Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68652.t1 | XP_013464042.1 | 96.8 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 1.30E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68652.t1 | Q56X72 | 56.9 | 267 | 112 | 2 | 2 | 267 | 173 | 437 | 6.5e-80 | 298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68652.t1 | A0A072V8B4 | 96.8 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 9.2e-168 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051328 | MS.gene68652 | 0.803748 | 3.01E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene68652 | 0.813433 | 2.57E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene68652 | 0.84684 | 1.69E-59 | -1.69E-46 |
| MS.gene053581 | MS.gene68652 | 0.816611 | 5.06E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene68652 | 0.838472 | 2.82E-57 | -1.69E-46 |
| MS.gene055144 | MS.gene68652 | 0.813143 | 2.97E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene68652 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene68652 | 0.813373 | 2.64E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene68652 | 0.810446 | 1.15E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene68652 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene68652 | -0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene056368 | MS.gene68652 | 0.802177 | 6.35E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene68652 | 0.805341 | 1.40E-49 | -1.69E-46 |
| MS.gene058722 | MS.gene68652 | 0.807307 | 5.39E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene68652 | 0.81088 | 9.25E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene68652 | 0.814683 | 1.36E-51 | -1.69E-46 |
| MS.gene058912 | MS.gene68652 | 0.810766 | 9.79E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene68652 | 0.801066 | 1.07E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028296 | MS.gene68652 | PPI |
| MS.gene68652 | MS.gene36496 | PPI |
| MS.gene68652 | MS.gene35163 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68652.t1 | MTR_2g460800 | 96.764 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 0.0 | 636 |
| MS.gene68652.t1 | MTR_2g460800 | 95.853 | 217 | 9 | 0 | 1 | 217 | 268 | 484 | 2.01e-152 | 436 |
| MS.gene68652.t1 | MTR_4g078740 | 35.816 | 282 | 171 | 6 | 1 | 279 | 1 | 275 | 1.15e-47 | 162 |
| MS.gene68652.t1 | MTR_2g090620 | 36.864 | 236 | 144 | 3 | 59 | 292 | 137 | 369 | 1.99e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68652.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 2 | 272 | 173 | 441 | 8.57e-108 | 322 |
| MS.gene68652.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 2 | 272 | 279 | 547 | 1.22e-106 | 323 |
| MS.gene68652.t1 | AT2G20590 | 36.782 | 261 | 156 | 3 | 17 | 272 | 122 | 378 | 1.12e-46 | 163 |
| MS.gene68652.t1 | AT2G20590 | 37.500 | 240 | 139 | 3 | 43 | 272 | 127 | 365 | 2.25e-46 | 162 |
| MS.gene68652.t1 | AT4G28430 | 39.070 | 215 | 129 | 2 | 59 | 272 | 193 | 406 | 2.99e-40 | 146 |
| MS.gene68652.t1 | AT2G20590 | 36.816 | 201 | 118 | 3 | 17 | 212 | 122 | 318 | 4.42e-31 | 119 |
Find 57 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGGTTTGGAGAAATTT+TGG | 0.157130 | 2.4:-37436310 | None:intergenic |
| CTAGACTCTGCAACTTGTTT+TGG | 0.174874 | 2.4:-37436478 | None:intergenic |
| TGAAAATTTCTTACTTGAAT+TGG | 0.195478 | 2.4:-37436327 | None:intergenic |
| TCATTATTACCTGCAAATTA+AGG | 0.229353 | 2.4:-37437235 | None:intergenic |
| AGTACTATTTCAGGCTTCTT+TGG | 0.243221 | 2.4:+37437955 | MS.gene68652:intron |
| CTACTGCGTTCTTCTTCTTT+TGG | 0.250422 | 2.4:-37436443 | None:intergenic |
| GTGGAAGTTTCATAACTATT+TGG | 0.254654 | 2.4:+37437812 | MS.gene68652:CDS |
| TTGTGTTGTTTCTGTCTAAC+TGG | 0.259168 | 2.4:-37440017 | None:intergenic |
| TCTATAGATCCTTAATTTGC+AGG | 0.277885 | 2.4:+37437226 | MS.gene68652:CDS |
| GACAAGAATTCATTCAAATA+AGG | 0.278389 | 2.4:-37437624 | None:intergenic |
| CAAGATCAGCATTTGTGTTT+GGG | 0.280922 | 2.4:+37436616 | MS.gene68652:CDS |
| CATCTGTTGTTGCTCGCATT+TGG | 0.323883 | 2.4:+37439787 | MS.gene68652:CDS |
| TGCAATTTGGATGCTGAAAT+TGG | 0.325517 | 2.4:+37437596 | MS.gene68652:CDS |
| TCAAGATCAGCATTTGTGTT+TGG | 0.329810 | 2.4:+37436615 | MS.gene68652:CDS |
| GAAAATTTCTTACTTGAATT+GGG | 0.330039 | 2.4:-37436326 | None:intergenic |
| TTTCTTACTTGAATTGGGTT+TGG | 0.336832 | 2.4:-37436321 | None:intergenic |
| GAATCCTTTCTTGACTTTGT+TGG | 0.339840 | 2.4:-37440051 | None:intergenic |
| TAAGAGAACAAGATGCAATT+TGG | 0.344866 | 2.4:+37437583 | MS.gene68652:CDS |
| ATACTATCAACAACACTATA+TGG | 0.360600 | 2.4:+37439938 | MS.gene68652:CDS |
| TAGGCATATTCGGTCTAGTA+TGG | 0.366112 | 2.4:+37439757 | MS.gene68652:CDS |
| ACTACAAGAGGAACAGAAAC+TGG | 0.385936 | 2.4:-37436248 | None:intergenic |
| ATCTGTTGTTGCTCGCATTT+GGG | 0.390664 | 2.4:+37439788 | MS.gene68652:CDS |
| TCAGCATTTGTGTTTGGGAT+TGG | 0.406573 | 2.4:+37436621 | MS.gene68652:CDS |
| TTTCATAACTATTTGGAAGA+TGG | 0.416263 | 2.4:+37437819 | MS.gene68652:CDS |
| TGCAGTGTTTGTACTATTTG+TGG | 0.423837 | 2.4:+37439908 | MS.gene68652:intron |
| GAATACGAAGAGCAGATCTT+TGG | 0.436812 | 2.4:-37437991 | None:intergenic |
| GCTGTGGCTCTAGGCATATT+CGG | 0.445263 | 2.4:+37439747 | MS.gene68652:CDS |
| ATTACCTTCATTGTGGTGCC+AGG | 0.452683 | 2.4:-37437675 | None:intergenic |
| TCAGCACAATTAACTGCATA+TGG | 0.452909 | 2.4:+37438012 | MS.gene68652:CDS |
| ATTTCTGCAATGTCCTATGT+AGG | 0.468181 | 2.4:+37437177 | MS.gene68652:CDS |
| ATTTGGAAGATGGCTAAAAT+CGG | 0.474250 | 2.4:+37437829 | MS.gene68652:CDS |
| TCGTCGATTCCGGGATGCAT+GGG | 0.478641 | 2.4:+37439704 | MS.gene68652:CDS |
| GTTGTTGCTCGCATTTGGGC+AGG | 0.478972 | 2.4:+37439792 | MS.gene68652:CDS |
| GAATGGGTGGAAGATGAAAC+AGG | 0.491736 | 2.4:+37439969 | MS.gene68652:CDS |
| AAGTCAAGAAAGGATTCTAA+AGG | 0.492545 | 2.4:+37440057 | MS.gene68652:CDS |
| ACTATATGGTGAGGGATGAA+TGG | 0.492619 | 2.4:+37439952 | MS.gene68652:CDS |
| TTCGTCGATTCCGGGATGCA+TGG | 0.499984 | 2.4:+37439703 | MS.gene68652:CDS |
| AACAATCCCCTACAATCAAA+AGG | 0.507778 | 2.4:+37436273 | MS.gene68652:CDS |
| ATGCAAAGGATATCAATTTG+AGG | 0.510644 | 2.4:+37436670 | MS.gene68652:CDS |
| TGCAAATTAAGGATCTATAG+AGG | 0.521117 | 2.4:-37437224 | None:intergenic |
| CTATATGGTGAGGGATGAAT+GGG | 0.530924 | 2.4:+37439953 | MS.gene68652:CDS |
| AAGATAGACAAGGCCTACAT+AGG | 0.541659 | 2.4:-37437190 | None:intergenic |
| GGGGATTGTTTCACTACAAG+AGG | 0.543889 | 2.4:-37436260 | None:intergenic |
| GCTACCAACAAAGTCAAGAA+AGG | 0.545347 | 2.4:+37440047 | MS.gene68652:CDS |
| TACTTAAATTACCTTCATTG+TGG | 0.555434 | 2.4:-37437682 | None:intergenic |
| AGATCCTGGCACCACAATGA+AGG | 0.555506 | 2.4:+37437671 | MS.gene68652:CDS |
| CAAAACAAGTTGCAGAGTCT+AGG | 0.557021 | 2.4:+37436479 | MS.gene68652:CDS |
| AGTCTCATCTTCTTATGCAA+AGG | 0.559905 | 2.4:+37436656 | MS.gene68652:CDS |
| TGCATGAATCCCATGCATCC+CGG | 0.564871 | 2.4:-37439713 | None:intergenic |
| AGAATTCATTCAAATAAGGT+AGG | 0.591737 | 2.4:-37437620 | None:intergenic |
| CAACAGTGGATTTAATAATG+TGG | 0.598108 | 2.4:+37436583 | MS.gene68652:intron |
| AAACAGGATGTGATGAAGCA+TGG | 0.601103 | 2.4:+37439985 | MS.gene68652:CDS |
| TATGGTGAGGGATGAATGGG+TGG | 0.602229 | 2.4:+37439956 | MS.gene68652:CDS |
| ATCAACAACACTATATGGTG+AGG | 0.602777 | 2.4:+37439943 | MS.gene68652:CDS |
| AACAGGATGTGATGAAGCAT+GGG | 0.612508 | 2.4:+37439986 | MS.gene68652:CDS |
| TCAACAACACTATATGGTGA+GGG | 0.642871 | 2.4:+37439944 | MS.gene68652:CDS |
| AGATAACTGCAAGATAGACA+AGG | 0.714341 | 2.4:-37437200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTATATATATATAGT+GGG | + | chr2.4:37437488-37437507 | MS.gene68652:intron | 10.0% |
| !!! | TATTTTGAAAATGATTATAT+AGG | + | chr2.4:37439519-37439538 | MS.gene68652:intron | 10.0% |
| !! | ATAATGCAAATATTCTAAAT+AGG | - | chr2.4:37436884-37436903 | None:intergenic | 15.0% |
| !! | CAAATTATATATATATAGTG+GGG | + | chr2.4:37437489-37437508 | MS.gene68652:intron | 15.0% |
| !! | GACAAATTATATATATATAG+TGG | + | chr2.4:37437487-37437506 | MS.gene68652:intron | 15.0% |
| !! | TAATTAATAAATACATCACA+TGG | + | chr2.4:37439105-37439124 | MS.gene68652:intron | 15.0% |
| !!! | ATACATATTTTTCATTTTCA+GGG | + | chr2.4:37438786-37438805 | MS.gene68652:intron | 15.0% |
| !!! | ATTTTTCGAGTTTATATTTA+AGG | + | chr2.4:37437465-37437484 | MS.gene68652:intron | 15.0% |
| !!! | CAGTTGTTAATTTTTTTTAT+GGG | + | chr2.4:37437520-37437539 | MS.gene68652:intron | 15.0% |
| !!! | TATACATATTTTTCATTTTC+AGG | + | chr2.4:37438785-37438804 | MS.gene68652:intron | 15.0% |
| !!! | TCAGTTGTTAATTTTTTTTA+TGG | + | chr2.4:37437519-37437538 | MS.gene68652:intron | 15.0% |
| !!! | TTATTATTATTGCTAGTTTT+AGG | + | chr2.4:37438695-37438714 | MS.gene68652:intron | 15.0% |
| !! | AAACTTACTATATACGAATA+CGG | - | chr2.4:37437441-37437460 | None:intergenic | 20.0% |
| !! | AATATCACGTGTATAAAAAA+TGG | - | chr2.4:37438521-37438540 | None:intergenic | 20.0% |
| !! | GAAAATTTCTTACTTGAATT+GGG | - | chr2.4:37436329-37436348 | None:intergenic | 20.0% |
| !! | TCATAATAATCGTAACATAA+TGG | + | chr2.4:37439281-37439300 | MS.gene68652:intron | 20.0% |
| !! | TGAAAATTTCTTACTTGAAT+TGG | - | chr2.4:37436330-37436349 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | + | chr2.4:37436804-37436823 | MS.gene68652:intron | 20.0% |
| !!! | ATAAATTTTCATCATACTAG+TGG | - | chr2.4:37439411-37439430 | None:intergenic | 20.0% |
| !!! | ATTGTTTTACATTGACATAT+TGG | - | chr2.4:37439549-37439568 | None:intergenic | 20.0% |
| !!! | CAACATTAAATTTGTTTTTG+TGG | + | chr2.4:37438204-37438223 | MS.gene68652:intron | 20.0% |
| !!! | CAATATAACTTTTACTGTTT+CGG | + | chr2.4:37437118-37437137 | MS.gene68652:intron | 20.0% |
| !!! | CAGTCAATTTTGTAATTTTT+GGG | + | chr2.4:37436358-37436377 | MS.gene68652:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | + | chr2.4:37436805-37436824 | MS.gene68652:intron | 20.0% |
| !!! | GATATGATAAAGCAAATTTT+TGG | + | chr2.4:37439679-37439698 | MS.gene68652:intron | 20.0% |
| !!! | TAAAATCGGTAAGTTTTTAA+AGG | + | chr2.4:37437843-37437862 | MS.gene68652:intron | 20.0% |
| !!! | TACATATCTACTCTTTTATA+CGG | + | chr2.4:37438139-37438158 | MS.gene68652:intron | 20.0% |
| !!! | TCAGTCAATTTTGTAATTTT+TGG | + | chr2.4:37436357-37436376 | MS.gene68652:intron | 20.0% |
| !!! | TCTTTTATTTTGGTAAACTA+GGG | + | chr2.4:37439243-37439262 | MS.gene68652:intron | 20.0% |
| !!! | TGTGGATTTTTTTTTTTTTG+AGG | + | chr2.4:37438222-37438241 | MS.gene68652:intron | 20.0% |
| !!! | TGTGTTTTACTAATCTTTTA+AGG | + | chr2.4:37436413-37436432 | MS.gene68652:intron | 20.0% |
| ! | AACTTACTATATACGAATAC+GGG | - | chr2.4:37437440-37437459 | None:intergenic | 25.0% |
| ! | ACATTAATTACATTATCAGC+GGG | - | chr2.4:37437386-37437405 | None:intergenic | 25.0% |
| ! | ACTGCATTGTTAAATTAGTT+GGG | + | chr2.4:37437291-37437310 | MS.gene68652:intron | 25.0% |
| ! | AGAATTCATTCAAATAAGGT+AGG | - | chr2.4:37437623-37437642 | None:intergenic | 25.0% |
| ! | ATACTATCAACAACACTATA+TGG | + | chr2.4:37439938-37439957 | MS.gene68652:CDS | 25.0% |
| ! | ATAGTGTAGAATAGATTAGA+CGG | + | chr2.4:37438066-37438085 | MS.gene68652:intron | 25.0% |
| ! | CACATTAATTACATTATCAG+CGG | - | chr2.4:37437387-37437406 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | - | chr2.4:37436808-37436827 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr2.4:37436870-37436889 | None:intergenic | 25.0% |
| ! | GACAAGAATTCATTCAAATA+AGG | - | chr2.4:37437627-37437646 | None:intergenic | 25.0% |
| ! | TACTGCATTGTTAAATTAGT+TGG | + | chr2.4:37437290-37437309 | MS.gene68652:intron | 25.0% |
| ! | TACTTAAATTACCTTCATTG+TGG | - | chr2.4:37437685-37437704 | None:intergenic | 25.0% |
| ! | TAGTAATAATGTAGATCTGA+CGG | + | chr2.4:37438582-37438601 | MS.gene68652:intron | 25.0% |
| ! | TCAACATAAATTGTTGGATT+TGG | + | chr2.4:37436747-37436766 | MS.gene68652:intron | 25.0% |
| ! | TCATTATTACCTGCAAATTA+AGG | - | chr2.4:37437238-37437257 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr2.4:37436871-37436890 | None:intergenic | 25.0% |
| ! | TCTACATTATTACTATGCAT+TGG | - | chr2.4:37438577-37438596 | None:intergenic | 25.0% |
| ! | TTTCATAACTATTTGGAAGA+TGG | + | chr2.4:37437819-37437838 | MS.gene68652:CDS | 25.0% |
| !!! | ATTATTGCTAGTTTTAGGTT+TGG | + | chr2.4:37438700-37438719 | MS.gene68652:intron | 25.0% |
| !!! | GTCTTTTATTTTGGTAAACT+AGG | + | chr2.4:37439242-37439261 | MS.gene68652:intron | 25.0% |
| !!! | GTGACAATTGTCTTTTATTT+TGG | + | chr2.4:37439233-37439252 | MS.gene68652:intron | 25.0% |
| !!! | TAATTTTTTTTATGGGCTCA+GGG | + | chr2.4:37437527-37437546 | MS.gene68652:intron | 25.0% |
| !!! | TTAATTTTTTTTATGGGCTC+AGG | + | chr2.4:37437526-37437545 | MS.gene68652:intron | 25.0% |
| !!! | TTGAATTCCTTTTGATTGTA+GGG | - | chr2.4:37436283-37436302 | None:intergenic | 25.0% |
| !!! | TTTGAATTCCTTTTGATTGT+AGG | - | chr2.4:37436284-37436303 | None:intergenic | 25.0% |
| !!! | TTTTTGAGGAATTGTTTTTC+TGG | + | chr2.4:37438236-37438255 | MS.gene68652:intron | 25.0% |
| AAATAAGACTGCAAAAAGCA+AGG | - | chr2.4:37437161-37437180 | None:intergenic | 30.0% | |
| AACCTATACTCATCAAAATC+AGG | - | chr2.4:37438045-37438064 | None:intergenic | 30.0% | |
| AACTGGTCAACATAAATTGT+TGG | + | chr2.4:37436741-37436760 | MS.gene68652:intron | 30.0% | |
| AATAAGACTGCAAAAAGCAA+GGG | - | chr2.4:37437160-37437179 | None:intergenic | 30.0% | |
| ACACTAGTTAAACTAATGTG+TGG | + | chr2.4:37439869-37439888 | MS.gene68652:intron | 30.0% | |
| ACGAAAAGTAAAGACAAAAG+AGG | - | chr2.4:37439375-37439394 | None:intergenic | 30.0% | |
| ACTAACTCTAGTACTATTTC+AGG | + | chr2.4:37437946-37437965 | MS.gene68652:intron | 30.0% | |
| AGTAATAATGTAGATCTGAC+GGG | + | chr2.4:37438583-37438602 | MS.gene68652:intron | 30.0% | |
| ATACGACAAAGATATAAGGA+AGG | + | chr2.4:37438487-37438506 | MS.gene68652:intron | 30.0% | |
| ATGCAAAGGATATCAATTTG+AGG | + | chr2.4:37436670-37436689 | MS.gene68652:CDS | 30.0% | |
| ATTTGGAAGATGGCTAAAAT+CGG | + | chr2.4:37437829-37437848 | MS.gene68652:CDS | 30.0% | |
| CATTATTAAATCCACTGTTG+AGG | - | chr2.4:37436583-37436602 | None:intergenic | 30.0% | |
| GGTCAACAAAACAATGTATT+TGG | - | chr2.4:37436787-37436806 | None:intergenic | 30.0% | |
| GTGGAAGTTTCATAACTATT+TGG | + | chr2.4:37437812-37437831 | MS.gene68652:CDS | 30.0% | |
| TAAAGGCCTAACAAAATGAT+GGG | + | chr2.4:37437860-37437879 | MS.gene68652:intron | 30.0% | |
| TAAATATAAGCATGCACGAT+CGG | - | chr2.4:37438119-37438138 | None:intergenic | 30.0% | |
| TAAGAGAACAAGATGCAATT+TGG | + | chr2.4:37437583-37437602 | MS.gene68652:CDS | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr2.4:37437083-37437102 | MS.gene68652:intron | 30.0% | |
| TCCAATACGACAAAGATATA+AGG | + | chr2.4:37438483-37438502 | MS.gene68652:intron | 30.0% | |
| TCCTTATATCTTTGTCGTAT+TGG | - | chr2.4:37438487-37438506 | None:intergenic | 30.0% | |
| TGCAAATTAAGGATCTATAG+AGG | - | chr2.4:37437227-37437246 | None:intergenic | 30.0% | |
| TTAAAGGCCTAACAAAATGA+TGG | + | chr2.4:37437859-37437878 | MS.gene68652:intron | 30.0% | |
| TTATAATTTCTCCTCAACAG+TGG | + | chr2.4:37436569-37436588 | MS.gene68652:intron | 30.0% | |
| TTTCTTACTTGAATTGGGTT+TGG | - | chr2.4:37436324-37436343 | None:intergenic | 30.0% | |
| ! | AATTGGGTTTGGAGAAATTT+TGG | - | chr2.4:37436313-37436332 | None:intergenic | 30.0% |
| ! | CAACAGTGGATTTAATAATG+TGG | + | chr2.4:37436583-37436602 | MS.gene68652:intron | 30.0% |
| ! | TATACGAATACGGGTATTTT+AGG | - | chr2.4:37437431-37437450 | None:intergenic | 30.0% |
| ! | TGTTTATTTCATGCGAGTTT+TGG | + | chr2.4:37438454-37438473 | MS.gene68652:intron | 30.0% |
| !! | AAACACAGTATTGTTGACTT+TGG | - | chr2.4:37439333-37439352 | None:intergenic | 30.0% |
| !! | AACACAGTATTGTTGACTTT+GGG | - | chr2.4:37439332-37439351 | None:intergenic | 30.0% |
| !! | TCTATAGATCCTTAATTTGC+AGG | + | chr2.4:37437226-37437245 | MS.gene68652:CDS | 30.0% |
| !! | TGAATTCCTTTTGATTGTAG+GGG | - | chr2.4:37436282-37436301 | None:intergenic | 30.0% |
| !! | TTCCTGATTTTGATGAGTAT+AGG | + | chr2.4:37438040-37438059 | MS.gene68652:intron | 30.0% |
| !!! | AATTTTTTTTATGGGCTCAG+GGG | + | chr2.4:37437528-37437547 | MS.gene68652:intron | 30.0% |
| !!! | CACACACATTTTCTAAAGTT+AGG | - | chr2.4:37436397-37436416 | None:intergenic | 30.0% |
| !!! | TTGCTTATATTTTGGGACTA+AGG | + | chr2.4:37436812-37436831 | MS.gene68652:intron | 30.0% |
| !!! | TTTGGTTTTCTTTTAGCCAA+TGG | + | chr2.4:37439137-37439156 | MS.gene68652:intron | 30.0% |
| AAAAAACATGATTGCGCCAT+TGG | - | chr2.4:37439156-37439175 | None:intergenic | 35.0% | |
| AAACTAGGGAACACAATTGT+TGG | + | chr2.4:37439257-37439276 | MS.gene68652:intron | 35.0% | |
| AAATATCCAGAGAGAGTCAT+TGG | + | chr2.4:37439466-37439485 | MS.gene68652:intron | 35.0% | |
| AAATGTGTACGAATTGCAGT+TGG | + | chr2.4:37437762-37437781 | MS.gene68652:intron | 35.0% | |
| AACAATCCCCTACAATCAAA+AGG | + | chr2.4:37436273-37436292 | MS.gene68652:CDS | 35.0% | |
| ACCTTACAAGTGATAAGAGA+GGG | - | chr2.4:37438397-37438416 | None:intergenic | 35.0% | |
| AGATAACTGCAAGATAGACA+AGG | - | chr2.4:37437203-37437222 | None:intergenic | 35.0% | |
| AGTACTATTTCAGGCTTCTT+TGG | + | chr2.4:37437955-37437974 | MS.gene68652:intron | 35.0% | |
| AGTCTCATCTTCTTATGCAA+AGG | + | chr2.4:37436656-37436675 | MS.gene68652:CDS | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr2.4:37436866-37436885 | None:intergenic | 35.0% | |
| ATCAACAACACTATATGGTG+AGG | + | chr2.4:37439943-37439962 | MS.gene68652:CDS | 35.0% | |
| ATTTCTGCAATGTCCTATGT+AGG | + | chr2.4:37437177-37437196 | MS.gene68652:CDS | 35.0% | |
| CAAGATCAGCATTTGTGTTT+GGG | + | chr2.4:37436616-37436635 | MS.gene68652:CDS | 35.0% | |
| CCTACGTGTTAAAATTAGAG+TGG | - | chr2.4:37437324-37437343 | None:intergenic | 35.0% | |
| CTAGTTAAACTAATGTGTGG+TGG | + | chr2.4:37439872-37439891 | MS.gene68652:intron | 35.0% | |
| GAATCCTTTCTTGACTTTGT+TGG | - | chr2.4:37440054-37440073 | None:intergenic | 35.0% | |
| GCAATTCGTACACATTTAGA+GGG | - | chr2.4:37437759-37437778 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr2.4:37437082-37437101 | MS.gene68652:intron | 35.0% | |
| TACCTTACAAGTGATAAGAG+AGG | - | chr2.4:37438398-37438417 | None:intergenic | 35.0% | |
| TCAACAACACTATATGGTGA+GGG | + | chr2.4:37439944-37439963 | MS.gene68652:CDS | 35.0% | |
| TCAAGATCAGCATTTGTGTT+TGG | + | chr2.4:37436615-37436634 | MS.gene68652:CDS | 35.0% | |
| TCAGCACAATTAACTGCATA+TGG | + | chr2.4:37438012-37438031 | MS.gene68652:CDS | 35.0% | |
| TCCAAAATGTAAGCACAAAC+TGG | + | chr2.4:37436724-37436743 | MS.gene68652:intron | 35.0% | |
| TGCAATTCGTACACATTTAG+AGG | - | chr2.4:37437760-37437779 | None:intergenic | 35.0% | |
| TGCAATTTGGATGCTGAAAT+TGG | + | chr2.4:37437596-37437615 | MS.gene68652:CDS | 35.0% | |
| TGCAGTGTTTGTACTATTTG+TGG | + | chr2.4:37439908-37439927 | MS.gene68652:intron | 35.0% | |
| TGGAGTCAACATAGAATAGA+AGG | - | chr2.4:37438557-37438576 | None:intergenic | 35.0% | |
| TTAATTACATTATCAGCGGG+TGG | - | chr2.4:37437383-37437402 | None:intergenic | 35.0% | |
| TTGATCCCATTACTTGCATT+GGG | + | chr2.4:37439196-37439215 | MS.gene68652:intron | 35.0% | |
| TTTGATCCCATTACTTGCAT+TGG | + | chr2.4:37439195-37439214 | MS.gene68652:intron | 35.0% | |
| ! | ACCAGTTTGTGCTTACATTT+TGG | - | chr2.4:37436728-37436747 | None:intergenic | 35.0% |
| ! | GAAAGACCCATCATTTTGTT+AGG | - | chr2.4:37437869-37437888 | None:intergenic | 35.0% |
| ! | TTTTCATCATACTAGTGGAG+TGG | - | chr2.4:37439406-37439425 | None:intergenic | 35.0% |
| !! | AGCTAGTTTGATTTTGTCGT+TGG | - | chr2.4:37439044-37439063 | None:intergenic | 35.0% |
| !! | AGTATTGTTGACTTTGGGAT+TGG | - | chr2.4:37439327-37439346 | None:intergenic | 35.0% |
| !! | ATCACATGGATTAGCATCTT+TGG | + | chr2.4:37439119-37439138 | MS.gene68652:intron | 35.0% |
| !! | CCACTCTAATTTTAACACGT+AGG | + | chr2.4:37437321-37437340 | MS.gene68652:intron | 35.0% |
| !! | GTATTGTTGACTTTGGGATT+GGG | - | chr2.4:37439326-37439345 | None:intergenic | 35.0% |
| !! | TAGACTCTGCAACTTGTTTT+GGG | - | chr2.4:37436480-37436499 | None:intergenic | 35.0% |
| !! | TTGTGTTGTTTCTGTCTAAC+TGG | - | chr2.4:37440020-37440039 | None:intergenic | 35.0% |
| !!! | AAACTGAAAGCACTTTTCTC+TGG | + | chr2.4:37437648-37437667 | MS.gene68652:CDS | 35.0% |
| !!! | ATTTTTGGATTCGTCGATTC+CGG | + | chr2.4:37439694-37439713 | MS.gene68652:CDS | 35.0% |
| !!! | TGCAACTTGTTTTGGGTTTT+TGG | - | chr2.4:37436473-37436492 | None:intergenic | 35.0% |
| !!! | TGCTTACATTTTGGAATCGA+GGG | - | chr2.4:37436719-37436738 | None:intergenic | 35.0% |
| AAACAGGATGTGATGAAGCA+TGG | + | chr2.4:37439985-37440004 | MS.gene68652:CDS | 40.0% | |
| AACAGGATGTGATGAAGCAT+GGG | + | chr2.4:37439986-37440005 | MS.gene68652:CDS | 40.0% | |
| AAGAGACCCAATGCAAGTAA+TGG | - | chr2.4:37439205-37439224 | None:intergenic | 40.0% | |
| AAGATAGACAAGGCCTACAT+AGG | - | chr2.4:37437193-37437212 | None:intergenic | 40.0% | |
| ACTACAAGAGGAACAGAAAC+TGG | - | chr2.4:37436251-37436270 | None:intergenic | 40.0% | |
| ACTATATGGTGAGGGATGAA+TGG | + | chr2.4:37439952-37439971 | MS.gene68652:CDS | 40.0% | |
| AGAGACCCAATGCAAGTAAT+GGG | - | chr2.4:37439204-37439223 | None:intergenic | 40.0% | |
| ATCTGTTGTTGCTCGCATTT+GGG | + | chr2.4:37439788-37439807 | MS.gene68652:CDS | 40.0% | |
| ATGCACTCACAAAAAAGCTG+TGG | + | chr2.4:37439731-37439750 | MS.gene68652:CDS | 40.0% | |
| ATTTAGTGTATGCCGACAGA+AGG | - | chr2.4:37438175-37438194 | None:intergenic | 40.0% | |
| CAAAACAAGTTGCAGAGTCT+AGG | + | chr2.4:37436479-37436498 | MS.gene68652:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr2.4:37437087-37437106 | MS.gene68652:intron | 40.0% | |
| CTATATGGTGAGGGATGAAT+GGG | + | chr2.4:37439953-37439972 | MS.gene68652:CDS | 40.0% | |
| GAATACGAAGAGCAGATCTT+TGG | - | chr2.4:37437994-37438013 | None:intergenic | 40.0% | |
| GCTACCAACAAAGTCAAGAA+AGG | + | chr2.4:37440047-37440066 | MS.gene68652:CDS | 40.0% | |
| GGATTATGATACCCTTCTGT+CGG | + | chr2.4:37438160-37438179 | MS.gene68652:intron | 40.0% | |
| GTAGAATAGATTAGACGGTG+CGG | + | chr2.4:37438071-37438090 | MS.gene68652:intron | 40.0% | |
| TACACTGACAGACAGACAAA+TGG | + | chr2.4:37437914-37437933 | MS.gene68652:intron | 40.0% | |
| TAGGCATATTCGGTCTAGTA+TGG | + | chr2.4:37439757-37439776 | MS.gene68652:CDS | 40.0% | |
| TTTAGTGTATGCCGACAGAA+GGG | - | chr2.4:37438174-37438193 | None:intergenic | 40.0% | |
| ! | CTACTGCGTTCTTCTTCTTT+TGG | - | chr2.4:37436446-37436465 | None:intergenic | 40.0% |
| ! | TCAGCATTTGTGTTTGGGAT+TGG | + | chr2.4:37436621-37436640 | MS.gene68652:CDS | 40.0% |
| !! | CTAGACTCTGCAACTTGTTT+TGG | - | chr2.4:37436481-37436500 | None:intergenic | 40.0% |
| !! | GGCAGTTTTGCTCTTTGTTT+TGG | + | chr2.4:37437783-37437802 | MS.gene68652:CDS | 40.0% |
| !!! | CTCTTTGTTTTGGCAAGATG+TGG | + | chr2.4:37437793-37437812 | MS.gene68652:CDS | 40.0% |
| !!! | GTGCTTACATTTTGGAATCG+AGG | - | chr2.4:37436720-37436739 | None:intergenic | 40.0% |
| !!! | TTTTTGGATTCGTCGATTCC+GGG | + | chr2.4:37439695-37439714 | MS.gene68652:CDS | 40.0% |
| ATCATACTAGTGGAGTGGCT+GGG | - | chr2.4:37439401-37439420 | None:intergenic | 45.0% | |
| ATTACCTTCATTGTGGTGCC+AGG | - | chr2.4:37437678-37437697 | None:intergenic | 45.0% | |
| CACAAAAAAGCTGTGGCTCT+AGG | + | chr2.4:37439738-37439757 | MS.gene68652:CDS | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr2.4:37437069-37437088 | MS.gene68652:intron | 45.0% | |
| CATCTGTTGTTGCTCGCATT+TGG | + | chr2.4:37439787-37439806 | MS.gene68652:CDS | 45.0% | |
| GAATGGGTGGAAGATGAAAC+AGG | + | chr2.4:37439969-37439988 | MS.gene68652:CDS | 45.0% | |
| GAGGGTTCTTCTATCTATGC+TGG | - | chr2.4:37437741-37437760 | None:intergenic | 45.0% | |
| GCAAAACCAATGACTCTCTC+TGG | - | chr2.4:37439475-37439494 | None:intergenic | 45.0% | |
| GCCCTCTCTTATCACTTGTA+AGG | + | chr2.4:37438393-37438412 | MS.gene68652:intron | 45.0% | |
| GGGGATTGTTTCACTACAAG+AGG | - | chr2.4:37436263-37436282 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2.4:37437091-37437110 | MS.gene68652:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2.4:37437110-37437091 | None:intergenic | 45.0% | |
| AATGGTCCTCCACATCCTTG+TGG | + | chr2.4:37439299-37439318 | MS.gene68652:intron | 50.0% | |
| AGATCCTGGCACCACAATGA+AGG | + | chr2.4:37437671-37437690 | MS.gene68652:CDS | 50.0% | |
| CATCATACTAGTGGAGTGGC+TGG | - | chr2.4:37439402-37439421 | None:intergenic | 50.0% | |
| CATGCACGATCGGCTAATGT+GGG | - | chr2.4:37438109-37438128 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2.4:37437090-37437109 | MS.gene68652:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2.4:37437109-37437090 | None:intergenic | 50.0% | |
| TATGGTGAGGGATGAATGGG+TGG | + | chr2.4:37439956-37439975 | MS.gene68652:CDS | 50.0% | |
| TGCATGAATCCCATGCATCC+CGG | - | chr2.4:37439716-37439735 | None:intergenic | 50.0% | |
| TGTCGTTGGATGAGACGATG+AGG | - | chr2.4:37439030-37439049 | None:intergenic | 50.0% | |
| !! | ACTTTGGGATTGGGACCACA+AGG | - | chr2.4:37439317-37439336 | None:intergenic | 50.0% |
| !! | GCACTTTTCTCTGGAGATCC+TGG | + | chr2.4:37437657-37437676 | MS.gene68652:CDS | 50.0% |
| !! | GCTGTGGCTCTAGGCATATT+CGG | + | chr2.4:37439747-37439766 | MS.gene68652:CDS | 50.0% |
| AGACGGTGCGGTGCTTTCAT+GGG | + | chr2.4:37438083-37438102 | MS.gene68652:intron | 55.0% | |
| GCATGCACGATCGGCTAATG+TGG | - | chr2.4:37438110-37438129 | None:intergenic | 55.0% | |
| GGATTGGGACCACAAGGATG+TGG | - | chr2.4:37439311-37439330 | None:intergenic | 55.0% | |
| GTTGTTGCTCGCATTTGGGC+AGG | + | chr2.4:37439792-37439811 | MS.gene68652:CDS | 55.0% | |
| TAGACGGTGCGGTGCTTTCA+TGG | + | chr2.4:37438082-37438101 | MS.gene68652:intron | 55.0% | |
| TTGGGACCACAAGGATGTGG+AGG | - | chr2.4:37439308-37439327 | None:intergenic | 55.0% | |
| !! | TCGTCGATTCCGGGATGCAT+GGG | + | chr2.4:37439704-37439723 | MS.gene68652:CDS | 55.0% |
| !! | TTCGTCGATTCCGGGATGCA+TGG | + | chr2.4:37439703-37439722 | MS.gene68652:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37436218 | 37440076 | 37436218 | ID=MS.gene68652 |
| chr2.4 | mRNA | 37436218 | 37440076 | 37436218 | ID=MS.gene68652.t1;Parent=MS.gene68652 |
| chr2.4 | exon | 37436218 | 37436335 | 37436218 | ID=MS.gene68652.t1.exon1;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37436218 | 37436335 | 37436218 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37436435 | 37436500 | 37436435 | ID=MS.gene68652.t1.exon2;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37436435 | 37436500 | 37436435 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37436589 | 37436691 | 37436589 | ID=MS.gene68652.t1.exon3;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37436589 | 37436691 | 37436589 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37437173 | 37437247 | 37437173 | ID=MS.gene68652.t1.exon4;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37437173 | 37437247 | 37437173 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37437548 | 37437692 | 37437548 | ID=MS.gene68652.t1.exon5;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37437548 | 37437692 | 37437548 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37437781 | 37437850 | 37437781 | ID=MS.gene68652.t1.exon6;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37437781 | 37437850 | 37437781 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37437968 | 37438033 | 37437968 | ID=MS.gene68652.t1.exon7;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37437968 | 37438033 | 37437968 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37439691 | 37439813 | 37439691 | ID=MS.gene68652.t1.exon8;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37439691 | 37439813 | 37439691 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| chr2.4 | exon | 37439913 | 37440076 | 37439913 | ID=MS.gene68652.t1.exon9;Parent=MS.gene68652.t1 |
| chr2.4 | CDS | 37439913 | 37440076 | 37439913 | ID=cds.MS.gene68652.t1;Parent=MS.gene68652.t1 |
| Gene Sequence |
| Protein sequence |
