Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48211.t1 | XP_024636707.1 | 91.1 | 338 | 2 | 1 | 1 | 310 | 1 | 338 | 1.20E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48211.t1 | P46637 | 79.0 | 338 | 40 | 1 | 4 | 310 | 5 | 342 | 7.4e-148 | 524.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48211.t1 | I3SM21 | 91.1 | 338 | 2 | 1 | 1 | 310 | 1 | 338 | 8.3e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51627 | MS.gene48211 | PPI |
| MS.gene48211 | MS.gene059183 | PPI |
| MS.gene48211 | MS.gene56256 | PPI |
| MS.gene009458 | MS.gene48211 | PPI |
| MS.gene48960 | MS.gene48211 | PPI |
| MS.gene48211 | MS.gene45808 | PPI |
| MS.gene63514 | MS.gene48211 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48211.t1 | MTR_4g024960 | 74.260 | 338 | 59 | 1 | 1 | 310 | 1 | 338 | 0.0 | 508 |
| MS.gene48211.t1 | MTR_4g024940 | 87.013 | 231 | 2 | 1 | 1 | 203 | 6 | 236 | 5.07e-142 | 400 |
| MS.gene48211.t1 | MTR_0088s0100 | 53.674 | 313 | 129 | 5 | 3 | 310 | 61 | 362 | 1.79e-106 | 315 |
| MS.gene48211.t1 | MTR_4g019730 | 79.070 | 43 | 9 | 0 | 182 | 224 | 51 | 93 | 9.15e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48211.t1 | AT4G08900 | 78.994 | 338 | 40 | 1 | 4 | 310 | 5 | 342 | 0.0 | 538 |
| MS.gene48211.t1 | AT4G08870 | 72.093 | 344 | 62 | 1 | 1 | 310 | 1 | 344 | 0.0 | 505 |
| MS.gene48211.t1 | AT4G08870 | 67.442 | 258 | 50 | 1 | 1 | 224 | 1 | 258 | 3.59e-124 | 356 |
Find 78 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTCATCATAGTTATC+AGG | 0.221630 | 4.2:-78189258 | None:intergenic |
| ATCCCTTCTTGGAGTTCCTT+TGG | 0.249571 | 4.2:+78188054 | MS.gene48211:CDS |
| GGGAGAACTCGTGCGTGCTC+TGG | 0.274449 | 4.2:+78188012 | MS.gene48211:intron |
| CTATGTTCGGCGACTCTTGC+AGG | 0.289024 | 4.2:+78189332 | MS.gene48211:CDS |
| TCCCTTCTTGGAGTTCCTTT+GGG | 0.295664 | 4.2:+78188055 | MS.gene48211:CDS |
| GTAGCAACTTCATCCCTTCT+TGG | 0.304058 | 4.2:+78188043 | MS.gene48211:CDS |
| CAATCTCGAATTTCTTGAAT+AGG | 0.305513 | 4.2:-78188865 | None:intergenic |
| TCCGTTAAGACCCTTAGTTT+TGG | 0.364007 | 4.2:+78189146 | MS.gene48211:CDS |
| AATCTCGAATTTCTTGAATA+GGG | 0.366222 | 4.2:-78188864 | None:intergenic |
| CTCTAGGAAGTGGCGGTCTC+TGG | 0.375979 | 4.2:-78190020 | None:intergenic |
| CCCAAAACTAAGGGTCTTAA+CGG | 0.380269 | 4.2:-78189147 | None:intergenic |
| GATAACTATGATGAATTTGA+AGG | 0.396018 | 4.2:+78189261 | MS.gene48211:CDS |
| CATAATTCATCTTTCCTTCA+AGG | 0.400561 | 4.2:+78188079 | MS.gene48211:CDS |
| AACCATGAATATACCTTCTT+CGG | 0.400673 | 4.2:-78188164 | None:intergenic |
| GGAGAACTCGTGCGTGCTCT+GGG | 0.404015 | 4.2:+78188013 | MS.gene48211:CDS |
| CTTCAAGGTGATGTTGTTGC+TGG | 0.413690 | 4.2:+78190335 | MS.gene48211:CDS |
| CTCTGAGAAGCTTGGAGGAC+AGG | 0.417354 | 4.2:+78189209 | MS.gene48211:CDS |
| CTCGCATTAGAGAGGCCATT+TGG | 0.421587 | 4.2:+78188119 | MS.gene48211:CDS |
| GATTTACTTGTGCAGAAACT+AGG | 0.423851 | 4.2:+78190185 | MS.gene48211:intron |
| CTCAGAGACGGCTCTGATAA+CGG | 0.450048 | 4.2:-78189193 | None:intergenic |
| TCAGAGACGGCTCTGATAAC+GGG | 0.454860 | 4.2:-78189192 | None:intergenic |
| AATTCAATCTCTGCATGTAA+TGG | 0.461435 | 4.2:-78187736 | None:intergenic |
| AACATCCTACACAATCTTCA+AGG | 0.471336 | 4.2:+78190320 | MS.gene48211:CDS |
| AGCCAATTCTCTCACCAACT+TGG | 0.472502 | 4.2:-78190420 | None:intergenic |
| GTGATCACCACCCAAAACTA+AGG | 0.477869 | 4.2:-78189157 | None:intergenic |
| AGAGACATACCAGGTTCTCT+AGG | 0.483921 | 4.2:-78190036 | None:intergenic |
| GTGCAAATGCAGGTCCTTGA+AGG | 0.492883 | 4.2:-78188093 | None:intergenic |
| TGGTTCTATGTGAGACACTC+CGG | 0.492904 | 4.2:-78190270 | None:intergenic |
| TTCTTCCTTTGCTCGAGTCA+TGG | 0.493089 | 4.2:+78189302 | MS.gene48211:CDS |
| GTTTGTGCTACCACACCAAA+TGG | 0.495581 | 4.2:-78188134 | None:intergenic |
| ATTTACTTGTGCAGAAACTA+GGG | 0.501074 | 4.2:+78190186 | MS.gene48211:intron |
| TCATGGAGGGTAACTATGTT+CGG | 0.503666 | 4.2:+78189319 | MS.gene48211:CDS |
| CAAATTCATCATAGTTATCA+GGG | 0.516922 | 4.2:-78189257 | None:intergenic |
| GCCGTCTCTGAGAAGCTTGG+AGG | 0.521520 | 4.2:+78189204 | MS.gene48211:CDS |
| TCCTTTGCTCGAGTCATGGA+GGG | 0.526222 | 4.2:+78189306 | MS.gene48211:CDS |
| CCGCCACTTCCTAGAGAACC+TGG | 0.528589 | 4.2:+78190027 | MS.gene48211:CDS |
| TGCCAAGTTGGTGAGAGAAT+TGG | 0.530386 | 4.2:+78190418 | MS.gene48211:CDS |
| GACACTCCGGGAGCAAAAGC+AGG | 0.531124 | 4.2:-78190257 | None:intergenic |
| GGTTCTATGTGAGACACTCC+GGG | 0.532823 | 4.2:-78190269 | None:intergenic |
| ACAAACTCAACAACCGAAGA+AGG | 0.533655 | 4.2:+78188151 | MS.gene48211:CDS |
| ATTCAAGAAATTCGAGATTG+TGG | 0.534207 | 4.2:+78188868 | MS.gene48211:CDS |
| CATCGACAGTATCACGTTGT+GGG | 0.535874 | 4.2:-78190376 | None:intergenic |
| GTCCCAAAGGAACTCCAAGA+AGG | 0.543487 | 4.2:-78188057 | None:intergenic |
| CATAGATTGATGAATGTCAT+TGG | 0.546830 | 4.2:+78188901 | MS.gene48211:CDS |
| ATGCGAGGAGGTGCAAATGC+AGG | 0.550196 | 4.2:-78188103 | None:intergenic |
| TGATGTTGTTGCTGGAGATG+TGG | 0.553198 | 4.2:+78190343 | MS.gene48211:CDS |
| TCCTCCAAGCTTCTCAGAGA+CGG | 0.565146 | 4.2:-78189205 | None:intergenic |
| ATACCAGGTTCTCTAGGAAG+TGG | 0.566389 | 4.2:-78190030 | None:intergenic |
| CCATCGACAGTATCACGTTG+TGG | 0.568665 | 4.2:-78190377 | None:intergenic |
| TCGCGGAAAGAAAGACCTCC+TGG | 0.571109 | 4.2:-78190290 | None:intergenic |
| AAACTAGGGGAAGGTGTGAA+AGG | 0.572287 | 4.2:+78190200 | MS.gene48211:CDS |
| ATTCGTTCAATAACAACTGA+AGG | 0.575794 | 4.2:+78189944 | MS.gene48211:CDS |
| TCCCAAAGGAACTCCAAGAA+GGG | 0.577519 | 4.2:-78188056 | None:intergenic |
| AGAGCCGTCTCTGAGAAGCT+TGG | 0.577664 | 4.2:+78189201 | MS.gene48211:CDS |
| TGCTATGGTAGCTGCCAAGT+TGG | 0.585931 | 4.2:+78190406 | MS.gene48211:CDS |
| TGTATATATCTCAATAGATG+TGG | 0.586320 | 4.2:+78190223 | MS.gene48211:CDS |
| ACCCTCCATGACTCGAGCAA+AGG | 0.586892 | 4.2:-78189307 | None:intergenic |
| TGCACCTCCTCGCATTAGAG+AGG | 0.590940 | 4.2:+78188111 | MS.gene48211:CDS |
| TGTCAAGTTAGTGATGGAAG+AGG | 0.598921 | 4.2:+78188930 | MS.gene48211:CDS |
| TTCCTTTGCTCGAGTCATGG+AGG | 0.602924 | 4.2:+78189305 | MS.gene48211:CDS |
| ATTAGAGAGGCCATTTGGTG+TGG | 0.604583 | 4.2:+78188124 | MS.gene48211:CDS |
| AAAGATGAATTATGTCCCAA+AGG | 0.606316 | 4.2:-78188070 | None:intergenic |
| TGATCACCACCCAAAACTAA+GGG | 0.632083 | 4.2:-78189156 | None:intergenic |
| TGAATCTGTCAAGTTAGTGA+TGG | 0.632395 | 4.2:+78188924 | MS.gene48211:CDS |
| CCAGGTTCTCTAGGAAGTGG+CGG | 0.634049 | 4.2:-78190027 | None:intergenic |
| CATCACCTTGAAGATTGTGT+AGG | 0.638689 | 4.2:-78190325 | None:intergenic |
| GCACGAGTGCTAACTGATGT+TGG | 0.639119 | 4.2:+78188835 | MS.gene48211:CDS |
| TGTCGATGGAATGACTGCTA+TGG | 0.640459 | 4.2:+78190391 | MS.gene48211:CDS |
| GGAGTGTCTCACATAGAACC+AGG | 0.643921 | 4.2:+78190272 | MS.gene48211:CDS |
| GAACTCGTGCGTGCTCTGGG+AGG | 0.646286 | 4.2:+78188016 | MS.gene48211:CDS |
| CCACAACGTGATACTGTCGA+TGG | 0.650280 | 4.2:+78190377 | MS.gene48211:CDS |
| CTTGTGCAGAAACTAGGGGA+AGG | 0.662379 | 4.2:+78190191 | MS.gene48211:intron |
| CAAATGGCCTCTCTAATGCG+AGG | 0.681974 | 4.2:-78188118 | None:intergenic |
| TTTACTTGTGCAGAAACTAG+GGG | 0.686309 | 4.2:+78190187 | MS.gene48211:intron |
| ATGGCCTCTCTAATGCGAGG+AGG | 0.710992 | 4.2:-78188115 | None:intergenic |
| ATGTCGACGATAGCACGCAG+AGG | 0.744018 | 4.2:+78187710 | MS.gene48211:CDS |
| GTGTCTCACATAGAACCAGG+AGG | 0.775201 | 4.2:+78190275 | MS.gene48211:CDS |
| GTAGGATGTTAAGAACATCG+CGG | 0.825273 | 4.2:-78190307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTAATTTATTTC+AGG | + | chr4.2:78189916-78189935 | MS.gene48211:intron | 10.0% |
| !! | TGAGTATCTTATATAATTAT+AGG | - | chr4.2:78188762-78188781 | None:intergenic | 15.0% |
| !! | TTGCAAAATCAAAAATTAAT+AGG | - | chr4.2:78187923-78187942 | None:intergenic | 15.0% |
| !!! | CATTATTATTTTGATTATTC+AGG | + | chr4.2:78188796-78188815 | MS.gene48211:intron | 15.0% |
| !!! | TTTTGATTTTGCAATTTATT+TGG | + | chr4.2:78187929-78187948 | MS.gene48211:intron | 15.0% |
| !! | AACAAAATATTGTCAAATAG+CGG | - | chr4.2:78188544-78188563 | None:intergenic | 20.0% |
| !! | ATTAACAAATTAAAGCATGA+AGG | - | chr4.2:78189909-78189928 | None:intergenic | 20.0% |
| !! | TATAAAATTAAGTGCATGTT+TGG | - | chr4.2:78189545-78189564 | None:intergenic | 20.0% |
| !!! | AAGCAAAATATTTTGCAAAA+TGG | + | chr4.2:78190099-78190118 | MS.gene48211:intron | 20.0% |
| !!! | ATGAAGGTATATATGTTTAT+AGG | - | chr4.2:78189009-78189028 | None:intergenic | 20.0% |
| !!! | TGAAGGTATATATGTTTATA+GGG | - | chr4.2:78189008-78189027 | None:intergenic | 20.0% |
| !!! | TTATTTTGATTATTCAGGTA+AGG | + | chr4.2:78188801-78188820 | MS.gene48211:intron | 20.0% |
| !!! | TTTGTTAATTTATTTCAGGT+TGG | + | chr4.2:78189920-78189939 | MS.gene48211:intron | 20.0% |
| ! | AAGAATCAAGAATACAAATG+TGG | + | chr4.2:78188309-78188328 | MS.gene48211:intron | 25.0% |
| ! | AATCTCGAATTTCTTGAATA+GGG | - | chr4.2:78188867-78188886 | None:intergenic | 25.0% |
| ! | ACAAAATCACAATTTAGACT+CGG | - | chr4.2:78188237-78188256 | None:intergenic | 25.0% |
| ! | ATACGAGCAACAAATTTAAT+GGG | + | chr4.2:78188675-78188694 | MS.gene48211:intron | 25.0% |
| ! | CAAATTCATCATAGTTATCA+GGG | - | chr4.2:78189260-78189279 | None:intergenic | 25.0% |
| ! | GAGTACATAAAATATGTCTA+TGG | - | chr4.2:78188375-78188394 | None:intergenic | 25.0% |
| ! | GATAACTATGATGAATTTGA+AGG | + | chr4.2:78189261-78189280 | MS.gene48211:CDS | 25.0% |
| ! | TCAAATTCATCATAGTTATC+AGG | - | chr4.2:78189261-78189280 | None:intergenic | 25.0% |
| ! | TGTATATATCTCAATAGATG+TGG | + | chr4.2:78190223-78190242 | MS.gene48211:CDS | 25.0% |
| ! | TTATTCATTGCATGAAATCT+AGG | + | chr4.2:78188279-78188298 | MS.gene48211:intron | 25.0% |
| !! | ACATATTTTATGTACTCTTG+TGG | + | chr4.2:78188378-78188397 | MS.gene48211:intron | 25.0% |
| !!! | TATTATGTTGTTTTGAGATC+CGG | + | chr4.2:78190132-78190151 | MS.gene48211:intron | 25.0% |
| AAAGATGAATTATGTCCCAA+AGG | - | chr4.2:78188073-78188092 | None:intergenic | 30.0% | |
| AACCATGAATATACCTTCTT+CGG | - | chr4.2:78188167-78188186 | None:intergenic | 30.0% | |
| AATTCAATCTCTGCATGTAA+TGG | - | chr4.2:78187739-78187758 | None:intergenic | 30.0% | |
| ACAAATGTGGATATTCTACT+TGG | + | chr4.2:78188322-78188341 | MS.gene48211:intron | 30.0% | |
| AGACATACATTAAACCGTTT+AGG | - | chr4.2:78189401-78189420 | None:intergenic | 30.0% | |
| AGACTGACATTTATAACCAA+AGG | - | chr4.2:78189855-78189874 | None:intergenic | 30.0% | |
| ATGACATATCTTACAAACCA+TGG | - | chr4.2:78189882-78189901 | None:intergenic | 30.0% | |
| ATGTCATTAAGTTATGAGAG+TGG | + | chr4.2:78189642-78189661 | MS.gene48211:intron | 30.0% | |
| ATTCAAGAAATTCGAGATTG+TGG | + | chr4.2:78188868-78188887 | MS.gene48211:CDS | 30.0% | |
| ATTCGTTCAATAACAACTGA+AGG | + | chr4.2:78189944-78189963 | MS.gene48211:CDS | 30.0% | |
| ATTTACTTGTGCAGAAACTA+GGG | + | chr4.2:78190186-78190205 | MS.gene48211:intron | 30.0% | |
| CAATATATTGAGCATGATGA+AGG | - | chr4.2:78189025-78189044 | None:intergenic | 30.0% | |
| CAATCTCGAATTTCTTGAAT+AGG | - | chr4.2:78188868-78188887 | None:intergenic | 30.0% | |
| CATAATTCATCTTTCCTTCA+AGG | + | chr4.2:78188079-78188098 | MS.gene48211:CDS | 30.0% | |
| CATACGAGCAACAAATTTAA+TGG | + | chr4.2:78188674-78188693 | MS.gene48211:intron | 30.0% | |
| CATAGATTGATGAATGTCAT+TGG | + | chr4.2:78188901-78188920 | MS.gene48211:CDS | 30.0% | |
| TAAACGGTTTAATGTATGTC+TGG | + | chr4.2:78189400-78189419 | MS.gene48211:intron | 30.0% | |
| TATTAAATAGTAGCGCTGTA+TGG | - | chr4.2:78188614-78188633 | None:intergenic | 30.0% | |
| TGAATTTGACAAAATCACGA+TGG | + | chr4.2:78189509-78189528 | MS.gene48211:intron | 30.0% | |
| TGAATTTGCCAAAATCATGA+TGG | + | chr4.2:78189431-78189450 | MS.gene48211:intron | 30.0% | |
| TGACATATCTTACAAACCAT+GGG | - | chr4.2:78189881-78189900 | None:intergenic | 30.0% | |
| TGACTGAATCTTAGTTTCTT+TGG | + | chr4.2:78187889-78187908 | MS.gene48211:intron | 30.0% | |
| ! | TGAATACTTTTACGATCTTG+AGG | - | chr4.2:78188192-78188211 | None:intergenic | 30.0% |
| !! | TGTATTTTCTGAGGATAACA+TGG | + | chr4.2:78188402-78188421 | MS.gene48211:intron | 30.0% |
| AACATCCTACACAATCTTCA+AGG | + | chr4.2:78190320-78190339 | MS.gene48211:CDS | 35.0% | |
| ATAGAAATTGCTTCTCTGCA+GGG | + | chr4.2:78187992-78188011 | MS.gene48211:intron | 35.0% | |
| CATCTACACTCAACGAAAAA+CGG | - | chr4.2:78189703-78189722 | None:intergenic | 35.0% | |
| GAGAACACTGTCAAATGATT+TGG | + | chr4.2:78188981-78189000 | MS.gene48211:intron | 35.0% | |
| GATTTACTTGTGCAGAAACT+AGG | + | chr4.2:78190185-78190204 | MS.gene48211:intron | 35.0% | |
| GCTTAAGGCAAGTCATTATT+TGG | + | chr4.2:78187844-78187863 | MS.gene48211:intron | 35.0% | |
| TAGAGAAAGAGCAAAGCTTA+AGG | + | chr4.2:78187829-78187848 | MS.gene48211:intron | 35.0% | |
| TATAGAAATTGCTTCTCTGC+AGG | + | chr4.2:78187991-78188010 | MS.gene48211:intron | 35.0% | |
| TGAATCTGTCAAGTTAGTGA+TGG | + | chr4.2:78188924-78188943 | MS.gene48211:CDS | 35.0% | |
| TGCTTCTCTTATGTCCTAAA+CGG | + | chr4.2:78189384-78189403 | MS.gene48211:intron | 35.0% | |
| TGTTATTACAGAGAACAACC+AGG | - | chr4.2:78189588-78189607 | None:intergenic | 35.0% | |
| TTTACTTGTGCAGAAACTAG+GGG | + | chr4.2:78190187-78190206 | MS.gene48211:intron | 35.0% | |
| ! | AACCGAAGAAGGTATATTCA+TGG | + | chr4.2:78188162-78188181 | MS.gene48211:intron | 35.0% |
| ! | AATTCAAGCCACCACAATTT+TGG | - | chr4.2:78189495-78189514 | None:intergenic | 35.0% |
| ! | GTATGACCACTTTAGCTTAT+AGG | - | chr4.2:78188659-78188678 | None:intergenic | 35.0% |
| ! | TCTTGTGGTTGTATTTTCTG+AGG | + | chr4.2:78188393-78188412 | MS.gene48211:intron | 35.0% |
| ! | TGTAGCTTTTGCCAAAATTG+TGG | + | chr4.2:78189481-78189500 | MS.gene48211:intron | 35.0% |
| !! | ACTTGGACTTTTGTGTTGTT+AGG | + | chr4.2:78188339-78188358 | MS.gene48211:intron | 35.0% |
| !! | ATTGGTGTTTTTCTGAACCT+TGG | + | chr4.2:78190161-78190180 | MS.gene48211:intron | 35.0% |
| !!! | GCTTTTCTGAAACATAAACC+TGG | + | chr4.2:78189567-78189586 | MS.gene48211:intron | 35.0% |
| ACAAACTCAACAACCGAAGA+AGG | + | chr4.2:78188151-78188170 | MS.gene48211:CDS | 40.0% | |
| CATCACCTTGAAGATTGTGT+AGG | - | chr4.2:78190328-78190347 | None:intergenic | 40.0% | |
| CATGTTGTCCACATTCTTTC+AGG | + | chr4.2:78189122-78189141 | MS.gene48211:intron | 40.0% | |
| CCCAAAACTAAGGGTCTTAA+CGG | - | chr4.2:78189150-78189169 | None:intergenic | 40.0% | |
| GAAAAACACCAATGAAGCAC+CGG | - | chr4.2:78190154-78190173 | None:intergenic | 40.0% | |
| GAAAGAATGTGGACAACATG+AGG | - | chr4.2:78189122-78189141 | None:intergenic | 40.0% | |
| GAATACTGATACAAGAAGCG+TGG | - | chr4.2:78188736-78188755 | None:intergenic | 40.0% | |
| GTAGGATGTTAAGAACATCG+CGG | - | chr4.2:78190310-78190329 | None:intergenic | 40.0% | |
| GTGCGCAAGCAAAAAAGTTT+GGG | + | chr4.2:78189969-78189988 | MS.gene48211:CDS | 40.0% | |
| TAAATGTCAGTCTTCACCCA+TGG | + | chr4.2:78189862-78189881 | MS.gene48211:intron | 40.0% | |
| TCACTGCCTATAAGCTAAAG+TGG | + | chr4.2:78188650-78188669 | MS.gene48211:intron | 40.0% | |
| TCATGGAGGGTAACTATGTT+CGG | + | chr4.2:78189319-78189338 | MS.gene48211:CDS | 40.0% | |
| TCGCAGATCGCATAAAATAG+CGG | + | chr4.2:78188474-78188493 | MS.gene48211:intron | 40.0% | |
| TCTGCACAAGTAAATCACCA+AGG | - | chr4.2:78190181-78190200 | None:intergenic | 40.0% | |
| TCTTCTGCTTTGCTAGAGAA+TGG | + | chr4.2:78187770-78187789 | MS.gene48211:intron | 40.0% | |
| TGATCACCACCCAAAACTAA+GGG | - | chr4.2:78189159-78189178 | None:intergenic | 40.0% | |
| TGCGCAAGCAAAAAAGTTTG+GGG | + | chr4.2:78189970-78189989 | MS.gene48211:CDS | 40.0% | |
| TGTTTGCGTGTGTATATGCT+CGG | + | chr4.2:78190070-78190089 | MS.gene48211:intron | 40.0% | |
| TTGCTGCAAGTTCTTTCCTT+TGG | + | chr4.2:78189836-78189855 | MS.gene48211:intron | 40.0% | |
| TTGTCAAATAGCGGCTACAA+CGG | - | chr4.2:78188535-78188554 | None:intergenic | 40.0% | |
| ! | AGCTTTTGCCAAAATTGTGG+TGG | + | chr4.2:78189484-78189503 | MS.gene48211:intron | 40.0% |
| ! | CTATTTTATGCGATCTGCGA+TGG | - | chr4.2:78188474-78188493 | None:intergenic | 40.0% |
| ! | TAACGGATCCTGAAAGAATG+TGG | - | chr4.2:78189133-78189152 | None:intergenic | 40.0% |
| ! | TCACAGTGCCATCATGATTT+TGG | - | chr4.2:78189442-78189461 | None:intergenic | 40.0% |
| ! | TCCGTTAAGACCCTTAGTTT+TGG | + | chr4.2:78189146-78189165 | MS.gene48211:CDS | 40.0% |
| ! | TGTCAAGTTAGTGATGGAAG+AGG | + | chr4.2:78188930-78188949 | MS.gene48211:CDS | 40.0% |
| !! | CCGTTAAGACCCTTAGTTTT+GGG | + | chr4.2:78189147-78189166 | MS.gene48211:CDS | 40.0% |
| !!! | AAGCATCGATCACACGATTT+TGG | - | chr4.2:78187796-78187815 | None:intergenic | 40.0% |
| !!! | TTAAGACCCTTAGTTTTGGG+TGG | + | chr4.2:78189150-78189169 | MS.gene48211:CDS | 40.0% |
| AGAGACATACCAGGTTCTCT+AGG | - | chr4.2:78190039-78190058 | None:intergenic | 45.0% | |
| AGCCAATTCTCTCACCAACT+TGG | - | chr4.2:78190423-78190442 | None:intergenic | 45.0% | |
| ATCCCTTCTTGGAGTTCCTT+TGG | + | chr4.2:78188054-78188073 | MS.gene48211:CDS | 45.0% | |
| CATCGACAGTATCACGTTGT+GGG | - | chr4.2:78190379-78190398 | None:intergenic | 45.0% | |
| CGTGCGCAAGCAAAAAAGTT+TGG | + | chr4.2:78189968-78189987 | MS.gene48211:CDS | 45.0% | |
| CTTCAAGGTGATGTTGTTGC+TGG | + | chr4.2:78190335-78190354 | MS.gene48211:CDS | 45.0% | |
| GTAGCAACTTCATCCCTTCT+TGG | + | chr4.2:78188043-78188062 | MS.gene48211:CDS | 45.0% | |
| GTGATCACCACCCAAAACTA+AGG | - | chr4.2:78189160-78189179 | None:intergenic | 45.0% | |
| GTTTGCGTGTGTATATGCTC+GGG | + | chr4.2:78190071-78190090 | MS.gene48211:intron | 45.0% | |
| GTTTGTGCTACCACACCAAA+TGG | - | chr4.2:78188137-78188156 | None:intergenic | 45.0% | |
| TCCCAAAGGAACTCCAAGAA+GGG | - | chr4.2:78188059-78188078 | None:intergenic | 45.0% | |
| TCCCTTCTTGGAGTTCCTTT+GGG | + | chr4.2:78188055-78188074 | MS.gene48211:CDS | 45.0% | |
| TGATGTTGTTGCTGGAGATG+TGG | + | chr4.2:78190343-78190362 | MS.gene48211:CDS | 45.0% | |
| TGTCGATGGAATGACTGCTA+TGG | + | chr4.2:78190391-78190410 | MS.gene48211:CDS | 45.0% | |
| TTCTTCCTTTGCTCGAGTCA+TGG | + | chr4.2:78189302-78189321 | MS.gene48211:CDS | 45.0% | |
| ! | AAACTAGGGGAAGGTGTGAA+AGG | + | chr4.2:78190200-78190219 | MS.gene48211:CDS | 45.0% |
| ! | ATACCAGGTTCTCTAGGAAG+TGG | - | chr4.2:78190033-78190052 | None:intergenic | 45.0% |
| ! | ATTAGAGAGGCCATTTGGTG+TGG | + | chr4.2:78188124-78188143 | MS.gene48211:CDS | 45.0% |
| ! | TGGTTCTATGTGAGACACTC+CGG | - | chr4.2:78190273-78190292 | None:intergenic | 45.0% |
| ! | TTTGAGATCCGGTGCTTCAT+TGG | + | chr4.2:78190143-78190162 | MS.gene48211:intron | 45.0% |
| !! | TGCCAAGTTGGTGAGAGAAT+TGG | + | chr4.2:78190418-78190437 | MS.gene48211:CDS | 45.0% |
| CAAATGGCCTCTCTAATGCG+AGG | - | chr4.2:78188121-78188140 | None:intergenic | 50.0% | |
| CCACAACGTGATACTGTCGA+TGG | + | chr4.2:78190377-78190396 | MS.gene48211:CDS | 50.0% | |
| CCATCGACAGTATCACGTTG+TGG | - | chr4.2:78190380-78190399 | None:intergenic | 50.0% | |
| CGCTATGGCACTATTGTGTG+TGG | - | chr4.2:78188512-78188531 | None:intergenic | 50.0% | |
| CTCGCATTAGAGAGGCCATT+TGG | + | chr4.2:78188119-78188138 | MS.gene48211:CDS | 50.0% | |
| CTTGTGCAGAAACTAGGGGA+AGG | + | chr4.2:78190191-78190210 | MS.gene48211:intron | 50.0% | |
| GAGACAGAGAGAGACATACC+AGG | - | chr4.2:78190048-78190067 | None:intergenic | 50.0% | |
| GCACGAGTGCTAACTGATGT+TGG | + | chr4.2:78188835-78188854 | MS.gene48211:CDS | 50.0% | |
| GGTTCTATGTGAGACACTCC+GGG | - | chr4.2:78190272-78190291 | None:intergenic | 50.0% | |
| GTCCCAAAGGAACTCCAAGA+AGG | - | chr4.2:78188060-78188079 | None:intergenic | 50.0% | |
| GTGCAAATGCAGGTCCTTGA+AGG | - | chr4.2:78188096-78188115 | None:intergenic | 50.0% | |
| GTGTCTCACATAGAACCAGG+AGG | + | chr4.2:78190275-78190294 | MS.gene48211:CDS | 50.0% | |
| TCCTCCAAGCTTCTCAGAGA+CGG | - | chr4.2:78189208-78189227 | None:intergenic | 50.0% | |
| TCCTTTGCTCGAGTCATGGA+GGG | + | chr4.2:78189306-78189325 | MS.gene48211:CDS | 50.0% | |
| TGCTATGGTAGCTGCCAAGT+TGG | + | chr4.2:78190406-78190425 | MS.gene48211:CDS | 50.0% | |
| TTCCTTTGCTCGAGTCATGG+AGG | + | chr4.2:78189305-78189324 | MS.gene48211:CDS | 50.0% | |
| ! | CTCAGAGACGGCTCTGATAA+CGG | - | chr4.2:78189196-78189215 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCACATAGAACC+AGG | + | chr4.2:78190272-78190291 | MS.gene48211:CDS | 50.0% |
| ! | TCAGAGACGGCTCTGATAAC+GGG | - | chr4.2:78189195-78189214 | None:intergenic | 50.0% |
| !! | CTTGATCCTGCTTTTGCTCC+CGG | + | chr4.2:78190251-78190270 | MS.gene48211:CDS | 50.0% |
| ACCCTCCATGACTCGAGCAA+AGG | - | chr4.2:78189310-78189329 | None:intergenic | 55.0% | |
| ATGGCCTCTCTAATGCGAGG+AGG | - | chr4.2:78188118-78188137 | None:intergenic | 55.0% | |
| ATGTCGACGATAGCACGCAG+AGG | + | chr4.2:78187710-78187729 | MS.gene48211:CDS | 55.0% | |
| CTATGTTCGGCGACTCTTGC+AGG | + | chr4.2:78189332-78189351 | MS.gene48211:CDS | 55.0% | |
| TCGCGGAAAGAAAGACCTCC+TGG | - | chr4.2:78190293-78190312 | None:intergenic | 55.0% | |
| TGCACCTCCTCGCATTAGAG+AGG | + | chr4.2:78188111-78188130 | MS.gene48211:CDS | 55.0% | |
| ! | AGAGCCGTCTCTGAGAAGCT+TGG | + | chr4.2:78189201-78189220 | MS.gene48211:CDS | 55.0% |
| ! | ATGCGAGGAGGTGCAAATGC+AGG | - | chr4.2:78188106-78188125 | None:intergenic | 55.0% |
| ! | CCAGGTTCTCTAGGAAGTGG+CGG | - | chr4.2:78190030-78190049 | None:intergenic | 55.0% |
| ! | CTCTGAGAAGCTTGGAGGAC+AGG | + | chr4.2:78189209-78189228 | MS.gene48211:CDS | 55.0% |
| CCGCCACTTCCTAGAGAACC+TGG | + | chr4.2:78190027-78190046 | MS.gene48211:CDS | 60.0% | |
| GACACTCCGGGAGCAAAAGC+AGG | - | chr4.2:78190260-78190279 | None:intergenic | 60.0% | |
| GGAGAACTCGTGCGTGCTCT+GGG | + | chr4.2:78188013-78188032 | MS.gene48211:CDS | 60.0% | |
| TAGCGGCTACAACGGCGCTA+TGG | - | chr4.2:78188527-78188546 | None:intergenic | 60.0% | |
| ! | CTCTAGGAAGTGGCGGTCTC+TGG | - | chr4.2:78190023-78190042 | None:intergenic | 60.0% |
| ! | GCCGTCTCTGAGAAGCTTGG+AGG | + | chr4.2:78189204-78189223 | MS.gene48211:CDS | 60.0% |
| GGGAGAACTCGTGCGTGCTC+TGG | + | chr4.2:78188012-78188031 | MS.gene48211:intron | 65.0% | |
| ! | GAACTCGTGCGTGCTCTGGG+AGG | + | chr4.2:78188016-78188035 | MS.gene48211:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 78187710 | 78190460 | 78187710 | ID=MS.gene48211 |
| chr4.2 | mRNA | 78187710 | 78190460 | 78187710 | ID=MS.gene48211.t1;Parent=MS.gene48211 |
| chr4.2 | exon | 78187710 | 78187766 | 78187710 | ID=MS.gene48211.t1.exon1;Parent=MS.gene48211.t1 |
| chr4.2 | CDS | 78187710 | 78187766 | 78187710 | ID=cds.MS.gene48211.t1;Parent=MS.gene48211.t1 |
| chr4.2 | exon | 78188013 | 78188172 | 78188013 | ID=MS.gene48211.t1.exon2;Parent=MS.gene48211.t1 |
| chr4.2 | CDS | 78188013 | 78188172 | 78188013 | ID=cds.MS.gene48211.t1;Parent=MS.gene48211.t1 |
| chr4.2 | exon | 78188818 | 78188951 | 78188818 | ID=MS.gene48211.t1.exon3;Parent=MS.gene48211.t1 |
| chr4.2 | CDS | 78188818 | 78188951 | 78188818 | ID=cds.MS.gene48211.t1;Parent=MS.gene48211.t1 |
| chr4.2 | exon | 78189144 | 78189353 | 78189144 | ID=MS.gene48211.t1.exon4;Parent=MS.gene48211.t1 |
| chr4.2 | CDS | 78189144 | 78189353 | 78189144 | ID=cds.MS.gene48211.t1;Parent=MS.gene48211.t1 |
| chr4.2 | exon | 78189938 | 78190048 | 78189938 | ID=MS.gene48211.t1.exon5;Parent=MS.gene48211.t1 |
| chr4.2 | CDS | 78189938 | 78190048 | 78189938 | ID=cds.MS.gene48211.t1;Parent=MS.gene48211.t1 |
| chr4.2 | exon | 78190200 | 78190460 | 78190200 | ID=MS.gene48211.t1.exon6;Parent=MS.gene48211.t1 |
| chr4.2 | CDS | 78190200 | 78190460 | 78190200 | ID=cds.MS.gene48211.t1;Parent=MS.gene48211.t1 |
| Gene Sequence |
| Protein sequence |
