Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45808.t1 | XP_024636707.1 | 95 | 338 | 1 | 1 | 1 | 322 | 1 | 338 | 4.10E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45808.t1 | P46637 | 81.4 | 338 | 44 | 2 | 4 | 322 | 5 | 342 | 4.6e-153 | 542.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45808.t1 | I3SM21 | 95.0 | 338 | 1 | 1 | 1 | 322 | 1 | 338 | 3.0e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48960 | MS.gene45808 | PPI |
| MS.gene63514 | MS.gene45808 | PPI |
| MS.gene059183 | MS.gene45808 | PPI |
| MS.gene45808 | MS.gene059183 | PPI |
| MS.gene56256 | MS.gene45808 | PPI |
| MS.gene51627 | MS.gene45808 | PPI |
| MS.gene009458 | MS.gene45808 | PPI |
| MS.gene48211 | MS.gene45808 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45808.t1 | MTR_4g024960 | 76.627 | 338 | 63 | 1 | 1 | 322 | 1 | 338 | 0.0 | 527 |
| MS.gene45808.t1 | MTR_4g024940 | 92.641 | 231 | 1 | 1 | 1 | 215 | 6 | 236 | 7.27e-154 | 431 |
| MS.gene45808.t1 | MTR_0088s0100 | 49.731 | 372 | 126 | 8 | 1 | 322 | 2 | 362 | 8.18e-107 | 316 |
| MS.gene45808.t1 | MTR_4g019730 | 79.070 | 43 | 9 | 0 | 194 | 236 | 51 | 93 | 8.39e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45808.t1 | AT4G08900 | 81.361 | 338 | 44 | 2 | 4 | 322 | 5 | 342 | 0.0 | 557 |
| MS.gene45808.t1 | AT4G08870 | 74.128 | 344 | 67 | 2 | 1 | 322 | 1 | 344 | 0.0 | 524 |
| MS.gene45808.t1 | AT4G08870 | 70.155 | 258 | 55 | 2 | 1 | 236 | 1 | 258 | 3.59e-131 | 374 |
Find 83 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATCAATTACACGATTT+TGG | 0.183005 | 4.4:-76641112 | None:intergenic |
| TCAAATTCATCATAGTTATC+AGG | 0.221630 | 4.4:-76642519 | None:intergenic |
| GTTGCAACTTCATCGCTTCT+TGG | 0.252068 | 4.4:+76641351 | MS.gene45808:CDS |
| ATCGCTTCTTGGAGTTCCTT+TGG | 0.269514 | 4.4:+76641362 | MS.gene45808:CDS |
| CATTTGCTCCTCCTCGCATT+AGG | 0.271961 | 4.4:+76641415 | MS.gene45808:CDS |
| CTATGTTCGGCGACTCTTGC+AGG | 0.289024 | 4.4:+76642593 | MS.gene45808:CDS |
| CAATCTCGAATTTCTTGAAT+AGG | 0.305513 | 4.4:-76642126 | None:intergenic |
| TCGCTTCTTGGAGTTCCTTT+GGG | 0.344082 | 4.4:+76641363 | MS.gene45808:CDS |
| GGAGAACTTGTGCGTGCTTT+GGG | 0.348798 | 4.4:+76641321 | MS.gene45808:CDS |
| ATTCATGATTATACCTTCTT+CGG | 0.359041 | 4.4:-76641472 | None:intergenic |
| TCCGTTAAGACCCTTAGTTT+TGG | 0.364007 | 4.4:+76642407 | MS.gene45808:CDS |
| AATCTCGAATTTCTTGAATA+GGG | 0.366222 | 4.4:-76642125 | None:intergenic |
| GGGAGAACTTGTGCGTGCTT+TGG | 0.373673 | 4.4:+76641320 | MS.gene45808:intron |
| CCCAAAACTAAGGGTCTTAA+CGG | 0.380269 | 4.4:-76642408 | None:intergenic |
| CTCTAGGAAGTGGCGATCTC+TGG | 0.387897 | 4.4:-76643245 | None:intergenic |
| CCACAACGTGATACTGTTGA+TGG | 0.391393 | 4.4:+76643611 | MS.gene45808:CDS |
| ATTTGCTCCTCCTCGCATTA+GGG | 0.391459 | 4.4:+76641416 | MS.gene45808:CDS |
| GATAACTATGATGAATTTGA+AGG | 0.396018 | 4.4:+76642522 | MS.gene45808:CDS |
| CTTCAAGGTGATGTTGTTGC+TGG | 0.413690 | 4.4:+76643569 | MS.gene45808:CDS |
| CTCGCATTAGGGAGGCCATT+TGG | 0.432644 | 4.4:+76641427 | MS.gene45808:CDS |
| TGCTAAGTTGGTGAGGGAAT+TGG | 0.433148 | 4.4:+76643652 | MS.gene45808:CDS |
| CTCTGAGAAGCTTGGAGGAC+CGG | 0.433927 | 4.4:+76642470 | MS.gene45808:CDS |
| CTCAGAGACGGCTCTAATAA+CGG | 0.453596 | 4.4:-76642454 | None:intergenic |
| AACATCCTACACAATCTTCA+AGG | 0.471336 | 4.4:+76643554 | MS.gene45808:CDS |
| TCAGAGACGGCTCTAATAAC+GGG | 0.479420 | 4.4:-76642453 | None:intergenic |
| AGAGATATACCAGGTTCTCT+AGG | 0.480163 | 4.4:-76643261 | None:intergenic |
| GTGATCGCCACCCAAAACTA+AGG | 0.480443 | 4.4:-76642418 | None:intergenic |
| GAGCAAATGCAGGCCCTTGA+AGG | 0.482281 | 4.4:-76641401 | None:intergenic |
| GATTTACTTGTACAGAAACT+AGG | 0.484109 | 4.4:+76643419 | MS.gene45808:intron |
| TTACATGCAGAGACTGAATT+CGG | 0.487466 | 4.4:+76641058 | MS.gene45808:CDS |
| TGGTTCTATGTGAGACACTC+CGG | 0.492904 | 4.4:-76643504 | None:intergenic |
| TTCTTCCTTTGCTCGAGTCA+TGG | 0.493089 | 4.4:+76642563 | MS.gene45808:CDS |
| TCAAGATGAAGAACATCAAC+CGG | 0.493128 | 4.4:-76642489 | None:intergenic |
| AATTCAGTCTCTGCATGTAA+TGG | 0.495789 | 4.4:-76641055 | None:intergenic |
| TCATGGAGGGTAACTATGTT+CGG | 0.503666 | 4.4:+76642580 | MS.gene45808:CDS |
| CATAATTCATCATTCCTTCA+AGG | 0.510490 | 4.4:+76641387 | MS.gene45808:CDS |
| GTTTGTACTACCACACCAAA+TGG | 0.511485 | 4.4:-76641442 | None:intergenic |
| TCATCTGCTTTGCTAGAGAA+TGG | 0.515301 | 4.4:+76641089 | MS.gene45808:CDS |
| CAAATTCATCATAGTTATCA+GGG | 0.516922 | 4.4:-76642518 | None:intergenic |
| ATTTACTTGTACAGAAACTA+GGG | 0.526123 | 4.4:+76643420 | MS.gene45808:intron |
| TCCTTTGCTCGAGTCATGGA+GGG | 0.526222 | 4.4:+76642567 | MS.gene45808:CDS |
| GACACTCCGGGAGCAAAAGC+AGG | 0.531124 | 4.4:-76643491 | None:intergenic |
| GGTTCTATGTGAGACACTCC+GGG | 0.532823 | 4.4:-76643503 | None:intergenic |
| GCCGTCTCTGAGAAGCTTGG+AGG | 0.534078 | 4.4:+76642465 | MS.gene45808:CDS |
| ATTCAAGAAATTCGAGATTG+TGG | 0.534207 | 4.4:+76642129 | MS.gene45808:CDS |
| CATCAACAGTATCACGTTGT+GGG | 0.535598 | 4.4:-76643610 | None:intergenic |
| TGCTATGGTAGCTGCTAAGT+TGG | 0.538105 | 4.4:+76643640 | MS.gene45808:CDS |
| ATAATTCATCATTCCTTCAA+GGG | 0.538757 | 4.4:+76641388 | MS.gene45808:CDS |
| ACAAACTCGACAACCGAAGA+AGG | 0.545861 | 4.4:+76641459 | MS.gene45808:CDS |
| CATAGATTGATGAATGTCAT+TGG | 0.546830 | 4.4:+76642162 | MS.gene45808:CDS |
| TGATGTTGTTGCTGGAGATG+TGG | 0.553198 | 4.4:+76643577 | MS.gene45808:CDS |
| ATACCAGGTTCTCTAGGAAG+TGG | 0.562552 | 4.4:-76643255 | None:intergenic |
| ATGCGAGGAGGAGCAAATGC+AGG | 0.563905 | 4.4:-76641411 | None:intergenic |
| TCCTCCAAGCTTCTCAGAGA+CGG | 0.565146 | 4.4:-76642466 | None:intergenic |
| CCATCAACAGTATCACGTTG+TGG | 0.568388 | 4.4:-76643611 | None:intergenic |
| AAACTAGGGGAAGGTGTGAA+AGG | 0.573749 | 4.4:+76643434 | MS.gene45808:CDS |
| TCACGGAATGAAAGACCTCC+TGG | 0.573895 | 4.4:-76643524 | None:intergenic |
| ATTCGTTCAATAACAACTGA+AGG | 0.575794 | 4.4:+76643169 | MS.gene45808:CDS |
| TCGCCACTTCCTAGAGAACC+TGG | 0.577353 | 4.4:+76643252 | MS.gene45808:CDS |
| TGCTCCTCCTCGCATTAGGG+AGG | 0.581507 | 4.4:+76641419 | MS.gene45808:CDS |
| TGTATATATCTCAATAGATG+TGG | 0.586320 | 4.4:+76643457 | MS.gene45808:CDS |
| ACCCTCCATGACTCGAGCAA+AGG | 0.586892 | 4.4:-76642568 | None:intergenic |
| ATTAGGGAGGCCATTTGGTG+TGG | 0.587656 | 4.4:+76641432 | MS.gene45808:CDS |
| TGGTAGCTGCTAAGTTGGTG+AGG | 0.594144 | 4.4:+76643645 | MS.gene45808:CDS |
| TGTCAAGTTAGTGATGGAAG+AGG | 0.598921 | 4.4:+76642191 | MS.gene45808:CDS |
| AGAGCCGTCTCTGAGAAGCT+TGG | 0.599759 | 4.4:+76642462 | MS.gene45808:CDS |
| TTCCTTTGCTCGAGTCATGG+AGG | 0.602924 | 4.4:+76642566 | MS.gene45808:CDS |
| AATGATGAATTATGACCCAA+AGG | 0.605823 | 4.4:-76641378 | None:intergenic |
| GAACTTGTGCGTGCTTTGGG+CGG | 0.620192 | 4.4:+76641324 | MS.gene45808:CDS |
| GGTAGCTGCTAAGTTGGTGA+GGG | 0.622646 | 4.4:+76643646 | MS.gene45808:CDS |
| TGATCGCCACCCAAAACTAA+GGG | 0.624089 | 4.4:-76642417 | None:intergenic |
| TGAATCTGTCAAGTTAGTGA+TGG | 0.632395 | 4.4:+76642185 | MS.gene45808:CDS |
| TGTTGATGGAATGACTGCTA+TGG | 0.632975 | 4.4:+76643625 | MS.gene45808:CDS |
| CATCACCTTGAAGATTGTGT+AGG | 0.638689 | 4.4:-76643559 | None:intergenic |
| GCACGAGTGCTAACTGATGT+TGG | 0.641769 | 4.4:+76642096 | MS.gene45808:CDS |
| GGAGTGTCTCACATAGAACC+AGG | 0.643921 | 4.4:+76643506 | MS.gene45808:CDS |
| CTTGTACAGAAACTAGGGGA+AGG | 0.659308 | 4.4:+76643425 | MS.gene45808:intron |
| CAAATGGCCTCCCTAATGCG+AGG | 0.684146 | 4.4:-76641426 | None:intergenic |
| ATGGCCTCCCTAATGCGAGG+AGG | 0.723188 | 4.4:-76641423 | None:intergenic |
| TTTACTTGTACAGAAACTAG+GGG | 0.728481 | 4.4:+76643421 | MS.gene45808:intron |
| GTAGGATGTTAAGAACATCA+CGG | 0.733562 | 4.4:-76643541 | None:intergenic |
| ATGTCGACGATAGCACGCAG+AGG | 0.744018 | 4.4:+76641029 | MS.gene45808:CDS |
| GTGTCTCACATAGAACCAGG+AGG | 0.775201 | 4.4:+76643509 | MS.gene45808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTAATTTATTTC+AGG | + | chr4.4:76643141-76643160 | MS.gene45808:intron | 10.0% |
| !! | AACACTAAATTTATCAATTA+CGG | - | chr4.4:76642933-76642952 | None:intergenic | 15.0% |
| !! | ATATTATGTAATTAAGTCAT+GGG | + | chr4.4:76642898-76642917 | MS.gene45808:intron | 15.0% |
| !! | CAAAGGAAATATAAAATTAT+GGG | - | chr4.4:76641239-76641258 | None:intergenic | 15.0% |
| !! | TATATTATGTAATTAAGTCA+TGG | + | chr4.4:76642897-76642916 | MS.gene45808:intron | 15.0% |
| !! | TGAAAAATCAAAATAATTAC+AGG | - | chr4.4:76642058-76642077 | None:intergenic | 15.0% |
| !!! | TGTAATTATTTTGATTTTTC+AGG | + | chr4.4:76642057-76642076 | MS.gene45808:intron | 15.0% |
| !!! | TTAAAAATGATTTTTTGTGT+AGG | + | chr4.4:76641516-76641535 | MS.gene45808:intron | 15.0% |
| !! | AAGCAAAATATTGTACAAAA+TGG | + | chr4.4:76643333-76643352 | MS.gene45808:intron | 20.0% |
| !! | AATACAAATGTCGATATTAT+TGG | + | chr4.4:76641622-76641641 | MS.gene45808:intron | 20.0% |
| !! | AATATAAAATTATGGGTCAA+AGG | - | chr4.4:76641232-76641251 | None:intergenic | 20.0% |
| !! | ATTAACAAATTAAAACGTGA+AGG | - | chr4.4:76643134-76643153 | None:intergenic | 20.0% |
| !! | CCAAAGGAAATATAAAATTA+TGG | - | chr4.4:76641240-76641259 | None:intergenic | 20.0% |
| !! | TATAAAATTAAGTGCATGTT+TGG | - | chr4.4:76642806-76642825 | None:intergenic | 20.0% |
| !! | TTATTCTTTGTATGAAATCT+AGG | + | chr4.4:76641582-76641601 | MS.gene45808:intron | 20.0% |
| !!! | CCATAATTTTATATTTCCTT+TGG | + | chr4.4:76641237-76641256 | MS.gene45808:intron | 20.0% |
| !!! | TTATTTTGATTTTTCAGGTA+AGG | + | chr4.4:76642062-76642081 | MS.gene45808:intron | 20.0% |
| !!! | TTTGTTAATTTATTTCAGGT+TGG | + | chr4.4:76643145-76643164 | MS.gene45808:intron | 20.0% |
| ! | AACCAAATATTGTCAAATAG+CGG | - | chr4.4:76641841-76641860 | None:intergenic | 25.0% |
| ! | AACTACAGTAAACGAAAAAA+CGG | - | chr4.4:76642964-76642983 | None:intergenic | 25.0% |
| ! | AATCTCGAATTTCTTGAATA+GGG | - | chr4.4:76642128-76642147 | None:intergenic | 25.0% |
| ! | AGACATACATTAAACTGTTT+AGG | - | chr4.4:76642662-76642681 | None:intergenic | 25.0% |
| ! | ATAACATATCTTACAAACCA+TGG | - | chr4.4:76643107-76643126 | None:intergenic | 25.0% |
| ! | ATAATTCATCATTCCTTCAA+GGG | + | chr4.4:76641388-76641407 | MS.gene45808:CDS | 25.0% |
| ! | ATTCATGATTATACCTTCTT+CGG | - | chr4.4:76641475-76641494 | None:intergenic | 25.0% |
| ! | ATTTACTTGTACAGAAACTA+GGG | + | chr4.4:76643420-76643439 | MS.gene45808:intron | 25.0% |
| ! | CAAATTCATCATAGTTATCA+GGG | - | chr4.4:76642521-76642540 | None:intergenic | 25.0% |
| ! | GATAACTATGATGAATTTGA+AGG | + | chr4.4:76642522-76642541 | MS.gene45808:CDS | 25.0% |
| ! | GTATAATCATGAATTTCCTT+AGG | + | chr4.4:76641481-76641500 | MS.gene45808:intron | 25.0% |
| ! | TAAACAGTTTAATGTATGTC+TGG | + | chr4.4:76642661-76642680 | MS.gene45808:intron | 25.0% |
| ! | TAACATATCTTACAAACCAT+GGG | - | chr4.4:76643106-76643125 | None:intergenic | 25.0% |
| ! | TCAAATTCATCATAGTTATC+AGG | - | chr4.4:76642522-76642541 | None:intergenic | 25.0% |
| ! | TGTATATATCTCAATAGATG+TGG | + | chr4.4:76643457-76643476 | MS.gene45808:CDS | 25.0% |
| ! | TTATAACCAAAAACATCCAA+AGG | - | chr4.4:76641256-76641275 | None:intergenic | 25.0% |
| !! | ATATTTCCTTTGGATGTTTT+TGG | + | chr4.4:76641247-76641266 | MS.gene45808:intron | 25.0% |
| !! | ATGAAGGTGTATATGTTTAT+AGG | - | chr4.4:76642270-76642289 | None:intergenic | 25.0% |
| !! | TGAAGGTGTATATGTTTATA+GGG | - | chr4.4:76642269-76642288 | None:intergenic | 25.0% |
| !! | TGAATTTTCCAAAATCATGA+CGG | + | chr4.4:76642692-76642711 | MS.gene45808:intron | 25.0% |
| AAACTGACATTTATAACCAG+AGG | - | chr4.4:76643080-76643099 | None:intergenic | 30.0% | |
| AATGATGAATTATGACCCAA+AGG | - | chr4.4:76641381-76641400 | None:intergenic | 30.0% | |
| ATTCAAGAAATTCGAGATTG+TGG | + | chr4.4:76642129-76642148 | MS.gene45808:CDS | 30.0% | |
| ATTCGTTCAATAACAACTGA+AGG | + | chr4.4:76643169-76643188 | MS.gene45808:CDS | 30.0% | |
| CAATATATTGAGCATGATGA+AGG | - | chr4.4:76642286-76642305 | None:intergenic | 30.0% | |
| CAATCTCGAATTTCTTGAAT+AGG | - | chr4.4:76642129-76642148 | None:intergenic | 30.0% | |
| CATAATTCATCATTCCTTCA+AGG | + | chr4.4:76641387-76641406 | MS.gene45808:CDS | 30.0% | |
| CATAGATTGATGAATGTCAT+TGG | + | chr4.4:76642162-76642181 | MS.gene45808:CDS | 30.0% | |
| GATTTACTTGTACAGAAACT+AGG | + | chr4.4:76643419-76643438 | MS.gene45808:intron | 30.0% | |
| TATGAAATCTAGGTAGTAGA+AGG | + | chr4.4:76641592-76641611 | MS.gene45808:intron | 30.0% | |
| TTAAGACTTCTACAATCCTA+AGG | - | chr4.4:76641500-76641519 | None:intergenic | 30.0% | |
| TTTACTTGTACAGAAACTAG+GGG | + | chr4.4:76643421-76643440 | MS.gene45808:intron | 30.0% | |
| ! | AAGCATCAATTACACGATTT+TGG | - | chr4.4:76641115-76641134 | None:intergenic | 30.0% |
| !! | TGTATTTTCTGAGGATAACA+GGG | + | chr4.4:76641700-76641719 | MS.gene45808:intron | 30.0% |
| !! | TTGTATTTTCTGAGGATAAC+AGG | + | chr4.4:76641699-76641718 | MS.gene45808:intron | 30.0% |
| !!! | ACTTTTCTGAAACATAAACC+TGG | + | chr4.4:76642828-76642847 | MS.gene45808:intron | 30.0% |
| !!! | TAGTACGTTGTTTTGAGATT+TGG | + | chr4.4:76643366-76643385 | MS.gene45808:intron | 30.0% |
| !!! | TTTTTCAGGTAAGGATTTAC+AGG | + | chr4.4:76642071-76642090 | MS.gene45808:intron | 30.0% |
| AAAGCAACACAGATTCAAAC+AGG | - | chr4.4:76641199-76641218 | None:intergenic | 35.0% | |
| AACATCCTACACAATCTTCA+AGG | + | chr4.4:76643554-76643573 | MS.gene45808:CDS | 35.0% | |
| AATTCAGTCTCTGCATGTAA+TGG | - | chr4.4:76641058-76641077 | None:intergenic | 35.0% | |
| ACACGAGCAACTTATTTAAC+AGG | + | chr4.4:76641973-76641992 | MS.gene45808:intron | 35.0% | |
| ATGTAATTAAGTCATGGGAG+TGG | + | chr4.4:76642903-76642922 | MS.gene45808:intron | 35.0% | |
| ATTATTGGACTCACGTTGTT+AGG | + | chr4.4:76641637-76641656 | MS.gene45808:intron | 35.0% | |
| CTATTCAGTGTTGTCAATTG+CGG | + | chr4.4:76641754-76641773 | MS.gene45808:intron | 35.0% | |
| CTCATCAGAAGCTCATAAAT+TGG | - | chr4.4:76642225-76642244 | None:intergenic | 35.0% | |
| CTTTGCTCTTTCTCTAATCA+GGG | - | chr4.4:76641144-76641163 | None:intergenic | 35.0% | |
| GACAACACTGAATAGAATAC+AGG | - | chr4.4:76641749-76641768 | None:intergenic | 35.0% | |
| GAGAACACTGTCAAATGATT+TGG | + | chr4.4:76642242-76642261 | MS.gene45808:intron | 35.0% | |
| GAGGACATAAAACATGTCTA+TGG | - | chr4.4:76641673-76641692 | None:intergenic | 35.0% | |
| GCTTAAGGCAAGTCATTATT+TGG | + | chr4.4:76641163-76641182 | MS.gene45808:intron | 35.0% | |
| GTAGAAATTGCTTCTCTGTA+GGG | + | chr4.4:76641300-76641319 | MS.gene45808:intron | 35.0% | |
| GTAGGATGTTAAGAACATCA+CGG | - | chr4.4:76643544-76643563 | None:intergenic | 35.0% | |
| TAGAGAAAGAGCAAAGCTTA+AGG | + | chr4.4:76641148-76641167 | MS.gene45808:intron | 35.0% | |
| TATTCAGTGTTGTCAATTGC+GGG | + | chr4.4:76641755-76641774 | MS.gene45808:intron | 35.0% | |
| TCAAGATGAAGAACATCAAC+CGG | - | chr4.4:76642492-76642511 | None:intergenic | 35.0% | |
| TCAGAAAATACAACCACAAG+AGG | - | chr4.4:76641692-76641711 | None:intergenic | 35.0% | |
| TCTGTACAAGTAAATCACCA+AGG | - | chr4.4:76643415-76643434 | None:intergenic | 35.0% | |
| TGAATAGAATACAGGTGAAC+AGG | - | chr4.4:76641741-76641760 | None:intergenic | 35.0% | |
| TGAATCTGTCAAGTTAGTGA+TGG | + | chr4.4:76642185-76642204 | MS.gene45808:CDS | 35.0% | |
| TGAGTTTGACAAAATCACGA+CGG | + | chr4.4:76642770-76642789 | MS.gene45808:intron | 35.0% | |
| TGCCGCTATTTGACAATATT+TGG | + | chr4.4:76641836-76641855 | MS.gene45808:intron | 35.0% | |
| TGTAGAAATTGCTTCTCTGT+AGG | + | chr4.4:76641299-76641318 | MS.gene45808:intron | 35.0% | |
| TGTTAAAAAGCAACGCTACA+TGG | - | chr4.4:76641911-76641930 | None:intergenic | 35.0% | |
| TTACATGCAGAGACTGAATT+CGG | + | chr4.4:76641058-76641077 | MS.gene45808:CDS | 35.0% | |
| ! | ACATGTTTTATGTCCTCTTG+TGG | + | chr4.4:76641676-76641695 | MS.gene45808:intron | 35.0% |
| ! | TAAATGTCAGTTTTCACCCA+TGG | + | chr4.4:76643087-76643106 | MS.gene45808:intron | 35.0% |
| ! | TCTTGTGGTTGTATTTTCTG+AGG | + | chr4.4:76641691-76641710 | MS.gene45808:intron | 35.0% |
| ! | TGTAGCTTTTGCCAAAATTG+TGG | + | chr4.4:76642742-76642761 | MS.gene45808:intron | 35.0% |
| !! | ATTGGTGTTTTTCTGAACCT+TGG | + | chr4.4:76643395-76643414 | MS.gene45808:intron | 35.0% |
| !! | TTTGAGATTTGGTGCTTCAT+TGG | + | chr4.4:76643377-76643396 | MS.gene45808:intron | 35.0% |
| AGAGATATACCAGGTTCTCT+AGG | - | chr4.4:76643264-76643283 | None:intergenic | 40.0% | |
| CATCAACAGTATCACGTTGT+GGG | - | chr4.4:76643613-76643632 | None:intergenic | 40.0% | |
| CATCACCTTGAAGATTGTGT+AGG | - | chr4.4:76643562-76643581 | None:intergenic | 40.0% | |
| CATGTTGTCCACATTCTTTC+AGG | + | chr4.4:76642383-76642402 | MS.gene45808:intron | 40.0% | |
| CCCAAAACTAAGGGTCTTAA+CGG | - | chr4.4:76642411-76642430 | None:intergenic | 40.0% | |
| GAAAGAATGTGGACAACATG+AGG | - | chr4.4:76642383-76642402 | None:intergenic | 40.0% | |
| GCTTTGCTCTTTCTCTAATC+AGG | - | chr4.4:76641145-76641164 | None:intergenic | 40.0% | |
| GTTTGTACTACCACACCAAA+TGG | - | chr4.4:76641445-76641464 | None:intergenic | 40.0% | |
| TCATCTGCTTTGCTAGAGAA+TGG | + | chr4.4:76641089-76641108 | MS.gene45808:CDS | 40.0% | |
| TCATGGAGGGTAACTATGTT+CGG | + | chr4.4:76642580-76642599 | MS.gene45808:CDS | 40.0% | |
| TGTGTGTGTCTGTTTATGCT+CGG | + | chr4.4:76643303-76643322 | MS.gene45808:intron | 40.0% | |
| TGTTCTTACAGAGAACAACC+AGG | - | chr4.4:76642849-76642868 | None:intergenic | 40.0% | |
| TTGTCAAATAGCGGCAACTA+CGG | - | chr4.4:76641832-76641851 | None:intergenic | 40.0% | |
| ! | AACTCAAGCCACCACAATTT+TGG | - | chr4.4:76642756-76642775 | None:intergenic | 40.0% |
| ! | AGCTTTTGCCAAAATTGTGG+TGG | + | chr4.4:76642745-76642764 | MS.gene45808:intron | 40.0% |
| ! | TAACGGATCCTGAAAGAATG+TGG | - | chr4.4:76642394-76642413 | None:intergenic | 40.0% |
| ! | TATCACTACAAGAAGCGTGA+CGG | - | chr4.4:76642029-76642048 | None:intergenic | 40.0% |
| ! | TCCGTTAAGACCCTTAGTTT+TGG | + | chr4.4:76642407-76642426 | MS.gene45808:CDS | 40.0% |
| ! | TGTCAAGTTAGTGATGGAAG+AGG | + | chr4.4:76642191-76642210 | MS.gene45808:CDS | 40.0% |
| ! | TGTTGATGGAATGACTGCTA+TGG | + | chr4.4:76643625-76643644 | MS.gene45808:CDS | 40.0% |
| ! | TTGCTGCAAGTTATTTCCTC+TGG | + | chr4.4:76643061-76643080 | MS.gene45808:intron | 40.0% |
| !! | CCGTTAAGACCCTTAGTTTT+GGG | + | chr4.4:76642408-76642427 | MS.gene45808:CDS | 40.0% |
| !!! | TTAAGACCCTTAGTTTTGGG+TGG | + | chr4.4:76642411-76642430 | MS.gene45808:CDS | 40.0% |
| ACAAACTCGACAACCGAAGA+AGG | + | chr4.4:76641459-76641478 | MS.gene45808:CDS | 45.0% | |
| ATCGCTTCTTGGAGTTCCTT+TGG | + | chr4.4:76641362-76641381 | MS.gene45808:CDS | 45.0% | |
| ATTTGCTCCTCCTCGCATTA+GGG | + | chr4.4:76641416-76641435 | MS.gene45808:CDS | 45.0% | |
| CAGACAGAGAGAGATATACC+AGG | - | chr4.4:76643273-76643292 | None:intergenic | 45.0% | |
| CCACAACGTGATACTGTTGA+TGG | + | chr4.4:76643611-76643630 | MS.gene45808:CDS | 45.0% | |
| CCATCAACAGTATCACGTTG+TGG | - | chr4.4:76643614-76643633 | None:intergenic | 45.0% | |
| CGTGCACAAGCGAAAAAGTT+TGG | + | chr4.4:76643193-76643212 | MS.gene45808:CDS | 45.0% | |
| CTTCAAGGTGATGTTGTTGC+TGG | + | chr4.4:76643569-76643588 | MS.gene45808:CDS | 45.0% | |
| CTTGTACAGAAACTAGGGGA+AGG | + | chr4.4:76643425-76643444 | MS.gene45808:intron | 45.0% | |
| GTGTGTGTCTGTTTATGCTC+GGG | + | chr4.4:76643304-76643323 | MS.gene45808:intron | 45.0% | |
| GTTGCAACTTCATCGCTTCT+TGG | + | chr4.4:76641351-76641370 | MS.gene45808:CDS | 45.0% | |
| TCGCTTCTTGGAGTTCCTTT+GGG | + | chr4.4:76641363-76641382 | MS.gene45808:CDS | 45.0% | |
| TGATCGCCACCCAAAACTAA+GGG | - | chr4.4:76642420-76642439 | None:intergenic | 45.0% | |
| TGATGTTGTTGCTGGAGATG+TGG | + | chr4.4:76643577-76643596 | MS.gene45808:CDS | 45.0% | |
| TGCTATGGTAGCTGCTAAGT+TGG | + | chr4.4:76643640-76643659 | MS.gene45808:CDS | 45.0% | |
| TGTGTGTCTGTTTATGCTCG+GGG | + | chr4.4:76643305-76643324 | MS.gene45808:intron | 45.0% | |
| TTCTTCCTTTGCTCGAGTCA+TGG | + | chr4.4:76642563-76642582 | MS.gene45808:CDS | 45.0% | |
| ! | AAACTAGGGGAAGGTGTGAA+AGG | + | chr4.4:76643434-76643453 | MS.gene45808:CDS | 45.0% |
| ! | ATACCAGGTTCTCTAGGAAG+TGG | - | chr4.4:76643258-76643277 | None:intergenic | 45.0% |
| ! | CTCAGAGACGGCTCTAATAA+CGG | - | chr4.4:76642457-76642476 | None:intergenic | 45.0% |
| ! | TCACAGTGCCGTCATGATTT+TGG | - | chr4.4:76642703-76642722 | None:intergenic | 45.0% |
| ! | TCAGAGACGGCTCTAATAAC+GGG | - | chr4.4:76642456-76642475 | None:intergenic | 45.0% |
| ! | TGGTTCTATGTGAGACACTC+CGG | - | chr4.4:76643507-76643526 | None:intergenic | 45.0% |
| !! | TGCTAAGTTGGTGAGGGAAT+TGG | + | chr4.4:76643652-76643671 | MS.gene45808:CDS | 45.0% |
| CATTTGCTCCTCCTCGCATT+AGG | + | chr4.4:76641415-76641434 | MS.gene45808:CDS | 50.0% | |
| CGCTATGGCACTATTGTGTG+TGG | - | chr4.4:76641809-76641828 | None:intergenic | 50.0% | |
| GCACGAGTGCTAACTGATGT+TGG | + | chr4.4:76642096-76642115 | MS.gene45808:CDS | 50.0% | |
| GGAGAACTTGTGCGTGCTTT+GGG | + | chr4.4:76641321-76641340 | MS.gene45808:CDS | 50.0% | |
| GGTTCTATGTGAGACACTCC+GGG | - | chr4.4:76643506-76643525 | None:intergenic | 50.0% | |
| GTGATCGCCACCCAAAACTA+AGG | - | chr4.4:76642421-76642440 | None:intergenic | 50.0% | |
| GTGTCTCACATAGAACCAGG+AGG | + | chr4.4:76643509-76643528 | MS.gene45808:CDS | 50.0% | |
| TCACGGAATGAAAGACCTCC+TGG | - | chr4.4:76643527-76643546 | None:intergenic | 50.0% | |
| TCCTCCAAGCTTCTCAGAGA+CGG | - | chr4.4:76642469-76642488 | None:intergenic | 50.0% | |
| TCCTTTGCTCGAGTCATGGA+GGG | + | chr4.4:76642567-76642586 | MS.gene45808:CDS | 50.0% | |
| TGTTGTCAATTGCGGGTCGT+AGG | + | chr4.4:76641762-76641781 | MS.gene45808:intron | 50.0% | |
| TTCCTTTGCTCGAGTCATGG+AGG | + | chr4.4:76642566-76642585 | MS.gene45808:CDS | 50.0% | |
| TTGCGGGTCGTAGGAAATAG+CGG | + | chr4.4:76641771-76641790 | MS.gene45808:intron | 50.0% | |
| ! | ATTAGGGAGGCCATTTGGTG+TGG | + | chr4.4:76641432-76641451 | MS.gene45808:CDS | 50.0% |
| ! | GGAGTGTCTCACATAGAACC+AGG | + | chr4.4:76643506-76643525 | MS.gene45808:CDS | 50.0% |
| !! | CTTGATCCTGCTTTTGCTCC+CGG | + | chr4.4:76643485-76643504 | MS.gene45808:CDS | 50.0% |
| !! | GGTAGCTGCTAAGTTGGTGA+GGG | + | chr4.4:76643646-76643665 | MS.gene45808:CDS | 50.0% |
| !! | TGGTAGCTGCTAAGTTGGTG+AGG | + | chr4.4:76643645-76643664 | MS.gene45808:CDS | 50.0% |
| ACCCTCCATGACTCGAGCAA+AGG | - | chr4.4:76642571-76642590 | None:intergenic | 55.0% | |
| ATGCGAGGAGGAGCAAATGC+AGG | - | chr4.4:76641414-76641433 | None:intergenic | 55.0% | |
| ATGTCGACGATAGCACGCAG+AGG | + | chr4.4:76641029-76641048 | MS.gene45808:CDS | 55.0% | |
| CAAATGGCCTCCCTAATGCG+AGG | - | chr4.4:76641429-76641448 | None:intergenic | 55.0% | |
| CTATGTTCGGCGACTCTTGC+AGG | + | chr4.4:76642593-76642612 | MS.gene45808:CDS | 55.0% | |
| CTCGCATTAGGGAGGCCATT+TGG | + | chr4.4:76641427-76641446 | MS.gene45808:CDS | 55.0% | |
| GAGCAAATGCAGGCCCTTGA+AGG | - | chr4.4:76641404-76641423 | None:intergenic | 55.0% | |
| GGGAGAACTTGTGCGTGCTT+TGG | + | chr4.4:76641320-76641339 | MS.gene45808:intron | 55.0% | |
| TCGCCACTTCCTAGAGAACC+TGG | + | chr4.4:76643252-76643271 | MS.gene45808:CDS | 55.0% | |
| ! | AGAGCCGTCTCTGAGAAGCT+TGG | + | chr4.4:76642462-76642481 | MS.gene45808:CDS | 55.0% |
| ! | CTCTAGGAAGTGGCGATCTC+TGG | - | chr4.4:76643248-76643267 | None:intergenic | 55.0% |
| ! | CTCTGAGAAGCTTGGAGGAC+CGG | + | chr4.4:76642470-76642489 | MS.gene45808:CDS | 55.0% |
| ! | GAACTTGTGCGTGCTTTGGG+CGG | + | chr4.4:76641324-76641343 | MS.gene45808:CDS | 55.0% |
| ATGGCCTCCCTAATGCGAGG+AGG | - | chr4.4:76641426-76641445 | None:intergenic | 60.0% | |
| GACACTCCGGGAGCAAAAGC+AGG | - | chr4.4:76643494-76643513 | None:intergenic | 60.0% | |
| TAGCGGCAACTACGGCGCTA+TGG | - | chr4.4:76641824-76641843 | None:intergenic | 60.0% | |
| TGCTCCTCCTCGCATTAGGG+AGG | + | chr4.4:76641419-76641438 | MS.gene45808:CDS | 60.0% | |
| ! | GCCGTCTCTGAGAAGCTTGG+AGG | + | chr4.4:76642465-76642484 | MS.gene45808:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 76641029 | 76643694 | 76641029 | ID=MS.gene45808 |
| chr4.4 | mRNA | 76641029 | 76643694 | 76641029 | ID=MS.gene45808.t1;Parent=MS.gene45808 |
| chr4.4 | exon | 76641029 | 76641121 | 76641029 | ID=MS.gene45808.t1.exon1;Parent=MS.gene45808.t1 |
| chr4.4 | CDS | 76641029 | 76641121 | 76641029 | ID=cds.MS.gene45808.t1;Parent=MS.gene45808.t1 |
| chr4.4 | exon | 76641321 | 76641480 | 76641321 | ID=MS.gene45808.t1.exon2;Parent=MS.gene45808.t1 |
| chr4.4 | CDS | 76641321 | 76641480 | 76641321 | ID=cds.MS.gene45808.t1;Parent=MS.gene45808.t1 |
| chr4.4 | exon | 76642079 | 76642212 | 76642079 | ID=MS.gene45808.t1.exon3;Parent=MS.gene45808.t1 |
| chr4.4 | CDS | 76642079 | 76642212 | 76642079 | ID=cds.MS.gene45808.t1;Parent=MS.gene45808.t1 |
| chr4.4 | exon | 76642405 | 76642614 | 76642405 | ID=MS.gene45808.t1.exon4;Parent=MS.gene45808.t1 |
| chr4.4 | CDS | 76642405 | 76642614 | 76642405 | ID=cds.MS.gene45808.t1;Parent=MS.gene45808.t1 |
| chr4.4 | exon | 76643163 | 76643273 | 76643163 | ID=MS.gene45808.t1.exon5;Parent=MS.gene45808.t1 |
| chr4.4 | CDS | 76643163 | 76643273 | 76643163 | ID=cds.MS.gene45808.t1;Parent=MS.gene45808.t1 |
| chr4.4 | exon | 76643434 | 76643694 | 76643434 | ID=MS.gene45808.t1.exon6;Parent=MS.gene45808.t1 |
| chr4.4 | CDS | 76643434 | 76643694 | 76643434 | ID=cds.MS.gene45808.t1;Parent=MS.gene45808.t1 |
| Gene Sequence |
| Protein sequence |
