Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058722.t1 | XP_003624160.1 | 97.7 | 172 | 3 | 1 | 1 | 171 | 1 | 172 | 1.60E-87 | 332 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058722.t1 | Q9FFD5 | 44.8 | 165 | 71 | 6 | 1 | 163 | 1 | 147 | 8.2e-24 | 111.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058722.t1 | Q2HW10 | 97.7 | 172 | 3 | 1 | 1 | 171 | 1 | 172 | 1.2e-87 | 332.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058722 | MS.gene066834 | 0.805936 | 1.05E-49 | -1.69E-46 |
MS.gene058722 | MS.gene29957 | 0.821397 | 4.13E-53 | -1.69E-46 |
MS.gene058722 | MS.gene51169 | 0.981521 | 8.58E-153 | -1.69E-46 |
MS.gene058722 | MS.gene53249 | 0.829163 | 6.00E-55 | -1.69E-46 |
MS.gene058722 | MS.gene53280 | 0.81961 | 1.06E-52 | -1.69E-46 |
MS.gene058722 | MS.gene57477 | 0.802564 | 5.28E-49 | -1.69E-46 |
MS.gene058722 | MS.gene68650 | 0.805151 | 1.53E-49 | -1.69E-46 |
MS.gene058722 | MS.gene68652 | 0.807307 | 5.39E-50 | -1.69E-46 |
MS.gene058722 | MS.gene75603 | 0.815892 | 7.32E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058722.t1 | MTR_7g079870 | 97.674 | 172 | 3 | 1 | 1 | 171 | 1 | 172 | 4.39e-122 | 341 |
MS.gene058722.t1 | MTR_7g021660 | 41.139 | 158 | 79 | 5 | 1 | 156 | 1 | 146 | 2.49e-28 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058722.t1 | AT5G16490 | 48.052 | 154 | 64 | 6 | 1 | 152 | 1 | 140 | 6.67e-31 | 109 |
MS.gene058722.t1 | AT1G27380 | 34.416 | 154 | 69 | 4 | 1 | 129 | 1 | 147 | 2.05e-16 | 72.8 |
Find 42 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGGAGATGTTTCATGTTT+TGG | 0.253272 | 7.4:+26263134 | None:intergenic |
GATGAAATGGACATGGAAAT+AGG | 0.297095 | 7.4:-26263296 | MS.gene058722:CDS |
GTCATTCTTCCTTTCTCAGC+TGG | 0.335866 | 7.4:-26264849 | MS.gene058722:CDS |
TTGAAGGATAGGTTAGGCTT+TGG | 0.378556 | 7.4:+26263954 | None:intergenic |
GGACTTAGAAGAAGATGAAA+TGG | 0.383098 | 7.4:-26263309 | MS.gene058722:CDS |
AGAGAATCCCATCCCCTCAT+TGG | 0.414199 | 7.4:+26263200 | None:intergenic |
TCAATTAATCAAGCAATAGA+AGG | 0.417530 | 7.4:+26263101 | None:intergenic |
GCCTTTGAACAACTTGTTGA+AGG | 0.426359 | 7.4:+26263938 | None:intergenic |
ATGAAATGGACATGGAAATA+GGG | 0.448347 | 7.4:-26263295 | MS.gene058722:CDS |
GAGGATTCAGAGACTTTGTC+TGG | 0.450700 | 7.4:-26264017 | MS.gene058722:CDS |
AATAGAAGGCATGATGTTGA+TGG | 0.460773 | 7.4:+26263115 | None:intergenic |
AACATGTGACACACATTGGT+TGG | 0.460995 | 7.4:-26263256 | MS.gene058722:CDS |
TGAACAACTTGTTGAAGGAT+AGG | 0.476710 | 7.4:+26263943 | None:intergenic |
TGTGGTGAATTAGTCTCTGC+AGG | 0.479443 | 7.4:+26264771 | None:intergenic |
GAGAATCCCATCCCCTCATT+GGG | 0.490983 | 7.4:+26263201 | None:intergenic |
ATAAGATTAGAAGGATCTAA+AGG | 0.496998 | 7.4:-26264044 | MS.gene058722:intron |
CTCATGACCCAATGAGGGGA+TGG | 0.511835 | 7.4:-26263208 | MS.gene058722:CDS |
GAGGCTACAGAGAGAAGCTC+AGG | 0.512955 | 7.4:+26263170 | None:intergenic |
AGAAAGTATGAGACAGAGAA+TGG | 0.521813 | 7.4:-26264880 | None:intergenic |
TCCTTCAACAAGTTGTTCAA+AGG | 0.523718 | 7.4:-26263939 | MS.gene058722:CDS |
GTCACATGTTGTACATCTGT+TGG | 0.530235 | 7.4:+26263269 | None:intergenic |
TCACATGTTGTACATCTGTT+GGG | 0.533947 | 7.4:+26263270 | None:intergenic |
GAGATACAACCAGCTGAGAA+AGG | 0.537814 | 7.4:+26264840 | None:intergenic |
TCTGAGGCTAGTGTTGCTGT+TGG | 0.544954 | 7.4:-26264819 | MS.gene058722:CDS |
AAAGTATGAAGAATTCTTTG+AGG | 0.549357 | 7.4:-26263992 | MS.gene058722:CDS |
ACATGTGACACACATTGGTT+GGG | 0.559436 | 7.4:-26263255 | MS.gene058722:CDS |
TCATGACCCAATGAGGGGAT+GGG | 0.567190 | 7.4:-26263207 | MS.gene058722:CDS |
CTCAGCTGGTTGTATCTCTG+AGG | 0.578716 | 7.4:-26264835 | MS.gene058722:CDS |
ATAGAAGGCATGATGTTGAT+GGG | 0.591363 | 7.4:+26263116 | None:intergenic |
AACTTGTTGAAGGATAGGTT+AGG | 0.593453 | 7.4:+26263948 | None:intergenic |
GCTACAGAGAGAAGCTCAGG+AGG | 0.604067 | 7.4:+26263173 | None:intergenic |
TGGGTCATGAGCAGCACATG+AGG | 0.609467 | 7.4:+26263220 | None:intergenic |
GTGACACACATTGGTTGGGA+TGG | 0.614285 | 7.4:-26263251 | MS.gene058722:CDS |
TGCTGCTCATGACCCAATGA+GGG | 0.614602 | 7.4:-26263213 | MS.gene058722:CDS |
TAATTCAGTGGAGAAAGAAG+AGG | 0.620308 | 7.4:-26263330 | MS.gene058722:intron |
GTATGAGACAGAGAATGGAA+AGG | 0.630032 | 7.4:-26264875 | MS.gene058722:CDS |
AGAAGAAGATGAAATGGACA+TGG | 0.630572 | 7.4:-26263303 | MS.gene058722:CDS |
AGAAGGATCTAAAGGAGTCG+AGG | 0.632435 | 7.4:-26264036 | MS.gene058722:CDS |
AAGAGACTTATTGCATCATG+TGG | 0.639239 | 7.4:+26264753 | None:intergenic |
GTGCTGCTCATGACCCAATG+AGG | 0.658635 | 7.4:-26263214 | MS.gene058722:CDS |
GCTGCTCATGACCCAATGAG+GGG | 0.751010 | 7.4:-26263212 | MS.gene058722:CDS |
GTACAACATGTGACACACAT+TGG | 0.753481 | 7.4:-26263260 | MS.gene058722:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATAATAAAAATAAAATTGT+AGG | - | chr7.4:26264534-26264553 | MS.gene058722:intron | 10.0% |
!! | TCTTTGTAAATAAAAATATA+TGG | - | chr7.4:26264581-26264600 | MS.gene058722:intron | 10.0% |
!!! | ATTCTAAAAATGTTTATTTA+GGG | + | chr7.4:26264258-26264277 | None:intergenic | 10.0% |
!! | AATATATGTTTAATAGAGAA+TGG | + | chr7.4:26263704-26263723 | None:intergenic | 15.0% |
!!! | CATTCTAAAAATGTTTATTT+AGG | + | chr7.4:26264259-26264278 | None:intergenic | 15.0% |
!!! | TTCTCTAATTTTTAATTAGT+TGG | - | chr7.4:26263845-26263864 | MS.gene058722:intron | 15.0% |
!!! | TTTTTCTTTTTTGAAAGTTA+CGG | + | chr7.4:26263814-26263833 | None:intergenic | 15.0% |
!!! | TTTTTTTATGTTTAATTCAG+TGG | - | chr7.4:26264640-26264659 | MS.gene058722:intron | 15.0% |
!! | ATGTATAAAAAAAAATGTCG+TGG | - | chr7.4:26263758-26263777 | MS.gene058722:intron | 20.0% |
!! | TACTAGCTAAATAAAACTAA+GGG | + | chr7.4:26263336-26263355 | None:intergenic | 20.0% |
!! | TGTATAAAAAAAAATGTCGT+GGG | - | chr7.4:26263759-26263778 | MS.gene058722:intron | 20.0% |
!! | TTACTAGCTAAATAAAACTA+AGG | + | chr7.4:26263337-26263356 | None:intergenic | 20.0% |
!!! | ATAAAATTGGGTTTAAGATA+AGG | + | chr7.4:26264401-26264420 | None:intergenic | 20.0% |
! | AAAGTATGAAGAATTCTTTG+AGG | - | chr7.4:26263990-26264009 | MS.gene058722:CDS | 25.0% |
! | ATAAGATTAGAAGGATCTAA+AGG | - | chr7.4:26263938-26263957 | MS.gene058722:CDS | 25.0% |
! | ATACAATAAATTTGACCATC+GGG | + | chr7.4:26263661-26263680 | None:intergenic | 25.0% |
! | CATACAATAAATTTGACCAT+CGG | + | chr7.4:26263662-26263681 | None:intergenic | 25.0% |
! | GATATCATAGTAAAAGAGAT+AGG | + | chr7.4:26263255-26263274 | None:intergenic | 25.0% |
! | GATGATATGATAAGATTAGA+AGG | - | chr7.4:26263929-26263948 | MS.gene058722:CDS | 25.0% |
! | GTATAAAAAAAAATGTCGTG+GGG | - | chr7.4:26263760-26263779 | MS.gene058722:intron | 25.0% |
! | TGAATTTAGTCATTCGATAA+AGG | - | chr7.4:26263421-26263440 | MS.gene058722:intron | 25.0% |
! | TGTTTAATAGAGAATGGAAA+AGG | + | chr7.4:26263698-26263717 | None:intergenic | 25.0% |
!! | AAGAACTTTTCTCAATTGTT+TGG | - | chr7.4:26264070-26264089 | MS.gene058722:intron | 25.0% |
!! | ATGGAAGTCTTAATTTTTCA+TGG | - | chr7.4:26264600-26264619 | MS.gene058722:intron | 25.0% |
!! | GTTTTCTCATACTAATTTTG+TGG | - | chr7.4:26264111-26264130 | MS.gene058722:intron | 25.0% |
!! | TAAACCCAATTTTATAGAGT+CGG | - | chr7.4:26264406-26264425 | MS.gene058722:intron | 25.0% |
!! | TTTAAGATAAGGAAAGTTAG+AGG | + | chr7.4:26264390-26264409 | None:intergenic | 25.0% |
ATGAAATGGACATGGAAATA+GGG | - | chr7.4:26264687-26264706 | MS.gene058722:intron | 30.0% | |
CATTCCGACTCTATAAAATT+GGG | + | chr7.4:26264413-26264432 | None:intergenic | 30.0% | |
CTCGATCATCTCAATATATA+AGG | - | chr7.4:26264290-26264309 | MS.gene058722:intron | 30.0% | |
GAAGAAATACGTGTCAATAA+TGG | - | chr7.4:26264330-26264349 | MS.gene058722:intron | 30.0% | |
TACGGAACGAAATAAAAACA+CGG | + | chr7.4:26264200-26264219 | None:intergenic | 30.0% | |
TATCAATCAACTTCATCCAA+CGG | + | chr7.4:26263579-26263598 | None:intergenic | 30.0% | |
TCATCTCAATATATAAGGTG+TGG | - | chr7.4:26264295-26264314 | MS.gene058722:intron | 30.0% | |
TCTCATACCTATACTTGTTT+GGG | + | chr7.4:26263736-26263755 | None:intergenic | 30.0% | |
TTCTCATACCTATACTTGTT+TGG | + | chr7.4:26263737-26263756 | None:intergenic | 30.0% | |
TTGCGATCAAAACTTCTATA+CGG | + | chr7.4:26264218-26264237 | None:intergenic | 30.0% | |
AAGAGACTTATTGCATCATG+TGG | + | chr7.4:26263232-26263251 | None:intergenic | 35.0% | |
AGAAGAAGATGAAATGGACA+TGG | - | chr7.4:26264679-26264698 | MS.gene058722:intron | 35.0% | |
AGATAAGGAAAGTTAGAGGT+AGG | + | chr7.4:26264386-26264405 | None:intergenic | 35.0% | |
ATAAGGAAAGTTAGAGGTAG+GGG | + | chr7.4:26264384-26264403 | None:intergenic | 35.0% | |
CCATTCCGACTCTATAAAAT+TGG | + | chr7.4:26264414-26264433 | None:intergenic | 35.0% | |
CTCATACCTATACTTGTTTG+GGG | + | chr7.4:26263735-26263754 | None:intergenic | 35.0% | |
GATAAGGAAAGTTAGAGGTA+GGG | + | chr7.4:26264385-26264404 | None:intergenic | 35.0% | |
GATGAAATGGACATGGAAAT+AGG | - | chr7.4:26264686-26264705 | MS.gene058722:intron | 35.0% | |
GGACTTAGAAGAAGATGAAA+TGG | - | chr7.4:26264673-26264692 | MS.gene058722:intron | 35.0% | |
TAATTCAGTGGAGAAAGAAG+AGG | - | chr7.4:26264652-26264671 | MS.gene058722:intron | 35.0% | |
TAGTCATTCGATAAAGGACT+TGG | - | chr7.4:26263427-26263446 | MS.gene058722:intron | 35.0% | |
TATGACAACATACCACCATA+TGG | + | chr7.4:26263508-26263527 | None:intergenic | 35.0% | |
TCACATGTTGTACATCTGTT+GGG | + | chr7.4:26264715-26264734 | None:intergenic | 35.0% | |
TCATACCTATACTTGTTTGG+GGG | + | chr7.4:26263734-26263753 | None:intergenic | 35.0% | |
TCCTTCAACAAGTTGTTCAA+AGG | - | chr7.4:26264043-26264062 | MS.gene058722:intron | 35.0% | |
TTGAGATGATCGAGACTAAA+AGG | + | chr7.4:26264284-26264303 | None:intergenic | 35.0% | |
! | AATAGAAGGCATGATGTTGA+TGG | + | chr7.4:26264870-26264889 | None:intergenic | 35.0% |
! | ATAGAAGGCATGATGTTGAT+GGG | + | chr7.4:26264869-26264888 | None:intergenic | 35.0% |
! | ATGGGAGATGTTTCATGTTT+TGG | + | chr7.4:26264851-26264870 | None:intergenic | 35.0% |
! | CCAATTTTATAGAGTCGGAA+TGG | - | chr7.4:26264411-26264430 | MS.gene058722:intron | 35.0% |
!! | AACTTGTTGAAGGATAGGTT+AGG | + | chr7.4:26264037-26264056 | None:intergenic | 35.0% |
!! | TGAACAACTTGTTGAAGGAT+AGG | + | chr7.4:26264042-26264061 | None:intergenic | 35.0% |
!! | TTTTGGCTGTAAAGATTGAG+AGG | + | chr7.4:26264834-26264853 | None:intergenic | 35.0% |
AAAGTTAGAGGTAGGGGAAA+TGG | + | chr7.4:26264378-26264397 | None:intergenic | 40.0% | |
AACATGTGACACACATTGGT+TGG | - | chr7.4:26264726-26264745 | MS.gene058722:intron | 40.0% | |
GTACAACATGTGACACACAT+TGG | - | chr7.4:26264722-26264741 | MS.gene058722:intron | 40.0% | |
GTCACATGTTGTACATCTGT+TGG | + | chr7.4:26264716-26264735 | None:intergenic | 40.0% | |
TTCTTCCCCCAAACAAGTAT+AGG | - | chr7.4:26263726-26263745 | MS.gene058722:intron | 40.0% | |
TTGAAGGATAGGTTAGGCTT+TGG | + | chr7.4:26264031-26264050 | None:intergenic | 40.0% | |
! | ACATGTGACACACATTGGTT+GGG | - | chr7.4:26264727-26264746 | MS.gene058722:intron | 40.0% |
!! | AAGAAAGTGTTGCCATATGG+TGG | - | chr7.4:26263493-26263512 | MS.gene058722:intron | 40.0% |
!! | CTGCAGGTTTTGATCTTCTT+GGG | + | chr7.4:26263198-26263217 | None:intergenic | 40.0% |
!! | GCCTTTGAACAACTTGTTGA+AGG | + | chr7.4:26264047-26264066 | None:intergenic | 40.0% |
!! | TCTGCAGGTTTTGATCTTCT+TGG | + | chr7.4:26263199-26263218 | None:intergenic | 40.0% |
!! | TGCAAGAAAGTGTTGCCATA+TGG | - | chr7.4:26263490-26263509 | MS.gene058722:intron | 40.0% |
!!! | AACGATGTATTTTGACCCGA+TGG | - | chr7.4:26263643-26263662 | MS.gene058722:intron | 40.0% |
AGAAGGATCTAAAGGAGTCG+AGG | - | chr7.4:26263946-26263965 | MS.gene058722:CDS | 45.0% | |
AGTCGGAATGGTGAGAAGAT+GGG | - | chr7.4:26264423-26264442 | MS.gene058722:intron | 45.0% | |
GAGATACAACCAGCTGAGAA+AGG | + | chr7.4:26263145-26263164 | None:intergenic | 45.0% | |
GAGGATTCAGAGACTTTGTC+TGG | - | chr7.4:26263965-26263984 | MS.gene058722:CDS | 45.0% | |
GTCATTCTTCCTTTCTCAGC+TGG | - | chr7.4:26263133-26263152 | MS.gene058722:CDS | 45.0% | |
! | TCAACTTCATCCAACGGACT+CGG | + | chr7.4:26263573-26263592 | None:intergenic | 45.0% |
! | TGTGGTGAATTAGTCTCTGC+AGG | + | chr7.4:26263214-26263233 | None:intergenic | 45.0% |
!! | GGTTTTGATCTTCTTGGGTG+TGG | + | chr7.4:26263193-26263212 | None:intergenic | 45.0% |
!! | AAAAGATATAAATTAATATA+TGG | + | chr7.4:26264138-26264157 | None:intergenic | 5.0% |
!!! | ATTGTATTTTAAATTTTATT+TGG | - | chr7.4:26263606-26263625 | MS.gene058722:intron | 5.0% |
AGAGAATCCCATCCCCTCAT+TGG | + | chr7.4:26264785-26264804 | None:intergenic | 50.0% | |
AGGACTTGGATTCTCTCCCA+CGG | - | chr7.4:26263441-26263460 | MS.gene058722:intron | 50.0% | |
CTCAGCTGGTTGTATCTCTG+AGG | - | chr7.4:26263147-26263166 | MS.gene058722:CDS | 50.0% | |
GAGAATCCCATCCCCTCATT+GGG | + | chr7.4:26264784-26264803 | None:intergenic | 50.0% | |
GAGTCGGAATGGTGAGAAGA+TGG | - | chr7.4:26264422-26264441 | MS.gene058722:intron | 50.0% | |
GATTCTCTCCCACGGTACAT+CGG | - | chr7.4:26263449-26263468 | MS.gene058722:intron | 50.0% | |
TCATGACCCAATGAGGGGAT+GGG | - | chr7.4:26264775-26264794 | MS.gene058722:CDS | 50.0% | |
TGCTGCTCATGACCCAATGA+GGG | - | chr7.4:26264769-26264788 | MS.gene058722:CDS | 50.0% | |
TTGGTGAGTATGCAAGCGTG+TGG | - | chr7.4:26264089-26264108 | MS.gene058722:intron | 50.0% | |
! | GTGACACACATTGGTTGGGA+TGG | - | chr7.4:26264731-26264750 | MS.gene058722:intron | 50.0% |
! | TCTGAGGCTAGTGTTGCTGT+TGG | - | chr7.4:26263163-26263182 | MS.gene058722:CDS | 50.0% |
! | TTGTTGCACCGATGTACCGT+GGG | + | chr7.4:26263460-26263479 | None:intergenic | 50.0% |
! | TTTGTTGCACCGATGTACCG+TGG | + | chr7.4:26263461-26263480 | None:intergenic | 50.0% |
CTCATGACCCAATGAGGGGA+TGG | - | chr7.4:26264774-26264793 | MS.gene058722:CDS | 55.0% | |
GAGAGAAGATCCGAGTCCGT+TGG | - | chr7.4:26263560-26263579 | MS.gene058722:intron | 55.0% | |
GAGGCTACAGAGAGAAGCTC+AGG | + | chr7.4:26264815-26264834 | None:intergenic | 55.0% | |
GCTACAGAGAGAAGCTCAGG+AGG | + | chr7.4:26264812-26264831 | None:intergenic | 55.0% | |
GCTGCTCATGACCCAATGAG+GGG | - | chr7.4:26264770-26264789 | MS.gene058722:CDS | 55.0% | |
TGGGTCATGAGCAGCACATG+AGG | + | chr7.4:26264765-26264784 | None:intergenic | 55.0% | |
! | GTGCTGCTCATGACCCAATG+AGG | - | chr7.4:26264768-26264787 | MS.gene058722:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 26263109 | 26264895 | 26263109 | ID=MS.gene058722 |
chr7.4 | mRNA | 26263109 | 26264895 | 26263109 | ID=MS.gene058722.t1;Parent=MS.gene058722 |
chr7.4 | exon | 26264760 | 26264895 | 26264760 | ID=MS.gene058722.t1.exon1;Parent=MS.gene058722.t1 |
chr7.4 | CDS | 26264760 | 26264895 | 26264760 | ID=cds.MS.gene058722.t1;Parent=MS.gene058722.t1 |
chr7.4 | exon | 26263913 | 26264056 | 26263913 | ID=MS.gene058722.t1.exon2;Parent=MS.gene058722.t1 |
chr7.4 | CDS | 26263913 | 26264056 | 26263913 | ID=cds.MS.gene058722.t1;Parent=MS.gene058722.t1 |
chr7.4 | exon | 26263109 | 26263344 | 26263109 | ID=MS.gene058722.t1.exon3;Parent=MS.gene058722.t1 |
chr7.4 | CDS | 26263109 | 26263344 | 26263109 | ID=cds.MS.gene058722.t1;Parent=MS.gene058722.t1 |
Gene Sequence |
Protein sequence |