AlfalfaGEDB | MS.gene68650

M. sativa cultivar XinJiangDaYe / MS.gene68650

KEGG: K20720
GO: -
PFAM: PF02453.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68650.t1	XP_013464042.1	96.8	309	10	0	1	309	268	576	1.30E-167	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68650.t1	Q56X72	56.9	267	112	2	2	267	173	437	6.5e-80	298.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68650.t1	A0A072V8B4	96.8	309	10	0	1	309	268	576	9.2e-168	599.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051328	MS.gene68650	0.804123	2.51E-49	-1.69E-46
MS.gene051720	MS.gene68650	0.810906	9.13E-51	-1.69E-46
MS.gene053144	MS.gene68650	0.839582	1.45E-57	-1.69E-46
MS.gene053581	MS.gene68650	0.810719	1.00E-50	-1.69E-46
MS.gene054584	MS.gene68650	0.831276	1.83E-55	-1.69E-46
MS.gene055144	MS.gene68650	0.808401	3.15E-50	-1.69E-46
MS.gene055466	MS.gene68650	0.8098	1.58E-50	-1.69E-46
MS.gene055468	MS.gene68650	0.805236	1.47E-49	-1.69E-46
MS.gene055537	MS.gene68650	0.801733	7.83E-49	-1.69E-46
MS.gene056368	MS.gene68650	0.801029	1.09E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene028296	MS.gene68650	PPI
MS.gene68650	MS.gene35163	PPI
MS.gene68650	MS.gene36496	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68650.t1	MTR_2g460800	96.764	309	10	0	1	309	268	576	0.0	636
MS.gene68650.t1	MTR_2g460800	95.853	217	9	0	1	217	268	484	2.01e-152	436
MS.gene68650.t1	MTR_4g078740	35.816	282	171	6	1	279	1	275	1.15e-47	162
MS.gene68650.t1	MTR_2g090620	36.864	236	144	3	59	292	137	369	1.99e-47	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68650.t1	AT5G58000	56.934	274	110	5	2	272	173	441	8.57e-108	322
MS.gene68650.t1	AT5G58000	56.934	274	110	5	2	272	279	547	1.22e-106	323
MS.gene68650.t1	AT2G20590	36.782	261	156	3	17	272	122	378	1.12e-46	163
MS.gene68650.t1	AT2G20590	37.500	240	139	3	43	272	127	365	2.25e-46	162
MS.gene68650.t1	AT4G28430	39.070	215	129	2	59	272	193	406	2.99e-40	146
MS.gene68650.t1	AT2G20590	36.816	201	118	3	17	212	122	318	4.42e-31	119

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Find 57 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGATGTGATGAAGCA+TGG	0.601103	2.4:+37399636	MS.gene68650:CDS
AACAATCCCCTACAATCAAA+AGG	0.507778	2.4:+37395924	MS.gene68650:CDS
AACAGGATGTGATGAAGCAT+GGG	0.612508	2.4:+37399637	MS.gene68650:CDS
AAGATAGACAAGGCCTACAT+AGG	0.541659	2.4:-37396841	None:intergenic
AAGTCAAGAAAGGATTCTAA+AGG	0.492545	2.4:+37399708	MS.gene68650:CDS
AATTGGGTTTGGAGAAATTT+TGG	0.157130	2.4:-37395961	None:intergenic
ACTACAAGAGGAACAGAAAC+TGG	0.385936	2.4:-37395899	None:intergenic
ACTATATGGTGAGGGATGAA+TGG	0.492619	2.4:+37399603	MS.gene68650:CDS
AGAATTCATTCAAATAAGGT+AGG	0.591737	2.4:-37397271	None:intergenic
AGATAACTGCAAGATAGACA+AGG	0.714341	2.4:-37396851	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGACTGCAAAAAGCA+AGG	-	chr2.4:37396812-37396831	None:intergenic	30.0%
AACCTATACTCATCAAAATC+AGG	-	chr2.4:37397696-37397715	None:intergenic	30.0%
AACTGGTCAACATAAATTGT+TGG	+	chr2.4:37396392-37396411	MS.gene68650:intron	30.0%
AATAAGACTGCAAAAAGCAA+GGG	-	chr2.4:37396811-37396830	None:intergenic	30.0%
ACACTAGTTAAACTAATGTG+TGG	+	chr2.4:37399520-37399539	MS.gene68650:intron	30.0%
ACGAAAAGTAAAGACAAAAG+AGG	-	chr2.4:37399026-37399045	None:intergenic	30.0%
ACTAACTCTAGTACTATTTC+AGG	+	chr2.4:37397597-37397616	MS.gene68650:intron	30.0%
AGTAATAATGTAGATCTGAC+GGG	+	chr2.4:37398234-37398253	MS.gene68650:intron	30.0%
ATACGACAAAGATATAAGGA+AGG	+	chr2.4:37398138-37398157	MS.gene68650:intron	30.0%
ATGCAAAGGATATCAATTTG+AGG	+	chr2.4:37396321-37396340	MS.gene68650:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	37395869	37399727	37395869	ID=MS.gene68650
chr2.4	mRNA	37395869	37399727	37395869	ID=MS.gene68650.t1;Parent=MS.gene68650
chr2.4	exon	37395869	37395986	37395869	ID=MS.gene68650.t1.exon1;Parent=MS.gene68650.t1
chr2.4	CDS	37395869	37395986	37395869	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37396086	37396151	37396086	ID=MS.gene68650.t1.exon2;Parent=MS.gene68650.t1
chr2.4	CDS	37396086	37396151	37396086	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37396240	37396342	37396240	ID=MS.gene68650.t1.exon3;Parent=MS.gene68650.t1
chr2.4	CDS	37396240	37396342	37396240	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37396824	37396898	37396824	ID=MS.gene68650.t1.exon4;Parent=MS.gene68650.t1
chr2.4	CDS	37396824	37396898	37396824	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37397199	37397343	37397199	ID=MS.gene68650.t1.exon5;Parent=MS.gene68650.t1
chr2.4	CDS	37397199	37397343	37397199	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37397432	37397501	37397432	ID=MS.gene68650.t1.exon6;Parent=MS.gene68650.t1
chr2.4	CDS	37397432	37397501	37397432	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37397619	37397684	37397619	ID=MS.gene68650.t1.exon7;Parent=MS.gene68650.t1
chr2.4	CDS	37397619	37397684	37397619	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37399342	37399464	37399342	ID=MS.gene68650.t1.exon8;Parent=MS.gene68650.t1
chr2.4	CDS	37399342	37399464	37399342	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1
chr2.4	exon	37399564	37399727	37399564	ID=MS.gene68650.t1.exon9;Parent=MS.gene68650.t1
chr2.4	CDS	37399564	37399727	37399564	ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1

Gene Sequence

>MS.gene68650

ATGAGATTTCATCACAAAAATGAAAGAAGACCAGTTTCTGTTCCTCTTGTAGTGAAACAATCCCCTACAATCAAAAGGAATTCAAAAATTTACCAAAATTTCTCCAAACCCAATTCAAGTAAGAAATTTTCAGTTTCATTCAGTCAATTTTGTAATTTTTGGGTTTAATTCGTTGTCCTAACTTTAGAAAATGTGTGTGTTTTACTAATCTTTTAAGGTTCAGTTCCAAAAGAAGAAGAACGCAGTAGCTTTCCAAAAACCCAAAACAAGTTGCAGAGTCTAGGTGATTTTCATCTCAATTATGTGTTGACAAAATTTCATTCAATTCAATTTATAGAAAATAATAATTATTTATAATTTCTCCTCAACAGTGGATTTAATAATGTGGAGAGATGTTTCAAGATCAGCATTTGTGTTTGGGATTGGAACATTTGTTATAGTCTCATCTTCTTATGCAAAGGATATCAATTTGAGGTTAGAAATCATACAGAGTTTACTCCCTCGATTCCAAAATGTAAGCACAAACTGGTCAACATAAATTGTTGGATTTGGTACAAATTTTGAAACCAAATACATTGTTTTGTTGACCAATTTTTGCTTATATTTTGGGACTAAGGAAGAATTTATTTTACTATGATATTCCCTCCGTCCCATATTACTTGACCTATTTAGAATATTTGCATTATTCATGCAACATGTTTTGACTCTATTTTTCTACTAATATATAAAAACAAAATATAGCATATAAGATGTTGTTAGATTCGTCTCGATTAATATTTTCAAAATATAAAATTTTTGTAATTTTTTCTACTAGATTATTAAAGAAATTTAAGTTTAAAATTGTGCATTGACATACGTGACAGAGTCAACTAGGTCAAGTAATATGGGACGGAGGGAGTACAATATAACTTTTACTGTTTCGGAACTGATGTGTTTCTGCCCTTGCTTTTTGCAGTCTTATTTCTGCAATGTCCTATGTAGGCCTTGTCTATCTTGCAGTTATCTTCCTCTATAGATCCTTAATTTGCAGGTAATAATGAGTAACTCATTCAATTTTTGTGACAGAGATACTTACTGCATTGTTAAATTAGTTGGGAGAATCACCACTCTAATTTTAACACGTAGGATTTTCAATAGAATGTAAGTAAAAAAAAAAACATAACCACCCGCTGATAATGTAATTAATGTGTTTATTTTATGTACGATTGTACCTAAAATACCCGTATTCGTATATAGTAAGTTTTTTTATTTTTCGAGTTTATATTTAAGGACAAATTATATATATATAGTGGGGATAAAGTTCAGTTGTTAATTTTTTTTATGGGCTCAGGGGAGTGATAGATGTAGAAGACTCAAGTTATGTAGTAAGAGAACAAGATGCAATTTGGATGCTGAAATTGGTCCTACCTTATTTGAATGAATTCTTGTCAAAACTGAAAGCACTTTTCTCTGGAGATCCTGGCACCACAATGAAGGTAATTTAAGTAGTATATTCTTAATAACATTGAACACTTTATTAGCCAGCATAGATAGAAGAACCCTCTAAATGTGTACGAATTGCAGTTGGCAGTTTTGCTCTTTGTTTTGGCAAGATGTGGAAGTTTCATAACTATTTGGAAGATGGCTAAAATCGGTAAGTTTTTAAAGGCCTAACAAAATGATGGGTCTTTCTTTACACTTTCGCTTGATGTTTGATTACACTGACAGACAGACAAATGGTTGTGCTCAACTAACTCTAGTACTATTTCAGGCTTCTTTGGAGTTTTCATTGTACCAAAGATCTGCTCTTCGTATTCAGCACAATTAACTGCATATGGTAAATTTCCTGATTTTGATGAGTATAGGTTGATAGTGTAGAATAGATTAGACGGTGCGGTGCTTTCATGGGCCCACATTAGCCGATCGTGCATGCTTATATTTATACATATCTACTCTTTTATACGGATTATGATACCCTTCTGTCGGCATACACTAAATTTAGTTAAACAACATTAAATTTGTTTTTGTGGATTTTTTTTTTTTTGAGGAATTGTTTTTCTGGATTTTTAGAGTCAAAATCAACATATTTTGTACTATAATTTTTTCGATATAAATTTTAAACTCACAGATACATTAAATTAAATTCTTATATTGAAATTAACTCATTCTCTTATCACTTTTTTTTTTTTTTGAAAAGCCCTCTCTTATCACTTGTAAGGTAATGTCATTTTTTATAATAAATTCATTTTACATATTATGTTTATTTCATGCGAGTTTTGGATTTTTTCCAATACGACAAAGATATAAGGAAGGCAGAGAATCCATTTTTTATACACGTGATATTTATTTTATTTTAACCTTCTATTCTATGTTGACTCCAATGCATAGTAATAATGTAGATCTGACGGGTTCTATAAACAAAGATAAATTACTGTACTATATTTATTTTTATTGTTTACAAATTACTAGTACTATATAATTTAATATGCATAATGTTATTATTATTATTGCTAGTTTTAGGTTTGGTGTCAGTCTATTCGTATTTTTACGAAAAATAAATTTTATGAAATTTTGATTTAGCTTAAAATTATACATATTTTTCATTTTCAGGGTAATAATCTATACTTATTTTTTTTTAAAGAATAAACTATACTTATATTTTTCAATAACATAAAATATATCAAATATAATATTACATGTACTAATAATCAGAGAATAATTTTTTTTTTATCTTTTTAAATGACATCAACAATATATCATTCTTATAATTATGTTTGTTTAAAAGTATAATTGAAAGTAAAAAAAAATTATTATTTTTATAACAATTATACCTCATCGTCTCATCCAACGACAAAATCAAACTAGCTCTAAGTTGAGATCTTTTCTTTTTTGTTGTCTTTATAAAACATAATTAATAAATACATCACATGGATTAGCATCTTTGGTTTTCTTTTAGCCAATGGCGCAATCATGTTTTTTTTTTTTTTTTTCTGACAGTTTTGATCCCATTACTTGCATTGGGTCTCTTTTATTTTCGTGACAATTGTCTTTTATTTTGGTAAACTAGGGAACACAATTGTTGGATCATAATAATCGTAACATAATGGTCCTCCACATCCTTGTGGTCCCAATCCCAAAGTCAACAATACTGTGTTTCTTTTATGTGTTTACTATGCCTCTTTTGTCTTTACTTTTCGTGATCCCAGCCACTCCACTAGTATGATGAAAATTTATTATGTATAAATGCTTGCTACTTAATTAATCAATAGAAATATCCAGAGAGAGTCATTGGTTTTGCTATGTCATTCTACTTTCATAACTATATTTTGAAAATGATTATATAGGATGACCAATATGTCAATGTAAAACAATTTTACAAAGAAAAGACATGCTCTTTTAACTCGATTATTATTCTCTGATTCTACTGTACTAATTTTCATTGTTCTGAAATCTAATCTAATACATATAACTTTTAATTTGTTGATATGATAAAGCAAATTTTTGGATTCGTCGATTCCGGGATGCATGGGATTCATGCACTCACAAAAAAGCTGTGGCTCTAGGCATATTCGGTCTAGTATGGAATTTGTCATCTGTTGTTGCTCGCATTTGGGCAGGTAAATAAATTTTATTTTATTTACAATTTACAATATGTACGTATGTATGTACTAGACACTAGTTAAACTAATGTGTGGTGGTGTTGTGTTAAATTGCAGTGTTTGTACTATTTGTGGCATTCAGATACTATCAACAACACTATATGGTGAGGGATGAATGGGTGGAAGATGAAACAGGATGTGATGAAGCATGGGAAGAAGAACCAGTTAGACAGAAACAACACAACTTCGTTGCTACCAACAAAGTCAAGAAAGGATTCTAA

Protein sequence

>MS.gene68650.t1

MRFHHKNERRPVSVPLVVKQSPTIKRNSKIYQNFSKPNSSSVPKEEERSSFPKTQNKLQSLVDLIMWRDVSRSAFVFGIGTFVIVSSSYAKDINLSLISAMSYVGLVYLAVIFLYRSLICRGVIDVEDSSYVVREQDAIWMLKLVLPYLNEFLSKLKALFSGDPGTTMKLAVLLFVLARCGSFITIWKMAKIGFFGVFIVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYMVRDEWVEDETGCDEAWEEEPVRQKQHNFVATNKVKKGF