Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48960.t1 | XP_024636707.1 | 91.1 | 338 | 2 | 1 | 1 | 310 | 1 | 338 | 1.20E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48960.t1 | P46637 | 79.0 | 338 | 40 | 1 | 4 | 310 | 5 | 342 | 7.4e-148 | 524.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48960.t1 | I3SM21 | 91.1 | 338 | 2 | 1 | 1 | 310 | 1 | 338 | 8.3e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48960 | MS.gene45808 | PPI |
| MS.gene48960 | MS.gene63514 | PPI |
| MS.gene48960 | MS.gene059183 | PPI |
| MS.gene51627 | MS.gene48960 | PPI |
| MS.gene009458 | MS.gene48960 | PPI |
| MS.gene48960 | MS.gene48211 | PPI |
| MS.gene48960 | MS.gene56256 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48960.t1 | MTR_4g024960 | 74.260 | 338 | 59 | 1 | 1 | 310 | 1 | 338 | 0.0 | 508 |
| MS.gene48960.t1 | MTR_4g024940 | 87.013 | 231 | 2 | 1 | 1 | 203 | 6 | 236 | 5.07e-142 | 400 |
| MS.gene48960.t1 | MTR_0088s0100 | 53.674 | 313 | 129 | 5 | 3 | 310 | 61 | 362 | 1.79e-106 | 315 |
| MS.gene48960.t1 | MTR_4g019730 | 79.070 | 43 | 9 | 0 | 182 | 224 | 51 | 93 | 9.15e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48960.t1 | AT4G08900 | 78.994 | 338 | 40 | 1 | 4 | 310 | 5 | 342 | 0.0 | 538 |
| MS.gene48960.t1 | AT4G08870 | 72.093 | 344 | 62 | 1 | 1 | 310 | 1 | 344 | 0.0 | 505 |
| MS.gene48960.t1 | AT4G08870 | 67.442 | 258 | 50 | 1 | 1 | 224 | 1 | 258 | 3.59e-124 | 356 |
Find 78 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTCATCATAGTTATC+AGG | 0.221630 | 4.3:-73655075 | None:intergenic |
| ATCCCTTCTTGGAGTTCCTT+TGG | 0.249571 | 4.3:+73653871 | MS.gene48960:CDS |
| GGGAGAACTCGTGCGTGCTC+TGG | 0.274449 | 4.3:+73653829 | MS.gene48960:intron |
| CTATGTTCGGCGACTCTTGC+AGG | 0.289024 | 4.3:+73655149 | MS.gene48960:CDS |
| TCCCTTCTTGGAGTTCCTTT+GGG | 0.295664 | 4.3:+73653872 | MS.gene48960:CDS |
| GTAGCAACTTCATCCCTTCT+TGG | 0.304058 | 4.3:+73653860 | MS.gene48960:CDS |
| CAATCTCGAATTTCTTGAAT+AGG | 0.305513 | 4.3:-73654682 | None:intergenic |
| TCCGTTAAGACCCTTAGTTT+TGG | 0.364007 | 4.3:+73654963 | MS.gene48960:CDS |
| AATCTCGAATTTCTTGAATA+GGG | 0.366222 | 4.3:-73654681 | None:intergenic |
| CTCTAGGAAGTGGCGGTCTC+TGG | 0.375979 | 4.3:-73655838 | None:intergenic |
| CCCAAAACTAAGGGTCTTAA+CGG | 0.380269 | 4.3:-73654964 | None:intergenic |
| GATAACTATGATGAATTTGA+AGG | 0.396018 | 4.3:+73655078 | MS.gene48960:CDS |
| CATAATTCATCTTTCCTTCA+AGG | 0.400561 | 4.3:+73653896 | MS.gene48960:CDS |
| AACCATGAATATACCTTCTT+CGG | 0.400673 | 4.3:-73653981 | None:intergenic |
| GGAGAACTCGTGCGTGCTCT+GGG | 0.404015 | 4.3:+73653830 | MS.gene48960:CDS |
| CTTCAAGGTGATGTTGTTGC+TGG | 0.413690 | 4.3:+73656153 | MS.gene48960:CDS |
| CTCTGAGAAGCTTGGAGGAC+AGG | 0.417354 | 4.3:+73655026 | MS.gene48960:CDS |
| CTCGCATTAGAGAGGCCATT+TGG | 0.421587 | 4.3:+73653936 | MS.gene48960:CDS |
| GATTTACTTGTGCAGAAACT+AGG | 0.423851 | 4.3:+73656003 | MS.gene48960:intron |
| CTCAGAGACGGCTCTGATAA+CGG | 0.450048 | 4.3:-73655010 | None:intergenic |
| TCAGAGACGGCTCTGATAAC+GGG | 0.454860 | 4.3:-73655009 | None:intergenic |
| AATTCAATCTCTGCATGTAA+TGG | 0.461435 | 4.3:-73653553 | None:intergenic |
| AACATCCTACACAATCTTCA+AGG | 0.471336 | 4.3:+73656138 | MS.gene48960:CDS |
| AGCCAATTCTCTCACCAACT+TGG | 0.472502 | 4.3:-73656238 | None:intergenic |
| GTGATCACCACCCAAAACTA+AGG | 0.477869 | 4.3:-73654974 | None:intergenic |
| AGAGACATACCAGGTTCTCT+AGG | 0.483921 | 4.3:-73655854 | None:intergenic |
| GTGCAAATGCAGGTCCTTGA+AGG | 0.492883 | 4.3:-73653910 | None:intergenic |
| TGGTTCTATGTGAGACACTC+CGG | 0.492904 | 4.3:-73656088 | None:intergenic |
| TTCTTCCTTTGCTCGAGTCA+TGG | 0.493089 | 4.3:+73655119 | MS.gene48960:CDS |
| GTTTGTGCTACCACACCAAA+TGG | 0.495581 | 4.3:-73653951 | None:intergenic |
| ATTTACTTGTGCAGAAACTA+GGG | 0.501074 | 4.3:+73656004 | MS.gene48960:intron |
| TCATGGAGGGTAACTATGTT+CGG | 0.503666 | 4.3:+73655136 | MS.gene48960:CDS |
| CAAATTCATCATAGTTATCA+GGG | 0.516922 | 4.3:-73655074 | None:intergenic |
| GCCGTCTCTGAGAAGCTTGG+AGG | 0.521520 | 4.3:+73655021 | MS.gene48960:CDS |
| TCCTTTGCTCGAGTCATGGA+GGG | 0.526222 | 4.3:+73655123 | MS.gene48960:CDS |
| CCGCCACTTCCTAGAGAACC+TGG | 0.528589 | 4.3:+73655845 | MS.gene48960:CDS |
| TGCCAAGTTGGTGAGAGAAT+TGG | 0.530386 | 4.3:+73656236 | MS.gene48960:CDS |
| GACACTCCGGGAGCAAAAGC+AGG | 0.531124 | 4.3:-73656075 | None:intergenic |
| GGTTCTATGTGAGACACTCC+GGG | 0.532823 | 4.3:-73656087 | None:intergenic |
| ACAAACTCAACAACCGAAGA+AGG | 0.533655 | 4.3:+73653968 | MS.gene48960:CDS |
| ATTCAAGAAATTCGAGATTG+TGG | 0.534207 | 4.3:+73654685 | MS.gene48960:CDS |
| CATCGACAGTATCACGTTGT+GGG | 0.535874 | 4.3:-73656194 | None:intergenic |
| GTCCCAAAGGAACTCCAAGA+AGG | 0.543487 | 4.3:-73653874 | None:intergenic |
| CATAGATTGATGAATGTCAT+TGG | 0.546830 | 4.3:+73654718 | MS.gene48960:CDS |
| ATGCGAGGAGGTGCAAATGC+AGG | 0.550196 | 4.3:-73653920 | None:intergenic |
| TGATGTTGTTGCTGGAGATG+TGG | 0.553198 | 4.3:+73656161 | MS.gene48960:CDS |
| TCCTCCAAGCTTCTCAGAGA+CGG | 0.565146 | 4.3:-73655022 | None:intergenic |
| ATACCAGGTTCTCTAGGAAG+TGG | 0.566389 | 4.3:-73655848 | None:intergenic |
| CCATCGACAGTATCACGTTG+TGG | 0.568665 | 4.3:-73656195 | None:intergenic |
| TCGCGGAAAGAAAGACCTCC+TGG | 0.571109 | 4.3:-73656108 | None:intergenic |
| AAACTAGGGGAAGGTGTGAA+AGG | 0.572287 | 4.3:+73656018 | MS.gene48960:CDS |
| ATTCGTTCAATAACAACTGA+AGG | 0.575794 | 4.3:+73655762 | MS.gene48960:CDS |
| TCCCAAAGGAACTCCAAGAA+GGG | 0.577519 | 4.3:-73653873 | None:intergenic |
| AGAGCCGTCTCTGAGAAGCT+TGG | 0.577664 | 4.3:+73655018 | MS.gene48960:CDS |
| TGCTATGGTAGCTGCCAAGT+TGG | 0.585931 | 4.3:+73656224 | MS.gene48960:CDS |
| TGTATATATCTCAATAGATG+TGG | 0.586320 | 4.3:+73656041 | MS.gene48960:CDS |
| ACCCTCCATGACTCGAGCAA+AGG | 0.586892 | 4.3:-73655124 | None:intergenic |
| TGCACCTCCTCGCATTAGAG+AGG | 0.590940 | 4.3:+73653928 | MS.gene48960:CDS |
| TGTCAAGTTAGTGATGGAAG+AGG | 0.598921 | 4.3:+73654747 | MS.gene48960:CDS |
| TTCCTTTGCTCGAGTCATGG+AGG | 0.602924 | 4.3:+73655122 | MS.gene48960:CDS |
| ATTAGAGAGGCCATTTGGTG+TGG | 0.604583 | 4.3:+73653941 | MS.gene48960:CDS |
| AAAGATGAATTATGTCCCAA+AGG | 0.606316 | 4.3:-73653887 | None:intergenic |
| TGATCACCACCCAAAACTAA+GGG | 0.632083 | 4.3:-73654973 | None:intergenic |
| TGAATCTGTCAAGTTAGTGA+TGG | 0.632395 | 4.3:+73654741 | MS.gene48960:CDS |
| CCAGGTTCTCTAGGAAGTGG+CGG | 0.634049 | 4.3:-73655845 | None:intergenic |
| CATCACCTTGAAGATTGTGT+AGG | 0.638689 | 4.3:-73656143 | None:intergenic |
| GCACGAGTGCTAACTGATGT+TGG | 0.639119 | 4.3:+73654652 | MS.gene48960:CDS |
| TGTCGATGGAATGACTGCTA+TGG | 0.640459 | 4.3:+73656209 | MS.gene48960:CDS |
| GGAGTGTCTCACATAGAACC+AGG | 0.643921 | 4.3:+73656090 | MS.gene48960:CDS |
| GAACTCGTGCGTGCTCTGGG+AGG | 0.646286 | 4.3:+73653833 | MS.gene48960:CDS |
| CCACAACGTGATACTGTCGA+TGG | 0.650280 | 4.3:+73656195 | MS.gene48960:CDS |
| CTTGTGCAGAAACTAGGGGA+AGG | 0.662379 | 4.3:+73656009 | MS.gene48960:intron |
| CAAATGGCCTCTCTAATGCG+AGG | 0.681974 | 4.3:-73653935 | None:intergenic |
| TTTACTTGTGCAGAAACTAG+GGG | 0.686309 | 4.3:+73656005 | MS.gene48960:intron |
| ATGGCCTCTCTAATGCGAGG+AGG | 0.710992 | 4.3:-73653932 | None:intergenic |
| ATGTCAACGATAGCACGCAG+AGG | 0.745312 | 4.3:+73653527 | MS.gene48960:CDS |
| GTGTCTCACATAGAACCAGG+AGG | 0.775201 | 4.3:+73656093 | MS.gene48960:CDS |
| GTAGGATGTTAAGAACATCG+CGG | 0.825273 | 4.3:-73656125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTGTTAATTTATTTC+AGG | + | chr4.3:73655734-73655753 | MS.gene48960:intron | 10.0% |
| !! | TGAGTATCTTATATAATTAT+AGG | - | chr4.3:73654579-73654598 | None:intergenic | 15.0% |
| !! | TTGCAAAATCAAAAATTAAT+AGG | - | chr4.3:73653740-73653759 | None:intergenic | 15.0% |
| !!! | CATTATTATTTTGATTATTC+AGG | + | chr4.3:73654613-73654632 | MS.gene48960:intron | 15.0% |
| !!! | TTTTGATTTTGCAATTTATT+TGG | + | chr4.3:73653746-73653765 | MS.gene48960:intron | 15.0% |
| !! | AACAAAATATTGTCAAATAG+CGG | - | chr4.3:73654361-73654380 | None:intergenic | 20.0% |
| !! | ATTAACAAATTAAAGCATGA+AGG | - | chr4.3:73655727-73655746 | None:intergenic | 20.0% |
| !! | TATAAAATTAAGTGCATGTT+TGG | - | chr4.3:73655362-73655381 | None:intergenic | 20.0% |
| !!! | AAGCAAAATATTTTGCAAAA+TGG | + | chr4.3:73655917-73655936 | MS.gene48960:intron | 20.0% |
| !!! | ATGAAGGTATATATGTTTAT+AGG | - | chr4.3:73654826-73654845 | None:intergenic | 20.0% |
| !!! | TGAAGGTATATATGTTTATA+GGG | - | chr4.3:73654825-73654844 | None:intergenic | 20.0% |
| !!! | TTATTTTGATTATTCAGGTA+AGG | + | chr4.3:73654618-73654637 | MS.gene48960:intron | 20.0% |
| !!! | TTTGTTAATTTATTTCAGGT+TGG | + | chr4.3:73655738-73655757 | MS.gene48960:intron | 20.0% |
| ! | AAGAATCAAGAATACAAATG+TGG | + | chr4.3:73654126-73654145 | MS.gene48960:intron | 25.0% |
| ! | AATCTCGAATTTCTTGAATA+GGG | - | chr4.3:73654684-73654703 | None:intergenic | 25.0% |
| ! | ACAAAATCACAATTTAGACT+CGG | - | chr4.3:73654054-73654073 | None:intergenic | 25.0% |
| ! | ATACGAGCAACAAATTTAAT+GGG | + | chr4.3:73654492-73654511 | MS.gene48960:intron | 25.0% |
| ! | CAAATTCATCATAGTTATCA+GGG | - | chr4.3:73655077-73655096 | None:intergenic | 25.0% |
| ! | GAGTACATAAAATATGTCTA+TGG | - | chr4.3:73654192-73654211 | None:intergenic | 25.0% |
| ! | GATAACTATGATGAATTTGA+AGG | + | chr4.3:73655078-73655097 | MS.gene48960:CDS | 25.0% |
| ! | TCAAATTCATCATAGTTATC+AGG | - | chr4.3:73655078-73655097 | None:intergenic | 25.0% |
| ! | TGTATATATCTCAATAGATG+TGG | + | chr4.3:73656041-73656060 | MS.gene48960:CDS | 25.0% |
| ! | TTATTCATTGCATGAAATCT+AGG | + | chr4.3:73654096-73654115 | MS.gene48960:intron | 25.0% |
| !! | ACATATTTTATGTACTCTTG+TGG | + | chr4.3:73654195-73654214 | MS.gene48960:intron | 25.0% |
| !!! | TATTATGTTGTTTTGAGATC+CGG | + | chr4.3:73655950-73655969 | MS.gene48960:intron | 25.0% |
| AAAGATGAATTATGTCCCAA+AGG | - | chr4.3:73653890-73653909 | None:intergenic | 30.0% | |
| AACCATGAATATACCTTCTT+CGG | - | chr4.3:73653984-73654003 | None:intergenic | 30.0% | |
| AATTCAATCTCTGCATGTAA+TGG | - | chr4.3:73653556-73653575 | None:intergenic | 30.0% | |
| ACAAATGTGGATATTCTACT+TGG | + | chr4.3:73654139-73654158 | MS.gene48960:intron | 30.0% | |
| AGACATACATTAAACCGTTT+AGG | - | chr4.3:73655218-73655237 | None:intergenic | 30.0% | |
| AGACTGACATTTATAACCAA+AGG | - | chr4.3:73655673-73655692 | None:intergenic | 30.0% | |
| ATGACATATCTTACAAACCA+TGG | - | chr4.3:73655700-73655719 | None:intergenic | 30.0% | |
| ATGTCATTAAGTTATGAGAG+TGG | + | chr4.3:73655459-73655478 | MS.gene48960:intron | 30.0% | |
| ATTCAAGAAATTCGAGATTG+TGG | + | chr4.3:73654685-73654704 | MS.gene48960:CDS | 30.0% | |
| ATTCGTTCAATAACAACTGA+AGG | + | chr4.3:73655762-73655781 | MS.gene48960:CDS | 30.0% | |
| ATTTACTTGTGCAGAAACTA+GGG | + | chr4.3:73656004-73656023 | MS.gene48960:intron | 30.0% | |
| CAATATATTGAGCATGATGA+AGG | - | chr4.3:73654842-73654861 | None:intergenic | 30.0% | |
| CAATCTCGAATTTCTTGAAT+AGG | - | chr4.3:73654685-73654704 | None:intergenic | 30.0% | |
| CATAATTCATCTTTCCTTCA+AGG | + | chr4.3:73653896-73653915 | MS.gene48960:CDS | 30.0% | |
| CATACGAGCAACAAATTTAA+TGG | + | chr4.3:73654491-73654510 | MS.gene48960:intron | 30.0% | |
| CATAGATTGATGAATGTCAT+TGG | + | chr4.3:73654718-73654737 | MS.gene48960:CDS | 30.0% | |
| TAAACGGTTTAATGTATGTC+TGG | + | chr4.3:73655217-73655236 | MS.gene48960:intron | 30.0% | |
| TATTAAATAGTAGCGCTGTA+TGG | - | chr4.3:73654431-73654450 | None:intergenic | 30.0% | |
| TGAATTTGACAAAATCACGA+TGG | + | chr4.3:73655326-73655345 | MS.gene48960:intron | 30.0% | |
| TGAATTTGCCAAAATCATGA+TGG | + | chr4.3:73655248-73655267 | MS.gene48960:intron | 30.0% | |
| TGACATATCTTACAAACCAT+GGG | - | chr4.3:73655699-73655718 | None:intergenic | 30.0% | |
| TGACTGAATCTTAGTTTCTT+TGG | + | chr4.3:73653706-73653725 | MS.gene48960:intron | 30.0% | |
| ! | TGAATACTTTTACGATCTTG+AGG | - | chr4.3:73654009-73654028 | None:intergenic | 30.0% |
| !! | TGTATTTTCTGAGGATAACA+TGG | + | chr4.3:73654219-73654238 | MS.gene48960:intron | 30.0% |
| AACATCCTACACAATCTTCA+AGG | + | chr4.3:73656138-73656157 | MS.gene48960:CDS | 35.0% | |
| ATAGAAATTGCTTCTCTGCA+GGG | + | chr4.3:73653809-73653828 | MS.gene48960:intron | 35.0% | |
| CATCTACACTCAACGAAAAA+CGG | - | chr4.3:73655520-73655539 | None:intergenic | 35.0% | |
| GAGAACACTGTCAAATGATT+TGG | + | chr4.3:73654798-73654817 | MS.gene48960:intron | 35.0% | |
| GATTTACTTGTGCAGAAACT+AGG | + | chr4.3:73656003-73656022 | MS.gene48960:intron | 35.0% | |
| GCTTAAGGCAAGTCATTATT+TGG | + | chr4.3:73653661-73653680 | MS.gene48960:intron | 35.0% | |
| TAGAGAAAGAGCAAAGCTTA+AGG | + | chr4.3:73653646-73653665 | MS.gene48960:intron | 35.0% | |
| TATAGAAATTGCTTCTCTGC+AGG | + | chr4.3:73653808-73653827 | MS.gene48960:intron | 35.0% | |
| TGAATCTGTCAAGTTAGTGA+TGG | + | chr4.3:73654741-73654760 | MS.gene48960:CDS | 35.0% | |
| TGCTTCTCTTATGTCCTAAA+CGG | + | chr4.3:73655201-73655220 | MS.gene48960:intron | 35.0% | |
| TGTTATTACAGAGAACAACC+AGG | - | chr4.3:73655405-73655424 | None:intergenic | 35.0% | |
| TTTACTTGTGCAGAAACTAG+GGG | + | chr4.3:73656005-73656024 | MS.gene48960:intron | 35.0% | |
| ! | AACCGAAGAAGGTATATTCA+TGG | + | chr4.3:73653979-73653998 | MS.gene48960:intron | 35.0% |
| ! | AATTCAAGCCACCACAATTT+TGG | - | chr4.3:73655312-73655331 | None:intergenic | 35.0% |
| ! | GTATGACCACTTTAGCTTAT+AGG | - | chr4.3:73654476-73654495 | None:intergenic | 35.0% |
| ! | TCTTGTGGTTGTATTTTCTG+AGG | + | chr4.3:73654210-73654229 | MS.gene48960:intron | 35.0% |
| ! | TGTAGCTTTTGCCAAAATTG+TGG | + | chr4.3:73655298-73655317 | MS.gene48960:intron | 35.0% |
| !! | ACTTGGACTTTTGTGTTGTT+AGG | + | chr4.3:73654156-73654175 | MS.gene48960:intron | 35.0% |
| !! | ATTGGTGTTTTTCTGAACCT+TGG | + | chr4.3:73655979-73655998 | MS.gene48960:intron | 35.0% |
| !!! | GCTTTTCTGAAACATAAACC+TGG | + | chr4.3:73655384-73655403 | MS.gene48960:intron | 35.0% |
| ACAAACTCAACAACCGAAGA+AGG | + | chr4.3:73653968-73653987 | MS.gene48960:CDS | 40.0% | |
| CATCACCTTGAAGATTGTGT+AGG | - | chr4.3:73656146-73656165 | None:intergenic | 40.0% | |
| CATGTTGTCCACATTCTTTC+AGG | + | chr4.3:73654939-73654958 | MS.gene48960:intron | 40.0% | |
| CCCAAAACTAAGGGTCTTAA+CGG | - | chr4.3:73654967-73654986 | None:intergenic | 40.0% | |
| GAAAAACACCAATGAAGCAC+CGG | - | chr4.3:73655972-73655991 | None:intergenic | 40.0% | |
| GAAAGAATGTGGACAACATG+AGG | - | chr4.3:73654939-73654958 | None:intergenic | 40.0% | |
| GAATACTGATACAAGAAGCG+TGG | - | chr4.3:73654553-73654572 | None:intergenic | 40.0% | |
| GTAGGATGTTAAGAACATCG+CGG | - | chr4.3:73656128-73656147 | None:intergenic | 40.0% | |
| GTGCGCAAGCAAAAAAGTTT+GGG | + | chr4.3:73655787-73655806 | MS.gene48960:CDS | 40.0% | |
| TAAATGTCAGTCTTCACCCA+TGG | + | chr4.3:73655680-73655699 | MS.gene48960:intron | 40.0% | |
| TCACTGCCTATAAGCTAAAG+TGG | + | chr4.3:73654467-73654486 | MS.gene48960:intron | 40.0% | |
| TCATGGAGGGTAACTATGTT+CGG | + | chr4.3:73655136-73655155 | MS.gene48960:CDS | 40.0% | |
| TCGCAGATCGCATAAAATAG+CGG | + | chr4.3:73654291-73654310 | MS.gene48960:intron | 40.0% | |
| TCTGCACAAGTAAATCACCA+AGG | - | chr4.3:73655999-73656018 | None:intergenic | 40.0% | |
| TCTTCTGCTTTGCTAGAGAA+TGG | + | chr4.3:73653587-73653606 | MS.gene48960:intron | 40.0% | |
| TGATCACCACCCAAAACTAA+GGG | - | chr4.3:73654976-73654995 | None:intergenic | 40.0% | |
| TGCGCAAGCAAAAAAGTTTG+GGG | + | chr4.3:73655788-73655807 | MS.gene48960:CDS | 40.0% | |
| TGTTTGCGTGTGTATATGCT+CGG | + | chr4.3:73655888-73655907 | MS.gene48960:intron | 40.0% | |
| TTGCTGCAAGTTCTTTCCTT+TGG | + | chr4.3:73655654-73655673 | MS.gene48960:intron | 40.0% | |
| TTGTCAAATAGCGGCTACAA+CGG | - | chr4.3:73654352-73654371 | None:intergenic | 40.0% | |
| ! | AGCTTTTGCCAAAATTGTGG+TGG | + | chr4.3:73655301-73655320 | MS.gene48960:intron | 40.0% |
| ! | CTATTTTATGCGATCTGCGA+TGG | - | chr4.3:73654291-73654310 | None:intergenic | 40.0% |
| ! | TAACGGATCCTGAAAGAATG+TGG | - | chr4.3:73654950-73654969 | None:intergenic | 40.0% |
| ! | TCACAGTGCCATCATGATTT+TGG | - | chr4.3:73655259-73655278 | None:intergenic | 40.0% |
| ! | TCCGTTAAGACCCTTAGTTT+TGG | + | chr4.3:73654963-73654982 | MS.gene48960:CDS | 40.0% |
| ! | TGTCAAGTTAGTGATGGAAG+AGG | + | chr4.3:73654747-73654766 | MS.gene48960:CDS | 40.0% |
| !! | CCGTTAAGACCCTTAGTTTT+GGG | + | chr4.3:73654964-73654983 | MS.gene48960:CDS | 40.0% |
| !!! | AAGCATCGATCACACGATTT+TGG | - | chr4.3:73653613-73653632 | None:intergenic | 40.0% |
| !!! | TTAAGACCCTTAGTTTTGGG+TGG | + | chr4.3:73654967-73654986 | MS.gene48960:CDS | 40.0% |
| AGAGACATACCAGGTTCTCT+AGG | - | chr4.3:73655857-73655876 | None:intergenic | 45.0% | |
| AGCCAATTCTCTCACCAACT+TGG | - | chr4.3:73656241-73656260 | None:intergenic | 45.0% | |
| ATCCCTTCTTGGAGTTCCTT+TGG | + | chr4.3:73653871-73653890 | MS.gene48960:CDS | 45.0% | |
| CATCGACAGTATCACGTTGT+GGG | - | chr4.3:73656197-73656216 | None:intergenic | 45.0% | |
| CGTGCGCAAGCAAAAAAGTT+TGG | + | chr4.3:73655786-73655805 | MS.gene48960:CDS | 45.0% | |
| CTTCAAGGTGATGTTGTTGC+TGG | + | chr4.3:73656153-73656172 | MS.gene48960:CDS | 45.0% | |
| GTAGCAACTTCATCCCTTCT+TGG | + | chr4.3:73653860-73653879 | MS.gene48960:CDS | 45.0% | |
| GTGATCACCACCCAAAACTA+AGG | - | chr4.3:73654977-73654996 | None:intergenic | 45.0% | |
| GTTTGCGTGTGTATATGCTC+GGG | + | chr4.3:73655889-73655908 | MS.gene48960:intron | 45.0% | |
| GTTTGTGCTACCACACCAAA+TGG | - | chr4.3:73653954-73653973 | None:intergenic | 45.0% | |
| TCCCAAAGGAACTCCAAGAA+GGG | - | chr4.3:73653876-73653895 | None:intergenic | 45.0% | |
| TCCCTTCTTGGAGTTCCTTT+GGG | + | chr4.3:73653872-73653891 | MS.gene48960:CDS | 45.0% | |
| TGATGTTGTTGCTGGAGATG+TGG | + | chr4.3:73656161-73656180 | MS.gene48960:CDS | 45.0% | |
| TGTCGATGGAATGACTGCTA+TGG | + | chr4.3:73656209-73656228 | MS.gene48960:CDS | 45.0% | |
| TTCTTCCTTTGCTCGAGTCA+TGG | + | chr4.3:73655119-73655138 | MS.gene48960:CDS | 45.0% | |
| ! | AAACTAGGGGAAGGTGTGAA+AGG | + | chr4.3:73656018-73656037 | MS.gene48960:CDS | 45.0% |
| ! | ATACCAGGTTCTCTAGGAAG+TGG | - | chr4.3:73655851-73655870 | None:intergenic | 45.0% |
| ! | ATTAGAGAGGCCATTTGGTG+TGG | + | chr4.3:73653941-73653960 | MS.gene48960:CDS | 45.0% |
| ! | TGGTTCTATGTGAGACACTC+CGG | - | chr4.3:73656091-73656110 | None:intergenic | 45.0% |
| ! | TTTGAGATCCGGTGCTTCAT+TGG | + | chr4.3:73655961-73655980 | MS.gene48960:intron | 45.0% |
| !! | TGCCAAGTTGGTGAGAGAAT+TGG | + | chr4.3:73656236-73656255 | MS.gene48960:CDS | 45.0% |
| ATGTCAACGATAGCACGCAG+AGG | + | chr4.3:73653527-73653546 | MS.gene48960:CDS | 50.0% | |
| CAAATGGCCTCTCTAATGCG+AGG | - | chr4.3:73653938-73653957 | None:intergenic | 50.0% | |
| CCACAACGTGATACTGTCGA+TGG | + | chr4.3:73656195-73656214 | MS.gene48960:CDS | 50.0% | |
| CCATCGACAGTATCACGTTG+TGG | - | chr4.3:73656198-73656217 | None:intergenic | 50.0% | |
| CGCTATGGCACTATTGTGTG+TGG | - | chr4.3:73654329-73654348 | None:intergenic | 50.0% | |
| CTCGCATTAGAGAGGCCATT+TGG | + | chr4.3:73653936-73653955 | MS.gene48960:CDS | 50.0% | |
| CTTGTGCAGAAACTAGGGGA+AGG | + | chr4.3:73656009-73656028 | MS.gene48960:intron | 50.0% | |
| GAGACAGAGAGAGACATACC+AGG | - | chr4.3:73655866-73655885 | None:intergenic | 50.0% | |
| GCACGAGTGCTAACTGATGT+TGG | + | chr4.3:73654652-73654671 | MS.gene48960:CDS | 50.0% | |
| GGTTCTATGTGAGACACTCC+GGG | - | chr4.3:73656090-73656109 | None:intergenic | 50.0% | |
| GTCCCAAAGGAACTCCAAGA+AGG | - | chr4.3:73653877-73653896 | None:intergenic | 50.0% | |
| GTGCAAATGCAGGTCCTTGA+AGG | - | chr4.3:73653913-73653932 | None:intergenic | 50.0% | |
| GTGTCTCACATAGAACCAGG+AGG | + | chr4.3:73656093-73656112 | MS.gene48960:CDS | 50.0% | |
| TCCTCCAAGCTTCTCAGAGA+CGG | - | chr4.3:73655025-73655044 | None:intergenic | 50.0% | |
| TCCTTTGCTCGAGTCATGGA+GGG | + | chr4.3:73655123-73655142 | MS.gene48960:CDS | 50.0% | |
| TGCTATGGTAGCTGCCAAGT+TGG | + | chr4.3:73656224-73656243 | MS.gene48960:CDS | 50.0% | |
| TTCCTTTGCTCGAGTCATGG+AGG | + | chr4.3:73655122-73655141 | MS.gene48960:CDS | 50.0% | |
| ! | CTCAGAGACGGCTCTGATAA+CGG | - | chr4.3:73655013-73655032 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCACATAGAACC+AGG | + | chr4.3:73656090-73656109 | MS.gene48960:CDS | 50.0% |
| ! | TCAGAGACGGCTCTGATAAC+GGG | - | chr4.3:73655012-73655031 | None:intergenic | 50.0% |
| !! | CTTGATCCTGCTTTTGCTCC+CGG | + | chr4.3:73656069-73656088 | MS.gene48960:CDS | 50.0% |
| ACCCTCCATGACTCGAGCAA+AGG | - | chr4.3:73655127-73655146 | None:intergenic | 55.0% | |
| ATGGCCTCTCTAATGCGAGG+AGG | - | chr4.3:73653935-73653954 | None:intergenic | 55.0% | |
| CTATGTTCGGCGACTCTTGC+AGG | + | chr4.3:73655149-73655168 | MS.gene48960:CDS | 55.0% | |
| TCGCGGAAAGAAAGACCTCC+TGG | - | chr4.3:73656111-73656130 | None:intergenic | 55.0% | |
| TGCACCTCCTCGCATTAGAG+AGG | + | chr4.3:73653928-73653947 | MS.gene48960:CDS | 55.0% | |
| ! | AGAGCCGTCTCTGAGAAGCT+TGG | + | chr4.3:73655018-73655037 | MS.gene48960:CDS | 55.0% |
| ! | ATGCGAGGAGGTGCAAATGC+AGG | - | chr4.3:73653923-73653942 | None:intergenic | 55.0% |
| ! | CCAGGTTCTCTAGGAAGTGG+CGG | - | chr4.3:73655848-73655867 | None:intergenic | 55.0% |
| ! | CTCTGAGAAGCTTGGAGGAC+AGG | + | chr4.3:73655026-73655045 | MS.gene48960:CDS | 55.0% |
| CCGCCACTTCCTAGAGAACC+TGG | + | chr4.3:73655845-73655864 | MS.gene48960:CDS | 60.0% | |
| GACACTCCGGGAGCAAAAGC+AGG | - | chr4.3:73656078-73656097 | None:intergenic | 60.0% | |
| GGAGAACTCGTGCGTGCTCT+GGG | + | chr4.3:73653830-73653849 | MS.gene48960:CDS | 60.0% | |
| TAGCGGCTACAACGGCGCTA+TGG | - | chr4.3:73654344-73654363 | None:intergenic | 60.0% | |
| ! | CTCTAGGAAGTGGCGGTCTC+TGG | - | chr4.3:73655841-73655860 | None:intergenic | 60.0% |
| ! | GCCGTCTCTGAGAAGCTTGG+AGG | + | chr4.3:73655021-73655040 | MS.gene48960:CDS | 60.0% |
| GGGAGAACTCGTGCGTGCTC+TGG | + | chr4.3:73653829-73653848 | MS.gene48960:intron | 65.0% | |
| ! | GAACTCGTGCGTGCTCTGGG+AGG | + | chr4.3:73653833-73653852 | MS.gene48960:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 73653527 | 73656278 | 73653527 | ID=MS.gene48960 |
| chr4.3 | mRNA | 73653527 | 73656278 | 73653527 | ID=MS.gene48960.t1;Parent=MS.gene48960 |
| chr4.3 | exon | 73653527 | 73653583 | 73653527 | ID=MS.gene48960.t1.exon1;Parent=MS.gene48960.t1 |
| chr4.3 | CDS | 73653527 | 73653583 | 73653527 | ID=cds.MS.gene48960.t1;Parent=MS.gene48960.t1 |
| chr4.3 | exon | 73653830 | 73653989 | 73653830 | ID=MS.gene48960.t1.exon2;Parent=MS.gene48960.t1 |
| chr4.3 | CDS | 73653830 | 73653989 | 73653830 | ID=cds.MS.gene48960.t1;Parent=MS.gene48960.t1 |
| chr4.3 | exon | 73654635 | 73654768 | 73654635 | ID=MS.gene48960.t1.exon3;Parent=MS.gene48960.t1 |
| chr4.3 | CDS | 73654635 | 73654768 | 73654635 | ID=cds.MS.gene48960.t1;Parent=MS.gene48960.t1 |
| chr4.3 | exon | 73654961 | 73655170 | 73654961 | ID=MS.gene48960.t1.exon4;Parent=MS.gene48960.t1 |
| chr4.3 | CDS | 73654961 | 73655170 | 73654961 | ID=cds.MS.gene48960.t1;Parent=MS.gene48960.t1 |
| chr4.3 | exon | 73655756 | 73655866 | 73655756 | ID=MS.gene48960.t1.exon5;Parent=MS.gene48960.t1 |
| chr4.3 | CDS | 73655756 | 73655866 | 73655756 | ID=cds.MS.gene48960.t1;Parent=MS.gene48960.t1 |
| chr4.3 | exon | 73656018 | 73656278 | 73656018 | ID=MS.gene48960.t1.exon6;Parent=MS.gene48960.t1 |
| chr4.3 | CDS | 73656018 | 73656278 | 73656018 | ID=cds.MS.gene48960.t1;Parent=MS.gene48960.t1 |
| Gene Sequence |
| Protein sequence |
