898161 | MS.gene55853:intron | 35.0% |
| AAACTGTATCCCATGATGAG+GGG | + | chr4.3:3902092-3902111 | MS.gene55853:intron | 40.0% | |
| AAAGTTCTTCTTCTGGATGC+AGG | + | chr4.3:3900069-3900088 | MS.gene55853:CDS | 40.0% | |
| AAGCTGGGTGGTTAAAATAG+AGG | + | chr4.3:3899320-3899339 | MS.gene55853:intron | 40.0% | |
| AATGTTGTCAATAACGGTCG+TGG | - | chr4.3:3900951-3900970 | None:intergenic | 40.0% | |
| ACTAGCGATGTAACATCTTC+TGG | + | chr4.3:3901736-3901755 | MS.gene55853:CDS | 40.0% | |
| ACTTACCTAATGGTCTGTTG+AGG | - | chr4.3:3900245-3900264 | None:intergenic | 40.0% | |
| AGATGGAGGAAATGTTGGAT+CGG | - | chr4.3:3898467-3898486 | None:intergenic | 40.0% | |
| ATACTAAAGGAGGAAAGTGG+AGG | - | chr4.3:3898884-3898903 | None:intergenic | 40.0% | |
| ATACTAATGCCCCTCATCAT+GGG | - | chr4.3:3902104-3902123 | None:intergenic | 40.0% | |
| ATCTCAATCTTGTACCCCAA+TGG | + | chr4.3:3903127-3903146 | MS.gene55853:CDS | 40.0% | |
| ATGACAACATTGGAGAGAGT+TGG | + | chr4.3:3899531-3899550 | MS.gene55853:intron | 40.0% | |
| ATGTTGTCAATAACGGTCGT+GGG | - | chr4.3:3900950-3900969 | None:intergenic | 40.0% | |
| ATTGATGGAGACGTTACCAT+TGG | + | chr4.3:3902263-3902282 | MS.gene55853:CDS | 40.0% | |
| CAAAACTGTATCCCATGATG+AGG | + | chr4.3:3902090-3902109 | MS.gene55853:intron | 40.0% | |
| CAATGCACTAGTAAGGGATT+TGG | - | chr4.3:3901621-3901640 | None:intergenic | 40.0% | |
| CAGATAGATTTGTCCCAGTT+TGG | + | chr4.3:3902567-3902586 | MS.gene55853:CDS | 40.0% | |
| CCACTTCAACTAAAAACCAG+CGG | - | chr4.3:3898128-3898147 | None:intergenic | 40.0% | |
| CGAAAAGTCAATCGCTACAT+TGG | - | chr4.3:3902329-3902348 | None:intergenic | 40.0% | |
| CGTTGTTTAGCACTATGGAA+TGG | - | chr4.3:3899267-3899286 | None:intergenic | 40.0% | |
| CTACTTGGATTCATCCATTG+GGG | - | chr4.3:3903144-3903163 | None:intergenic | 40.0% | |
| CTCCAATCTAGTGTGTTGTA+GGG | + | chr4.3:3902701-3902720 | MS.gene55853:intron | 40.0% | |
| CTCTCGTTGTGTGTCTATTA+TGG | + | chr4.3:3898770-3898789 | MS.gene55853:intron | 40.0% | |
| CTGTGTGAATTTAGGTACAG+TGG | - | chr4.3:3899111-3899130 | None:intergenic | 40.0% | |
| GACATACTAAAGGAGGAAAG+TGG | - | chr4.3:3898887-3898906 | None:intergenic | 40.0% | |
| GAGATTATTACCTGGATTGC+AGG | - | chr4.3:3897668-3897687 | None:intergenic | 40.0% | |
| GATTACCTCAACAGACCATT+AGG | + | chr4.3:3900237-3900256 | MS.gene55853:CDS | 40.0% | |
| GCAACCTTTCAAAGTGACAT+AGG | + | chr4.3:3901332-3901351 | MS.gene55853:intron | 40.0% | |
| GCATTAGTATGCAGTTTGAC+GGG | + | chr4.3:3902114-3902133 | MS.gene55853:intron | 40.0% | |
| GCTGGTAAAATGTCACTAGA+GGG | + | chr4.3:3897930-3897949 | MS.gene55853:CDS | 40.0% | |
| GGCATTAGTATGCAGTTTGA+CGG | + | chr4.3:3902113-3902132 | MS.gene55853:intron | 40.0% | |
| GTGTGTTTCAAAGGGTAAGT+TGG | - | chr4.3:3898583-3898602 | None:intergenic | 40.0% | |
| GTGTTTCAAAGGGTAAGTTG+GGG | - | chr4.3:3898581-3898600 | None:intergenic | 40.0% | |
| TATCCAGTGCAAGTACATAC+CGG | - | chr4.3:3900725-3900744 | None:intergenic | 40.0% | |
| TCTCATCCAGGTACTTAGTT+TGG | + | chr4.3:3901514-3901533 | MS.gene55853:intron | 40.0% | |
| TCTCCAATCTAGTGTGTTGT+AGG | + | chr4.3:3902700-3902719 | MS.gene55853:intron | 40.0% | |
| TGACAACATTGGAGAGAGTT+GGG | + | chr4.3:3899532-3899551 | MS.gene55853:intron | 40.0% | |
| TGCTCAAAAATAGCCTCGTT+CGG | - | chr4.3:3899911-3899930 | None:intergenic | 40.0% | |
| TGCTGGTAAAATGTCACTAG+AGG | + | chr4.3:3897929-3897948 | MS.gene55853:CDS | 40.0% | |
| TGGAGATCTGCCAATTTAAC+TGG | - | chr4.3:3901763-3901782 | None:intergenic | 40.0% | |
| TGTAACTTATTACCTGCAGC+AGG | - | chr4.3:3901808-3901827 | None:intergenic | 40.0% | |
| TGTTGGATCGGTCAAATAGT+TGG | - | chr4.3:3898455-3898474 | None:intergenic | 40.0% | |
| TTCAGAAACTTCAAGCGGAA+GGG | - | chr4.3:3901475-3901494 | None:intergenic | 40.0% | |
| TTCCAACTTTCACAAAGTGC+AGG | - | chr4.3:3899200-3899219 | None:intergenic | 40.0% | |
| TTCCATTTGGTATACGGTAG+AGG | + | chr4.3:3902757-3902776 | MS.gene55853:intron | 40.0% | |
| TTCCTGCACTTTGTGAAAGT+TGG | + | chr4.3:3899195-3899214 | MS.gene55853:intron | 40.0% | |
| TTCTCCGTTGTTTAGCACTA+TGG | - | chr4.3:3899272-3899291 | None:intergenic | 40.0% | |
| TTGAAGATGACATCTCATCC+AGG | + | chr4.3:3901502-3901521 | MS.gene55853:CDS | 40.0% | |
| ! | AATGGTAACGTCTCCATCAA+TGG | - | chr4.3:3902264-3902283 | None:intergenic | 40.0% |
| ! | AGCGTGTTACTCTTTACTTC+TGG | - | chr4.3:3901399-3901418 | None:intergenic | 40.0% |
| ! | CAAACTTTTAGTGTCCAGTC+AGG | - | chr4.3:3901660-3901679 | None:intergenic | 40.0% |
| ! | CAGTACTTTTGTGTCACATG+AGG | - | chr4.3:3899350-3899369 | None:intergenic | 40.0% |
| ! | TCTAGCTTCCTATTTACCAG+AGG | + | chr4.3:3902293-3902312 | MS.gene55853:CDS | 40.0% |
| ! | TTAGGTGATTCGGAAATGTG+TGG | - | chr4.3:3898526-3898545 | None:intergenic | 40.0% |
| ! | TTTGCTTTCTAGTACTGGAG+TGG | + | chr4.3:3902795-3902814 | MS.gene55853:intron | 40.0% |
| !! | AAAGTACTGCTCAAGCTGAA+TGG | + | chr4.3:3899361-3899380 | MS.gene55853:intron | 40.0% |
| !! | AAGATGTTGAGTTGGATGTG+TGG | + | chr4.3:3899482-3899501 | MS.gene55853:intron | 40.0% |
| !! | CACAGTTTTGTCTTTTCTGG+AGG | + | chr4.3:3903046-3903065 | MS.gene55853:CDS | 40.0% |
| !!! | AGGGACTAGTTCATTTTCAG+TGG | + | chr4.3:3898170-3898189 | MS.gene55853:CDS | 40.0% |
| !!! | CTGATTCTTTGTTTTCCCCT+TGG | + | chr4.3:3903013-3903032 | MS.gene55853:intron | 40.0% |
| !!! | GAAGTGGTTGTTTTTGTCTC+AGG | + | chr4.3:3898141-3898160 | MS.gene55853:intron | 40.0% |
| AAACAGACTCACGCATCTGT+AGG | - | chr4.3:3900495-3900514 | None:intergenic | 45.0% | |
| AACTGTGAACTTGTCTGCCA+AGG | - | chr4.3:3903033-3903052 | None:intergenic | 45.0% | |
| AACTTGGTTGTCCCGAACTT+TGG | + | chr4.3:3901703-3901722 | MS.gene55853:CDS | 45.0% | |
| AATAGAGGTCAGGAAAGAGC+AGG | - | chr4.3:3899760-3899779 | None:intergenic | 45.0% | |
| ACCACCCAGCTTAAATTCCA+TGG | - | chr4.3:3899312-3899331 | None:intergenic | 45.0% | |
| ACCATGGAATTTAAGCTGGG+TGG | + | chr4.3:3899308-3899327 | MS.gene55853:intron | 45.0% | |
| ACTGTGAACTTGTCTGCCAA+GGG | - | chr4.3:3903032-3903051 | None:intergenic | 45.0% | |
| AGCATTCTTGATCCTGACGA+AGG | + | chr4.3:3901903-3901922 | MS.gene55853:CDS | 45.0% | |
| AGCCTCTACCGTATACCAAA+TGG | - | chr4.3:3902762-3902781 | None:intergenic | 45.0% | |
| AGGACCTATGGAAACTGTTG+GGG | + | chr4.3:3898971-3898990 | MS.gene55853:intron | 45.0% | |
| ATGGGGCCACCATAATCAAA+TGG | - | chr4.3:3901100-3901119 | None:intergenic | 45.0% | |
| CAGGACCTATGGAAACTGTT+GGG | + | chr4.3:3898970-3898989 | MS.gene55853:intron | 45.0% | |
| CATACTAATGCCCCTCATCA+TGG | - | chr4.3:3902105-3902124 | None:intergenic | 45.0% | |
| CATCAGGTTCTTCTTCACCA+AGG | - | chr4.3:3901449-3901468 | None:intergenic | 45.0% | |
| CCATAGTAGAGTTGAGCAGA+TGG | - | chr4.3:3898484-3898503 | None:intergenic | 45.0% | |
| CCATCTGCTCAACTCTACTA+TGG | + | chr4.3:3898481-3898500 | MS.gene55853:intron | 45.0% | |
| CGGTCAAATAGTTGGAGGTA+GGG | - | chr4.3:3898447-3898466 | None:intergenic | 45.0% | |
| CTATTGACAGGAAACTCTCC+TGG | + | chr4.3:3897899-3897918 | MS.gene55853:intron | 45.0% | |
| CTTCAGAAACTTCAAGCGGA+AGG | - | chr4.3:3901476-3901495 | None:intergenic | 45.0% | |
| GAAACTAGGCTTAGGTGGTT+TGG | + | chr4.3:3899582-3899601 | MS.gene55853:intron | 45.0% | |
| GACAACATTGGAGAGAGTTG+GGG | + | chr4.3:3899533-3899552 | MS.gene55853:intron | 45.0% | |
| GGAATCTAGGCAAGATGATC+AGG | + | chr4.3:3903097-3903116 | MS.gene55853:CDS | 45.0% | |
| GGAGAAGTAACAACTACAGC+TGG | - | chr4.3:3902685-3902704 | None:intergenic | 45.0% | |
| GGTACTCGTCTTAGGTGATT+CGG | - | chr4.3:3898536-3898555 | None:intergenic | 45.0% | |
| GTCCCTACAACACACTAGAT+TGG | - | chr4.3:3902706-3902725 | None:intergenic | 45.0% | |
| GTTGCATCCACACCAAAGTT+CGG | - | chr4.3:3901718-3901737 | None:intergenic | 45.0% | |
| GTTGGAAAGAGCTGCAAACT+TGG | + | chr4.3:3901687-3901706 | MS.gene55853:intron | 45.0% | |
| GTTGTACGAGACAGTGTTCT+AGG | + | chr4.3:3899415-3899434 | MS.gene55853:intron | 45.0% | |
| TAGTAGAGTTGAGCAGATGG+AGG | - | chr4.3:3898481-3898500 | None:intergenic | 45.0% | |
| TCCTGACGAAGGTAATCACT+TGG | + | chr4.3:3901914-3901933 | MS.gene55853:intron | 45.0% | |
| TCGGTCAAATAGTTGGAGGT+AGG | - | chr4.3:3898448-3898467 | None:intergenic | 45.0% | |
| TCTCCAAGTCTGAGGAATCT+AGG | + | chr4.3:3903084-3903103 | MS.gene55853:CDS | 45.0% | |
| TGAGCAGATGGAGGAAATGT+TGG | - | chr4.3:3898472-3898491 | None:intergenic | 45.0% | |
| TGGATCGGTCAAATAGTTGG+AGG | - | chr4.3:3898452-3898471 | None:intergenic | 45.0% | |
| TTCTCACTAACAGAGCTCCT+TGG | + | chr4.3:3901429-3901448 | MS.gene55853:intron | 45.0% | |
| TTCTTCTTCTGGATGCAGGT+TGG | + | chr4.3:3900073-3900092 | MS.gene55853:intron | 45.0% | |
| TTCTTGACCTAAGCCAACAC+AGG | + | chr4.3:3899871-3899890 | MS.gene55853:intron | 45.0% | |
| TTGCATCCACACCAAAGTTC+GGG | - | chr4.3:3901717-3901736 | None:intergenic | 45.0% | |
| TTGCCTAGATTCCTCAGACT+TGG | - | chr4.3:3903090-3903109 | None:intergenic | 45.0% | |
| TTGTGGAAACTAGGCTTAGG+TGG | + | chr4.3:3899577-3899596 | MS.gene55853:intron | 45.0% | |
| ! | AAGCCTTGTCCTACTAAGTG+GGG | - | chr4.3:3899709-3899728 | None:intergenic | 45.0% |
| ! | CAAGCCTTGTCCTACTAAGT+GGG | - | chr4.3:3899710-3899729 | None:intergenic | 45.0% |
| ! | GAATCTACTTGCTGACGGAA+AGG | - | chr4.3:3902439-3902458 | None:intergenic | 45.0% |
| ! | TTTTACCAGCACGAAACTCC+AGG | - | chr4.3:3897920-3897939 | None:intergenic | 45.0% |
| ! | TTTTTGTCTCAGGGTGAGGA+GGG | + | chr4.3:3898151-3898170 | MS.gene55853:intron | 45.0% |
| !! | ATCTGATCCTGTGTTGGCTT+AGG | - | chr4.3:3899881-3899900 | None:intergenic | 45.0% |
| !!! | CCGCTGGTTTTTAGTTGAAG+TGG | + | chr4.3:3898125-3898144 | MS.gene55853:intron | 45.0% |
| !!! | GAACGAGGCTATTTTTGAGC+AGG | + | chr4.3:3899910-3899929 | MS.gene55853:CDS | 45.0% |
| !!! | GTTGTTTTTGTCTCAGGGTG+AGG | + | chr4.3:3898147-3898166 | MS.gene55853:intron | 45.0% |
| AAGGACTCGTTCGCATTGCT+AGG | + | chr4.3:3897979-3897998 | MS.gene55853:CDS | 50.0% | |
| ACTTCCATCCCAGATCTTCC+TGG | - | chr4.3:3897832-3897851 | None:intergenic | 50.0% | |
| AGAATTGCAGGATCGTCCAC+TGG | - | chr4.3:3900325-3900344 | None:intergenic | 50.0% | |
| AGGACTCGTTCGCATTGCTA+GGG | + | chr4.3:3897980-3897999 | MS.gene55853:CDS | 50.0% | |
| CAACCCCACTTAGTAGGACA+AGG | + | chr4.3:3899703-3899722 | MS.gene55853:intron | 50.0% | |
| CACTGGATAAGCACCCTGTA+TGG | + | chr4.3:3900736-3900755 | MS.gene55853:intron | 50.0% | |
| CCACTTAGTAGGACAAGGCT+TGG | + | chr4.3:3899708-3899727 | MS.gene55853:intron | 50.0% | |
| CCTATGGAAACTGTTGGGGA+AGG | + | chr4.3:3898975-3898994 | MS.gene55853:intron | 50.0% | |
| CCTTCCCCAACAGTTTCCAT+AGG | - | chr4.3:3898978-3898997 | None:intergenic | 50.0% | |
| CGCTCGCTCTTTGCGTTTAT+TGG | + | chr4.3:3897721-3897740 | MS.gene55853:intron | 50.0% | |
| CTAAAAACCAGCGGCAGTCA+TGG | - | chr4.3:3898119-3898138 | None:intergenic | 50.0% | |
| CTGTGAACTTGTCTGCCAAG+GGG | - | chr4.3:3903031-3903050 | None:intergenic | 50.0% | |
| CTTGTCCTACTAAGTGGGGT+TGG | - | chr4.3:3899705-3899724 | None:intergenic | 50.0% | |
| GCAGGACCTATGGAAACTGT+TGG | + | chr4.3:3898969-3898988 | MS.gene55853:intron | 50.0% | |
| GCCAAGTGATTACCTTCGTC+AGG | - | chr4.3:3901918-3901937 | None:intergenic | 50.0% | |
| GGATTCTGTCTCCAAGTCTG+AGG | + | chr4.3:3903076-3903095 | MS.gene55853:CDS | 50.0% | |
| GTAGTTCCTGATGCACGCAA+AGG | + | chr4.3:3897960-3897979 | MS.gene55853:CDS | 50.0% | |
| TAAGCCAGGAAGATCTGGGA+TGG | + | chr4.3:3897825-3897844 | MS.gene55853:intron | 50.0% | |
| TCAAGCGGAAGGGATACATC+AGG | - | chr4.3:3901465-3901484 | None:intergenic | 50.0% | |
| TGTAGCCAACCCCACTTAGT+AGG | + | chr4.3:3899697-3899716 | MS.gene55853:intron | 50.0% | |
| TGTAGGTTTCAGGCGTGTGT+AGG | + | chr4.3:3902877-3902896 | MS.gene55853:intron | 50.0% | |
| ! | ACGTGTAAGCCTTATGCCAG+TGG | + | chr4.3:3900306-3900325 | MS.gene55853:intron | 50.0% |
| ! | CCAAGCCTTGTCCTACTAAG+TGG | - | chr4.3:3899711-3899730 | None:intergenic | 50.0% |
| ! | CTACTTGCTGACGGAAAGGT+GGG | - | chr4.3:3902435-3902454 | None:intergenic | 50.0% |
| ! | GTAGGACAAGGCTTGGTTGT+TGG | + | chr4.3:3899715-3899734 | MS.gene55853:intron | 50.0% |
| ! | GTTTTTGTCTCAGGGTGAGG+AGG | + | chr4.3:3898150-3898169 | MS.gene55853:intron | 50.0% |
| ! | TCTACTTGCTGACGGAAAGG+TGG | - | chr4.3:3902436-3902455 | None:intergenic | 50.0% |
| !! | AAGTACATACCGGCTCTACG+TGG | - | chr4.3:3900715-3900734 | None:intergenic | 50.0% |
| !! | AGTACATACCGGCTCTACGT+GGG | - | chr4.3:3900714-3900733 | None:intergenic | 50.0% |
| !! | AGTGGAGGAGTGTTGTTGCA+AGG | - | chr4.3:3898869-3898888 | None:intergenic | 50.0% |
| !! | GATTGCAGGAAAAGCGTCGA+TGG | - | chr4.3:3897654-3897673 | None:intergenic | 50.0% |
| !! | GTCTTTTCTGGAGGCTCTTG+AGG | + | chr4.3:3903055-3903074 | MS.gene55853:CDS | 50.0% |
| !! | GTGGAGGAGTGTTGTTGCAA+GGG | - | chr4.3:3898868-3898887 | None:intergenic | 50.0% |
| !! | TGGAGGAGTGTTGTTGCAAG+GGG | - | chr4.3:3898867-3898886 | None:intergenic | 50.0% |
| AACTCAACCATGACTGCCGC+TGG | + | chr4.3:3898109-3898128 | MS.gene55853:intron | 55.0% | |
| ACGAGTCCTTTGCGTGCATC+AGG | - | chr4.3:3897969-3897988 | None:intergenic | 55.0% | |
| ACTCTCCTGGAGTTTCGTGC+TGG | + | chr4.3:3897912-3897931 | MS.gene55853:CDS | 55.0% | |
| AGCAACATTGGACCTGCTGC+AGG | + | chr4.3:3901793-3901812 | MS.gene55853:CDS | 55.0% | |
| ATTGGGTACCCACGTAGAGC+CGG | + | chr4.3:3900703-3900722 | MS.gene55853:intron | 55.0% | |
| CAGGATCGTCCACTGGCATA+AGG | - | chr4.3:3900318-3900337 | None:intergenic | 55.0% | |
| GAAGCTAGACGCTGCTCCAA+TGG | - | chr4.3:3902282-3902301 | None:intergenic | 55.0% | |
| GAGCCGGTATGTACTTGCAC+TGG | + | chr4.3:3900719-3900738 | MS.gene55853:intron | 55.0% | |
| GGTTGTCCCGAACTTTGGTG+TGG | + | chr4.3:3901708-3901727 | MS.gene55853:CDS | 55.0% | |
| TCGCTGCAGGTACTTCGAAC+AGG | + | chr4.3:3902543-3902562 | MS.gene55853:intron | 55.0% | |
| ! | CGACGCTTTTCCTGCAATCC+AGG | + | chr4.3:3897655-3897674 | MS.gene55853:CDS | 55.0% |
| !! | GGAGGAGTGTTGTTGCAAGG+GGG | - | chr4.3:3898866-3898885 | None:intergenic | 55.0% |
| GAGCGAGCGAGCGAGCGAAA+AGG | - | chr4.3:3897706-3897725 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3897638 | 3903163 | 3897638 | ID=MS.gene55853 |
| chr4.3 | mRNA | 3897638 | 3903163 | 3897638 | ID=MS.gene55853.t1;Parent=MS.gene55853 |
| chr4.3 | exon | 3897638 | 3897676 | 3897638 | ID=MS.gene55853.t1.exon1;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3897638 | 3897676 | 3897638 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3897909 | 3898001 | 3897909 | ID=MS.gene55853.t1.exon2;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3897909 | 3898001 | 3897909 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3898163 | 3898222 | 3898163 | ID=MS.gene55853.t1.exon3;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3898163 | 3898222 | 3898163 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3899893 | 3899931 | 3899893 | ID=MS.gene55853.t1.exon4;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3899893 | 3899931 | 3899893 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3900016 | 3900090 | 3900016 | ID=MS.gene55853.t1.exon5;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3900016 | 3900090 | 3900016 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3900192 | 3900258 | 3900192 | ID=MS.gene55853.t1.exon6;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3900192 | 3900258 | 3900192 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3901442 | 3901523 | 3901442 | ID=MS.gene55853.t1.exon7;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3901442 | 3901523 | 3901442 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3901696 | 3901814 | 3901696 | ID=MS.gene55853.t1.exon8;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3901696 | 3901814 | 3901696 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3901901 | 3901924 | 3901901 | ID=MS.gene55853.t1.exon9;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3901901 | 3901924 | 3901901 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3902220 | 3902314 | 3902220 | ID=MS.gene55853.t1.exon10;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3902220 | 3902314 | 3902220 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3902391 | 3902468 | 3902391 | ID=MS.gene55853.t1.exon11;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3902391 | 3902468 | 3902391 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3902552 | 3902606 | 3902552 | ID=MS.gene55853.t1.exon12;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3902552 | 3902606 | 3902552 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| chr4.3 | exon | 3903039 | 3903163 | 3903039 | ID=MS.gene55853.t1.exon13;Parent=MS.gene55853.t1 |
| chr4.3 | CDS | 3903039 | 3903163 | 3903039 | ID=cds.MS.gene55853.t1;Parent=MS.gene55853.t1 |
| Gene Sequence |
| Protein sequence |
