Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20187.t1 | RHN43535.1 | 99.7 | 316 | 1 | 0 | 1 | 316 | 1 | 316 | 2.30E-172 | 614.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20187.t1 | O48726 | 69.2 | 299 | 90 | 2 | 4 | 301 | 2 | 299 | 1.9e-111 | 403.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20187.t1 | G7LIU7 | 99.7 | 316 | 1 | 0 | 1 | 316 | 1 | 316 | 1.7e-172 | 614.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05134 | MS.gene20187 | 0.81939 | 1.19E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene20187 | 0.827414 | 1.59E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74847 | MS.gene20187 | PPI |
| MS.gene57118 | MS.gene20187 | PPI |
| MS.gene95863 | MS.gene20187 | PPI |
| MS.gene058594 | MS.gene20187 | PPI |
| MS.gene20187 | MS.gene015610 | PPI |
| MS.gene62646 | MS.gene20187 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20187.t1 | MTR_8g101230 | 99.684 | 316 | 1 | 0 | 1 | 316 | 1 | 316 | 0.0 | 632 |
| MS.gene20187.t1 | MTR_8g101230 | 97.785 | 316 | 1 | 1 | 1 | 316 | 1 | 310 | 0.0 | 612 |
| MS.gene20187.t1 | MTR_8g101230 | 99.636 | 275 | 1 | 0 | 1 | 275 | 1 | 275 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20187.t1 | AT2G26590 | 67.732 | 313 | 86 | 3 | 4 | 315 | 2 | 300 | 5.56e-147 | 416 |
| MS.gene20187.t1 | AT2G26590 | 67.732 | 313 | 86 | 3 | 4 | 315 | 2 | 300 | 5.56e-147 | 416 |
| MS.gene20187.t1 | AT2G26590 | 67.732 | 313 | 86 | 3 | 4 | 315 | 2 | 300 | 5.56e-147 | 416 |
| MS.gene20187.t1 | AT2G26590 | 66.134 | 313 | 87 | 4 | 4 | 315 | 2 | 296 | 1.02e-140 | 399 |
Find 71 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTCACTAGAGGGTAAA+AGG | 0.209513 | 4.4:+4176865 | MS.gene20187:CDS |
| ATCTTCTGGTCCAGTTAAAT+TGG | 0.244685 | 4.4:+4181276 | MS.gene20187:CDS |
| TAACATTACCTCTGGTAAAT+AGG | 0.276133 | 4.4:-4181827 | None:intergenic |
| CAGATAGATTTGTCCCAGTT+TGG | 0.317934 | 4.4:+4182092 | MS.gene20187:CDS |
| ATGACAGAAAGTTCTTCTTC+TGG | 0.336325 | 4.4:+4179580 | MS.gene20187:CDS |
| TACTTGGATCAATTCCAAAC+TGG | 0.345350 | 4.4:-4182106 | None:intergenic |
| TGGAGATCTGCCAATTTAAC+TGG | 0.349597 | 4.4:-4181286 | None:intergenic |
| ACTAGCGATGTAACATCTTC+TGG | 0.352930 | 4.4:+4181262 | MS.gene20187:CDS |
| GAGATTATTACCTGGATTGC+AGG | 0.356564 | 4.4:-4176620 | None:intergenic |
| GGCTACTTGGATTCATCCAT+TGG | 0.381548 | 4.4:-4182667 | None:intergenic |
| TGATCTGATATTGCCATTGA+TGG | 0.395309 | 4.4:+4181774 | MS.gene20187:CDS |
| ACTAGAAACTTACATTTACT+TGG | 0.408411 | 4.4:-4182122 | None:intergenic |
| GATTAGGTTAATCAAACATC+TGG | 0.417400 | 4.4:+4179528 | MS.gene20187:intron |
| GATTACCTCAACAGACCATT+AGG | 0.418595 | 4.4:+4179755 | MS.gene20187:CDS |
| ACGAGTCCTTTGCGTGCATC+AGG | 0.422741 | 4.4:-4176894 | None:intergenic |
| GGAATCTAGGCAAGATGATC+AGG | 0.427826 | 4.4:+4182621 | MS.gene20187:CDS |
| TCTCCAAGTCTGAGGAATCT+AGG | 0.438245 | 4.4:+4182608 | MS.gene20187:CDS |
| AAGTAGCCTGCCAGGCTACT+TGG | 0.438982 | 4.4:-4182680 | None:intergenic |
| GTTGCATCCACACCAAAGTT+CGG | 0.439990 | 4.4:-4181241 | None:intergenic |
| TTGCTGCAGGTACTTCGAAC+AGG | 0.441205 | 4.4:+4182068 | MS.gene20187:intron |
| CAATGTTGCTCAATATTCTC+TGG | 0.443937 | 4.4:-4181306 | None:intergenic |
| TTGCATCCACACCAAAGTTC+GGG | 0.455855 | 4.4:-4181240 | None:intergenic |
| GCTACTTGGATTCATCCATT+GGG | 0.458064 | 4.4:-4182666 | None:intergenic |
| AAAGTTCTTCTTCTGGATGC+AGG | 0.461672 | 4.4:+4179587 | MS.gene20187:CDS |
| GCCAAGTGATTACCTTCGTC+AGG | 0.468536 | 4.4:-4181441 | None:intergenic |
| ATCAATGGCAATATCAGATC+AGG | 0.469632 | 4.4:-4181772 | None:intergenic |
| AAGGACTCGTTCGCATTGCT+AGG | 0.470556 | 4.4:+4176907 | MS.gene20187:CDS |
| CTGTTGACAGGAAACTCTCC+TGG | 0.487004 | 4.4:+4176827 | MS.gene20187:intron |
| TTGGTCTCCAGAAGATATAT+TGG | 0.495383 | 4.4:+4181921 | MS.gene20187:CDS |
| AACAACTCCAATATATCTTC+TGG | 0.501293 | 4.4:-4181928 | None:intergenic |
| AATGGTAACGTCTCCATCAA+TGG | 0.501612 | 4.4:-4181787 | None:intergenic |
| ATTCTATGATGTAGGGTACT+TGG | 0.504079 | 4.4:+4181902 | MS.gene20187:intron |
| TTGCCTAGATTCCTCAGACT+TGG | 0.504515 | 4.4:-4182611 | None:intergenic |
| GCTTGAAGTTTCTGAAGATA+CGG | 0.509208 | 4.4:+4181005 | MS.gene20187:CDS |
| GTTGGAAAGAGCTGCAAACT+TGG | 0.509813 | 4.4:+4181213 | MS.gene20187:intron |
| AACTTGGTTGTCCCGAACTT+TGG | 0.511711 | 4.4:+4181229 | MS.gene20187:CDS |
| TTCTCACTAACAGAGCTCCT+TGG | 0.514456 | 4.4:+4180955 | MS.gene20187:intron |
| CAGAGAATATTGAGCAACAT+TGG | 0.515670 | 4.4:+4181307 | MS.gene20187:CDS |
| AGCAACATTGGACCTGCTGC+AGG | 0.516938 | 4.4:+4181319 | MS.gene20187:CDS |
| AATGTCACTAGAGGGTAAAA+GGG | 0.518946 | 4.4:+4176866 | MS.gene20187:CDS |
| ATTGATGGAGACGTTACCAT+TGG | 0.528804 | 4.4:+4181789 | MS.gene20187:CDS |
| ACTTGGATCAATTCCAAACT+GGG | 0.539991 | 4.4:-4182105 | None:intergenic |
| GAAGCTAGACGCTGCTCCAA+TGG | 0.546492 | 4.4:-4181805 | None:intergenic |
| ATCTCAATCTTGTACCCCAA+TGG | 0.549644 | 4.4:+4182651 | MS.gene20187:CDS |
| GGTTAATCAAACATCTGGAA+GGG | 0.549885 | 4.4:+4179533 | MS.gene20187:intron |
| TTCAGAAACTTCAAGCGGAA+GGG | 0.552715 | 4.4:-4180998 | None:intergenic |
| TCTACTTGCTGACGGAAAGG+TGG | 0.554317 | 4.4:-4181958 | None:intergenic |
| GATTGCAGGAAAAGCGTCGA+TGG | 0.560072 | 4.4:-4176606 | None:intergenic |
| TGTAACTTATTACCTGCAGC+AGG | 0.562977 | 4.4:-4181331 | None:intergenic |
| CTACTTGCTGACGGAAAGGT+GGG | 0.563809 | 4.4:-4181957 | None:intergenic |
| GAATCTACTTGCTGACGGAA+AGG | 0.566905 | 4.4:-4181961 | None:intergenic |
| CTTCAGAAACTTCAAGCGGA+AGG | 0.572912 | 4.4:-4180999 | None:intergenic |
| TCAAGCGGAAGGGATACATC+AGG | 0.576564 | 4.4:-4180988 | None:intergenic |
| ACTCTCCTGGAGTTTCGTGC+TGG | 0.579564 | 4.4:+4176840 | MS.gene20187:CDS |
| TAAAAGAATCTACTTGCTGA+CGG | 0.580735 | 4.4:-4181966 | None:intergenic |
| AGGTTAATCAAACATCTGGA+AGG | 0.590396 | 4.4:+4179532 | MS.gene20187:intron |
| TGCTGGTAAAATGTCACTAG+AGG | 0.593216 | 4.4:+4176857 | MS.gene20187:CDS |
| ATTTAATTAGGCTTTGAACT+CGG | 0.598507 | 4.4:+4181736 | MS.gene20187:intron |
| AGGACTCGTTCGCATTGCTA+GGG | 0.600668 | 4.4:+4176908 | MS.gene20187:CDS |
| GTAGTTCCTGATGCACGCAA+AGG | 0.629923 | 4.4:+4176888 | MS.gene20187:CDS |
| GGTTGTCCCGAACTTTGGTG+TGG | 0.640547 | 4.4:+4181234 | MS.gene20187:CDS |
| TTGAAGATGACATCTCATCC+AGG | 0.641031 | 4.4:+4181028 | MS.gene20187:CDS |
| GCTGGTAAAATGTCACTAGA+GGG | 0.641098 | 4.4:+4176858 | MS.gene20187:CDS |
| TCTAGCTTCCTATTTACCAG+AGG | 0.641283 | 4.4:+4181819 | MS.gene20187:CDS |
| GGATTCTGTCTCCAAGTCTG+AGG | 0.641302 | 4.4:+4182600 | MS.gene20187:CDS |
| CTACTTGGATTCATCCATTG+GGG | 0.648704 | 4.4:-4182665 | None:intergenic |
| ACTTACCTAATGGTCTGTTG+AGG | 0.651428 | 4.4:-4179760 | None:intergenic |
| AGCATTCTTGATCCTGACGA+AGG | 0.660593 | 4.4:+4181429 | MS.gene20187:CDS |
| CATCAGGTTCTTCTTCACCA+AGG | 0.686746 | 4.4:-4180972 | None:intergenic |
| GTATCTTCAGAAACTTCAAG+CGG | 0.690380 | 4.4:-4181003 | None:intergenic |
| TCAGATAATATTTCCGAACG+AGG | 0.696593 | 4.4:+4179413 | MS.gene20187:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGTAAATGAAATTTATA+GGG | + | chr4.4:4178177-4178196 | MS.gene20187:intron | 10.0% |
| !! | TAAAAATAAACAAAAAATGA+AGG | + | chr4.4:4182448-4182467 | MS.gene20187:intron | 10.0% |
| !! | TATTAGTAAATGAAATTTAT+AGG | + | chr4.4:4178176-4178195 | MS.gene20187:intron | 10.0% |
| !! | TATTTACAAGATTATAAATA+AGG | + | chr4.4:4179958-4179977 | MS.gene20187:intron | 10.0% |
| !! | TGTGAAAAAAAAATAAAAAT+TGG | - | chr4.4:4177796-4177815 | None:intergenic | 10.0% |
| !! | TTATAAAAAATATTAGCAAA+AGG | + | chr4.4:4181683-4181702 | MS.gene20187:intron | 10.0% |
| !! | AAAAAAAAAACTTAAACTTC+AGG | - | chr4.4:4177705-4177724 | None:intergenic | 15.0% |
| !! | AACAGCAATTATATATATTT+GGG | - | chr4.4:4177163-4177182 | None:intergenic | 15.0% |
| !! | ATCAAAATCAATAACAATTA+AGG | - | chr4.4:4182170-4182189 | None:intergenic | 15.0% |
| !! | ATGAAATGTAAAAAAGAAAA+AGG | - | chr4.4:4182016-4182035 | None:intergenic | 15.0% |
| !! | ATTTCATTTCAAAAGATATT+CGG | + | chr4.4:4182029-4182048 | MS.gene20187:intron | 15.0% |
| !! | TATAACTAGTAAAAACAAAA+GGG | + | chr4.4:4177665-4177684 | MS.gene20187:intron | 15.0% |
| !! | TGAAATGTAAAAAAGAAAAA+GGG | - | chr4.4:4182015-4182034 | None:intergenic | 15.0% |
| !! | TTAGTAAATGAAATTTATAG+GGG | + | chr4.4:4178178-4178197 | MS.gene20187:intron | 15.0% |
| !! | TTATAACTAGTAAAAACAAA+AGG | + | chr4.4:4177664-4177683 | MS.gene20187:intron | 15.0% |
| !!! | ATTTTGCACAAAAAATTAAT+CGG | - | chr4.4:4177307-4177326 | None:intergenic | 15.0% |
| !!! | TGAACAATTTTGTTATTTAT+CGG | + | chr4.4:4177551-4177570 | MS.gene20187:intron | 15.0% |
| !!! | TTATTTTTTTTTCACAAAGT+GGG | + | chr4.4:4177800-4177819 | MS.gene20187:intron | 15.0% |
| !!! | TTGTACATAATTTATTTTCA+TGG | + | chr4.4:4180492-4180511 | MS.gene20187:intron | 15.0% |
| !!! | TTTATTTTTTTTTCACAAAG+TGG | + | chr4.4:4177799-4177818 | MS.gene20187:intron | 15.0% |
| !! | AAAATCAATAACAATTAAGG+TGG | - | chr4.4:4182167-4182186 | None:intergenic | 20.0% |
| !! | AATTTGTATAGAATAATAGC+TGG | + | chr4.4:4177280-4177299 | MS.gene20187:intron | 20.0% |
| !! | AGAATCAAAGAAATATATAC+AGG | + | chr4.4:4177379-4177398 | MS.gene20187:intron | 20.0% |
| !! | AGATCTAAAGATTTATAAGT+TGG | + | chr4.4:4179145-4179164 | MS.gene20187:intron | 20.0% |
| !! | ATAGGGAAATAATATTTGAA+TGG | + | chr4.4:4177436-4177455 | MS.gene20187:intron | 20.0% |
| !! | ATCTTTATATAGCAGAAAAT+AGG | + | chr4.4:4177418-4177437 | MS.gene20187:intron | 20.0% |
| !! | ATGAATCAAAACCAAATAAA+AGG | - | chr4.4:4180828-4180847 | None:intergenic | 20.0% |
| !! | CATATCATCAAAAAAGTAAT+AGG | - | chr4.4:4181404-4181423 | None:intergenic | 20.0% |
| !! | CCTAAAAAAAAAAATTGACA+TGG | - | chr4.4:4180134-4180153 | None:intergenic | 20.0% |
| !! | GAACAGCAATTATATATATT+TGG | - | chr4.4:4177164-4177183 | None:intergenic | 20.0% |
| !! | GAATCAAAGAAATATATACA+GGG | + | chr4.4:4177380-4177399 | MS.gene20187:intron | 20.0% |
| !! | TATATATTTGGGAAGAAAAA+AGG | - | chr4.4:4177152-4177171 | None:intergenic | 20.0% |
| !! | TCTATGAAAATAAACACTAA+AGG | - | chr4.4:4178212-4178231 | None:intergenic | 20.0% |
| !! | TCTTTATATAGCAGAAAATA+GGG | + | chr4.4:4177419-4177438 | MS.gene20187:intron | 20.0% |
| !! | TTCGTTAAAAAATGCATATT+AGG | + | chr4.4:4180729-4180748 | MS.gene20187:intron | 20.0% |
| !!! | AAAGTATTTCCATTTGATTA+TGG | + | chr4.4:4180614-4180633 | MS.gene20187:intron | 20.0% |
| !!! | AGATTCTTTTACTTATGTAA+AGG | + | chr4.4:4181978-4181997 | MS.gene20187:intron | 20.0% |
| !!! | CAAAATAGATTTGAGATAAA+TGG | - | chr4.4:4177884-4177903 | None:intergenic | 20.0% |
| !!! | CCATGTCAATTTTTTTTTTT+AGG | + | chr4.4:4180131-4180150 | MS.gene20187:intron | 20.0% |
| !!! | CTAAAAGTTTGTTTTTTTGT+TGG | + | chr4.4:4181195-4181214 | MS.gene20187:intron | 20.0% |
| !!! | GAACAATTTTGTTATTTATC+GGG | + | chr4.4:4177552-4177571 | MS.gene20187:intron | 20.0% |
| !!! | TATTTTTTTTTCACAAAGTG+GGG | + | chr4.4:4177801-4177820 | MS.gene20187:intron | 20.0% |
| !!! | TTATAAGTTGGATAGAAATA+TGG | + | chr4.4:4179157-4179176 | MS.gene20187:intron | 20.0% |
| !!! | TTTGGATATTCAAATGTTTT+CGG | + | chr4.4:4181058-4181077 | MS.gene20187:intron | 20.0% |
| !!! | TTTTACTAGTTATAAACCAA+GGG | - | chr4.4:4177659-4177678 | None:intergenic | 20.0% |
| !!! | TTTTTACTAGTTATAAACCA+AGG | - | chr4.4:4177660-4177679 | None:intergenic | 20.0% |
| ! | AAGATAAAGAGATTATTACC+TGG | - | chr4.4:4176631-4176650 | None:intergenic | 25.0% |
| ! | AATGTAAAAAAGAAAAAGGG+AGG | - | chr4.4:4182012-4182031 | None:intergenic | 25.0% |
| ! | ACCAAAGAAAACTACTATAT+GGG | - | chr4.4:4177914-4177933 | None:intergenic | 25.0% |
| ! | ACTAGAAACTTACATTTACT+TGG | - | chr4.4:4182125-4182144 | None:intergenic | 25.0% |
| ! | ACTATAAAACTATGAACCAT+GGG | - | chr4.4:4177636-4177655 | None:intergenic | 25.0% |
| ! | AGCATCAAAATAAATACAGA+AGG | - | chr4.4:4179370-4179389 | None:intergenic | 25.0% |
| ! | AGCTTAATAGCTAACAAATA+TGG | + | chr4.4:4178534-4178553 | MS.gene20187:intron | 25.0% |
| ! | AGGATTATAAATGACAACAT+TGG | + | chr4.4:4179038-4179057 | MS.gene20187:intron | 25.0% |
| ! | ATCATCAAGTCAAAATACTT+AGG | - | chr4.4:4179644-4179663 | None:intergenic | 25.0% |
| ! | ATGTAAAAAAGAAAAAGGGA+GGG | - | chr4.4:4182011-4182030 | None:intergenic | 25.0% |
| ! | ATGTAGTATTCTATGATGTA+GGG | + | chr4.4:4181895-4181914 | MS.gene20187:intron | 25.0% |
| ! | CAAATGGAAAATGTGAATAA+AGG | - | chr4.4:4182271-4182290 | None:intergenic | 25.0% |
| ! | CCACGTTATCTTTATAAATA+AGG | - | chr4.4:4178333-4178352 | None:intergenic | 25.0% |
| ! | CGTAACCATACTAATATATT+TGG | - | chr4.4:4180761-4180780 | None:intergenic | 25.0% |
| ! | GAAAGCCAAATATATTAGTA+TGG | + | chr4.4:4180753-4180772 | MS.gene20187:intron | 25.0% |
| ! | GAAATATATACAGGGAAATT+AGG | + | chr4.4:4177388-4177407 | MS.gene20187:intron | 25.0% |
| ! | GATTATATATTTATTGCTGC+AGG | + | chr4.4:4182055-4182074 | MS.gene20187:intron | 25.0% |
| ! | GGAAATAATATTTGAATGGT+AGG | + | chr4.4:4177440-4177459 | MS.gene20187:intron | 25.0% |
| ! | GGAACAACTAATATTTCAAT+TGG | - | chr4.4:4179349-4179368 | None:intergenic | 25.0% |
| ! | TAAACCATGAAATTTAAGCT+GGG | + | chr4.4:4178813-4178832 | MS.gene20187:intron | 25.0% |
| ! | TAACCAAACAACTTAGTATT+GGG | + | chr4.4:4180205-4180224 | MS.gene20187:intron | 25.0% |
| ! | TAGATTCCTATACACAATAA+AGG | - | chr4.4:4179697-4179716 | None:intergenic | 25.0% |
| ! | TATCTATTTATTTACCTGAC+TGG | + | chr4.4:4181169-4181188 | MS.gene20187:intron | 25.0% |
| ! | TCATCAAGTCAAAATACTTA+GGG | - | chr4.4:4179643-4179662 | None:intergenic | 25.0% |
| ! | TGCTTTACTCTTAATATCTT+GGG | + | chr4.4:4179457-4179476 | MS.gene20187:intron | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | + | chr4.4:4178748-4178767 | MS.gene20187:intron | 25.0% |
| ! | TTATCATTGTGACATACAAA+AGG | - | chr4.4:4178405-4178424 | None:intergenic | 25.0% |
| ! | TTCAACAATGCAAATTCAAA+GGG | - | chr4.4:4176990-4177009 | None:intergenic | 25.0% |
| ! | TTTCAAAAAAGACAAACTTC+AGG | - | chr4.4:4177737-4177756 | None:intergenic | 25.0% |
| !! | ATAATTGCTGTTCATTTGAA+CGG | + | chr4.4:4177171-4177190 | MS.gene20187:intron | 25.0% |
| !! | CAGTTTTCTTGCATTTAATT+AGG | + | chr4.4:4181724-4181743 | MS.gene20187:intron | 25.0% |
| !! | CCTTATTTATAAAGATAACG+TGG | + | chr4.4:4178330-4178349 | MS.gene20187:intron | 25.0% |
| !! | CTTTATTCACATTTTCCATT+TGG | + | chr4.4:4182269-4182288 | MS.gene20187:intron | 25.0% |
| !!! | ATTTAATTAGGCTTTGAACT+CGG | + | chr4.4:4181736-4181755 | MS.gene20187:intron | 25.0% |
| !!! | CGCTTAATTTATTTTCTTGT+TGG | - | chr4.4:4178968-4178987 | None:intergenic | 25.0% |
| !!! | TAAAAAGTGTTGTCAAATAG+TGG | + | chr4.4:4180382-4180401 | MS.gene20187:intron | 25.0% |
| !!! | TACTGAAACAATAGCTTTAT+AGG | - | chr4.4:4178449-4178468 | None:intergenic | 25.0% |
| !!! | TATTTTCTGAGAATTACTAC+TGG | + | chr4.4:4182488-4182507 | MS.gene20187:intron | 25.0% |
| !!! | TCTTGGGTATGATTATTTTA+TGG | + | chr4.4:4179473-4179492 | MS.gene20187:intron | 25.0% |
| !!! | TGCATTTTTTAACGAAATCT+AGG | - | chr4.4:4180725-4180744 | None:intergenic | 25.0% |
| AACAACTCCAATATATCTTC+TGG | - | chr4.4:4181931-4181950 | None:intergenic | 30.0% | |
| AAGTCAAAATAATAGAGGTC+AGG | - | chr4.4:4179287-4179306 | None:intergenic | 30.0% | |
| AATATTATCTGATCCTGTGT+TGG | - | chr4.4:4179405-4179424 | None:intergenic | 30.0% | |
| AATGAAGGAAAAAAGATACG+AGG | + | chr4.4:4182463-4182482 | MS.gene20187:intron | 30.0% | |
| ACAAGCAATGTTGTCAATAA+CGG | - | chr4.4:4180476-4180495 | None:intergenic | 30.0% | |
| ACAGTCTTAATAGATAGCAA+GGG | - | chr4.4:4181479-4181498 | None:intergenic | 30.0% | |
| ACATACCCAAACAACATATT+TGG | + | chr4.4:4177593-4177612 | MS.gene20187:intron | 30.0% | |
| ACCTATAGTAGAAAAGATTG+TGG | + | chr4.4:4179077-4179096 | MS.gene20187:intron | 30.0% | |
| AGATATTAAGAGTAAAGCAG+TGG | - | chr4.4:4179456-4179475 | None:intergenic | 30.0% | |
| AGATCAACGGTATAAACAAA+AGG | + | chr4.4:4177497-4177516 | MS.gene20187:intron | 30.0% | |
| AGATCTCAACACAGTTAAAA+GGG | - | chr4.4:4181379-4181398 | None:intergenic | 30.0% | |
| AGCACTTTAATGACAGAATA+TGG | - | chr4.4:4180645-4180664 | None:intergenic | 30.0% | |
| AGCTTACAATTCAAAGCAAA+AGG | - | chr4.4:4179792-4179811 | None:intergenic | 30.0% | |
| ATATACAGGGAAATTAGGAA+AGG | + | chr4.4:4177393-4177412 | MS.gene20187:intron | 30.0% | |
| ATCTTACTCTTACACATATG+TGG | + | chr4.4:4180689-4180708 | MS.gene20187:intron | 30.0% | |
| ATGGAAAATGTGAATAAAGG+TGG | - | chr4.4:4182268-4182287 | None:intergenic | 30.0% | |
| CAATTCTGCTTACTTAAGAA+TGG | + | chr4.4:4179856-4179875 | MS.gene20187:intron | 30.0% | |
| CACTTTAATGACAGAATATG+GGG | - | chr4.4:4180643-4180662 | None:intergenic | 30.0% | |
| CATGTAGTATTCTATGATGT+AGG | + | chr4.4:4181894-4181913 | MS.gene20187:intron | 30.0% | |
| CTAACCAAACAACTTAGTAT+TGG | + | chr4.4:4180204-4180223 | MS.gene20187:intron | 30.0% | |
| CTACATGAATCACTAAACAA+AGG | - | chr4.4:4181881-4181900 | None:intergenic | 30.0% | |
| CTGCTTTACTCTTAATATCT+TGG | + | chr4.4:4179456-4179475 | MS.gene20187:intron | 30.0% | |
| CTTCAACAATGCAAATTCAA+AGG | - | chr4.4:4176991-4177010 | None:intergenic | 30.0% | |
| GACCAAAGAAAACTACTATA+TGG | - | chr4.4:4177915-4177934 | None:intergenic | 30.0% | |
| GACTATAAAACTATGAACCA+TGG | - | chr4.4:4177637-4177656 | None:intergenic | 30.0% | |
| GATTAGGTTAATCAAACATC+TGG | + | chr4.4:4179528-4179547 | MS.gene20187:intron | 30.0% | |
| GCACTTTAATGACAGAATAT+GGG | - | chr4.4:4180644-4180663 | None:intergenic | 30.0% | |
| GCTAATAGTGAAAAGATCAA+CGG | + | chr4.4:4177484-4177503 | MS.gene20187:intron | 30.0% | |
| GTAAACCATGAAATTTAAGC+TGG | + | chr4.4:4178812-4178831 | MS.gene20187:intron | 30.0% | |
| GTATTTCCATTTGATTATGG+TGG | + | chr4.4:4180617-4180636 | MS.gene20187:intron | 30.0% | |
| GTGGTAAAATTAGACAAGAT+AGG | + | chr4.4:4179018-4179037 | MS.gene20187:intron | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | + | chr4.4:4178747-4178766 | MS.gene20187:intron | 30.0% | |
| TAAACCAAGTTAACCTTTGT+AGG | + | chr4.4:4178647-4178666 | MS.gene20187:intron | 30.0% | |
| TAACATTACCTCTGGTAAAT+AGG | - | chr4.4:4181830-4181849 | None:intergenic | 30.0% | |
| TACGAACCAAATATGTTGTT+TGG | - | chr4.4:4177602-4177621 | None:intergenic | 30.0% | |
| TAGAAAAGATTGTGGAAACT+AGG | + | chr4.4:4179085-4179104 | MS.gene20187:intron | 30.0% | |
| TATACAGGGAAATTAGGAAA+GGG | + | chr4.4:4177394-4177413 | MS.gene20187:intron | 30.0% | |
| TATCTATTAAGACTGTGTGA+TGG | + | chr4.4:4181483-4181502 | MS.gene20187:intron | 30.0% | |
| TATTTAAACCGTGTAACTTG+TGG | - | chr4.4:4178744-4178763 | None:intergenic | 30.0% | |
| TATTTGAATGGTAGGAAATG+CGG | + | chr4.4:4177448-4177467 | MS.gene20187:intron | 30.0% | |
| TGCACATTGTTGTCAAATAA+CGG | + | chr4.4:4180305-4180324 | MS.gene20187:intron | 30.0% | |
| TGGAAAATGTGAATAAAGGT+GGG | - | chr4.4:4182267-4182286 | None:intergenic | 30.0% | |
| TGGTATTTGATAGAACACTA+TGG | + | chr4.4:4179177-4179196 | MS.gene20187:intron | 30.0% | |
| TGTGTAAGAGTAAGATCATA+TGG | - | chr4.4:4180685-4180704 | None:intergenic | 30.0% | |
| TGTGTGTCTATTATGGATAT+TGG | + | chr4.4:4178301-4178320 | MS.gene20187:intron | 30.0% | |
| TGTTTCAGTATATTACTTGC+AGG | + | chr4.4:4178459-4178478 | MS.gene20187:intron | 30.0% | |
| TTAATTAATGCGAAGAAGCT+AGG | + | chr4.4:4180106-4180125 | MS.gene20187:intron | 30.0% | |
| TTGCCAAGTCAAAATAATAG+AGG | - | chr4.4:4179292-4179311 | None:intergenic | 30.0% | |
| TTGCTAATGAGTACAATACT+TGG | + | chr4.4:4182357-4182376 | MS.gene20187:intron | 30.0% | |
| ! | ACAAATTTGCTTTCTAGTAC+TGG | + | chr4.4:4182315-4182334 | MS.gene20187:intron | 30.0% |
| ! | ACGAACCAAATATGTTGTTT+GGG | - | chr4.4:4177601-4177620 | None:intergenic | 30.0% |
| ! | CAACATATTTGGTTCGTATT+TGG | + | chr4.4:4177604-4177623 | MS.gene20187:intron | 30.0% |
| ! | CACATTTTCCATTTGGTATA+CGG | + | chr4.4:4182276-4182295 | MS.gene20187:intron | 30.0% |
| ! | TAAAAGAATCTACTTGCTGA+CGG | - | chr4.4:4181969-4181988 | None:intergenic | 30.0% |
| ! | TCCACAATCTTTTCTACTAT+AGG | - | chr4.4:4179081-4179100 | None:intergenic | 30.0% |
| ! | TCCCATATAGTAGTTTTCTT+TGG | + | chr4.4:4177910-4177929 | MS.gene20187:intron | 30.0% |
| ! | TCTACTATGGTGTTTCTAAT+GGG | + | chr4.4:4177988-4178007 | MS.gene20187:intron | 30.0% |
| ! | TTCAAGTCAAATTTTAAGCC+AGG | + | chr4.4:4176739-4176758 | MS.gene20187:intron | 30.0% |
| !! | AGAACTTGATTTGCAAAAAC+AGG | + | chr4.4:4177250-4177269 | MS.gene20187:intron | 30.0% |
| !! | ATGACAGAAAATTTTGATGC+TGG | + | chr4.4:4180799-4180818 | MS.gene20187:intron | 30.0% |
| !! | TGGCTTAAAATTTGACTTGA+AGG | - | chr4.4:4176740-4176759 | None:intergenic | 30.0% |
| !! | TTTGTTATTTATCGGGATGT+TGG | + | chr4.4:4177559-4177578 | MS.gene20187:intron | 30.0% |
| !!! | ATGGTTTTGAACAACCATTT+AGG | + | chr4.4:4180274-4180293 | MS.gene20187:intron | 30.0% |
| !!! | TGACCTCTATTATTTTGACT+TGG | + | chr4.4:4179286-4179305 | MS.gene20187:intron | 30.0% |
| !!! | TTCATAGTTTTATAGTCCCT+TGG | + | chr4.4:4177640-4177659 | MS.gene20187:intron | 30.0% |
| AAAACTGTATCCCATGATGA+GGG | + | chr4.4:4181617-4181636 | MS.gene20187:intron | 35.0% | |
| AAAATACTTAGGGAGACAAG+TGG | - | chr4.4:4179633-4179652 | None:intergenic | 35.0% | |
| AAAATGTGAATAAAGGTGGG+AGG | - | chr4.4:4182264-4182283 | None:intergenic | 35.0% | |
| AAATGTCACTAGAGGGTAAA+AGG | + | chr4.4:4176865-4176884 | MS.gene20187:CDS | 35.0% | |
| AAGGAGAGATACTTACCTAA+TGG | - | chr4.4:4179773-4179792 | None:intergenic | 35.0% | |
| AATGTCACTAGAGGGTAAAA+GGG | + | chr4.4:4176866-4176885 | MS.gene20187:CDS | 35.0% | |
| ACGAAAAGTCAATGCTACAT+TGG | - | chr4.4:4181855-4181874 | None:intergenic | 35.0% | |
| ACTGTCTCGTACAACATTAT+CGG | - | chr4.4:4178927-4178946 | None:intergenic | 35.0% | |
| ACTTGGATCAATTCCAAACT+GGG | - | chr4.4:4182108-4182127 | None:intergenic | 35.0% | |
| AGAGAGAGAGAGAGTTAATA+AGG | - | chr4.4:4178248-4178267 | None:intergenic | 35.0% | |
| AGATATGCAATGCACTAGTA+AGG | - | chr4.4:4181154-4181173 | None:intergenic | 35.0% | |
| AGCTGCTATGACATAAAAGA+TGG | - | chr4.4:4178051-4178070 | None:intergenic | 35.0% | |
| AGGCTTACACGTTAATAGAA+AGG | - | chr4.4:4179816-4179835 | None:intergenic | 35.0% | |
| AGGTTAATCAAACATCTGGA+AGG | + | chr4.4:4179532-4179551 | MS.gene20187:intron | 35.0% | |
| ATACAGGGAAATTAGGAAAG+GGG | + | chr4.4:4177395-4177414 | MS.gene20187:intron | 35.0% | |
| ATAGAGTGAGTGTGTTTCAA+AGG | - | chr4.4:4178086-4178105 | None:intergenic | 35.0% | |
| ATATTCTGACCTCTGATTCT+TGG | + | chr4.4:4179502-4179521 | MS.gene20187:intron | 35.0% | |
| ATCAATGGCAATATCAGATC+AGG | - | chr4.4:4181775-4181794 | None:intergenic | 35.0% | |
| ATCTTCTGGTCCAGTTAAAT+TGG | + | chr4.4:4181276-4181295 | MS.gene20187:CDS | 35.0% | |
| ATGACAGAAAGTTCTTCTTC+TGG | + | chr4.4:4179580-4179599 | MS.gene20187:CDS | 35.0% | |
| ATGGTTGTTCAAAACCATAC+AGG | - | chr4.4:4180272-4180291 | None:intergenic | 35.0% | |
| ATTAGTATGGTTACGTACAC+AGG | + | chr4.4:4180766-4180785 | MS.gene20187:intron | 35.0% | |
| CAAAGATGAAGATGTTGAGT+TGG | + | chr4.4:4178991-4179010 | MS.gene20187:intron | 35.0% | |
| CAATGTTGCTCAATATTCTC+TGG | - | chr4.4:4181309-4181328 | None:intergenic | 35.0% | |
| CACAGTCTTAATAGATAGCA+AGG | - | chr4.4:4181480-4181499 | None:intergenic | 35.0% | |
| CAGAGAATATTGAGCAACAT+TGG | + | chr4.4:4181307-4181326 | MS.gene20187:CDS | 35.0% | |
| CAGATCTCAACACAGTTAAA+AGG | - | chr4.4:4181380-4181399 | None:intergenic | 35.0% | |
| CATTCCATAGTGCTAAACAA+CGG | + | chr4.4:4178773-4178792 | MS.gene20187:intron | 35.0% | |
| CATTGGTATAACATTACCTC+TGG | - | chr4.4:4181838-4181857 | None:intergenic | 35.0% | |
| CCTATACACAATAAAGGTTC+AGG | - | chr4.4:4179691-4179710 | None:intergenic | 35.0% | |
| CCTGAACCTTTATTGTGTAT+AGG | + | chr4.4:4179688-4179707 | MS.gene20187:intron | 35.0% | |
| CTAAACAACGGAGAAATAGA+AGG | + | chr4.4:4178785-4178804 | MS.gene20187:intron | 35.0% | |
| CTAATCAAACCAAGAATCAG+AGG | - | chr4.4:4179514-4179533 | None:intergenic | 35.0% | |
| CTGTCAACAGACATAACAAA+CGG | - | chr4.4:4176817-4176836 | None:intergenic | 35.0% | |
| GAAACACACTCACTCTATAT+GGG | + | chr4.4:4178088-4178107 | MS.gene20187:intron | 35.0% | |
| GAATATCCAAACTAAGTACC+TGG | - | chr4.4:4181049-4181068 | None:intergenic | 35.0% | |
| GATATGCAATGCACTAGTAA+GGG | - | chr4.4:4181153-4181172 | None:intergenic | 35.0% | |
| GGTTAATCAAACATCTGGAA+GGG | + | chr4.4:4179533-4179552 | MS.gene20187:intron | 35.0% | |
| GTACCCAATACTAAGTTGTT+TGG | - | chr4.4:4180211-4180230 | None:intergenic | 35.0% | |
| GTATCCTACAAAGGTTAACT+TGG | - | chr4.4:4178654-4178673 | None:intergenic | 35.0% | |
| GTATCTTCAGAAACTTCAAG+CGG | - | chr4.4:4181006-4181025 | None:intergenic | 35.0% | |
| GTCATATACCACAAGTTACA+CGG | + | chr4.4:4178733-4178752 | MS.gene20187:intron | 35.0% | |
| GTTAGAAGTGAACAAGTGTT+GGG | + | chr4.4:4178559-4178578 | MS.gene20187:intron | 35.0% | |
| TAAAAGATGGTACTCGTCTT+AGG | - | chr4.4:4178038-4178057 | None:intergenic | 35.0% | |
| TACTTGGATCAATTCCAAAC+TGG | - | chr4.4:4182109-4182128 | None:intergenic | 35.0% | |
| TAGAGTGAGTGTGTTTCAAA+GGG | - | chr4.4:4178085-4178104 | None:intergenic | 35.0% | |
| TATATTACTTGCAGGACCTA+TGG | + | chr4.4:4178467-4178486 | MS.gene20187:intron | 35.0% | |
| TATGCCTTCTGTGTGAATTT+AGG | - | chr4.4:4178627-4178646 | None:intergenic | 35.0% | |
| TATTTATCGGGATGTTGGTA+CGG | + | chr4.4:4177564-4177583 | MS.gene20187:intron | 35.0% | |
| TCAAAGGGATGTTAAAAGCA+AGG | - | chr4.4:4176975-4176994 | None:intergenic | 35.0% | |
| TCAGATAATATTTCCGAACG+AGG | + | chr4.4:4179413-4179432 | MS.gene20187:CDS | 35.0% | |
| TCATTGTGACATACAAAAGG+AGG | - | chr4.4:4178402-4178421 | None:intergenic | 35.0% | |
| TCTTAAGTAAGCAGAATTGC+AGG | - | chr4.4:4179855-4179874 | None:intergenic | 35.0% | |
| TGAAACACACTCACTCTATA+TGG | + | chr4.4:4178087-4178106 | MS.gene20187:intron | 35.0% | |
| TGATCTGATATTGCCATTGA+TGG | + | chr4.4:4181774-4181793 | MS.gene20187:CDS | 35.0% | |
| TGGTTGTTCAAAACCATACA+GGG | - | chr4.4:4180271-4180290 | None:intergenic | 35.0% | |
| TGTACCTAAATTCACACAGA+AGG | + | chr4.4:4178620-4178639 | MS.gene20187:intron | 35.0% | |
| TGTGCACAAGTATTCCTAAA+TGG | - | chr4.4:4180291-4180310 | None:intergenic | 35.0% | |
| TGTGTTTCAAAGGGTAAGTT+GGG | - | chr4.4:4178076-4178095 | None:intergenic | 35.0% | |
| TGTTAGAAGTGAACAAGTGT+TGG | + | chr4.4:4178558-4178577 | MS.gene20187:intron | 35.0% | |
| TGTTTGAACGTATCCTACAA+AGG | - | chr4.4:4178663-4178682 | None:intergenic | 35.0% | |
| TTCGAAGTTTCATGTCTTGT+AGG | + | chr4.4:4182385-4182404 | MS.gene20187:intron | 35.0% | |
| TTGGTCTCCAGAAGATATAT+TGG | + | chr4.4:4181921-4181940 | MS.gene20187:CDS | 35.0% | |
| TTTCATGTCTTGTAGGTTTC+AGG | + | chr4.4:4182392-4182411 | MS.gene20187:intron | 35.0% | |
| ! | AATTTTAAGCCAGGAAGATC+TGG | + | chr4.4:4176748-4176767 | MS.gene20187:intron | 35.0% |
| ! | ATTCTATGATGTAGGGTACT+TGG | + | chr4.4:4181902-4181921 | MS.gene20187:intron | 35.0% |
| ! | ATTTTAAGCCAGGAAGATCT+GGG | + | chr4.4:4176749-4176768 | MS.gene20187:intron | 35.0% |
| ! | CTCTACTATGGTGTTTCTAA+TGG | + | chr4.4:4177987-4178006 | MS.gene20187:intron | 35.0% |
| ! | CTCTGATTCTTGGTTTGATT+AGG | + | chr4.4:4179512-4179531 | MS.gene20187:intron | 35.0% |
| ! | GATGCTGGTAACCTTTTATT+TGG | + | chr4.4:4180814-4180833 | MS.gene20187:intron | 35.0% |
| ! | GCTTGAAGTTTCTGAAGATA+CGG | + | chr4.4:4181005-4181024 | MS.gene20187:CDS | 35.0% |
| ! | TAACATGCAACAGAGCATTA+TGG | - | chr4.4:4177847-4177866 | None:intergenic | 35.0% |
| ! | TCTGTTCTGATTTGTAGTGT+AGG | - | chr4.4:4177362-4177381 | None:intergenic | 35.0% |
| !! | ATTTGACTTGAAGGTTACAG+TGG | - | chr4.4:4176731-4176750 | None:intergenic | 35.0% |
| !! | GTTCACAGTTTTGTCTTTTC+TGG | + | chr4.4:4182567-4182586 | MS.gene20187:CDS | 35.0% |
| !! | TTTGCCTATGTCACTTTGAA+AGG | - | chr4.4:4180865-4180884 | None:intergenic | 35.0% |
| !!! | AAGTGGTTGTTTTTGTCTCA+GGG | + | chr4.4:4177064-4177083 | MS.gene20187:intron | 35.0% |
| !!! | TTTTTTTCACAAAGTGGGGT+TGG | + | chr4.4:4177805-4177824 | MS.gene20187:intron | 35.0% |
| AAACTGTATCCCATGATGAG+GGG | + | chr4.4:4181618-4181637 | MS.gene20187:intron | 40.0% | |
| AAAGTTCTTCTTCTGGATGC+AGG | + | chr4.4:4179587-4179606 | MS.gene20187:CDS | 40.0% | |
| AAGCTGGGTGGTTAAAATAG+AGG | + | chr4.4:4178828-4178847 | MS.gene20187:intron | 40.0% | |
| AATGTTGTCAATAACGGTCG+TGG | - | chr4.4:4180470-4180489 | None:intergenic | 40.0% | |
| ACCACCCAGCTTAAATTTCA+TGG | - | chr4.4:4178820-4178839 | None:intergenic | 40.0% | |
| ACCATGAAATTTAAGCTGGG+TGG | + | chr4.4:4178816-4178835 | MS.gene20187:intron | 40.0% | |
| ACTAGCGATGTAACATCTTC+TGG | + | chr4.4:4181262-4181281 | MS.gene20187:CDS | 40.0% | |
| ACTTACCTAATGGTCTGTTG+AGG | - | chr4.4:4179763-4179782 | None:intergenic | 40.0% | |
| AGATGGAGGAAATGTTGGAT+CGG | - | chr4.4:4177961-4177980 | None:intergenic | 40.0% | |
| AGATTGTGGAAACTAGGCTT+AGG | + | chr4.4:4179091-4179110 | MS.gene20187:intron | 40.0% | |
| ATACAAAAGGAGGAAAGTGG+AGG | - | chr4.4:4178392-4178411 | None:intergenic | 40.0% | |
| ATACTAATGCCCCTCATCAT+GGG | - | chr4.4:4181630-4181649 | None:intergenic | 40.0% | |
| ATCTCAATCTTGTACCCCAA+TGG | + | chr4.4:4182651-4182670 | MS.gene20187:CDS | 40.0% | |
| ATGACAACATTGGAGAGAGT+TGG | + | chr4.4:4179048-4179067 | MS.gene20187:intron | 40.0% | |
| ATGTTGTCAATAACGGTCGT+GGG | - | chr4.4:4180469-4180488 | None:intergenic | 40.0% | |
| ATTGATGGAGACGTTACCAT+TGG | + | chr4.4:4181789-4181808 | MS.gene20187:CDS | 40.0% | |
| ATTTATCGGGATGTTGGTAC+GGG | + | chr4.4:4177565-4177584 | MS.gene20187:intron | 40.0% | |
| CAAAACTGTATCCCATGATG+AGG | + | chr4.4:4181616-4181635 | MS.gene20187:intron | 40.0% | |
| CAATGCACTAGTAAGGGATT+TGG | - | chr4.4:4181147-4181166 | None:intergenic | 40.0% | |
| CAGATAGATTTGTCCCAGTT+TGG | + | chr4.4:4182092-4182111 | MS.gene20187:CDS | 40.0% | |
| CCACTTCAACTAAAAACCAG+CGG | - | chr4.4:4177050-4177069 | None:intergenic | 40.0% | |
| CGTGTCACATAAAACACATG+AGG | - | chr4.4:4178858-4178877 | None:intergenic | 40.0% | |
| CGTTGTTTAGCACTATGGAA+TGG | - | chr4.4:4178775-4178794 | None:intergenic | 40.0% | |
| CTACTTGGATTCATCCATTG+GGG | - | chr4.4:4182668-4182687 | None:intergenic | 40.0% | |
| CTCCAATCTAGTGTGTTGTA+GGG | + | chr4.4:4182226-4182245 | MS.gene20187:intron | 40.0% | |
| CTCTCGTTGTGTGTCTATTA+TGG | + | chr4.4:4178294-4178313 | MS.gene20187:intron | 40.0% | |
| CTGTGTGAATTTAGGTACAG+TGG | - | chr4.4:4178619-4178638 | None:intergenic | 40.0% | |
| GACATACAAAAGGAGGAAAG+TGG | - | chr4.4:4178395-4178414 | None:intergenic | 40.0% | |
| GAGATTATTACCTGGATTGC+AGG | - | chr4.4:4176623-4176642 | None:intergenic | 40.0% | |
| GATTACCTCAACAGACCATT+AGG | + | chr4.4:4179755-4179774 | MS.gene20187:CDS | 40.0% | |
| GCAACCTTTCAAAGTGACAT+AGG | + | chr4.4:4180858-4180877 | MS.gene20187:intron | 40.0% | |
| GCATTAGTATGCAGTTTGAC+GGG | + | chr4.4:4181640-4181659 | MS.gene20187:intron | 40.0% | |
| GCTGGTAAAATGTCACTAGA+GGG | + | chr4.4:4176858-4176877 | MS.gene20187:CDS | 40.0% | |
| GGCATTAGTATGCAGTTTGA+CGG | + | chr4.4:4181639-4181658 | MS.gene20187:intron | 40.0% | |
| GTGTGTTTCAAAGGGTAAGT+TGG | - | chr4.4:4178077-4178096 | None:intergenic | 40.0% | |
| GTGTTTCAAAGGGTAAGTTG+GGG | - | chr4.4:4178075-4178094 | None:intergenic | 40.0% | |
| TCTCATCCAGGTACTTAGTT+TGG | + | chr4.4:4181040-4181059 | MS.gene20187:intron | 40.0% | |
| TCTCCAATCTAGTGTGTTGT+AGG | + | chr4.4:4182225-4182244 | MS.gene20187:intron | 40.0% | |
| TGACAACATTGGAGAGAGTT+GGG | + | chr4.4:4179049-4179068 | MS.gene20187:intron | 40.0% | |
| TGACTCGTCGTAGAATTGAT+AGG | + | chr4.4:4177223-4177242 | MS.gene20187:intron | 40.0% | |
| TGCTCAAAAATAGCCTCGTT+CGG | - | chr4.4:4179429-4179448 | None:intergenic | 40.0% | |
| TGCTGGTAAAATGTCACTAG+AGG | + | chr4.4:4176857-4176876 | MS.gene20187:CDS | 40.0% | |
| TGGAGATCTGCCAATTTAAC+TGG | - | chr4.4:4181289-4181308 | None:intergenic | 40.0% | |
| TGTAACTTATTACCTGCAGC+AGG | - | chr4.4:4181334-4181353 | None:intergenic | 40.0% | |
| TGTAGTGTAGGAGTGGTTAT+AGG | - | chr4.4:4177350-4177369 | None:intergenic | 40.0% | |
| TGTTGGATCGGTCAAATAGT+TGG | - | chr4.4:4177949-4177968 | None:intergenic | 40.0% | |
| TTCAGAAACTTCAAGCGGAA+GGG | - | chr4.4:4181001-4181020 | None:intergenic | 40.0% | |
| TTCCAACTTTCACAAAGTGC+AGG | - | chr4.4:4178708-4178727 | None:intergenic | 40.0% | |
| TTCCATTTGGTATACGGTAG+AGG | + | chr4.4:4182282-4182301 | MS.gene20187:intron | 40.0% | |
| TTCCTGCACTTTGTGAAAGT+TGG | + | chr4.4:4178703-4178722 | MS.gene20187:intron | 40.0% | |
| TTCTCCGTTGTTTAGCACTA+TGG | - | chr4.4:4178780-4178799 | None:intergenic | 40.0% | |
| TTGAAGATGACATCTCATCC+AGG | + | chr4.4:4181028-4181047 | MS.gene20187:CDS | 40.0% | |
| ! | AATGGTAACGTCTCCATCAA+TGG | - | chr4.4:4181790-4181809 | None:intergenic | 40.0% |
| ! | AGCGTGTTACTCTTTACTTC+TGG | - | chr4.4:4180925-4180944 | None:intergenic | 40.0% |
| ! | CAAACTTTTAGTGTCCAGTC+AGG | - | chr4.4:4181186-4181205 | None:intergenic | 40.0% |
| ! | CAACAGAGCATTATGGCATA+TGG | - | chr4.4:4177840-4177859 | None:intergenic | 40.0% |
| ! | TCTAGCTTCCTATTTACCAG+AGG | + | chr4.4:4181819-4181838 | MS.gene20187:CDS | 40.0% |
| ! | TCTGATTTGTAGTGTAGGAG+TGG | - | chr4.4:4177357-4177376 | None:intergenic | 40.0% |
| ! | TTAGGTGATTCGGAAATGTG+TGG | - | chr4.4:4178020-4178039 | None:intergenic | 40.0% |
| ! | TTTGCTTTCTAGTACTGGAG+TGG | + | chr4.4:4182320-4182339 | MS.gene20187:intron | 40.0% |
| !! | AAAGTACTGCTCAAGCTGAA+TGG | + | chr4.4:4178878-4178897 | MS.gene20187:intron | 40.0% |
| !! | AAGATGTTGAGTTGGATGTG+TGG | + | chr4.4:4178999-4179018 | MS.gene20187:intron | 40.0% |
| !! | CACAGTTTTGTCTTTTCTGG+AGG | + | chr4.4:4182570-4182589 | MS.gene20187:CDS | 40.0% |
| !! | CGTTTGTTATGTCTGTTGAC+AGG | + | chr4.4:4176815-4176834 | MS.gene20187:intron | 40.0% |
| !!! | AGGGACTAGTTCATTTTCAG+TGG | + | chr4.4:4177092-4177111 | MS.gene20187:CDS | 40.0% |
| !!! | CTGATTCTTTGTTTTCCCCT+TGG | + | chr4.4:4182537-4182556 | MS.gene20187:intron | 40.0% |
| !!! | GAAGTGGTTGTTTTTGTCTC+AGG | + | chr4.4:4177063-4177082 | MS.gene20187:intron | 40.0% |
| AAACAGACTCACGCATCTGT+AGG | - | chr4.4:4180013-4180032 | None:intergenic | 45.0% | |
| AACTGTGAACTTGTCTGCCA+AGG | - | chr4.4:4182557-4182576 | None:intergenic | 45.0% | |
| AACTTGGTTGTCCCGAACTT+TGG | + | chr4.4:4181229-4181248 | MS.gene20187:CDS | 45.0% | |
| AATAGAGGTCAGGAAAGAGC+AGG | - | chr4.4:4179277-4179296 | None:intergenic | 45.0% | |
| ACTGTGAACTTGTCTGCCAA+GGG | - | chr4.4:4182556-4182575 | None:intergenic | 45.0% | |
| AGCATTCTTGATCCTGACGA+AGG | + | chr4.4:4181429-4181448 | MS.gene20187:CDS | 45.0% | |
| AGCCTCTACCGTATACCAAA+TGG | - | chr4.4:4182287-4182306 | None:intergenic | 45.0% | |
| AGGACCTATGGAAACTGTTG+GGG | + | chr4.4:4178479-4178498 | MS.gene20187:intron | 45.0% | |
| ATGGGGCCACCATAATCAAA+TGG | - | chr4.4:4180626-4180645 | None:intergenic | 45.0% | |
| CAGGACCTATGGAAACTGTT+GGG | + | chr4.4:4178478-4178497 | MS.gene20187:intron | 45.0% | |
| CATACTAATGCCCCTCATCA+TGG | - | chr4.4:4181631-4181650 | None:intergenic | 45.0% | |
| CATCAGGTTCTTCTTCACCA+AGG | - | chr4.4:4180975-4180994 | None:intergenic | 45.0% | |
| CCATAGTAGAGTTGAGCAGA+TGG | - | chr4.4:4177978-4177997 | None:intergenic | 45.0% | |
| CCATCTGCTCAACTCTACTA+TGG | + | chr4.4:4177975-4177994 | MS.gene20187:intron | 45.0% | |
| CGGTCAAATAGTTGGAGGTA+GGG | - | chr4.4:4177941-4177960 | None:intergenic | 45.0% | |
| CTTCAGAAACTTCAAGCGGA+AGG | - | chr4.4:4181002-4181021 | None:intergenic | 45.0% | |
| GAAACTAGGCTTAGGTGGTT+TGG | + | chr4.4:4179099-4179118 | MS.gene20187:intron | 45.0% | |
| GACAACATTGGAGAGAGTTG+GGG | + | chr4.4:4179050-4179069 | MS.gene20187:intron | 45.0% | |
| GGAATCTAGGCAAGATGATC+AGG | + | chr4.4:4182621-4182640 | MS.gene20187:CDS | 45.0% | |
| GGAGAAGTAACAACTACAGC+TGG | - | chr4.4:4182210-4182229 | None:intergenic | 45.0% | |
| GGTACTCGTCTTAGGTGATT+CGG | - | chr4.4:4178030-4178049 | None:intergenic | 45.0% | |
| GTCCCTACAACACACTAGAT+TGG | - | chr4.4:4182231-4182250 | None:intergenic | 45.0% | |
| GTTGCATCCACACCAAAGTT+CGG | - | chr4.4:4181244-4181263 | None:intergenic | 45.0% | |
| GTTGGAAAGAGCTGCAAACT+TGG | + | chr4.4:4181213-4181232 | MS.gene20187:intron | 45.0% | |
| GTTGTACGAGACAGTGTTCT+AGG | + | chr4.4:4178932-4178951 | MS.gene20187:intron | 45.0% | |
| TAGTAGAGTTGAGCAGATGG+AGG | - | chr4.4:4177975-4177994 | None:intergenic | 45.0% | |
| TATCCGGTGCAAGTACATAC+CGG | - | chr4.4:4180244-4180263 | None:intergenic | 45.0% | |
| TCCTGACGAAGGTAATCACT+TGG | + | chr4.4:4181440-4181459 | MS.gene20187:intron | 45.0% | |
| TCGGTCAAATAGTTGGAGGT+AGG | - | chr4.4:4177942-4177961 | None:intergenic | 45.0% | |
| TCTCCAAGTCTGAGGAATCT+AGG | + | chr4.4:4182608-4182627 | MS.gene20187:CDS | 45.0% | |
| TGAGCAGATGGAGGAAATGT+TGG | - | chr4.4:4177966-4177985 | None:intergenic | 45.0% | |
| TGGATCGGTCAAATAGTTGG+AGG | - | chr4.4:4177946-4177965 | None:intergenic | 45.0% | |
| TTCTCACTAACAGAGCTCCT+TGG | + | chr4.4:4180955-4180974 | MS.gene20187:intron | 45.0% | |
| TTCTTCTTCTGGATGCAGGT+TGG | + | chr4.4:4179591-4179610 | MS.gene20187:intron | 45.0% | |
| TTCTTGACCTAAGCCAACAC+AGG | + | chr4.4:4179389-4179408 | MS.gene20187:intron | 45.0% | |
| TTGCATCCACACCAAAGTTC+GGG | - | chr4.4:4181243-4181262 | None:intergenic | 45.0% | |
| TTGCCTAGATTCCTCAGACT+TGG | - | chr4.4:4182614-4182633 | None:intergenic | 45.0% | |
| TTGTGGAAACTAGGCTTAGG+TGG | + | chr4.4:4179094-4179113 | MS.gene20187:intron | 45.0% | |
| ! | AACCATACAGGGTGCTTATC+CGG | - | chr4.4:4180260-4180279 | None:intergenic | 45.0% |
| ! | AAGCCTTGTCCTACTAAGTG+GGG | - | chr4.4:4179226-4179245 | None:intergenic | 45.0% |
| ! | CAAGCCTTGTCCTACTAAGT+GGG | - | chr4.4:4179227-4179246 | None:intergenic | 45.0% |
| ! | GAATCTACTTGCTGACGGAA+AGG | - | chr4.4:4181964-4181983 | None:intergenic | 45.0% |
| ! | TTTTACCAGCACGAAACTCC+AGG | - | chr4.4:4176848-4176867 | None:intergenic | 45.0% |
| ! | TTTTTGTCTCAGGGTGAGGA+GGG | + | chr4.4:4177073-4177092 | MS.gene20187:intron | 45.0% |
| !! | ATCTGATCCTGTGTTGGCTT+AGG | - | chr4.4:4179399-4179418 | None:intergenic | 45.0% |
| !! | TCGTATTTGGTGTGTTCCCA+TGG | + | chr4.4:4177617-4177636 | MS.gene20187:intron | 45.0% |
| !!! | CCGCTGGTTTTTAGTTGAAG+TGG | + | chr4.4:4177047-4177066 | MS.gene20187:intron | 45.0% |
| !!! | GAACGAGGCTATTTTTGAGC+AGG | + | chr4.4:4179428-4179447 | MS.gene20187:CDS | 45.0% |
| !!! | GTTGTTTTTGTCTCAGGGTG+AGG | + | chr4.4:4177069-4177088 | MS.gene20187:intron | 45.0% |
| AAGGACTCGTTCGCATTGCT+AGG | + | chr4.4:4176907-4176926 | MS.gene20187:CDS | 50.0% | |
| ACTTCCATCCCAGATCTTCC+TGG | - | chr4.4:4176760-4176779 | None:intergenic | 50.0% | |
| AGAATTGCAGGATCGTCCAC+TGG | - | chr4.4:4179843-4179862 | None:intergenic | 50.0% | |
| AGGACTCGTTCGCATTGCTA+GGG | + | chr4.4:4176908-4176927 | MS.gene20187:CDS | 50.0% | |
| CAACCCCACTTAGTAGGACA+AGG | + | chr4.4:4179220-4179239 | MS.gene20187:intron | 50.0% | |
| CCACTTAGTAGGACAAGGCT+TGG | + | chr4.4:4179225-4179244 | MS.gene20187:intron | 50.0% | |
| CCTATGGAAACTGTTGGGGA+AGG | + | chr4.4:4178483-4178502 | MS.gene20187:intron | 50.0% | |
| CCTTCCCCAACAGTTTCCAT+AGG | - | chr4.4:4178486-4178505 | None:intergenic | 50.0% | |
| CGCTCGCTCTTTGCGTTTAT+TGG | + | chr4.4:4176673-4176692 | MS.gene20187:intron | 50.0% | |
| CTAAAAACCAGCGGCAGTCA+TGG | - | chr4.4:4177041-4177060 | None:intergenic | 50.0% | |
| CTGTGAACTTGTCTGCCAAG+GGG | - | chr4.4:4182555-4182574 | None:intergenic | 50.0% | |
| CTGTTGACAGGAAACTCTCC+TGG | + | chr4.4:4176827-4176846 | MS.gene20187:intron | 50.0% | |
| CTTGTCCTACTAAGTGGGGT+TGG | - | chr4.4:4179222-4179241 | None:intergenic | 50.0% | |
| GCAGGACCTATGGAAACTGT+TGG | + | chr4.4:4178477-4178496 | MS.gene20187:intron | 50.0% | |
| GCCAAGTGATTACCTTCGTC+AGG | - | chr4.4:4181444-4181463 | None:intergenic | 50.0% | |
| GGATTCTGTCTCCAAGTCTG+AGG | + | chr4.4:4182600-4182619 | MS.gene20187:CDS | 50.0% | |
| GTAGTTCCTGATGCACGCAA+AGG | + | chr4.4:4176888-4176907 | MS.gene20187:CDS | 50.0% | |
| TAAGCCAGGAAGATCTGGGA+TGG | + | chr4.4:4176753-4176772 | MS.gene20187:intron | 50.0% | |
| TCAAGCGGAAGGGATACATC+AGG | - | chr4.4:4180991-4181010 | None:intergenic | 50.0% | |
| TGTAGCCAACCCCACTTAGT+AGG | + | chr4.4:4179214-4179233 | MS.gene20187:intron | 50.0% | |
| TGTAGGTTTCAGGCGTGTGT+AGG | + | chr4.4:4182402-4182421 | MS.gene20187:intron | 50.0% | |
| TTGCTGCAGGTACTTCGAAC+AGG | + | chr4.4:4182068-4182087 | MS.gene20187:intron | 50.0% | |
| ! | ACGTGTAAGCCTTATGCCAG+TGG | + | chr4.4:4179824-4179843 | MS.gene20187:intron | 50.0% |
| ! | CCAAGCCTTGTCCTACTAAG+TGG | - | chr4.4:4179228-4179247 | None:intergenic | 50.0% |
| ! | CTACTTGCTGACGGAAAGGT+GGG | - | chr4.4:4181960-4181979 | None:intergenic | 50.0% |
| ! | GTAGGACAAGGCTTGGTTGT+TGG | + | chr4.4:4179232-4179251 | MS.gene20187:intron | 50.0% |
| ! | GTTTTTGTCTCAGGGTGAGG+AGG | + | chr4.4:4177072-4177091 | MS.gene20187:intron | 50.0% |
| ! | TCTACTTGCTGACGGAAAGG+TGG | - | chr4.4:4181961-4181980 | None:intergenic | 50.0% |
| !! | AAGTACATACCGGCTCTACG+TGG | - | chr4.4:4180234-4180253 | None:intergenic | 50.0% |
| !! | AGTACATACCGGCTCTACGT+GGG | - | chr4.4:4180233-4180252 | None:intergenic | 50.0% |
| !! | AGTGGAGGAGTGTTGTTGCA+AGG | - | chr4.4:4178377-4178396 | None:intergenic | 50.0% |
| !! | GATTGCAGGAAAAGCGTCGA+TGG | - | chr4.4:4176609-4176628 | None:intergenic | 50.0% |
| !! | GTCTTTTCTGGAGGCTCTTG+AGG | + | chr4.4:4182579-4182598 | MS.gene20187:CDS | 50.0% |
| !! | GTGGAGGAGTGTTGTTGCAA+GGG | - | chr4.4:4178376-4178395 | None:intergenic | 50.0% |
| !! | TGGAGGAGTGTTGTTGCAAG+GGG | - | chr4.4:4178375-4178394 | None:intergenic | 50.0% |
| ACGAGTCCTTTGCGTGCATC+AGG | - | chr4.4:4176897-4176916 | None:intergenic | 55.0% | |
| ACTCTCCTGGAGTTTCGTGC+TGG | + | chr4.4:4176840-4176859 | MS.gene20187:CDS | 55.0% | |
| AGCAACATTGGACCTGCTGC+AGG | + | chr4.4:4181319-4181338 | MS.gene20187:CDS | 55.0% | |
| ATCTCAACCATGACTGCCGC+TGG | + | chr4.4:4177031-4177050 | MS.gene20187:intron | 55.0% | |
| ATTGGGTACCCACGTAGAGC+CGG | + | chr4.4:4180222-4180241 | MS.gene20187:intron | 55.0% | |
| CACCGGATAAGCACCCTGTA+TGG | + | chr4.4:4180255-4180274 | MS.gene20187:intron | 55.0% | |
| CAGGATCGTCCACTGGCATA+AGG | - | chr4.4:4179836-4179855 | None:intergenic | 55.0% | |
| GAAGCTAGACGCTGCTCCAA+TGG | - | chr4.4:4181808-4181827 | None:intergenic | 55.0% | |
| GAGCCGGTATGTACTTGCAC+CGG | + | chr4.4:4180238-4180257 | MS.gene20187:intron | 55.0% | |
| GGTTGTCCCGAACTTTGGTG+TGG | + | chr4.4:4181234-4181253 | MS.gene20187:CDS | 55.0% | |
| ! | CGACGCTTTTCCTGCAATCC+AGG | + | chr4.4:4176610-4176629 | MS.gene20187:CDS | 55.0% |
| !! | GGAGGAGTGTTGTTGCAAGG+GGG | - | chr4.4:4178374-4178393 | None:intergenic | 55.0% |
| GAGCGAGCGAGCGAGCGAAA+AGG | - | chr4.4:4176662-4176681 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4176593 | 4182687 | 4176593 | ID=MS.gene20187 |
| chr4.4 | mRNA | 4176593 | 4182687 | 4176593 | ID=MS.gene20187.t1;Parent=MS.gene20187 |
| chr4.4 | exon | 4176593 | 4176631 | 4176593 | ID=MS.gene20187.t1.exon1;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4176593 | 4176631 | 4176593 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4176837 | 4176929 | 4176837 | ID=MS.gene20187.t1.exon2;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4176837 | 4176929 | 4176837 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4177085 | 4177144 | 4177085 | ID=MS.gene20187.t1.exon3;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4177085 | 4177144 | 4177085 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4179411 | 4179449 | 4179411 | ID=MS.gene20187.t1.exon4;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4179411 | 4179449 | 4179411 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4179534 | 4179608 | 4179534 | ID=MS.gene20187.t1.exon5;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4179534 | 4179608 | 4179534 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4179710 | 4179776 | 4179710 | ID=MS.gene20187.t1.exon6;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4179710 | 4179776 | 4179710 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4180968 | 4181049 | 4180968 | ID=MS.gene20187.t1.exon7;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4180968 | 4181049 | 4180968 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4181222 | 4181340 | 4181222 | ID=MS.gene20187.t1.exon8;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4181222 | 4181340 | 4181222 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4181427 | 4181450 | 4181427 | ID=MS.gene20187.t1.exon9;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4181427 | 4181450 | 4181427 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4181746 | 4181840 | 4181746 | ID=MS.gene20187.t1.exon10;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4181746 | 4181840 | 4181746 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4181916 | 4181993 | 4181916 | ID=MS.gene20187.t1.exon11;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4181916 | 4181993 | 4181916 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4182077 | 4182131 | 4182077 | ID=MS.gene20187.t1.exon12;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4182077 | 4182131 | 4182077 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| chr4.4 | exon | 4182563 | 4182687 | 4182563 | ID=MS.gene20187.t1.exon13;Parent=MS.gene20187.t1 |
| chr4.4 | CDS | 4182563 | 4182687 | 4182563 | ID=cds.MS.gene20187.t1;Parent=MS.gene20187.t1 |
| Gene Sequence |
| Protein sequence |
