Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059183.t1 | XP_024636707.1 | 95 | 338 | 1 | 1 | 1 | 322 | 1 | 338 | 1.20E-176 | 629 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059183.t1 | P46637 | 81.1 | 338 | 45 | 2 | 4 | 322 | 5 | 342 | 5.1e-152 | 538.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059183.t1 | I3SM21 | 95.0 | 338 | 1 | 1 | 1 | 322 | 1 | 338 | 8.6e-177 | 629.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56256 | MS.gene059183 | PPI |
| MS.gene51627 | MS.gene059183 | PPI |
| MS.gene009458 | MS.gene059183 | PPI |
| MS.gene059183 | MS.gene45808 | PPI |
| MS.gene48211 | MS.gene059183 | PPI |
| MS.gene45808 | MS.gene059183 | PPI |
| MS.gene48960 | MS.gene059183 | PPI |
| MS.gene63514 | MS.gene059183 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059183.t1 | MTR_4g024960 | 76.923 | 338 | 62 | 1 | 1 | 322 | 1 | 338 | 0.0 | 530 |
| MS.gene059183.t1 | MTR_4g024940 | 92.641 | 231 | 1 | 1 | 1 | 215 | 6 | 236 | 2.68e-153 | 429 |
| MS.gene059183.t1 | MTR_0088s0100 | 48.656 | 372 | 130 | 7 | 1 | 322 | 2 | 362 | 4.44e-105 | 311 |
| MS.gene059183.t1 | MTR_4g019730 | 79.070 | 43 | 9 | 0 | 194 | 236 | 51 | 93 | 8.30e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059183.t1 | AT4G08900 | 81.065 | 338 | 45 | 2 | 4 | 322 | 5 | 342 | 0.0 | 554 |
| MS.gene059183.t1 | AT4G08870 | 73.837 | 344 | 68 | 2 | 1 | 322 | 1 | 344 | 0.0 | 521 |
| MS.gene059183.t1 | AT4G08870 | 69.767 | 258 | 56 | 2 | 1 | 236 | 1 | 258 | 8.20e-130 | 371 |
Find 80 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATCAATTACACGATTT+TGG | 0.183005 | 4.1:-73832726 | None:intergenic |
| TCAAATTCATCATAGTTATC+AGG | 0.221630 | 4.1:-73834119 | None:intergenic |
| ATCACTTCTTGGAGTTCCTT+TGG | 0.236067 | 4.1:+73832976 | MS.gene059183:CDS |
| GTTGCAACTTCATCACTTCT+TGG | 0.271009 | 4.1:+73832965 | MS.gene059183:CDS |
| CTATGTTCGGCGACTCTTGC+AGG | 0.289024 | 4.1:+73834193 | MS.gene059183:CDS |
| CATTTGCGCCTCCTCGCATT+AGG | 0.296615 | 4.1:+73833029 | MS.gene059183:CDS |
| CAATCTCGAATTTCTTGAAT+AGG | 0.305513 | 4.1:-73833735 | None:intergenic |
| TCACTTCTTGGAGTTCCTTT+GGG | 0.323593 | 4.1:+73832977 | MS.gene059183:CDS |
| GGAGAACTTGTGCGTGCTTT+GGG | 0.340324 | 4.1:+73832935 | MS.gene059183:CDS |
| GGGAGAACTTGTGCGTGCTT+TGG | 0.359263 | 4.1:+73832934 | MS.gene059183:intron |
| TCCGTTAAGACCCTTAGTTT+TGG | 0.364007 | 4.1:+73834007 | MS.gene059183:CDS |
| AATCTCGAATTTCTTGAATA+GGG | 0.366222 | 4.1:-73833734 | None:intergenic |
| CTCTAGGAAGTGGCGGTCTC+TGG | 0.375979 | 4.1:-73834839 | None:intergenic |
| CCCAAAACTAAGGGTCTTAA+CGG | 0.380269 | 4.1:-73834008 | None:intergenic |
| ATTCATGACTATACCTTCTT+CGG | 0.391154 | 4.1:-73833086 | None:intergenic |
| GATAACTATGATGAATTTGA+AGG | 0.396018 | 4.1:+73834122 | MS.gene059183:CDS |
| GAGCCGTCTCTGAGAAGCTT+GGG | 0.402013 | 4.1:+73834063 | MS.gene059183:CDS |
| CTTCAAGGTGATGTTGTTGC+TGG | 0.413690 | 4.1:+73835160 | MS.gene059183:CDS |
| GATTTACTTGTGCAGAAACT+AGG | 0.423851 | 4.1:+73835010 | MS.gene059183:intron |
| ATTTGCGCCTCCTCGCATTA+GGG | 0.439031 | 4.1:+73833030 | MS.gene059183:CDS |
| CTCGCATTAGGGAAGCCATT+TGG | 0.440207 | 4.1:+73833041 | MS.gene059183:CDS |
| ATGCGAGGAGGCGCAAATGC+AGG | 0.453201 | 4.1:-73833025 | None:intergenic |
| CTCAGAGACGGCTCTAATAA+CGG | 0.453596 | 4.1:-73834054 | None:intergenic |
| CATCGACAGTATCGCGTTGT+GGG | 0.457317 | 4.1:-73835201 | None:intergenic |
| AACATCCTACACAATCTTCA+AGG | 0.471336 | 4.1:+73835145 | MS.gene059183:CDS |
| TGCTAAGTTGGTGAGAGAAT+TGG | 0.476269 | 4.1:+73835243 | MS.gene059183:CDS |
| GTGATCACCACCCAAAACTA+AGG | 0.477869 | 4.1:-73834018 | None:intergenic |
| TCAGAGACGGCTCTAATAAC+GGG | 0.479420 | 4.1:-73834053 | None:intergenic |
| GCGCAAATGCAGGCCCTTGA+AGG | 0.482281 | 4.1:-73833015 | None:intergenic |
| AGAGACATACCAGGTTCTCT+AGG | 0.483921 | 4.1:-73834855 | None:intergenic |
| GTTTGTACTACCACACCAAA+TGG | 0.486647 | 4.1:-73833056 | None:intergenic |
| TTACATGCAGAGACTGAATT+CGG | 0.487466 | 4.1:+73832672 | MS.gene059183:CDS |
| TGGTTCTATGTGAGACACTC+CGG | 0.492904 | 4.1:-73835095 | None:intergenic |
| TTCTTCCTTTGCTCGAGTCA+TGG | 0.493089 | 4.1:+73834163 | MS.gene059183:CDS |
| AATTCAGTCTCTGCATGTAA+TGG | 0.495789 | 4.1:-73832669 | None:intergenic |
| ATTTACTTGTGCAGAAACTA+GGG | 0.501074 | 4.1:+73835011 | MS.gene059183:intron |
| TCATGGAGGGTAACTATGTT+CGG | 0.503666 | 4.1:+73834180 | MS.gene059183:CDS |
| CATAATTCATCATTCCTTCA+AGG | 0.510490 | 4.1:+73833001 | MS.gene059183:CDS |
| TCATCTGCTTTGCTAGAGAA+TGG | 0.515301 | 4.1:+73832703 | MS.gene059183:CDS |
| CAAATTCATCATAGTTATCA+GGG | 0.516922 | 4.1:-73834118 | None:intergenic |
| CCATCGACAGTATCGCGTTG+TGG | 0.523089 | 4.1:-73835202 | None:intergenic |
| TCCTTTGCTCGAGTCATGGA+GGG | 0.526222 | 4.1:+73834167 | MS.gene059183:CDS |
| CCGCCACTTCCTAGAGAACC+TGG | 0.528589 | 4.1:+73834846 | MS.gene059183:CDS |
| GACACTCCGGGAGCAAAAGC+AGG | 0.531124 | 4.1:-73835082 | None:intergenic |
| GGTTCTATGTGAGACACTCC+GGG | 0.532823 | 4.1:-73835094 | None:intergenic |
| ATTCAAGAAATTCGAGATTG+TGG | 0.534207 | 4.1:+73833738 | MS.gene059183:CDS |
| TGCTATGGTAGCTGCTAAGT+TGG | 0.538105 | 4.1:+73835231 | MS.gene059183:CDS |
| ATAATTCATCATTCCTTCAA+GGG | 0.538757 | 4.1:+73833002 | MS.gene059183:CDS |
| ACAAACTCGACAACCGAAGA+AGG | 0.545861 | 4.1:+73833073 | MS.gene059183:CDS |
| CATAGATTGATGAATGTCAT+TGG | 0.546830 | 4.1:+73833771 | MS.gene059183:CDS |
| TGATGTTGTTGCTGGAGATG+TGG | 0.553198 | 4.1:+73835168 | MS.gene059183:CDS |
| AGAGCCGTCTCTGAGAAGCT+TGG | 0.556351 | 4.1:+73834062 | MS.gene059183:CDS |
| ATACCAGGTTCTCTAGGAAG+TGG | 0.566389 | 4.1:-73834849 | None:intergenic |
| TCGCGGAAAGAAAGACCTCC+TGG | 0.571109 | 4.1:-73835115 | None:intergenic |
| AAACTAGGGGAAGGTGTGAA+AGG | 0.572287 | 4.1:+73835025 | MS.gene059183:CDS |
| ATTCGTTCAATAACAACTGA+AGG | 0.575794 | 4.1:+73834763 | MS.gene059183:CDS |
| TGTATATATCTCAATAGATG+TGG | 0.586320 | 4.1:+73835048 | MS.gene059183:CDS |
| ACCCTCCATGACTCGAGCAA+AGG | 0.586892 | 4.1:-73834168 | None:intergenic |
| TGTCAAGTTAGTGATGGAAG+AGG | 0.598921 | 4.1:+73833800 | MS.gene059183:CDS |
| TTCCTTTGCTCGAGTCATGG+AGG | 0.602924 | 4.1:+73834166 | MS.gene059183:CDS |
| AATGATGAATTATGACCCAA+AGG | 0.605823 | 4.1:-73832992 | None:intergenic |
| AGCCGTCTCTGAGAAGCTTG+GGG | 0.614679 | 4.1:+73834064 | MS.gene059183:CDS |
| GAACTTGTGCGTGCTTTGGG+AGG | 0.623278 | 4.1:+73832938 | MS.gene059183:CDS |
| GCACGAGTGCTAACTGATGT+TGG | 0.626280 | 4.1:+73833705 | MS.gene059183:CDS |
| TGATCACCACCCAAAACTAA+GGG | 0.632083 | 4.1:-73834017 | None:intergenic |
| TGAATCTGTCAAGTTAGTGA+TGG | 0.632395 | 4.1:+73833794 | MS.gene059183:CDS |
| CCAGGTTCTCTAGGAAGTGG+CGG | 0.634049 | 4.1:-73834846 | None:intergenic |
| CATCACCTTGAAGATTGTGT+AGG | 0.638689 | 4.1:-73835150 | None:intergenic |
| ATTAGGGAAGCCATTTGGTG+TGG | 0.639742 | 4.1:+73833046 | MS.gene059183:CDS |
| TGTCGATGGAATGACTGCTA+TGG | 0.640459 | 4.1:+73835216 | MS.gene059183:CDS |
| GGAGTGTCTCACATAGAACC+AGG | 0.643921 | 4.1:+73835097 | MS.gene059183:CDS |
| CCACAACGCGATACTGTCGA+TGG | 0.646892 | 4.1:+73835202 | MS.gene059183:CDS |
| CTTGTGCAGAAACTAGGGGA+AGG | 0.662379 | 4.1:+73835016 | MS.gene059183:intron |
| GCCGTCTCTGAGAAGCTTGG+GGG | 0.674478 | 4.1:+73834065 | MS.gene059183:CDS |
| CAAATGGCTTCCCTAATGCG+AGG | 0.684146 | 4.1:-73833040 | None:intergenic |
| TTTACTTGTGCAGAAACTAG+GGG | 0.686309 | 4.1:+73835012 | MS.gene059183:intron |
| ATGTCGACGATAGCACGTAG+AGG | 0.716506 | 4.1:+73832643 | MS.gene059183:CDS |
| ATGGCTTCCCTAATGCGAGG+AGG | 0.726925 | 4.1:-73833037 | None:intergenic |
| GTGTCTCACATAGAACCAGG+AGG | 0.775201 | 4.1:+73835100 | MS.gene059183:CDS |
| GTAGGATGTTAAGAACATCG+CGG | 0.825273 | 4.1:-73835132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTAATTTATTTC+AGG | + | chr4.1:73834735-73834754 | MS.gene059183:intron | 10.0% |
| !!! | AAAAATGATTTTTTTTGTGT+AGG | + | chr4.1:73833132-73833151 | MS.gene059183:intron | 15.0% |
| !! | AAGCAAAATATTGTACAAAA+TGG | + | chr4.1:73834924-73834943 | MS.gene059183:intron | 20.0% |
| !! | ATACTTTGTCATTAAGTTAT+GGG | + | chr4.1:73834498-73834517 | MS.gene059183:intron | 20.0% |
| !! | ATTAACAAATTAAAGCATGA+AGG | - | chr4.1:73834728-73834747 | None:intergenic | 20.0% |
| !! | CAAATGAAATATAAAACTAC+GGG | - | chr4.1:73832853-73832872 | None:intergenic | 20.0% |
| !! | CCAAATGAAATATAAAACTA+CGG | - | chr4.1:73832854-73832873 | None:intergenic | 20.0% |
| !! | CTGAAAAATCAAATAATTAC+AGG | - | chr4.1:73833668-73833687 | None:intergenic | 20.0% |
| !! | TATAAAATTAAGTGCATGTT+TGG | - | chr4.1:73834406-73834425 | None:intergenic | 20.0% |
| !! | TATACTTTGTCATTAAGTTA+TGG | + | chr4.1:73834497-73834516 | MS.gene059183:intron | 20.0% |
| !!! | ATATTTCATTTGGATGATTT+TGG | + | chr4.1:73832861-73832880 | MS.gene059183:intron | 20.0% |
| !!! | ATTATTTGATTTTTCAGGTA+AGG | + | chr4.1:73833671-73833690 | MS.gene059183:intron | 20.0% |
| !!! | CTGTAATTATTTGATTTTTC+AGG | + | chr4.1:73833666-73833685 | MS.gene059183:intron | 20.0% |
| !!! | TATTATGTTGTTTTGAGATT+CGG | + | chr4.1:73834957-73834976 | MS.gene059183:intron | 20.0% |
| !!! | TTTGTTAATTTATTTCAGGT+TGG | + | chr4.1:73834739-73834758 | MS.gene059183:intron | 20.0% |
| ! | AACCAAATATTGTCAAATAG+CGG | - | chr4.1:73833451-73833470 | None:intergenic | 25.0% |
| ! | AATACATATGTCGATATCAT+TGG | + | chr4.1:73833238-73833257 | MS.gene059183:intron | 25.0% |
| ! | AATCTCGAATTTCTTGAATA+GGG | - | chr4.1:73833737-73833756 | None:intergenic | 25.0% |
| ! | AGACATACATTAAACTGTTT+AGG | - | chr4.1:73834262-73834281 | None:intergenic | 25.0% |
| ! | ATAATTCATCATTCCTTCAA+GGG | + | chr4.1:73833002-73833021 | MS.gene059183:CDS | 25.0% |
| ! | CAAATTCATCATAGTTATCA+GGG | - | chr4.1:73834121-73834140 | None:intergenic | 25.0% |
| ! | GATAACTATGATGAATTTGA+AGG | + | chr4.1:73834122-73834141 | MS.gene059183:CDS | 25.0% |
| ! | TAAACAGTTTAATGTATGTC+TGG | + | chr4.1:73834261-73834280 | MS.gene059183:intron | 25.0% |
| ! | TCAAATTCATCATAGTTATC+AGG | - | chr4.1:73834122-73834141 | None:intergenic | 25.0% |
| ! | TGTATATATCTCAATAGATG+TGG | + | chr4.1:73835048-73835067 | MS.gene059183:CDS | 25.0% |
| ! | TTATTCCTTGTATGAAATCT+AGG | + | chr4.1:73833198-73833217 | MS.gene059183:intron | 25.0% |
| !! | AATATAAAACTACGGGTTAA+AGG | - | chr4.1:73832846-73832865 | None:intergenic | 25.0% |
| !! | ATGAAGGTGTATATGTTTAT+AGG | - | chr4.1:73833881-73833900 | None:intergenic | 25.0% |
| !! | TGAAGGTGTATATGTTTATA+GGG | - | chr4.1:73833880-73833899 | None:intergenic | 25.0% |
| !! | TGAATTTTCCAAAATCATGA+CGG | + | chr4.1:73834292-73834311 | MS.gene059183:intron | 25.0% |
| !!! | CCGTAGTTTTATATTTCATT+TGG | + | chr4.1:73832851-73832870 | MS.gene059183:intron | 25.0% |
| AATGAAACACAGATTCAAAC+AGG | - | chr4.1:73832813-73832832 | None:intergenic | 30.0% | |
| AATGATGAATTATGACCCAA+AGG | - | chr4.1:73832995-73833014 | None:intergenic | 30.0% | |
| ATGACATATCTTACAAACCA+TGG | - | chr4.1:73834701-73834720 | None:intergenic | 30.0% | |
| ATTCAAGAAATTCGAGATTG+TGG | + | chr4.1:73833738-73833757 | MS.gene059183:CDS | 30.0% | |
| ATTCATGACTATACCTTCTT+CGG | - | chr4.1:73833089-73833108 | None:intergenic | 30.0% | |
| ATTCGTTCAATAACAACTGA+AGG | + | chr4.1:73834763-73834782 | MS.gene059183:CDS | 30.0% | |
| ATTTACTTGTGCAGAAACTA+GGG | + | chr4.1:73835011-73835030 | MS.gene059183:intron | 30.0% | |
| CAATATATTCAGCATGATGA+AGG | - | chr4.1:73833897-73833916 | None:intergenic | 30.0% | |
| CAATCTCGAATTTCTTGAAT+AGG | - | chr4.1:73833738-73833757 | None:intergenic | 30.0% | |
| CATAATTCATCATTCCTTCA+AGG | + | chr4.1:73833001-73833020 | MS.gene059183:CDS | 30.0% | |
| CATAGATTGATGAATGTCAT+TGG | + | chr4.1:73833771-73833790 | MS.gene059183:CDS | 30.0% | |
| GTATAGTCATGAATTTCCTT+AGG | + | chr4.1:73833095-73833114 | MS.gene059183:intron | 30.0% | |
| TACTACCTAGATTTCATACA+AGG | - | chr4.1:73833206-73833225 | None:intergenic | 30.0% | |
| TATGAAATCTAGGTAGTAGA+AGG | + | chr4.1:73833208-73833227 | MS.gene059183:intron | 30.0% | |
| TATTAAAAAGCAACGCTACA+TGG | - | chr4.1:73833521-73833540 | None:intergenic | 30.0% | |
| TGACATATCTTACAAACCAT+GGG | - | chr4.1:73834700-73834719 | None:intergenic | 30.0% | |
| TGAGTTTGACAAAATAACGA+CGG | + | chr4.1:73834370-73834389 | MS.gene059183:intron | 30.0% | |
| TGTTATTACAGAGAACAACT+AGG | - | chr4.1:73834449-73834468 | None:intergenic | 30.0% | |
| TTAAGACTTCTACAATCCTA+AGG | - | chr4.1:73833114-73833133 | None:intergenic | 30.0% | |
| ! | AAGCATCAATTACACGATTT+TGG | - | chr4.1:73832729-73832748 | None:intergenic | 30.0% |
| ! | TTGTATTTCTGAGGATAACA+TGG | + | chr4.1:73833315-73833334 | MS.gene059183:intron | 30.0% |
| !!! | TTTTTCAGGTAAGGATTTAC+AGG | + | chr4.1:73833680-73833699 | MS.gene059183:intron | 30.0% |
| AACATCCTACACAATCTTCA+AGG | + | chr4.1:73835145-73835164 | MS.gene059183:CDS | 35.0% | |
| AATTCAGTCTCTGCATGTAA+TGG | - | chr4.1:73832672-73832691 | None:intergenic | 35.0% | |
| ACACGAGCAACTTATTTAAC+AGG | + | chr4.1:73833583-73833602 | MS.gene059183:intron | 35.0% | |
| CTTTGCTCTTTCTCTAATCA+GGG | - | chr4.1:73832758-73832777 | None:intergenic | 35.0% | |
| GACAACACTGAATAGAATAC+AGG | - | chr4.1:73833364-73833383 | None:intergenic | 35.0% | |
| GAGGACATAAAACATGTCTA+TGG | - | chr4.1:73833289-73833308 | None:intergenic | 35.0% | |
| GATTTACTTGTGCAGAAACT+AGG | + | chr4.1:73835010-73835029 | MS.gene059183:intron | 35.0% | |
| GCTTAAGGCAAGTCATTATT+TGG | + | chr4.1:73832777-73832796 | MS.gene059183:intron | 35.0% | |
| TAGAGAAAGAGCAAAGCTTA+AGG | + | chr4.1:73832762-73832781 | MS.gene059183:intron | 35.0% | |
| TATCTGCACTAAACGAAAAG+CGG | - | chr4.1:73834564-73834583 | None:intergenic | 35.0% | |
| TGAATAGAATACAGGTGAAC+AGG | - | chr4.1:73833356-73833375 | None:intergenic | 35.0% | |
| TGAATCTGTCAAGTTAGTGA+TGG | + | chr4.1:73833794-73833813 | MS.gene059183:CDS | 35.0% | |
| TGCCGCTATTTGACAATATT+TGG | + | chr4.1:73833446-73833465 | MS.gene059183:intron | 35.0% | |
| TTACATGCAGAGACTGAATT+CGG | + | chr4.1:73832672-73832691 | MS.gene059183:CDS | 35.0% | |
| TTGTCATTAAGTTATGGGAG+TGG | + | chr4.1:73834503-73834522 | MS.gene059183:intron | 35.0% | |
| TTTACTTGTGCAGAAACTAG+GGG | + | chr4.1:73835012-73835031 | MS.gene059183:intron | 35.0% | |
| ! | ACATGTTTTATGTCCTCTTG+TGG | + | chr4.1:73833292-73833311 | MS.gene059183:intron | 35.0% |
| ! | CTTTTCGTTTAGTGCAGATA+AGG | + | chr4.1:73834564-73834583 | MS.gene059183:intron | 35.0% |
| ! | TATCAATACAAGAAGCGTGA+CGG | - | chr4.1:73833639-73833658 | None:intergenic | 35.0% |
| ! | TGTAGCTTTTGCCAAAATTG+TGG | + | chr4.1:73834342-73834361 | MS.gene059183:intron | 35.0% |
| !! | ATTGGTGTTTTTCTGAACCT+TGG | + | chr4.1:73834986-73835005 | MS.gene059183:intron | 35.0% |
| ATCACTTCTTGGAGTTCCTT+TGG | + | chr4.1:73832976-73832995 | MS.gene059183:CDS | 40.0% | |
| ATCATTGGACTTGCGTTGTT+AGG | + | chr4.1:73833253-73833272 | MS.gene059183:intron | 40.0% | |
| CATCACCTTGAAGATTGTGT+AGG | - | chr4.1:73835153-73835172 | None:intergenic | 40.0% | |
| CCCAAAACTAAGGGTCTTAA+CGG | - | chr4.1:73834011-73834030 | None:intergenic | 40.0% | |
| CTCAGAAATACAACCACAAG+AGG | - | chr4.1:73833308-73833327 | None:intergenic | 40.0% | |
| CTCATCAGAAGCTCACAAAT+TGG | - | chr4.1:73833836-73833855 | None:intergenic | 40.0% | |
| GCTTTGCTCTTTCTCTAATC+AGG | - | chr4.1:73832759-73832778 | None:intergenic | 40.0% | |
| GTAGAAATTGCTTCTCTGCA+GGG | + | chr4.1:73832914-73832933 | MS.gene059183:intron | 40.0% | |
| GTAGGATGTTAAGAACATCG+CGG | - | chr4.1:73835135-73835154 | None:intergenic | 40.0% | |
| GTGCGCAAGCAAAAAAGTTT+GGG | + | chr4.1:73834788-73834807 | MS.gene059183:CDS | 40.0% | |
| GTTGCAACTTCATCACTTCT+TGG | + | chr4.1:73832965-73832984 | MS.gene059183:CDS | 40.0% | |
| GTTTGTACTACCACACCAAA+TGG | - | chr4.1:73833059-73833078 | None:intergenic | 40.0% | |
| TAAATGTCAGTCTTCACCCA+TGG | + | chr4.1:73834681-73834700 | MS.gene059183:intron | 40.0% | |
| TCACTTCTTGGAGTTCCTTT+GGG | + | chr4.1:73832977-73832996 | MS.gene059183:CDS | 40.0% | |
| TCATCTGCTTTGCTAGAGAA+TGG | + | chr4.1:73832703-73832722 | MS.gene059183:CDS | 40.0% | |
| TCATGGAGGGTAACTATGTT+CGG | + | chr4.1:73834180-73834199 | MS.gene059183:CDS | 40.0% | |
| TCTGCACAAGTAAATCACCA+AGG | - | chr4.1:73835006-73835025 | None:intergenic | 40.0% | |
| TGATCACCACCCAAAACTAA+GGG | - | chr4.1:73834020-73834039 | None:intergenic | 40.0% | |
| TGCGCAAGCAAAAAAGTTTG+GGG | + | chr4.1:73834789-73834808 | MS.gene059183:CDS | 40.0% | |
| TGCTTGATCCACATTCTTTC+AGG | + | chr4.1:73833983-73834002 | MS.gene059183:intron | 40.0% | |
| TGTAGAAATTGCTTCTCTGC+AGG | + | chr4.1:73832913-73832932 | MS.gene059183:intron | 40.0% | |
| TTGTCAAATAGCGGCAACAA+CGG | - | chr4.1:73833442-73833461 | None:intergenic | 40.0% | |
| ! | AACTCAAGCCACCACAATTT+TGG | - | chr4.1:73834356-73834375 | None:intergenic | 40.0% |
| ! | AGCTTTTGCCAAAATTGTGG+TGG | + | chr4.1:73834345-73834364 | MS.gene059183:intron | 40.0% |
| ! | CTCTTGTGGTTGTATTTCTG+AGG | + | chr4.1:73833306-73833325 | MS.gene059183:intron | 40.0% |
| ! | TAACGGATCCTGAAAGAATG+TGG | - | chr4.1:73833994-73834013 | None:intergenic | 40.0% |
| ! | TCCGTTAAGACCCTTAGTTT+TGG | + | chr4.1:73834007-73834026 | MS.gene059183:CDS | 40.0% |
| ! | TGTCAAGTTAGTGATGGAAG+AGG | + | chr4.1:73833800-73833819 | MS.gene059183:CDS | 40.0% |
| !! | CCGTTAAGACCCTTAGTTTT+GGG | + | chr4.1:73834008-73834027 | MS.gene059183:CDS | 40.0% |
| !! | TGCTAAGTTGGTGAGAGAAT+TGG | + | chr4.1:73835243-73835262 | MS.gene059183:CDS | 40.0% |
| !! | TTTGAGATTCGGTGCTTCAT+TGG | + | chr4.1:73834968-73834987 | MS.gene059183:intron | 40.0% |
| !!! | TTAAGACCCTTAGTTTTGGG+TGG | + | chr4.1:73834011-73834030 | MS.gene059183:CDS | 40.0% |
| ACAAACTCGACAACCGAAGA+AGG | + | chr4.1:73833073-73833092 | MS.gene059183:CDS | 45.0% | |
| AGAGACATACCAGGTTCTCT+AGG | - | chr4.1:73834858-73834877 | None:intergenic | 45.0% | |
| CGTGCGCAAGCAAAAAAGTT+TGG | + | chr4.1:73834787-73834806 | MS.gene059183:CDS | 45.0% | |
| CTGCAGATCGTAGGAAATAG+CGG | + | chr4.1:73833386-73833405 | MS.gene059183:intron | 45.0% | |
| CTTCAAGGTGATGTTGTTGC+TGG | + | chr4.1:73835160-73835179 | MS.gene059183:CDS | 45.0% | |
| GTGATCACCACCCAAAACTA+AGG | - | chr4.1:73834021-73834040 | None:intergenic | 45.0% | |
| TGATGTTGTTGCTGGAGATG+TGG | + | chr4.1:73835168-73835187 | MS.gene059183:CDS | 45.0% | |
| TGCTATGGTAGCTGCTAAGT+TGG | + | chr4.1:73835231-73835250 | MS.gene059183:CDS | 45.0% | |
| TGTCGATGGAATGACTGCTA+TGG | + | chr4.1:73835216-73835235 | MS.gene059183:CDS | 45.0% | |
| TGTTGTCAACTGCAGATCGT+AGG | + | chr4.1:73833377-73833396 | MS.gene059183:intron | 45.0% | |
| TTCTTCCTTTGCTCGAGTCA+TGG | + | chr4.1:73834163-73834182 | MS.gene059183:CDS | 45.0% | |
| ! | AAACTAGGGGAAGGTGTGAA+AGG | + | chr4.1:73835025-73835044 | MS.gene059183:CDS | 45.0% |
| ! | ATACCAGGTTCTCTAGGAAG+TGG | - | chr4.1:73834852-73834871 | None:intergenic | 45.0% |
| ! | ATTAGGGAAGCCATTTGGTG+TGG | + | chr4.1:73833046-73833065 | MS.gene059183:CDS | 45.0% |
| ! | CTCAGAGACGGCTCTAATAA+CGG | - | chr4.1:73834057-73834076 | None:intergenic | 45.0% |
| ! | TCACAGTGCCGTCATGATTT+TGG | - | chr4.1:73834303-73834322 | None:intergenic | 45.0% |
| ! | TCAGAGACGGCTCTAATAAC+GGG | - | chr4.1:73834056-73834075 | None:intergenic | 45.0% |
| ! | TGGTTCTATGTGAGACACTC+CGG | - | chr4.1:73835098-73835117 | None:intergenic | 45.0% |
| ATGTCGACGATAGCACGTAG+AGG | + | chr4.1:73832643-73832662 | MS.gene059183:CDS | 50.0% | |
| ATTTGCGCCTCCTCGCATTA+GGG | + | chr4.1:73833030-73833049 | MS.gene059183:CDS | 50.0% | |
| CAAATGGCTTCCCTAATGCG+AGG | - | chr4.1:73833043-73833062 | None:intergenic | 50.0% | |
| CATCGACAGTATCGCGTTGT+GGG | - | chr4.1:73835204-73835223 | None:intergenic | 50.0% | |
| CGTGTGCGTGTGTATATGCT+CGG | + | chr4.1:73834895-73834914 | MS.gene059183:intron | 50.0% | |
| CTCGCATTAGGGAAGCCATT+TGG | + | chr4.1:73833041-73833060 | MS.gene059183:CDS | 50.0% | |
| CTTGTGCAGAAACTAGGGGA+AGG | + | chr4.1:73835016-73835035 | MS.gene059183:intron | 50.0% | |
| GCACGAGTGCTAACTGATGT+TGG | + | chr4.1:73833705-73833724 | MS.gene059183:CDS | 50.0% | |
| GGAGAACTTGTGCGTGCTTT+GGG | + | chr4.1:73832935-73832954 | MS.gene059183:CDS | 50.0% | |
| GGTTCTATGTGAGACACTCC+GGG | - | chr4.1:73835097-73835116 | None:intergenic | 50.0% | |
| GTGTCTCACATAGAACCAGG+AGG | + | chr4.1:73835100-73835119 | MS.gene059183:CDS | 50.0% | |
| GTGTGCGTGTGTATATGCTC+GGG | + | chr4.1:73834896-73834915 | MS.gene059183:intron | 50.0% | |
| TCCTTTGCTCGAGTCATGGA+GGG | + | chr4.1:73834167-73834186 | MS.gene059183:CDS | 50.0% | |
| TTCCTTTGCTCGAGTCATGG+AGG | + | chr4.1:73834166-73834185 | MS.gene059183:CDS | 50.0% | |
| ! | GGAGTGTCTCACATAGAACC+AGG | + | chr4.1:73835097-73835116 | MS.gene059183:CDS | 50.0% |
| !! | CTTGATCCTGCTTTTGCTCC+CGG | + | chr4.1:73835076-73835095 | MS.gene059183:CDS | 50.0% |
| AACGGCGCTATGGCACTATG+TGG | - | chr4.1:73833424-73833443 | None:intergenic | 55.0% | |
| ACCCTCCATGACTCGAGCAA+AGG | - | chr4.1:73834171-73834190 | None:intergenic | 55.0% | |
| ATGGCTTCCCTAATGCGAGG+AGG | - | chr4.1:73833040-73833059 | None:intergenic | 55.0% | |
| CATTTGCGCCTCCTCGCATT+AGG | + | chr4.1:73833029-73833048 | MS.gene059183:CDS | 55.0% | |
| CCACAACGCGATACTGTCGA+TGG | + | chr4.1:73835202-73835221 | MS.gene059183:CDS | 55.0% | |
| CCATCGACAGTATCGCGTTG+TGG | - | chr4.1:73835205-73835224 | None:intergenic | 55.0% | |
| CTATGTTCGGCGACTCTTGC+AGG | + | chr4.1:73834193-73834212 | MS.gene059183:CDS | 55.0% | |
| GCGACAGAGAGAGACATACC+AGG | - | chr4.1:73834867-73834886 | None:intergenic | 55.0% | |
| GGGAGAACTTGTGCGTGCTT+TGG | + | chr4.1:73832934-73832953 | MS.gene059183:intron | 55.0% | |
| TCCCCCAAGCTTCTCAGAGA+CGG | - | chr4.1:73834069-73834088 | None:intergenic | 55.0% | |
| TCGCGGAAAGAAAGACCTCC+TGG | - | chr4.1:73835118-73835137 | None:intergenic | 55.0% | |
| ! | AGAGCCGTCTCTGAGAAGCT+TGG | + | chr4.1:73834062-73834081 | MS.gene059183:CDS | 55.0% |
| ! | AGCCGTCTCTGAGAAGCTTG+GGG | + | chr4.1:73834064-73834083 | MS.gene059183:CDS | 55.0% |
| ! | CCAGGTTCTCTAGGAAGTGG+CGG | - | chr4.1:73834849-73834868 | None:intergenic | 55.0% |
| ! | GAACTTGTGCGTGCTTTGGG+AGG | + | chr4.1:73832938-73832957 | MS.gene059183:CDS | 55.0% |
| ! | GAGCCGTCTCTGAGAAGCTT+GGG | + | chr4.1:73834063-73834082 | MS.gene059183:CDS | 55.0% |
| CCGCCACTTCCTAGAGAACC+TGG | + | chr4.1:73834846-73834865 | MS.gene059183:CDS | 60.0% | |
| GACACTCCGGGAGCAAAAGC+AGG | - | chr4.1:73835085-73835104 | None:intergenic | 60.0% | |
| GCGCAAATGCAGGCCCTTGA+AGG | - | chr4.1:73833018-73833037 | None:intergenic | 60.0% | |
| TAGCGGCAACAACGGCGCTA+TGG | - | chr4.1:73833434-73833453 | None:intergenic | 60.0% | |
| ! | ATGCGAGGAGGCGCAAATGC+AGG | - | chr4.1:73833028-73833047 | None:intergenic | 60.0% |
| ! | CTCTAGGAAGTGGCGGTCTC+TGG | - | chr4.1:73834842-73834861 | None:intergenic | 60.0% |
| ! | CTCTGAGAAGCTTGGGGGAC+TGG | + | chr4.1:73834070-73834089 | MS.gene059183:CDS | 60.0% |
| ! | GCCGTCTCTGAGAAGCTTGG+GGG | + | chr4.1:73834065-73834084 | MS.gene059183:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 73832643 | 73835285 | 73832643 | ID=MS.gene059183 |
| chr4.1 | mRNA | 73832643 | 73835285 | 73832643 | ID=MS.gene059183.t1;Parent=MS.gene059183 |
| chr4.1 | exon | 73832643 | 73832735 | 73832643 | ID=MS.gene059183.t1.exon1;Parent=MS.gene059183.t1 |
| chr4.1 | CDS | 73832643 | 73832735 | 73832643 | ID=cds.MS.gene059183.t1;Parent=MS.gene059183.t1 |
| chr4.1 | exon | 73832935 | 73833094 | 73832935 | ID=MS.gene059183.t1.exon2;Parent=MS.gene059183.t1 |
| chr4.1 | CDS | 73832935 | 73833094 | 73832935 | ID=cds.MS.gene059183.t1;Parent=MS.gene059183.t1 |
| chr4.1 | exon | 73833688 | 73833821 | 73833688 | ID=MS.gene059183.t1.exon3;Parent=MS.gene059183.t1 |
| chr4.1 | CDS | 73833688 | 73833821 | 73833688 | ID=cds.MS.gene059183.t1;Parent=MS.gene059183.t1 |
| chr4.1 | exon | 73834005 | 73834214 | 73834005 | ID=MS.gene059183.t1.exon4;Parent=MS.gene059183.t1 |
| chr4.1 | CDS | 73834005 | 73834214 | 73834005 | ID=cds.MS.gene059183.t1;Parent=MS.gene059183.t1 |
| chr4.1 | exon | 73834757 | 73834867 | 73834757 | ID=MS.gene059183.t1.exon5;Parent=MS.gene059183.t1 |
| chr4.1 | CDS | 73834757 | 73834867 | 73834757 | ID=cds.MS.gene059183.t1;Parent=MS.gene059183.t1 |
| chr4.1 | exon | 73835025 | 73835285 | 73835025 | ID=MS.gene059183.t1.exon6;Parent=MS.gene059183.t1 |
| chr4.1 | CDS | 73835025 | 73835285 | 73835025 | ID=cds.MS.gene059183.t1;Parent=MS.gene059183.t1 |
| Gene Sequence |
| Protein sequence |
