Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059327.t1 | XP_003591984.1 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.10E-76 | 295.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059327.t1 | Q7L5D6 | 36.9 | 84 | 53 | 0 | 20 | 103 | 29 | 112 | 4.0e-11 | 69.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059327.t1 | G7I9N6 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 7.9e-77 | 295.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050762 | MS.gene059327 | 0.809144 | 2.19E-50 | -1.69E-46 |
MS.gene050763 | MS.gene059327 | 0.806149 | 9.46E-50 | -1.69E-46 |
MS.gene058638 | MS.gene059327 | 0.803323 | 3.68E-49 | -1.69E-46 |
MS.gene058639 | MS.gene059327 | 0.811418 | 7.07E-51 | -1.69E-46 |
MS.gene059327 | MS.gene060637 | 0.804517 | 2.08E-49 | -1.69E-46 |
MS.gene059327 | MS.gene061958 | 0.808253 | 3.39E-50 | -1.69E-46 |
MS.gene059327 | MS.gene072564 | 0.804581 | 2.02E-49 | -1.69E-46 |
MS.gene059327 | MS.gene072565 | 0.802805 | 4.71E-49 | -1.69E-46 |
MS.gene059327 | MS.gene27401 | 0.816068 | 6.69E-52 | -1.69E-46 |
MS.gene059327 | MS.gene30753 | 0.805497 | 1.30E-49 | -1.69E-46 |
MS.gene059327 | MS.gene47695 | 0.805898 | 1.07E-49 | -1.69E-46 |
MS.gene059327 | MS.gene48283 | 0.804357 | 2.25E-49 | -1.69E-46 |
MS.gene059327 | MS.gene52956 | 0.802566 | 5.28E-49 | -1.69E-46 |
MS.gene059327 | MS.gene83689 | 0.804827 | 1.79E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059327.t1 | MTR_1g095910 | 99.320 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 2.30e-106 | 306 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059327.t1 | AT5G63220 | 64.667 | 150 | 49 | 2 | 1 | 147 | 1 | 149 | 3.43e-64 | 199 |
MS.gene059327.t1 | AT5G63220 | 64.667 | 150 | 49 | 2 | 1 | 147 | 1 | 149 | 4.16e-64 | 199 |
MS.gene059327.t1 | AT5G63220 | 66.957 | 115 | 35 | 1 | 36 | 147 | 1 | 115 | 3.46e-49 | 159 |
Find 32 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTCAAACCTGGCACTAA+TGG | 0.301789 | 1.4:+74566961 | None:intergenic |
TTCCATTGCCACAACACCTT+TGG | 0.316717 | 1.4:-74563743 | MS.gene059327:CDS |
GGGTGGAAGTTCGAATCTTT+TGG | 0.344295 | 1.4:+74567311 | None:intergenic |
TCCATTGCCACAACACCTTT+GGG | 0.350103 | 1.4:-74563742 | MS.gene059327:CDS |
AGAGCTTGCTTTATTGTTTG+TGG | 0.399439 | 1.4:-74564143 | MS.gene059327:CDS |
TTCAGGAGCATGCATTCAAT+TGG | 0.428017 | 1.4:-74564568 | MS.gene059327:CDS |
CATTCAATTGGCTCATGGGC+AGG | 0.436008 | 1.4:-74564556 | MS.gene059327:intron |
GTGAAAGATGGAAATTGTTA+CGG | 0.444674 | 1.4:-74567004 | MS.gene059327:CDS |
GCATTAGATATCCTACATTC+AGG | 0.445091 | 1.4:-74564585 | MS.gene059327:CDS |
TCCCAAAGGTGTTGTGGCAA+TGG | 0.466290 | 1.4:+74563741 | None:intergenic |
TTGTGGAGACATTAGTGAAA+GGG | 0.467547 | 1.4:-74564126 | MS.gene059327:CDS |
TTGGAGAAAGTTGTGAAAGA+TGG | 0.477287 | 1.4:-74567016 | MS.gene059327:CDS |
CCTTATGATGATGAAACTCT+TGG | 0.480823 | 1.4:-74564097 | MS.gene059327:intron |
CCAAGAGTTTCATCATCATA+AGG | 0.481713 | 1.4:+74564097 | None:intergenic |
TAAAGCAAGCTCTGCTCCAC+AGG | 0.489032 | 1.4:+74564153 | None:intergenic |
CATGCATTCAATTGGCTCAT+GGG | 0.491039 | 1.4:-74564560 | MS.gene059327:CDS |
GCATGCATTCAATTGGCTCA+TGG | 0.494263 | 1.4:-74564561 | MS.gene059327:CDS |
TTTGGATCTCTGCCGCGCCA+TGG | 0.511420 | 1.4:+74567329 | None:intergenic |
AATCTATGAAGGATTTCCTC+GGG | 0.514937 | 1.4:-74563766 | MS.gene059327:CDS |
TGTATAAATCCATTAGTGCC+AGG | 0.523490 | 1.4:-74566970 | MS.gene059327:intron |
AAATCTATGAAGGATTTCCT+CGG | 0.529293 | 1.4:-74563767 | MS.gene059327:CDS |
CAGCAGCTTTCAGAAAACCT+TGG | 0.536573 | 1.4:-74563705 | MS.gene059327:CDS |
TTTGTGGAGACATTAGTGAA+AGG | 0.564199 | 1.4:-74564127 | MS.gene059327:CDS |
TCAACATCCCAAAGGTGTTG+TGG | 0.568924 | 1.4:+74563735 | None:intergenic |
CGAACTTCCACCCGCTGATG+AGG | 0.589573 | 1.4:-74567301 | MS.gene059327:intron |
TATTTATCTAAGGTTACCTG+TGG | 0.597462 | 1.4:-74564169 | MS.gene059327:intron |
GAATGCATGCTCCTGAATGT+AGG | 0.598781 | 1.4:+74564574 | None:intergenic |
TTGGGTACCTCATCAGCGGG+TGG | 0.656592 | 1.4:+74567294 | None:intergenic |
GCATGTCATCAACATCCCAA+AGG | 0.666796 | 1.4:+74563727 | None:intergenic |
GAAATTTCATCACCATGGCG+CGG | 0.669849 | 1.4:-74567341 | None:intergenic |
TGTTGTGGCAATGGAACCCG+AGG | 0.681305 | 1.4:+74563750 | None:intergenic |
GCAGATATGTAACTGCTCAG+AGG | 0.697282 | 1.4:-74564617 | MS.gene059327:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATATTACAAAAATCTA+GGG | + | chr1.4:74565007-74565026 | None:intergenic | 10.0% |
!! | ATTAAAACTAAATGTAAATT+TGG | + | chr1.4:74566711-74566730 | None:intergenic | 10.0% |
!! | TGCTTATAAATTATAATTAT+GGG | + | chr1.4:74565817-74565836 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTAGTCTTATT+TGG | - | chr1.4:74567106-74567125 | MS.gene059327:intron | 10.0% |
!! | AACATATACCATTAAAAAAA+GGG | - | chr1.4:74564432-74564451 | MS.gene059327:intron | 15.0% |
!! | CATAAATATTACAAAAATCT+AGG | + | chr1.4:74565008-74565027 | None:intergenic | 15.0% |
!! | GCTTATAAATTATAATTATG+GGG | + | chr1.4:74565816-74565835 | None:intergenic | 15.0% |
!! | GTGCTTATAAATTATAATTA+TGG | + | chr1.4:74565818-74565837 | None:intergenic | 15.0% |
!! | TAAAGAAGAAACAAAATTAA+TGG | + | chr1.4:74563716-74563735 | None:intergenic | 15.0% |
!! | TAAATGTAGAAAAAAAATCT+TGG | + | chr1.4:74564565-74564584 | None:intergenic | 15.0% |
!! | TAACATATACCATTAAAAAA+AGG | - | chr1.4:74564431-74564450 | MS.gene059327:intron | 15.0% |
!!! | TATTTGGAGTATATAATATT+TGG | - | chr1.4:74567122-74567141 | MS.gene059327:intron | 15.0% |
!!! | TGATTGAAAATTAATTTTGT+GGG | - | chr1.4:74563816-74563835 | MS.gene059327:intron | 15.0% |
!!! | TTGATTGAAAATTAATTTTG+TGG | - | chr1.4:74563815-74563834 | MS.gene059327:intron | 15.0% |
!!! | TTTATTTATTTTTCATGTAG+TGG | - | chr1.4:74563781-74563800 | MS.gene059327:CDS | 15.0% |
!!! | TTTTATCTTCTATTTATCTA+AGG | - | chr1.4:74566795-74566814 | MS.gene059327:intron | 15.0% |
!! | AAAAACACATAACATAAACT+TGG | + | chr1.4:74564059-74564078 | None:intergenic | 20.0% |
!! | AAACTAAAATTACATGGTTA+TGG | + | chr1.4:74565729-74565748 | None:intergenic | 20.0% |
!! | AAATAACATACGATGTATAA+CGG | + | chr1.4:74565200-74565219 | None:intergenic | 20.0% |
!! | AACTAATTTACATCTCTAAT+AGG | - | chr1.4:74566129-74566148 | MS.gene059327:intron | 20.0% |
!! | AACTACTGATAAATAATTGA+AGG | + | chr1.4:74566926-74566945 | None:intergenic | 20.0% |
!! | ACTACTGATAAATAATTGAA+GGG | + | chr1.4:74566925-74566944 | None:intergenic | 20.0% |
!! | AGCAAATAAAACAAAAACTA+AGG | - | chr1.4:74565682-74565701 | MS.gene059327:intron | 20.0% |
!! | ATAGTTTATTAGATTAACTC+AGG | - | chr1.4:74564851-74564870 | MS.gene059327:intron | 20.0% |
!!! | AAAAGTATAGAAAAGTGAAA+TGG | - | chr1.4:74566009-74566028 | MS.gene059327:intron | 20.0% |
!!! | AAATAGTTCAAACTCAATTT+TGG | + | chr1.4:74565543-74565562 | None:intergenic | 20.0% |
!!! | AATTAATGGATTGTAGATTT+TGG | + | chr1.4:74563702-74563721 | None:intergenic | 20.0% |
!!! | ATTAATGGATTGTAGATTTT+GGG | + | chr1.4:74563701-74563720 | None:intergenic | 20.0% |
!!! | TCATTATTGTTTTTGTTTCT+GGG | - | chr1.4:74563856-74563875 | MS.gene059327:intron | 20.0% |
!!! | TTATACATCGTATGTTATTT+GGG | - | chr1.4:74565200-74565219 | MS.gene059327:intron | 20.0% |
!!! | TTCATTATTGTTTTTGTTTC+TGG | - | chr1.4:74563855-74563874 | MS.gene059327:intron | 20.0% |
!!! | TTGAGGTTTTTGATTAAATA+TGG | - | chr1.4:74563911-74563930 | MS.gene059327:intron | 20.0% |
!!! | TTTTATCAAGGAGTTTAAAA+AGG | - | chr1.4:74566186-74566205 | MS.gene059327:intron | 20.0% |
! | AAAAACTCCACCAAAATTAA+TGG | + | chr1.4:74566168-74566187 | None:intergenic | 25.0% |
! | ACAGAAACAAAATTATGCTT+TGG | + | chr1.4:74565844-74565863 | None:intergenic | 25.0% |
! | AGGAAAAAAGTTACGAATTT+GGG | - | chr1.4:74564871-74564890 | MS.gene059327:intron | 25.0% |
! | ATAATTGAAGGGTAAAAGAA+AGG | + | chr1.4:74566914-74566933 | None:intergenic | 25.0% |
! | ATTGCAGAATGTTGAAAAAT+TGG | - | chr1.4:74563939-74563958 | MS.gene059327:intron | 25.0% |
! | ATTTGGATAGAAATGTCAAA+AGG | + | chr1.4:74566694-74566713 | None:intergenic | 25.0% |
! | CAATTATAAGCACCTAATAA+CGG | + | chr1.4:74566258-74566277 | None:intergenic | 25.0% |
! | CACCAAATTAAAAATCTCAT+GGG | + | chr1.4:74567045-74567064 | None:intergenic | 25.0% |
! | CGTCTAAAAAAAATCTATGA+AGG | - | chr1.4:74567197-74567216 | MS.gene059327:intron | 25.0% |
! | GTTATACATCGTATGTTATT+TGG | - | chr1.4:74565199-74565218 | MS.gene059327:intron | 25.0% |
! | GTTTCGAAACTAAAATTACA+TGG | + | chr1.4:74565735-74565754 | None:intergenic | 25.0% |
! | TCACCAAATTAAAAATCTCA+TGG | + | chr1.4:74567046-74567065 | None:intergenic | 25.0% |
!! | AAACAAAATTATGCTTTGGA+AGG | + | chr1.4:74565840-74565859 | None:intergenic | 25.0% |
!! | ATTTTTCATGTAGTGGTTTT+TGG | - | chr1.4:74563788-74563807 | MS.gene059327:intron | 25.0% |
!! | TAGATTAGTTACAAGTTAGT+TGG | + | chr1.4:74566099-74566118 | None:intergenic | 25.0% |
!! | TATACATCGTATGTTATTTG+GGG | - | chr1.4:74565201-74565220 | MS.gene059327:intron | 25.0% |
!! | TGAACAATAGTAGTTTGTAT+TGG | - | chr1.4:74564913-74564932 | MS.gene059327:intron | 25.0% |
!! | TTTCATGTAGTGTAAACTTT+TGG | - | chr1.4:74565053-74565072 | MS.gene059327:intron | 25.0% |
!!! | ATCCCATGAGATTTTTAATT+TGG | - | chr1.4:74567040-74567059 | MS.gene059327:intron | 25.0% |
!!! | ATTTATGTTCTTTTTTGAGC+TGG | - | chr1.4:74565021-74565040 | MS.gene059327:intron | 25.0% |
!!! | TAACATGACCCTTTTTTTAA+TGG | + | chr1.4:74564443-74564462 | None:intergenic | 25.0% |
!!! | TGTGGGATTGTTTTTTTTAA+GGG | + | chr1.4:74564628-74564647 | None:intergenic | 25.0% |
!!! | TTGTGGGATTGTTTTTTTTA+AGG | + | chr1.4:74564629-74564648 | None:intergenic | 25.0% |
AAAAAGTGATCAAGAGAGAA+AGG | - | chr1.4:74566642-74566661 | MS.gene059327:intron | 30.0% | |
AAATCTATGAAGGATTTCCT+CGG | - | chr1.4:74567207-74567226 | MS.gene059327:intron | 30.0% | |
AACAAGAAATTGTTCAAACC+TGG | + | chr1.4:74564025-74564044 | None:intergenic | 30.0% | |
AACTAACAATTTCTCCTACA+TGG | + | chr1.4:74566509-74566528 | None:intergenic | 30.0% | |
AATAACTTACATTGCATCAC+AGG | + | chr1.4:74566960-74566979 | None:intergenic | 30.0% | |
ACAAGTTAAGGAGCTTAAAA+TGG | - | chr1.4:74564480-74564499 | MS.gene059327:intron | 30.0% | |
ACAGTTAAAAAAGTGAAGCT+TGG | + | chr1.4:74565263-74565282 | None:intergenic | 30.0% | |
ACATCTCTAATAGGTATAGA+GGG | - | chr1.4:74566138-74566157 | MS.gene059327:intron | 30.0% | |
ATAAATTGAAACAGTGCCAA+AGG | - | chr1.4:74565938-74565957 | MS.gene059327:intron | 30.0% | |
ATGATCTAACATAACTGTAG+TGG | + | chr1.4:74565301-74565320 | None:intergenic | 30.0% | |
ATGATCTTTATTAGCCATGT+AGG | - | chr1.4:74566492-74566511 | MS.gene059327:intron | 30.0% | |
ATTTCCTTATGGACAATGTT+AGG | - | chr1.4:74565107-74565126 | MS.gene059327:intron | 30.0% | |
CAGATGAAAGGAAATAACTA+TGG | + | chr1.4:74564824-74564843 | None:intergenic | 30.0% | |
CAGGAAAAAAGTTACGAATT+TGG | - | chr1.4:74564870-74564889 | MS.gene059327:intron | 30.0% | |
CGAACTAGGTTATATAGATA+CGG | + | chr1.4:74565501-74565520 | None:intergenic | 30.0% | |
CGTTATTAGGTGCTTATAAT+TGG | - | chr1.4:74566256-74566275 | MS.gene059327:intron | 30.0% | |
GGAAAAAAGTTACGAATTTG+GGG | - | chr1.4:74564872-74564891 | MS.gene059327:intron | 30.0% | |
GTCATTTCAATCATCATCAA+GGG | + | chr1.4:74565470-74565489 | None:intergenic | 30.0% | |
GTGAAAGATGGAAATTGTTA+CGG | - | chr1.4:74563970-74563989 | MS.gene059327:intron | 30.0% | |
GTGATGTATTAGAAGATGAA+GGG | - | chr1.4:74565862-74565881 | MS.gene059327:intron | 30.0% | |
GTTGATGTTAGTATTACAAG+TGG | + | chr1.4:74565448-74565467 | None:intergenic | 30.0% | |
TAAATTGAAACAGTGCCAAA+GGG | - | chr1.4:74565939-74565958 | MS.gene059327:intron | 30.0% | |
TAATATTTACTCCTTCGTCT+GGG | + | chr1.4:74564394-74564413 | None:intergenic | 30.0% | |
TACATCTCTAATAGGTATAG+AGG | - | chr1.4:74566137-74566156 | MS.gene059327:intron | 30.0% | |
TAGAAATGTCAAAAGGATTC+AGG | + | chr1.4:74566687-74566706 | None:intergenic | 30.0% | |
TGATCTAACATAACTGTAGT+GGG | + | chr1.4:74565300-74565319 | None:intergenic | 30.0% | |
TGTGATGTATTAGAAGATGA+AGG | - | chr1.4:74565861-74565880 | MS.gene059327:intron | 30.0% | |
TTAATATTTACTCCTTCGTC+TGG | + | chr1.4:74564395-74564414 | None:intergenic | 30.0% | |
! | ACAATAGTAGTTTGTATTGG+TGG | - | chr1.4:74564916-74564935 | MS.gene059327:intron | 30.0% |
! | GTTATTCTCTTTTTGTCCTA+TGG | - | chr1.4:74566974-74566993 | MS.gene059327:CDS | 30.0% |
! | TATTTATCTAAGGTTACCTG+TGG | - | chr1.4:74566805-74566824 | MS.gene059327:intron | 30.0% |
! | TGTCATTTCAATCATCATCA+AGG | + | chr1.4:74565471-74565490 | None:intergenic | 30.0% |
! | TGTTGTTGTTGTTATTGTTG+AGG | - | chr1.4:74563894-74563913 | MS.gene059327:intron | 30.0% |
! | TTTTGTTCTCGAAAGAATGA+GGG | - | chr1.4:74564075-74564094 | MS.gene059327:intron | 30.0% |
! | TTTTTGTTCTCGAAAGAATG+AGG | - | chr1.4:74564074-74564093 | MS.gene059327:intron | 30.0% |
!! | AGAGGGTATACCATTAATTT+TGG | - | chr1.4:74566155-74566174 | MS.gene059327:intron | 30.0% |
!! | GCTAAAAGTTACTTGCTTTT+AGG | - | chr1.4:74566604-74566623 | MS.gene059327:intron | 30.0% |
!! | GTGTAAACTTTTGGAAACTT+TGG | - | chr1.4:74565062-74565081 | MS.gene059327:intron | 30.0% |
!! | TGGAGTATTTTCTTATGAAC+CGG | - | chr1.4:74565134-74565153 | MS.gene059327:intron | 30.0% |
!! | TTATAGGAGGTATTTCCTTA+TGG | - | chr1.4:74565096-74565115 | MS.gene059327:intron | 30.0% |
!!! | TTGGTGGAGTTTTTTTATCA+AGG | - | chr1.4:74566174-74566193 | MS.gene059327:intron | 30.0% |
AAAAAGTTACGAATTTGGGG+TGG | - | chr1.4:74564875-74564894 | MS.gene059327:intron | 35.0% | |
AAATTGAAACAGTGCCAAAG+GGG | - | chr1.4:74565940-74565959 | MS.gene059327:intron | 35.0% | |
AAGAATAGAGCAGTACAGTA+CGG | + | chr1.4:74564725-74564744 | None:intergenic | 35.0% | |
AAGAATGTATTTCCTACCCT+AGG | - | chr1.4:74564137-74564156 | MS.gene059327:CDS | 35.0% | |
AAGTCCTAACATTGTCCATA+AGG | + | chr1.4:74565114-74565133 | None:intergenic | 35.0% | |
AATCTATGAAGGATTTCCTC+GGG | - | chr1.4:74567208-74567227 | MS.gene059327:intron | 35.0% | |
ACAGTCACATGCAAAACAAA+TGG | - | chr1.4:74565591-74565610 | MS.gene059327:intron | 35.0% | |
ACTATGTACTTGCAGATGAA+AGG | + | chr1.4:74564836-74564855 | None:intergenic | 35.0% | |
AGAATGTATTTCCTACCCTA+GGG | - | chr1.4:74564138-74564157 | MS.gene059327:CDS | 35.0% | |
AGGTTATATAGATACGGTAG+CGG | + | chr1.4:74565495-74565514 | None:intergenic | 35.0% | |
ATCTATATAACCTAGTTCGC+TGG | - | chr1.4:74565502-74565521 | MS.gene059327:intron | 35.0% | |
CCAAGAGTTTCATCATCATA+AGG | + | chr1.4:74566880-74566899 | None:intergenic | 35.0% | |
GCATTAGATATCCTACATTC+AGG | - | chr1.4:74566389-74566408 | MS.gene059327:intron | 35.0% | |
TATGGACAATGTTAGGACTT+TGG | - | chr1.4:74565114-74565133 | MS.gene059327:intron | 35.0% | |
TGTATAAATCCATTAGTGCC+AGG | - | chr1.4:74564004-74564023 | MS.gene059327:intron | 35.0% | |
TTCATTGTTGCCTTATGACT+TGG | - | chr1.4:74566531-74566550 | MS.gene059327:intron | 35.0% | |
TTGGAGAAAGTTGTGAAAGA+TGG | - | chr1.4:74563958-74563977 | MS.gene059327:intron | 35.0% | |
TTGTGGAGACATTAGTGAAA+GGG | - | chr1.4:74566848-74566867 | MS.gene059327:intron | 35.0% | |
TTTGGTGAATGCTGAGTTAT+AGG | - | chr1.4:74565080-74565099 | MS.gene059327:intron | 35.0% | |
TTTGTGGAGACATTAGTGAA+AGG | - | chr1.4:74566847-74566866 | MS.gene059327:intron | 35.0% | |
! | AAGCTATCTGGTACATTTTC+TGG | - | chr1.4:74566561-74566580 | MS.gene059327:intron | 35.0% |
! | AGAGCTTGCTTTATTGTTTG+TGG | - | chr1.4:74566831-74566850 | MS.gene059327:intron | 35.0% |
! | AGCTATCTGGTACATTTTCT+GGG | - | chr1.4:74566562-74566581 | MS.gene059327:intron | 35.0% |
! | AGGTTTTTACAATAGACCAG+AGG | + | chr1.4:74564272-74564291 | None:intergenic | 35.0% |
! | CCTTATGATGATGAAACTCT+TGG | - | chr1.4:74566877-74566896 | MS.gene059327:intron | 35.0% |
! | GGGTATACCATTAATTTTGG+TGG | - | chr1.4:74566158-74566177 | MS.gene059327:intron | 35.0% |
! | GTTATTTGGGGCAAATTCTA+GGG | - | chr1.4:74565213-74565232 | MS.gene059327:intron | 35.0% |
! | TGTTATTTGGGGCAAATTCT+AGG | - | chr1.4:74565212-74565231 | MS.gene059327:intron | 35.0% |
! | TTTTAGCAACCTATGCTTTC+AGG | + | chr1.4:74566591-74566610 | None:intergenic | 35.0% |
!! | AAATGTTAACTTGTGCCCTT+GGG | + | chr1.4:74564605-74564624 | None:intergenic | 35.0% |
!! | AAGTGTTCTAAAGTGACCAT+AGG | + | chr1.4:74566993-74567012 | None:intergenic | 35.0% |
!! | ATGAACCGGTTTAGAGTTTT+TGG | - | chr1.4:74565148-74565167 | MS.gene059327:intron | 35.0% |
!! | GATAGCAGCTTTTAAGAATG+AGG | + | chr1.4:74567324-74567343 | None:intergenic | 35.0% |
!! | TACAATTTGACTTGTGGTCT+TGG | + | chr1.4:74565793-74565812 | None:intergenic | 35.0% |
!!! | CTTTTTAACTTATGCCCCAA+GGG | - | chr1.4:74564587-74564606 | MS.gene059327:CDS | 35.0% |
AAGTGCAAAAACACGTGTTG+AGG | - | chr1.4:74567292-74567311 | MS.gene059327:intron | 40.0% | |
AAGTGGACAGTGAATCGTAA+AGG | + | chr1.4:74565431-74565450 | None:intergenic | 40.0% | |
AGACCTGTGCAATTTATGCA+CGG | - | chr1.4:74566223-74566242 | MS.gene059327:intron | 40.0% | |
AGTGCAAAAACACGTGTTGA+GGG | - | chr1.4:74567293-74567312 | MS.gene059327:intron | 40.0% | |
AGTGGACAGTGAATCGTAAA+GGG | + | chr1.4:74565430-74565449 | None:intergenic | 40.0% | |
CCTTGGGGCATAAGTTAAAA+AGG | + | chr1.4:74564589-74564608 | None:intergenic | 40.0% | |
CTAAAGGTTAAAGGAGTTCG+AGG | - | chr1.4:74564355-74564374 | MS.gene059327:intron | 40.0% | |
CTTTGTCCAACCAAGTCATA+AGG | + | chr1.4:74566544-74566563 | None:intergenic | 40.0% | |
GGTTATATAGATACGGTAGC+GGG | + | chr1.4:74565494-74565513 | None:intergenic | 40.0% | |
GTGAATATTACCAGCGAACT+AGG | + | chr1.4:74565515-74565534 | None:intergenic | 40.0% | |
GTGATCAAGAGAGAAAGGAA+AGG | - | chr1.4:74566647-74566666 | MS.gene059327:intron | 40.0% | |
TGCCTCCAAAAACTCTAAAC+CGG | + | chr1.4:74565156-74565175 | None:intergenic | 40.0% | |
TGCTGTGAGCTAAAGGTTAA+AGG | - | chr1.4:74564346-74564365 | MS.gene059327:intron | 40.0% | |
TTGTTCAAACCTGGCACTAA+TGG | + | chr1.4:74564016-74564035 | None:intergenic | 40.0% | |
! | AAGGTGCTCTGATAATCCAT+GGG | - | chr1.4:74564688-74564707 | MS.gene059327:intron | 40.0% |
! | AGAGAAAGGAAAGGCACAAA+TGG | - | chr1.4:74566656-74566675 | MS.gene059327:intron | 40.0% |
! | CATGCATTCAATTGGCTCAT+GGG | - | chr1.4:74566414-74566433 | MS.gene059327:intron | 40.0% |
! | TTCAGGAGCATGCATTCAAT+TGG | - | chr1.4:74566406-74566425 | MS.gene059327:intron | 40.0% |
! | TTGGAGGCATGAAAAATGCA+GGG | - | chr1.4:74565167-74565186 | MS.gene059327:intron | 40.0% |
! | TTTGGAGGCATGAAAAATGC+AGG | - | chr1.4:74565166-74565185 | MS.gene059327:intron | 40.0% |
!! | AAAGGTGCTCTGATAATCCA+TGG | - | chr1.4:74564687-74564706 | MS.gene059327:intron | 40.0% |
!! | AACCGGTTTAGAGTTTTTGG+AGG | - | chr1.4:74565151-74565170 | MS.gene059327:intron | 40.0% |
!! | AATGTTAACTTGTGCCCTTG+GGG | + | chr1.4:74564604-74564623 | None:intergenic | 40.0% |
!! | ATGGGGTACAATTTGACTTG+TGG | + | chr1.4:74565799-74565818 | None:intergenic | 40.0% |
!! | CATGTTAACTTGTGCCCTAA+GGG | - | chr1.4:74564456-74564475 | MS.gene059327:intron | 40.0% |
!! | GAAATGTTAACTTGTGCCCT+TGG | + | chr1.4:74564606-74564625 | None:intergenic | 40.0% |
!! | TCATGTTAACTTGTGCCCTA+AGG | - | chr1.4:74564455-74564474 | MS.gene059327:intron | 40.0% |
!! | TTGTTGCCTTATGACTTGGT+TGG | - | chr1.4:74566535-74566554 | MS.gene059327:intron | 40.0% |
!!! | CCTTTTTAACTTATGCCCCA+AGG | - | chr1.4:74564586-74564605 | MS.gene059327:CDS | 40.0% |
AAAACCTGATGCCTGTGCTT+TGG | - | chr1.4:74564285-74564304 | MS.gene059327:intron | 45.0% | |
AAAAGGAGGTCATAGTCCCT+AGG | + | chr1.4:74564157-74564176 | None:intergenic | 45.0% | |
AAACCTGATGCCTGTGCTTT+GGG | - | chr1.4:74564286-74564305 | MS.gene059327:intron | 45.0% | |
AAAGGAGGTCATAGTCCCTA+GGG | + | chr1.4:74564156-74564175 | None:intergenic | 45.0% | |
AGAAGATGAAGGGCTTGATG+TGG | - | chr1.4:74565872-74565891 | MS.gene059327:intron | 45.0% | |
AGTGAATCGTAAAGGGGGTA+GGG | + | chr1.4:74565423-74565442 | None:intergenic | 45.0% | |
ATAGAGCAGTACAGTACGGT+AGG | + | chr1.4:74564721-74564740 | None:intergenic | 45.0% | |
ATGGCAGCAGATTGGATGAA+TGG | + | chr1.4:74565397-74565416 | None:intergenic | 45.0% | |
CAGCAGATTGGATGAATGGT+GGG | + | chr1.4:74565393-74565412 | None:intergenic | 45.0% | |
CAGCAGCTTTCAGAAAACCT+TGG | - | chr1.4:74567269-74567288 | MS.gene059327:intron | 45.0% | |
CGGTAGAAAGAGCCGTTATT+AGG | - | chr1.4:74566243-74566262 | MS.gene059327:intron | 45.0% | |
CTACCGTGCATAAATTGCAC+AGG | + | chr1.4:74566229-74566248 | None:intergenic | 45.0% | |
CTTACTGAGCGAGTACATCA+CGG | + | chr1.4:74564239-74564258 | None:intergenic | 45.0% | |
CTTGGTTGGACAAAGCTATC+TGG | - | chr1.4:74566549-74566568 | MS.gene059327:intron | 45.0% | |
GAATGCATGCTCCTGAATGT+AGG | + | chr1.4:74566403-74566422 | None:intergenic | 45.0% | |
GCAGATATGTAACTGCTCAG+AGG | - | chr1.4:74566357-74566376 | MS.gene059327:intron | 45.0% | |
GCATGTCATCAACATCCCAA+AGG | + | chr1.4:74567250-74567269 | None:intergenic | 45.0% | |
GGTGAATGCTGAGTTATAGG+AGG | - | chr1.4:74565083-74565102 | MS.gene059327:intron | 45.0% | |
GTGGACAGTGAATCGTAAAG+GGG | + | chr1.4:74565429-74565448 | None:intergenic | 45.0% | |
TACTCGCTCAGTAAGCACTT+GGG | - | chr1.4:74564244-74564263 | MS.gene059327:intron | 45.0% | |
TAGAGCAGTACAGTACGGTA+GGG | + | chr1.4:74564720-74564739 | None:intergenic | 45.0% | |
TATCTTTCCTCTCTCCCCTT+TGG | + | chr1.4:74565957-74565976 | None:intergenic | 45.0% | |
TCCATTGCCACAACACCTTT+GGG | - | chr1.4:74567232-74567251 | MS.gene059327:intron | 45.0% | |
TGGACAGTGAATCGTAAAGG+GGG | + | chr1.4:74565428-74565447 | None:intergenic | 45.0% | |
TTAAAGGAGTTCGAGGTCGT+GGG | - | chr1.4:74564362-74564381 | MS.gene059327:intron | 45.0% | |
TTCCATTGCCACAACACCTT+TGG | - | chr1.4:74567231-74567250 | MS.gene059327:intron | 45.0% | |
TTCTCGAAAGAATGAGGGAG+TGG | - | chr1.4:74564080-74564099 | MS.gene059327:intron | 45.0% | |
! | GAAAGGAAAGGCACAAATGG+AGG | - | chr1.4:74566659-74566678 | MS.gene059327:intron | 45.0% |
! | GAGTGGTGGCATAGGATTTT+TGG | - | chr1.4:74564097-74564116 | MS.gene059327:intron | 45.0% |
! | GCATGCATTCAATTGGCTCA+TGG | - | chr1.4:74566413-74566432 | MS.gene059327:intron | 45.0% |
! | GGGTGGAAGTTCGAATCTTT+TGG | + | chr1.4:74563666-74563685 | None:intergenic | 45.0% |
! | TTGGTTGGAGGTGTAGTAGA+TGG | + | chr1.4:74565367-74565386 | None:intergenic | 45.0% |
!! | ATGAATGGTGGGTCTTTGGT+TGG | + | chr1.4:74565382-74565401 | None:intergenic | 45.0% |
!! | ATTTTGGGTACCTCATCAGC+GGG | + | chr1.4:74563686-74563705 | None:intergenic | 45.0% |
!! | CACGTGTTTTTGCACTTCCA+AGG | + | chr1.4:74567289-74567308 | None:intergenic | 45.0% |
!! | CTCCTTAACTTGTGCCCTTA+GGG | + | chr1.4:74564473-74564492 | None:intergenic | 45.0% |
!! | CTTGGAGGGAGCACTATAAA+AGG | + | chr1.4:74564174-74564193 | None:intergenic | 45.0% |
!! | GATTTTGGGTACCTCATCAG+CGG | + | chr1.4:74563687-74563706 | None:intergenic | 45.0% |
!! | TCAACATCCCAAAGGTGTTG+TGG | + | chr1.4:74567242-74567261 | None:intergenic | 45.0% |
!! | TTGGATGAATGGTGGGTCTT+TGG | + | chr1.4:74565386-74565405 | None:intergenic | 45.0% |
!!! | TTTCTGGGTTTTGGAGCGAA+GGG | + | chr1.4:74565335-74565354 | None:intergenic | 45.0% |
!!! | TAATTACTAATAAATTTTAA+TGG | - | chr1.4:74567169-74567188 | MS.gene059327:intron | 5.0% |
AACCTGATGCCTGTGCTTTG+GGG | - | chr1.4:74564287-74564306 | MS.gene059327:intron | 50.0% | |
ACCCACCAAAAGCTCTTGGA+GGG | + | chr1.4:74564188-74564207 | None:intergenic | 50.0% | |
AGATGAAGGGCTTGATGTGG+AGG | - | chr1.4:74565875-74565894 | MS.gene059327:intron | 50.0% | |
AGATGGTCACGACGGTTTCT+GGG | + | chr1.4:74565350-74565369 | None:intergenic | 50.0% | |
CAGTGAATCGTAAAGGGGGT+AGG | + | chr1.4:74565424-74565443 | None:intergenic | 50.0% | |
GAGATCCCACGATACTATGG+GGG | - | chr1.4:74564309-74564328 | MS.gene059327:intron | 50.0% | |
GCAGCAGATTGGATGAATGG+TGG | + | chr1.4:74565394-74565413 | None:intergenic | 50.0% | |
GCTCAACTGCTGTGAGCTAA+AGG | - | chr1.4:74564339-74564358 | MS.gene059327:intron | 50.0% | |
GGAGATCCCACGATACTATG+GGG | - | chr1.4:74564308-74564327 | MS.gene059327:intron | 50.0% | |
GGGAGATCCCACGATACTAT+GGG | - | chr1.4:74564307-74564326 | MS.gene059327:intron | 50.0% | |
GGGGCTGTGTACAGTATTGT+GGG | + | chr1.4:74564645-74564664 | None:intergenic | 50.0% | |
GGTGTAGTAGATGGTCACGA+CGG | + | chr1.4:74565358-74565377 | None:intergenic | 50.0% | |
GTACTCGCTCAGTAAGCACT+TGG | - | chr1.4:74564243-74564262 | MS.gene059327:intron | 50.0% | |
GTGAATCGTAAAGGGGGTAG+GGG | + | chr1.4:74565422-74565441 | None:intergenic | 50.0% | |
GTTAAAGGAGTTCGAGGTCG+TGG | - | chr1.4:74564361-74564380 | MS.gene059327:intron | 50.0% | |
TAAAGCAAGCTCTGCTCCAC+AGG | + | chr1.4:74566824-74566843 | None:intergenic | 50.0% | |
TAGATGGTCACGACGGTTTC+TGG | + | chr1.4:74565351-74565370 | None:intergenic | 50.0% | |
TCGAAAGAATGAGGGAGTGG+TGG | - | chr1.4:74564083-74564102 | MS.gene059327:intron | 50.0% | |
! | ATCAGAGCACCTTTGCCCTT+CGG | + | chr1.4:74564681-74564700 | None:intergenic | 50.0% |
! | CATTCAATTGGCTCATGGGC+AGG | - | chr1.4:74566418-74566437 | MS.gene059327:intron | 50.0% |
! | CTAGGGTGCACAAGGTGTTT+AGG | - | chr1.4:74565230-74565249 | MS.gene059327:intron | 50.0% |
! | GTGGGTTAAAACCCAGACGA+AGG | - | chr1.4:74564380-74564399 | MS.gene059327:intron | 50.0% |
! | TCCCTCCAAGAGCTTTTGGT+GGG | - | chr1.4:74564184-74564203 | MS.gene059327:intron | 50.0% |
! | TCTGGGACACCTGAAAGCAT+AGG | - | chr1.4:74566579-74566598 | MS.gene059327:intron | 50.0% |
! | TGCCCTAAGGGCACAAGTTA+AGG | - | chr1.4:74564468-74564487 | MS.gene059327:intron | 50.0% |
! | TTTGGTGGGTGCCTTCATGT+GGG | - | chr1.4:74564198-74564217 | MS.gene059327:intron | 50.0% |
!! | AATGGTGGGTCTTTGGTTGG+AGG | + | chr1.4:74565379-74565398 | None:intergenic | 50.0% |
!! | GCTCCTTAACTTGTGCCCTT+AGG | + | chr1.4:74564474-74564493 | None:intergenic | 50.0% |
!! | GGAGGGAGCACTATAAAAGG+AGG | + | chr1.4:74564171-74564190 | None:intergenic | 50.0% |
!! | GGCAAATTCTAGGGTGCACA+AGG | - | chr1.4:74565222-74565241 | MS.gene059327:intron | 50.0% |
!! | TCACGACGGTTTCTGGGTTT+TGG | + | chr1.4:74565344-74565363 | None:intergenic | 50.0% |
!! | TCCCAAAGGTGTTGTGGCAA+TGG | + | chr1.4:74567236-74567255 | None:intergenic | 50.0% |
!! | TTTTGGTGGGTGCCTTCATG+TGG | - | chr1.4:74564197-74564216 | MS.gene059327:intron | 50.0% |
!!! | GTTTCTGGGTTTTGGAGCGA+AGG | + | chr1.4:74565336-74565355 | None:intergenic | 50.0% |
!!! | TTCTGGGTTTTGGAGCGAAG+GGG | + | chr1.4:74565334-74565353 | None:intergenic | 50.0% |
AACAGTGCCAAAGGGGAGAG+AGG | - | chr1.4:74565947-74565966 | MS.gene059327:intron | 55.0% | |
ACCCAACCCCCATAGTATCG+TGG | + | chr1.4:74564318-74564337 | None:intergenic | 55.0% | |
AGGCACCCACCAAAAGCTCT+TGG | + | chr1.4:74564192-74564211 | None:intergenic | 55.0% | |
AGTAAGCACTTGGGCTCCTC+TGG | - | chr1.4:74564253-74564272 | MS.gene059327:intron | 55.0% | |
CACCCACCAAAAGCTCTTGG+AGG | + | chr1.4:74564189-74564208 | None:intergenic | 55.0% | |
CCCAACCCCCATAGTATCGT+GGG | + | chr1.4:74564317-74564336 | None:intergenic | 55.0% | |
CCCACGATACTATGGGGGTT+GGG | - | chr1.4:74564314-74564333 | MS.gene059327:intron | 55.0% | |
CCTTCATGTGGGCAGACATC+CGG | - | chr1.4:74564209-74564228 | MS.gene059327:intron | 55.0% | |
CTTGATGTGGAGGTGGAGGA+AGG | - | chr1.4:74565885-74565904 | MS.gene059327:intron | 55.0% | |
GAATGAGGGAGTGGTGGCAT+AGG | - | chr1.4:74564089-74564108 | MS.gene059327:intron | 55.0% | |
GAGGTCATAGTCCCTAGGGT+AGG | + | chr1.4:74564152-74564171 | None:intergenic | 55.0% | |
GGGGAGATCCCACGATACTA+TGG | - | chr1.4:74564306-74564325 | MS.gene059327:intron | 55.0% | |
GGGGGCTGTGTACAGTATTG+TGG | + | chr1.4:74564646-74564665 | None:intergenic | 55.0% | |
GGTGGTCACTCAGAGTCAGA+AGG | - | chr1.4:74564934-74564953 | MS.gene059327:intron | 55.0% | |
GTGGAGGTGGAGGAAGGAAA+CGG | - | chr1.4:74565891-74565910 | MS.gene059327:intron | 55.0% | |
TACGGTAGGGTCAGTACCCA+TGG | + | chr1.4:74564707-74564726 | None:intergenic | 55.0% | |
TCCCACGATACTATGGGGGT+TGG | - | chr1.4:74564313-74564332 | MS.gene059327:intron | 55.0% | |
TGAAGGGCTTGATGTGGAGG+TGG | - | chr1.4:74565878-74565897 | MS.gene059327:intron | 55.0% | |
TGTTGTGGCAATGGAACCCG+AGG | + | chr1.4:74567227-74567246 | None:intergenic | 55.0% | |
! | CTCCCTCCAAGAGCTTTTGG+TGG | - | chr1.4:74564183-74564202 | MS.gene059327:intron | 55.0% |
! | GTGCTCCCTCCAAGAGCTTT+TGG | - | chr1.4:74564180-74564199 | MS.gene059327:intron | 55.0% |
! | TAGGGGTGATGGCAGCAGAT+TGG | + | chr1.4:74565405-74565424 | None:intergenic | 55.0% |
AGGGCTTGATGTGGAGGTGG+AGG | - | chr1.4:74565881-74565900 | MS.gene059327:intron | 60.0% | |
CATGTGGGCAGACATCCGGT+GGG | - | chr1.4:74564213-74564232 | MS.gene059327:intron | 60.0% | |
CCGGATGTCTGCCCACATGA+AGG | + | chr1.4:74564212-74564231 | None:intergenic | 60.0% | |
CGAACTTCCACCCGCTGATG+AGG | - | chr1.4:74563673-74563692 | MS.gene059327:CDS | 60.0% | |
CGTAAAGGGGGTAGGGGTGA+TGG | + | chr1.4:74565416-74565435 | None:intergenic | 60.0% | |
CTCCCCAAAGCACAGGCATC+AGG | + | chr1.4:74564292-74564311 | None:intergenic | 60.0% | |
GAGGTGGAGGAAGGAAACGG+CGG | - | chr1.4:74565894-74565913 | MS.gene059327:intron | 60.0% | |
GTGGGATCTCCCCAAAGCAC+AGG | + | chr1.4:74564299-74564318 | None:intergenic | 60.0% | |
TCATGTGGGCAGACATCCGG+TGG | - | chr1.4:74564212-74564231 | MS.gene059327:intron | 60.0% | |
TTGGGTACCTCATCAGCGGG+TGG | + | chr1.4:74563683-74563702 | None:intergenic | 60.0% | |
ACACAGCCCCCCAAGCGTCA+AGG | - | chr1.4:74564655-74564674 | MS.gene059327:intron | 65.0% | |
CCCCAAGCGTCAAGGCCGAA+GGG | - | chr1.4:74564663-74564682 | MS.gene059327:intron | 65.0% | |
CCCTTCGGCCTTGACGCTTG+GGG | + | chr1.4:74564666-74564685 | None:intergenic | 65.0% | |
CCTTCGGCCTTGACGCTTGG+GGG | + | chr1.4:74564665-74564684 | None:intergenic | 65.0% | |
CTTCGGCCTTGACGCTTGGG+GGG | + | chr1.4:74564664-74564683 | None:intergenic | 65.0% | |
GCCCTTCGGCCTTGACGCTT+GGG | + | chr1.4:74564667-74564686 | None:intergenic | 65.0% | |
GCGAGTACATCACGGCCCAC+CGG | + | chr1.4:74564231-74564250 | None:intergenic | 65.0% | |
GCGTCAAGGCCGAAGGGCAA+AGG | - | chr1.4:74564669-74564688 | MS.gene059327:intron | 65.0% | |
TGCCCTTCGGCCTTGACGCT+TGG | + | chr1.4:74564668-74564687 | None:intergenic | 65.0% | |
CCCCCAAGCGTCAAGGCCGA+AGG | - | chr1.4:74564662-74564681 | MS.gene059327:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 74563647 | 74567349 | 74563647 | ID=MS.gene059327 |
chr1.4 | mRNA | 74563647 | 74567349 | 74563647 | ID=MS.gene059327.t1;Parent=MS.gene059327 |
chr1.4 | exon | 74567302 | 74567349 | 74567302 | ID=MS.gene059327.t1.exon1;Parent=MS.gene059327.t1 |
chr1.4 | CDS | 74567302 | 74567349 | 74567302 | ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1 |
chr1.4 | exon | 74566971 | 74567050 | 74566971 | ID=MS.gene059327.t1.exon2;Parent=MS.gene059327.t1 |
chr1.4 | CDS | 74566971 | 74567050 | 74566971 | ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1 |
chr1.4 | exon | 74564557 | 74564635 | 74564557 | ID=MS.gene059327.t1.exon3;Parent=MS.gene059327.t1 |
chr1.4 | CDS | 74564557 | 74564635 | 74564557 | ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1 |
chr1.4 | exon | 74564098 | 74564179 | 74564098 | ID=MS.gene059327.t1.exon4;Parent=MS.gene059327.t1 |
chr1.4 | CDS | 74564098 | 74564179 | 74564098 | ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1 |
chr1.4 | exon | 74563647 | 74563801 | 74563647 | ID=MS.gene059327.t1.exon5;Parent=MS.gene059327.t1 |
chr1.4 | CDS | 74563647 | 74563801 | 74563647 | ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1 |
Gene Sequence |
Protein sequence |