Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68650.t1 | XP_013464042.1 | 96.8 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 1.30E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68650.t1 | Q56X72 | 56.9 | 267 | 112 | 2 | 2 | 267 | 173 | 437 | 6.5e-80 | 298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68650.t1 | A0A072V8B4 | 96.8 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 9.2e-168 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051328 | MS.gene68650 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene68650 | 0.810906 | 9.13E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene68650 | 0.839582 | 1.45E-57 | -1.69E-46 |
| MS.gene053581 | MS.gene68650 | 0.810719 | 1.00E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene68650 | 0.831276 | 1.83E-55 | -1.69E-46 |
| MS.gene055144 | MS.gene68650 | 0.808401 | 3.15E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene68650 | 0.8098 | 1.58E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene68650 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene68650 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene056368 | MS.gene68650 | 0.801029 | 1.09E-48 | -1.69E-46 |
| MS.gene058722 | MS.gene68650 | 0.805151 | 1.53E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene68650 | 0.808998 | 2.35E-50 | -1.69E-46 |
| MS.gene058909 | MS.gene68650 | 0.809739 | 1.63E-50 | -1.69E-46 |
| MS.gene058912 | MS.gene68650 | 0.806009 | 1.01E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68650 | MS.gene35163 | PPI |
| MS.gene028296 | MS.gene68650 | PPI |
| MS.gene68650 | MS.gene36496 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68650.t1 | MTR_2g460800 | 96.764 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 0.0 | 636 |
| MS.gene68650.t1 | MTR_2g460800 | 95.853 | 217 | 9 | 0 | 1 | 217 | 268 | 484 | 2.01e-152 | 436 |
| MS.gene68650.t1 | MTR_4g078740 | 35.816 | 282 | 171 | 6 | 1 | 279 | 1 | 275 | 1.15e-47 | 162 |
| MS.gene68650.t1 | MTR_2g090620 | 36.864 | 236 | 144 | 3 | 59 | 292 | 137 | 369 | 1.99e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68650.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 2 | 272 | 173 | 441 | 8.57e-108 | 322 |
| MS.gene68650.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 2 | 272 | 279 | 547 | 1.22e-106 | 323 |
| MS.gene68650.t1 | AT2G20590 | 36.782 | 261 | 156 | 3 | 17 | 272 | 122 | 378 | 1.12e-46 | 163 |
| MS.gene68650.t1 | AT2G20590 | 37.500 | 240 | 139 | 3 | 43 | 272 | 127 | 365 | 2.25e-46 | 162 |
| MS.gene68650.t1 | AT4G28430 | 39.070 | 215 | 129 | 2 | 59 | 272 | 193 | 406 | 2.99e-40 | 146 |
| MS.gene68650.t1 | AT2G20590 | 36.816 | 201 | 118 | 3 | 17 | 212 | 122 | 318 | 4.42e-31 | 119 |
Find 57 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGGTTTGGAGAAATTT+TGG | 0.157130 | 2.4:-37395961 | None:intergenic |
| CTAGACTCTGCAACTTGTTT+TGG | 0.174874 | 2.4:-37396129 | None:intergenic |
| TGAAAATTTCTTACTTGAAT+TGG | 0.195478 | 2.4:-37395978 | None:intergenic |
| TCATTATTACCTGCAAATTA+AGG | 0.229353 | 2.4:-37396886 | None:intergenic |
| AGTACTATTTCAGGCTTCTT+TGG | 0.243221 | 2.4:+37397606 | MS.gene68650:intron |
| CTACTGCGTTCTTCTTCTTT+TGG | 0.250422 | 2.4:-37396094 | None:intergenic |
| GTGGAAGTTTCATAACTATT+TGG | 0.254654 | 2.4:+37397463 | MS.gene68650:CDS |
| TTGTGTTGTTTCTGTCTAAC+TGG | 0.259168 | 2.4:-37399668 | None:intergenic |
| TCTATAGATCCTTAATTTGC+AGG | 0.277885 | 2.4:+37396877 | MS.gene68650:CDS |
| GACAAGAATTCATTCAAATA+AGG | 0.278389 | 2.4:-37397275 | None:intergenic |
| CAAGATCAGCATTTGTGTTT+GGG | 0.280922 | 2.4:+37396267 | MS.gene68650:CDS |
| CATCTGTTGTTGCTCGCATT+TGG | 0.323883 | 2.4:+37399438 | MS.gene68650:CDS |
| TGCAATTTGGATGCTGAAAT+TGG | 0.325517 | 2.4:+37397247 | MS.gene68650:CDS |
| TCAAGATCAGCATTTGTGTT+TGG | 0.329810 | 2.4:+37396266 | MS.gene68650:CDS |
| GAAAATTTCTTACTTGAATT+GGG | 0.330039 | 2.4:-37395977 | None:intergenic |
| TTTCTTACTTGAATTGGGTT+TGG | 0.336832 | 2.4:-37395972 | None:intergenic |
| GAATCCTTTCTTGACTTTGT+TGG | 0.339840 | 2.4:-37399702 | None:intergenic |
| TAAGAGAACAAGATGCAATT+TGG | 0.344866 | 2.4:+37397234 | MS.gene68650:CDS |
| ATACTATCAACAACACTATA+TGG | 0.360600 | 2.4:+37399589 | MS.gene68650:CDS |
| TAGGCATATTCGGTCTAGTA+TGG | 0.366112 | 2.4:+37399408 | MS.gene68650:CDS |
| ACTACAAGAGGAACAGAAAC+TGG | 0.385936 | 2.4:-37395899 | None:intergenic |
| ATCTGTTGTTGCTCGCATTT+GGG | 0.390664 | 2.4:+37399439 | MS.gene68650:CDS |
| TCAGCATTTGTGTTTGGGAT+TGG | 0.406573 | 2.4:+37396272 | MS.gene68650:CDS |
| TTTCATAACTATTTGGAAGA+TGG | 0.416263 | 2.4:+37397470 | MS.gene68650:CDS |
| TGCAGTGTTTGTACTATTTG+TGG | 0.423837 | 2.4:+37399559 | MS.gene68650:intron |
| GAATACGAAGAGCAGATCTT+TGG | 0.436812 | 2.4:-37397642 | None:intergenic |
| GCTGTGGCTCTAGGCATATT+CGG | 0.445263 | 2.4:+37399398 | MS.gene68650:CDS |
| ATTACCTTCATTGTGGTGCC+AGG | 0.452683 | 2.4:-37397326 | None:intergenic |
| TCAGCACAATTAACTGCATA+TGG | 0.452909 | 2.4:+37397663 | MS.gene68650:CDS |
| ATTTCTGCAATGTCCTATGT+AGG | 0.468181 | 2.4:+37396828 | MS.gene68650:CDS |
| ATTTGGAAGATGGCTAAAAT+CGG | 0.474250 | 2.4:+37397480 | MS.gene68650:CDS |
| TCGTCGATTCCGGGATGCAT+GGG | 0.478641 | 2.4:+37399355 | MS.gene68650:CDS |
| GTTGTTGCTCGCATTTGGGC+AGG | 0.478972 | 2.4:+37399443 | MS.gene68650:CDS |
| GAATGGGTGGAAGATGAAAC+AGG | 0.491736 | 2.4:+37399620 | MS.gene68650:CDS |
| AAGTCAAGAAAGGATTCTAA+AGG | 0.492545 | 2.4:+37399708 | MS.gene68650:CDS |
| ACTATATGGTGAGGGATGAA+TGG | 0.492619 | 2.4:+37399603 | MS.gene68650:CDS |
| TTCGTCGATTCCGGGATGCA+TGG | 0.499984 | 2.4:+37399354 | MS.gene68650:CDS |
| AACAATCCCCTACAATCAAA+AGG | 0.507778 | 2.4:+37395924 | MS.gene68650:CDS |
| ATGCAAAGGATATCAATTTG+AGG | 0.510644 | 2.4:+37396321 | MS.gene68650:CDS |
| TGCAAATTAAGGATCTATAG+AGG | 0.521117 | 2.4:-37396875 | None:intergenic |
| CTATATGGTGAGGGATGAAT+GGG | 0.530924 | 2.4:+37399604 | MS.gene68650:CDS |
| AAGATAGACAAGGCCTACAT+AGG | 0.541659 | 2.4:-37396841 | None:intergenic |
| GGGGATTGTTTCACTACAAG+AGG | 0.543889 | 2.4:-37395911 | None:intergenic |
| GCTACCAACAAAGTCAAGAA+AGG | 0.545347 | 2.4:+37399698 | MS.gene68650:CDS |
| TACTTAAATTACCTTCATTG+TGG | 0.555434 | 2.4:-37397333 | None:intergenic |
| AGATCCTGGCACCACAATGA+AGG | 0.555506 | 2.4:+37397322 | MS.gene68650:CDS |
| CAAAACAAGTTGCAGAGTCT+AGG | 0.557021 | 2.4:+37396130 | MS.gene68650:CDS |
| AGTCTCATCTTCTTATGCAA+AGG | 0.559905 | 2.4:+37396307 | MS.gene68650:CDS |
| TGCATGAATCCCATGCATCC+CGG | 0.564871 | 2.4:-37399364 | None:intergenic |
| AGAATTCATTCAAATAAGGT+AGG | 0.591737 | 2.4:-37397271 | None:intergenic |
| CAACAGTGGATTTAATAATG+TGG | 0.598108 | 2.4:+37396234 | MS.gene68650:intron |
| AAACAGGATGTGATGAAGCA+TGG | 0.601103 | 2.4:+37399636 | MS.gene68650:CDS |
| TATGGTGAGGGATGAATGGG+TGG | 0.602229 | 2.4:+37399607 | MS.gene68650:CDS |
| ATCAACAACACTATATGGTG+AGG | 0.602777 | 2.4:+37399594 | MS.gene68650:CDS |
| AACAGGATGTGATGAAGCAT+GGG | 0.612508 | 2.4:+37399637 | MS.gene68650:CDS |
| TCAACAACACTATATGGTGA+GGG | 0.642871 | 2.4:+37399595 | MS.gene68650:CDS |
| AGATAACTGCAAGATAGACA+AGG | 0.714341 | 2.4:-37396851 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTATATATATATAGT+GGG | + | chr2.4:37397139-37397158 | MS.gene68650:intron | 10.0% |
| !!! | TATTTTGAAAATGATTATAT+AGG | + | chr2.4:37399170-37399189 | MS.gene68650:intron | 10.0% |
| !! | ATAATGCAAATATTCTAAAT+AGG | - | chr2.4:37396535-37396554 | None:intergenic | 15.0% |
| !! | CAAATTATATATATATAGTG+GGG | + | chr2.4:37397140-37397159 | MS.gene68650:intron | 15.0% |
| !! | GACAAATTATATATATATAG+TGG | + | chr2.4:37397138-37397157 | MS.gene68650:intron | 15.0% |
| !! | TAATTAATAAATACATCACA+TGG | + | chr2.4:37398756-37398775 | MS.gene68650:intron | 15.0% |
| !!! | ATACATATTTTTCATTTTCA+GGG | + | chr2.4:37398437-37398456 | MS.gene68650:intron | 15.0% |
| !!! | ATTTTTCGAGTTTATATTTA+AGG | + | chr2.4:37397116-37397135 | MS.gene68650:intron | 15.0% |
| !!! | CAGTTGTTAATTTTTTTTAT+GGG | + | chr2.4:37397171-37397190 | MS.gene68650:intron | 15.0% |
| !!! | TATACATATTTTTCATTTTC+AGG | + | chr2.4:37398436-37398455 | MS.gene68650:intron | 15.0% |
| !!! | TCAGTTGTTAATTTTTTTTA+TGG | + | chr2.4:37397170-37397189 | MS.gene68650:intron | 15.0% |
| !!! | TTATTATTATTGCTAGTTTT+AGG | + | chr2.4:37398346-37398365 | MS.gene68650:intron | 15.0% |
| !! | AAACTTACTATATACGAATA+CGG | - | chr2.4:37397092-37397111 | None:intergenic | 20.0% |
| !! | AATATCACGTGTATAAAAAA+TGG | - | chr2.4:37398172-37398191 | None:intergenic | 20.0% |
| !! | GAAAATTTCTTACTTGAATT+GGG | - | chr2.4:37395980-37395999 | None:intergenic | 20.0% |
| !! | TCATAATAATCGTAACATAA+TGG | + | chr2.4:37398932-37398951 | MS.gene68650:intron | 20.0% |
| !! | TGAAAATTTCTTACTTGAAT+TGG | - | chr2.4:37395981-37396000 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | + | chr2.4:37396455-37396474 | MS.gene68650:intron | 20.0% |
| !!! | ATAAATTTTCATCATACTAG+TGG | - | chr2.4:37399062-37399081 | None:intergenic | 20.0% |
| !!! | ATTGTTTTACATTGACATAT+TGG | - | chr2.4:37399200-37399219 | None:intergenic | 20.0% |
| !!! | CAACATTAAATTTGTTTTTG+TGG | + | chr2.4:37397855-37397874 | MS.gene68650:intron | 20.0% |
| !!! | CAATATAACTTTTACTGTTT+CGG | + | chr2.4:37396769-37396788 | MS.gene68650:intron | 20.0% |
| !!! | CAGTCAATTTTGTAATTTTT+GGG | + | chr2.4:37396009-37396028 | MS.gene68650:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | + | chr2.4:37396456-37396475 | MS.gene68650:intron | 20.0% |
| !!! | GATATGATAAAGCAAATTTT+TGG | + | chr2.4:37399330-37399349 | MS.gene68650:intron | 20.0% |
| !!! | TAAAATCGGTAAGTTTTTAA+AGG | + | chr2.4:37397494-37397513 | MS.gene68650:intron | 20.0% |
| !!! | TACATATCTACTCTTTTATA+CGG | + | chr2.4:37397790-37397809 | MS.gene68650:intron | 20.0% |
| !!! | TCAGTCAATTTTGTAATTTT+TGG | + | chr2.4:37396008-37396027 | MS.gene68650:intron | 20.0% |
| !!! | TCTTTTATTTTGGTAAACTA+GGG | + | chr2.4:37398894-37398913 | MS.gene68650:intron | 20.0% |
| !!! | TGTGGATTTTTTTTTTTTTG+AGG | + | chr2.4:37397873-37397892 | MS.gene68650:intron | 20.0% |
| !!! | TGTGTTTTACTAATCTTTTA+AGG | + | chr2.4:37396064-37396083 | MS.gene68650:intron | 20.0% |
| ! | AACTTACTATATACGAATAC+GGG | - | chr2.4:37397091-37397110 | None:intergenic | 25.0% |
| ! | ACATTAATTACATTATCAGC+GGG | - | chr2.4:37397037-37397056 | None:intergenic | 25.0% |
| ! | ACTGCATTGTTAAATTAGTT+GGG | + | chr2.4:37396942-37396961 | MS.gene68650:intron | 25.0% |
| ! | AGAATTCATTCAAATAAGGT+AGG | - | chr2.4:37397274-37397293 | None:intergenic | 25.0% |
| ! | ATACTATCAACAACACTATA+TGG | + | chr2.4:37399589-37399608 | MS.gene68650:CDS | 25.0% |
| ! | ATAGTGTAGAATAGATTAGA+CGG | + | chr2.4:37397717-37397736 | MS.gene68650:intron | 25.0% |
| ! | CACATTAATTACATTATCAG+CGG | - | chr2.4:37397038-37397057 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | - | chr2.4:37396459-37396478 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr2.4:37396521-37396540 | None:intergenic | 25.0% |
| ! | GACAAGAATTCATTCAAATA+AGG | - | chr2.4:37397278-37397297 | None:intergenic | 25.0% |
| ! | TACTGCATTGTTAAATTAGT+TGG | + | chr2.4:37396941-37396960 | MS.gene68650:intron | 25.0% |
| ! | TACTTAAATTACCTTCATTG+TGG | - | chr2.4:37397336-37397355 | None:intergenic | 25.0% |
| ! | TAGTAATAATGTAGATCTGA+CGG | + | chr2.4:37398233-37398252 | MS.gene68650:intron | 25.0% |
| ! | TCAACATAAATTGTTGGATT+TGG | + | chr2.4:37396398-37396417 | MS.gene68650:intron | 25.0% |
| ! | TCATTATTACCTGCAAATTA+AGG | - | chr2.4:37396889-37396908 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr2.4:37396522-37396541 | None:intergenic | 25.0% |
| ! | TCTACATTATTACTATGCAT+TGG | - | chr2.4:37398228-37398247 | None:intergenic | 25.0% |
| ! | TTTCATAACTATTTGGAAGA+TGG | + | chr2.4:37397470-37397489 | MS.gene68650:CDS | 25.0% |
| !!! | ATTATTGCTAGTTTTAGGTT+TGG | + | chr2.4:37398351-37398370 | MS.gene68650:intron | 25.0% |
| !!! | GTCTTTTATTTTGGTAAACT+AGG | + | chr2.4:37398893-37398912 | MS.gene68650:intron | 25.0% |
| !!! | GTGACAATTGTCTTTTATTT+TGG | + | chr2.4:37398884-37398903 | MS.gene68650:intron | 25.0% |
| !!! | TAATTTTTTTTATGGGCTCA+GGG | + | chr2.4:37397178-37397197 | MS.gene68650:intron | 25.0% |
| !!! | TTAATTTTTTTTATGGGCTC+AGG | + | chr2.4:37397177-37397196 | MS.gene68650:intron | 25.0% |
| !!! | TTGAATTCCTTTTGATTGTA+GGG | - | chr2.4:37395934-37395953 | None:intergenic | 25.0% |
| !!! | TTTGAATTCCTTTTGATTGT+AGG | - | chr2.4:37395935-37395954 | None:intergenic | 25.0% |
| !!! | TTTTTGAGGAATTGTTTTTC+TGG | + | chr2.4:37397887-37397906 | MS.gene68650:intron | 25.0% |
| AAATAAGACTGCAAAAAGCA+AGG | - | chr2.4:37396812-37396831 | None:intergenic | 30.0% | |
| AACCTATACTCATCAAAATC+AGG | - | chr2.4:37397696-37397715 | None:intergenic | 30.0% | |
| AACTGGTCAACATAAATTGT+TGG | + | chr2.4:37396392-37396411 | MS.gene68650:intron | 30.0% | |
| AATAAGACTGCAAAAAGCAA+GGG | - | chr2.4:37396811-37396830 | None:intergenic | 30.0% | |
| ACACTAGTTAAACTAATGTG+TGG | + | chr2.4:37399520-37399539 | MS.gene68650:intron | 30.0% | |
| ACGAAAAGTAAAGACAAAAG+AGG | - | chr2.4:37399026-37399045 | None:intergenic | 30.0% | |
| ACTAACTCTAGTACTATTTC+AGG | + | chr2.4:37397597-37397616 | MS.gene68650:intron | 30.0% | |
| AGTAATAATGTAGATCTGAC+GGG | + | chr2.4:37398234-37398253 | MS.gene68650:intron | 30.0% | |
| ATACGACAAAGATATAAGGA+AGG | + | chr2.4:37398138-37398157 | MS.gene68650:intron | 30.0% | |
| ATGCAAAGGATATCAATTTG+AGG | + | chr2.4:37396321-37396340 | MS.gene68650:CDS | 30.0% | |
| ATTTGGAAGATGGCTAAAAT+CGG | + | chr2.4:37397480-37397499 | MS.gene68650:CDS | 30.0% | |
| CATTATTAAATCCACTGTTG+AGG | - | chr2.4:37396234-37396253 | None:intergenic | 30.0% | |
| GGTCAACAAAACAATGTATT+TGG | - | chr2.4:37396438-37396457 | None:intergenic | 30.0% | |
| GTGGAAGTTTCATAACTATT+TGG | + | chr2.4:37397463-37397482 | MS.gene68650:CDS | 30.0% | |
| TAAAGGCCTAACAAAATGAT+GGG | + | chr2.4:37397511-37397530 | MS.gene68650:intron | 30.0% | |
| TAAATATAAGCATGCACGAT+CGG | - | chr2.4:37397770-37397789 | None:intergenic | 30.0% | |
| TAAGAGAACAAGATGCAATT+TGG | + | chr2.4:37397234-37397253 | MS.gene68650:CDS | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr2.4:37396734-37396753 | MS.gene68650:intron | 30.0% | |
| TCCAATACGACAAAGATATA+AGG | + | chr2.4:37398134-37398153 | MS.gene68650:intron | 30.0% | |
| TCCTTATATCTTTGTCGTAT+TGG | - | chr2.4:37398138-37398157 | None:intergenic | 30.0% | |
| TGCAAATTAAGGATCTATAG+AGG | - | chr2.4:37396878-37396897 | None:intergenic | 30.0% | |
| TTAAAGGCCTAACAAAATGA+TGG | + | chr2.4:37397510-37397529 | MS.gene68650:intron | 30.0% | |
| TTATAATTTCTCCTCAACAG+TGG | + | chr2.4:37396220-37396239 | MS.gene68650:intron | 30.0% | |
| TTTCTTACTTGAATTGGGTT+TGG | - | chr2.4:37395975-37395994 | None:intergenic | 30.0% | |
| ! | AATTGGGTTTGGAGAAATTT+TGG | - | chr2.4:37395964-37395983 | None:intergenic | 30.0% |
| ! | CAACAGTGGATTTAATAATG+TGG | + | chr2.4:37396234-37396253 | MS.gene68650:intron | 30.0% |
| ! | TATACGAATACGGGTATTTT+AGG | - | chr2.4:37397082-37397101 | None:intergenic | 30.0% |
| ! | TGTTTATTTCATGCGAGTTT+TGG | + | chr2.4:37398105-37398124 | MS.gene68650:intron | 30.0% |
| !! | AAACACAGTATTGTTGACTT+TGG | - | chr2.4:37398984-37399003 | None:intergenic | 30.0% |
| !! | AACACAGTATTGTTGACTTT+GGG | - | chr2.4:37398983-37399002 | None:intergenic | 30.0% |
| !! | TCTATAGATCCTTAATTTGC+AGG | + | chr2.4:37396877-37396896 | MS.gene68650:CDS | 30.0% |
| !! | TGAATTCCTTTTGATTGTAG+GGG | - | chr2.4:37395933-37395952 | None:intergenic | 30.0% |
| !! | TTCCTGATTTTGATGAGTAT+AGG | + | chr2.4:37397691-37397710 | MS.gene68650:intron | 30.0% |
| !!! | AATTTTTTTTATGGGCTCAG+GGG | + | chr2.4:37397179-37397198 | MS.gene68650:intron | 30.0% |
| !!! | CACACACATTTTCTAAAGTT+AGG | - | chr2.4:37396048-37396067 | None:intergenic | 30.0% |
| !!! | TTGCTTATATTTTGGGACTA+AGG | + | chr2.4:37396463-37396482 | MS.gene68650:intron | 30.0% |
| !!! | TTTGGTTTTCTTTTAGCCAA+TGG | + | chr2.4:37398788-37398807 | MS.gene68650:intron | 30.0% |
| AAAAAACATGATTGCGCCAT+TGG | - | chr2.4:37398807-37398826 | None:intergenic | 35.0% | |
| AAACTAGGGAACACAATTGT+TGG | + | chr2.4:37398908-37398927 | MS.gene68650:intron | 35.0% | |
| AAATATCCAGAGAGAGTCAT+TGG | + | chr2.4:37399117-37399136 | MS.gene68650:intron | 35.0% | |
| AAATGTGTACGAATTGCAGT+TGG | + | chr2.4:37397413-37397432 | MS.gene68650:intron | 35.0% | |
| AACAATCCCCTACAATCAAA+AGG | + | chr2.4:37395924-37395943 | MS.gene68650:CDS | 35.0% | |
| ACCTTACAAGTGATAAGAGA+GGG | - | chr2.4:37398048-37398067 | None:intergenic | 35.0% | |
| AGATAACTGCAAGATAGACA+AGG | - | chr2.4:37396854-37396873 | None:intergenic | 35.0% | |
| AGTACTATTTCAGGCTTCTT+TGG | + | chr2.4:37397606-37397625 | MS.gene68650:intron | 35.0% | |
| AGTCTCATCTTCTTATGCAA+AGG | + | chr2.4:37396307-37396326 | MS.gene68650:CDS | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr2.4:37396517-37396536 | None:intergenic | 35.0% | |
| ATCAACAACACTATATGGTG+AGG | + | chr2.4:37399594-37399613 | MS.gene68650:CDS | 35.0% | |
| ATTTCTGCAATGTCCTATGT+AGG | + | chr2.4:37396828-37396847 | MS.gene68650:CDS | 35.0% | |
| CAAGATCAGCATTTGTGTTT+GGG | + | chr2.4:37396267-37396286 | MS.gene68650:CDS | 35.0% | |
| CCTACGTGTTAAAATTAGAG+TGG | - | chr2.4:37396975-37396994 | None:intergenic | 35.0% | |
| CTAGTTAAACTAATGTGTGG+TGG | + | chr2.4:37399523-37399542 | MS.gene68650:intron | 35.0% | |
| GAATCCTTTCTTGACTTTGT+TGG | - | chr2.4:37399705-37399724 | None:intergenic | 35.0% | |
| GCAATTCGTACACATTTAGA+GGG | - | chr2.4:37397410-37397429 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr2.4:37396733-37396752 | MS.gene68650:intron | 35.0% | |
| TACCTTACAAGTGATAAGAG+AGG | - | chr2.4:37398049-37398068 | None:intergenic | 35.0% | |
| TCAACAACACTATATGGTGA+GGG | + | chr2.4:37399595-37399614 | MS.gene68650:CDS | 35.0% | |
| TCAAGATCAGCATTTGTGTT+TGG | + | chr2.4:37396266-37396285 | MS.gene68650:CDS | 35.0% | |
| TCAGCACAATTAACTGCATA+TGG | + | chr2.4:37397663-37397682 | MS.gene68650:CDS | 35.0% | |
| TCCAAAATGTAAGCACAAAC+TGG | + | chr2.4:37396375-37396394 | MS.gene68650:intron | 35.0% | |
| TGCAATTCGTACACATTTAG+AGG | - | chr2.4:37397411-37397430 | None:intergenic | 35.0% | |
| TGCAATTTGGATGCTGAAAT+TGG | + | chr2.4:37397247-37397266 | MS.gene68650:CDS | 35.0% | |
| TGCAGTGTTTGTACTATTTG+TGG | + | chr2.4:37399559-37399578 | MS.gene68650:intron | 35.0% | |
| TGGAGTCAACATAGAATAGA+AGG | - | chr2.4:37398208-37398227 | None:intergenic | 35.0% | |
| TTAATTACATTATCAGCGGG+TGG | - | chr2.4:37397034-37397053 | None:intergenic | 35.0% | |
| TTGATCCCATTACTTGCATT+GGG | + | chr2.4:37398847-37398866 | MS.gene68650:intron | 35.0% | |
| TTTGATCCCATTACTTGCAT+TGG | + | chr2.4:37398846-37398865 | MS.gene68650:intron | 35.0% | |
| ! | ACCAGTTTGTGCTTACATTT+TGG | - | chr2.4:37396379-37396398 | None:intergenic | 35.0% |
| ! | GAAAGACCCATCATTTTGTT+AGG | - | chr2.4:37397520-37397539 | None:intergenic | 35.0% |
| ! | TTTTCATCATACTAGTGGAG+TGG | - | chr2.4:37399057-37399076 | None:intergenic | 35.0% |
| !! | AGCTAGTTTGATTTTGTCGT+TGG | - | chr2.4:37398695-37398714 | None:intergenic | 35.0% |
| !! | AGTATTGTTGACTTTGGGAT+TGG | - | chr2.4:37398978-37398997 | None:intergenic | 35.0% |
| !! | ATCACATGGATTAGCATCTT+TGG | + | chr2.4:37398770-37398789 | MS.gene68650:intron | 35.0% |
| !! | CCACTCTAATTTTAACACGT+AGG | + | chr2.4:37396972-37396991 | MS.gene68650:intron | 35.0% |
| !! | GTATTGTTGACTTTGGGATT+GGG | - | chr2.4:37398977-37398996 | None:intergenic | 35.0% |
| !! | TAGACTCTGCAACTTGTTTT+GGG | - | chr2.4:37396131-37396150 | None:intergenic | 35.0% |
| !! | TTGTGTTGTTTCTGTCTAAC+TGG | - | chr2.4:37399671-37399690 | None:intergenic | 35.0% |
| !!! | AAACTGAAAGCACTTTTCTC+TGG | + | chr2.4:37397299-37397318 | MS.gene68650:CDS | 35.0% |
| !!! | ATTTTTGGATTCGTCGATTC+CGG | + | chr2.4:37399345-37399364 | MS.gene68650:CDS | 35.0% |
| !!! | TGCAACTTGTTTTGGGTTTT+TGG | - | chr2.4:37396124-37396143 | None:intergenic | 35.0% |
| !!! | TGCTTACATTTTGGAATCGA+GGG | - | chr2.4:37396370-37396389 | None:intergenic | 35.0% |
| AAACAGGATGTGATGAAGCA+TGG | + | chr2.4:37399636-37399655 | MS.gene68650:CDS | 40.0% | |
| AACAGGATGTGATGAAGCAT+GGG | + | chr2.4:37399637-37399656 | MS.gene68650:CDS | 40.0% | |
| AAGAGACCCAATGCAAGTAA+TGG | - | chr2.4:37398856-37398875 | None:intergenic | 40.0% | |
| AAGATAGACAAGGCCTACAT+AGG | - | chr2.4:37396844-37396863 | None:intergenic | 40.0% | |
| ACTACAAGAGGAACAGAAAC+TGG | - | chr2.4:37395902-37395921 | None:intergenic | 40.0% | |
| ACTATATGGTGAGGGATGAA+TGG | + | chr2.4:37399603-37399622 | MS.gene68650:CDS | 40.0% | |
| AGAGACCCAATGCAAGTAAT+GGG | - | chr2.4:37398855-37398874 | None:intergenic | 40.0% | |
| ATCTGTTGTTGCTCGCATTT+GGG | + | chr2.4:37399439-37399458 | MS.gene68650:CDS | 40.0% | |
| ATGCACTCACAAAAAAGCTG+TGG | + | chr2.4:37399382-37399401 | MS.gene68650:CDS | 40.0% | |
| ATTTAGTGTATGCCGACAGA+AGG | - | chr2.4:37397826-37397845 | None:intergenic | 40.0% | |
| CAAAACAAGTTGCAGAGTCT+AGG | + | chr2.4:37396130-37396149 | MS.gene68650:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr2.4:37396738-37396757 | MS.gene68650:intron | 40.0% | |
| CTATATGGTGAGGGATGAAT+GGG | + | chr2.4:37399604-37399623 | MS.gene68650:CDS | 40.0% | |
| GAATACGAAGAGCAGATCTT+TGG | - | chr2.4:37397645-37397664 | None:intergenic | 40.0% | |
| GCTACCAACAAAGTCAAGAA+AGG | + | chr2.4:37399698-37399717 | MS.gene68650:CDS | 40.0% | |
| GGATTATGATACCCTTCTGT+CGG | + | chr2.4:37397811-37397830 | MS.gene68650:intron | 40.0% | |
| GTAGAATAGATTAGACGGTG+CGG | + | chr2.4:37397722-37397741 | MS.gene68650:intron | 40.0% | |
| TACACTGACAGACAGACAAA+TGG | + | chr2.4:37397565-37397584 | MS.gene68650:intron | 40.0% | |
| TAGGCATATTCGGTCTAGTA+TGG | + | chr2.4:37399408-37399427 | MS.gene68650:CDS | 40.0% | |
| TTTAGTGTATGCCGACAGAA+GGG | - | chr2.4:37397825-37397844 | None:intergenic | 40.0% | |
| ! | CTACTGCGTTCTTCTTCTTT+TGG | - | chr2.4:37396097-37396116 | None:intergenic | 40.0% |
| ! | TCAGCATTTGTGTTTGGGAT+TGG | + | chr2.4:37396272-37396291 | MS.gene68650:CDS | 40.0% |
| !! | CTAGACTCTGCAACTTGTTT+TGG | - | chr2.4:37396132-37396151 | None:intergenic | 40.0% |
| !! | GGCAGTTTTGCTCTTTGTTT+TGG | + | chr2.4:37397434-37397453 | MS.gene68650:CDS | 40.0% |
| !!! | CTCTTTGTTTTGGCAAGATG+TGG | + | chr2.4:37397444-37397463 | MS.gene68650:CDS | 40.0% |
| !!! | GTGCTTACATTTTGGAATCG+AGG | - | chr2.4:37396371-37396390 | None:intergenic | 40.0% |
| !!! | TTTTTGGATTCGTCGATTCC+GGG | + | chr2.4:37399346-37399365 | MS.gene68650:CDS | 40.0% |
| ATCATACTAGTGGAGTGGCT+GGG | - | chr2.4:37399052-37399071 | None:intergenic | 45.0% | |
| ATTACCTTCATTGTGGTGCC+AGG | - | chr2.4:37397329-37397348 | None:intergenic | 45.0% | |
| CACAAAAAAGCTGTGGCTCT+AGG | + | chr2.4:37399389-37399408 | MS.gene68650:CDS | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr2.4:37396720-37396739 | MS.gene68650:intron | 45.0% | |
| CATCTGTTGTTGCTCGCATT+TGG | + | chr2.4:37399438-37399457 | MS.gene68650:CDS | 45.0% | |
| GAATGGGTGGAAGATGAAAC+AGG | + | chr2.4:37399620-37399639 | MS.gene68650:CDS | 45.0% | |
| GAGGGTTCTTCTATCTATGC+TGG | - | chr2.4:37397392-37397411 | None:intergenic | 45.0% | |
| GCAAAACCAATGACTCTCTC+TGG | - | chr2.4:37399126-37399145 | None:intergenic | 45.0% | |
| GCCCTCTCTTATCACTTGTA+AGG | + | chr2.4:37398044-37398063 | MS.gene68650:intron | 45.0% | |
| GGGGATTGTTTCACTACAAG+AGG | - | chr2.4:37395914-37395933 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2.4:37396742-37396761 | MS.gene68650:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2.4:37396761-37396742 | None:intergenic | 45.0% | |
| AATGGTCCTCCACATCCTTG+TGG | + | chr2.4:37398950-37398969 | MS.gene68650:intron | 50.0% | |
| AGATCCTGGCACCACAATGA+AGG | + | chr2.4:37397322-37397341 | MS.gene68650:CDS | 50.0% | |
| CATCATACTAGTGGAGTGGC+TGG | - | chr2.4:37399053-37399072 | None:intergenic | 50.0% | |
| CATGCACGATCGGCTAATGT+GGG | - | chr2.4:37397760-37397779 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2.4:37396741-37396760 | MS.gene68650:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2.4:37396760-37396741 | None:intergenic | 50.0% | |
| TATGGTGAGGGATGAATGGG+TGG | + | chr2.4:37399607-37399626 | MS.gene68650:CDS | 50.0% | |
| TGCATGAATCCCATGCATCC+CGG | - | chr2.4:37399367-37399386 | None:intergenic | 50.0% | |
| TGTCGTTGGATGAGACGATG+AGG | - | chr2.4:37398681-37398700 | None:intergenic | 50.0% | |
| !! | ACTTTGGGATTGGGACCACA+AGG | - | chr2.4:37398968-37398987 | None:intergenic | 50.0% |
| !! | GCACTTTTCTCTGGAGATCC+TGG | + | chr2.4:37397308-37397327 | MS.gene68650:CDS | 50.0% |
| !! | GCTGTGGCTCTAGGCATATT+CGG | + | chr2.4:37399398-37399417 | MS.gene68650:CDS | 50.0% |
| AGACGGTGCGGTGCTTTCAT+GGG | + | chr2.4:37397734-37397753 | MS.gene68650:intron | 55.0% | |
| GCATGCACGATCGGCTAATG+TGG | - | chr2.4:37397761-37397780 | None:intergenic | 55.0% | |
| GGATTGGGACCACAAGGATG+TGG | - | chr2.4:37398962-37398981 | None:intergenic | 55.0% | |
| GTTGTTGCTCGCATTTGGGC+AGG | + | chr2.4:37399443-37399462 | MS.gene68650:CDS | 55.0% | |
| TAGACGGTGCGGTGCTTTCA+TGG | + | chr2.4:37397733-37397752 | MS.gene68650:intron | 55.0% | |
| TTGGGACCACAAGGATGTGG+AGG | - | chr2.4:37398959-37398978 | None:intergenic | 55.0% | |
| !! | TCGTCGATTCCGGGATGCAT+GGG | + | chr2.4:37399355-37399374 | MS.gene68650:CDS | 55.0% |
| !! | TTCGTCGATTCCGGGATGCA+TGG | + | chr2.4:37399354-37399373 | MS.gene68650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37395869 | 37399727 | 37395869 | ID=MS.gene68650 |
| chr2.4 | mRNA | 37395869 | 37399727 | 37395869 | ID=MS.gene68650.t1;Parent=MS.gene68650 |
| chr2.4 | exon | 37395869 | 37395986 | 37395869 | ID=MS.gene68650.t1.exon1;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37395869 | 37395986 | 37395869 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37396086 | 37396151 | 37396086 | ID=MS.gene68650.t1.exon2;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37396086 | 37396151 | 37396086 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37396240 | 37396342 | 37396240 | ID=MS.gene68650.t1.exon3;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37396240 | 37396342 | 37396240 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37396824 | 37396898 | 37396824 | ID=MS.gene68650.t1.exon4;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37396824 | 37396898 | 37396824 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37397199 | 37397343 | 37397199 | ID=MS.gene68650.t1.exon5;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37397199 | 37397343 | 37397199 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37397432 | 37397501 | 37397432 | ID=MS.gene68650.t1.exon6;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37397432 | 37397501 | 37397432 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37397619 | 37397684 | 37397619 | ID=MS.gene68650.t1.exon7;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37397619 | 37397684 | 37397619 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37399342 | 37399464 | 37399342 | ID=MS.gene68650.t1.exon8;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37399342 | 37399464 | 37399342 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| chr2.4 | exon | 37399564 | 37399727 | 37399564 | ID=MS.gene68650.t1.exon9;Parent=MS.gene68650.t1 |
| chr2.4 | CDS | 37399564 | 37399727 | 37399564 | ID=cds.MS.gene68650.t1;Parent=MS.gene68650.t1 |
| Gene Sequence |
| Protein sequence |
