AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059327


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059327.t1 MTR_1g095910 99.320 147 1 0 1 147 1 147 2.30e-106 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059327.t1 AT5G63220 64.667 150 49 2 1 147 1 149 3.43e-64 199
MS.gene059327.t1 AT5G63220 64.667 150 49 2 1 147 1 149 4.16e-64 199
MS.gene059327.t1 AT5G63220 66.957 115 35 1 36 147 1 115 3.46e-49 159

Find 32 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCAAACCTGGCACTAA+TGG 0.301789 1.4:+74566961 None:intergenic
TTCCATTGCCACAACACCTT+TGG 0.316717 1.4:-74563743 MS.gene059327:CDS
GGGTGGAAGTTCGAATCTTT+TGG 0.344295 1.4:+74567311 None:intergenic
TCCATTGCCACAACACCTTT+GGG 0.350103 1.4:-74563742 MS.gene059327:CDS
AGAGCTTGCTTTATTGTTTG+TGG 0.399439 1.4:-74564143 MS.gene059327:CDS
TTCAGGAGCATGCATTCAAT+TGG 0.428017 1.4:-74564568 MS.gene059327:CDS
CATTCAATTGGCTCATGGGC+AGG 0.436008 1.4:-74564556 MS.gene059327:intron
GTGAAAGATGGAAATTGTTA+CGG 0.444674 1.4:-74567004 MS.gene059327:CDS
GCATTAGATATCCTACATTC+AGG 0.445091 1.4:-74564585 MS.gene059327:CDS
TCCCAAAGGTGTTGTGGCAA+TGG 0.466290 1.4:+74563741 None:intergenic
TTGTGGAGACATTAGTGAAA+GGG 0.467547 1.4:-74564126 MS.gene059327:CDS
TTGGAGAAAGTTGTGAAAGA+TGG 0.477287 1.4:-74567016 MS.gene059327:CDS
CCTTATGATGATGAAACTCT+TGG 0.480823 1.4:-74564097 MS.gene059327:intron
CCAAGAGTTTCATCATCATA+AGG 0.481713 1.4:+74564097 None:intergenic
TAAAGCAAGCTCTGCTCCAC+AGG 0.489032 1.4:+74564153 None:intergenic
CATGCATTCAATTGGCTCAT+GGG 0.491039 1.4:-74564560 MS.gene059327:CDS
GCATGCATTCAATTGGCTCA+TGG 0.494263 1.4:-74564561 MS.gene059327:CDS
TTTGGATCTCTGCCGCGCCA+TGG 0.511420 1.4:+74567329 None:intergenic
AATCTATGAAGGATTTCCTC+GGG 0.514937 1.4:-74563766 MS.gene059327:CDS
TGTATAAATCCATTAGTGCC+AGG 0.523490 1.4:-74566970 MS.gene059327:intron
AAATCTATGAAGGATTTCCT+CGG 0.529293 1.4:-74563767 MS.gene059327:CDS
CAGCAGCTTTCAGAAAACCT+TGG 0.536573 1.4:-74563705 MS.gene059327:CDS
TTTGTGGAGACATTAGTGAA+AGG 0.564199 1.4:-74564127 MS.gene059327:CDS
TCAACATCCCAAAGGTGTTG+TGG 0.568924 1.4:+74563735 None:intergenic
CGAACTTCCACCCGCTGATG+AGG 0.589573 1.4:-74567301 MS.gene059327:intron
TATTTATCTAAGGTTACCTG+TGG 0.597462 1.4:-74564169 MS.gene059327:intron
GAATGCATGCTCCTGAATGT+AGG 0.598781 1.4:+74564574 None:intergenic
TTGGGTACCTCATCAGCGGG+TGG 0.656592 1.4:+74567294 None:intergenic
GCATGTCATCAACATCCCAA+AGG 0.666796 1.4:+74563727 None:intergenic
GAAATTTCATCACCATGGCG+CGG 0.669849 1.4:-74567341 None:intergenic
TGTTGTGGCAATGGAACCCG+AGG 0.681305 1.4:+74563750 None:intergenic
GCAGATATGTAACTGCTCAG+AGG 0.697282 1.4:-74564617 MS.gene059327:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATTACAAAAATCTA+GGG + chr1.4:74565007-74565026 None:intergenic 10.0%
!! ATTAAAACTAAATGTAAATT+TGG + chr1.4:74566711-74566730 None:intergenic 10.0%
!! TGCTTATAAATTATAATTAT+GGG + chr1.4:74565817-74565836 None:intergenic 10.0%
!!! TTTTTTTTTTTAGTCTTATT+TGG - chr1.4:74567106-74567125 MS.gene059327:intron 10.0%
!! AACATATACCATTAAAAAAA+GGG - chr1.4:74564432-74564451 MS.gene059327:intron 15.0%
!! CATAAATATTACAAAAATCT+AGG + chr1.4:74565008-74565027 None:intergenic 15.0%
!! GCTTATAAATTATAATTATG+GGG + chr1.4:74565816-74565835 None:intergenic 15.0%
!! GTGCTTATAAATTATAATTA+TGG + chr1.4:74565818-74565837 None:intergenic 15.0%
!! TAAAGAAGAAACAAAATTAA+TGG + chr1.4:74563716-74563735 None:intergenic 15.0%
!! TAAATGTAGAAAAAAAATCT+TGG + chr1.4:74564565-74564584 None:intergenic 15.0%
!! TAACATATACCATTAAAAAA+AGG - chr1.4:74564431-74564450 MS.gene059327:intron 15.0%
!!! TATTTGGAGTATATAATATT+TGG - chr1.4:74567122-74567141 MS.gene059327:intron 15.0%
!!! TGATTGAAAATTAATTTTGT+GGG - chr1.4:74563816-74563835 MS.gene059327:intron 15.0%
!!! TTGATTGAAAATTAATTTTG+TGG - chr1.4:74563815-74563834 MS.gene059327:intron 15.0%
!!! TTTATTTATTTTTCATGTAG+TGG - chr1.4:74563781-74563800 MS.gene059327:CDS 15.0%
!!! TTTTATCTTCTATTTATCTA+AGG - chr1.4:74566795-74566814 MS.gene059327:intron 15.0%
!! AAAAACACATAACATAAACT+TGG + chr1.4:74564059-74564078 None:intergenic 20.0%
!! AAACTAAAATTACATGGTTA+TGG + chr1.4:74565729-74565748 None:intergenic 20.0%
!! AAATAACATACGATGTATAA+CGG + chr1.4:74565200-74565219 None:intergenic 20.0%
!! AACTAATTTACATCTCTAAT+AGG - chr1.4:74566129-74566148 MS.gene059327:intron 20.0%
!! AACTACTGATAAATAATTGA+AGG + chr1.4:74566926-74566945 None:intergenic 20.0%
!! ACTACTGATAAATAATTGAA+GGG + chr1.4:74566925-74566944 None:intergenic 20.0%
!! AGCAAATAAAACAAAAACTA+AGG - chr1.4:74565682-74565701 MS.gene059327:intron 20.0%
!! ATAGTTTATTAGATTAACTC+AGG - chr1.4:74564851-74564870 MS.gene059327:intron 20.0%
!!! AAAAGTATAGAAAAGTGAAA+TGG - chr1.4:74566009-74566028 MS.gene059327:intron 20.0%
!!! AAATAGTTCAAACTCAATTT+TGG + chr1.4:74565543-74565562 None:intergenic 20.0%
!!! AATTAATGGATTGTAGATTT+TGG + chr1.4:74563702-74563721 None:intergenic 20.0%
!!! ATTAATGGATTGTAGATTTT+GGG + chr1.4:74563701-74563720 None:intergenic 20.0%
!!! TCATTATTGTTTTTGTTTCT+GGG - chr1.4:74563856-74563875 MS.gene059327:intron 20.0%
!!! TTATACATCGTATGTTATTT+GGG - chr1.4:74565200-74565219 MS.gene059327:intron 20.0%
!!! TTCATTATTGTTTTTGTTTC+TGG - chr1.4:74563855-74563874 MS.gene059327:intron 20.0%
!!! TTGAGGTTTTTGATTAAATA+TGG - chr1.4:74563911-74563930 MS.gene059327:intron 20.0%
!!! TTTTATCAAGGAGTTTAAAA+AGG - chr1.4:74566186-74566205 MS.gene059327:intron 20.0%
! AAAAACTCCACCAAAATTAA+TGG + chr1.4:74566168-74566187 None:intergenic 25.0%
! ACAGAAACAAAATTATGCTT+TGG + chr1.4:74565844-74565863 None:intergenic 25.0%
! AGGAAAAAAGTTACGAATTT+GGG - chr1.4:74564871-74564890 MS.gene059327:intron 25.0%
! ATAATTGAAGGGTAAAAGAA+AGG + chr1.4:74566914-74566933 None:intergenic 25.0%
! ATTGCAGAATGTTGAAAAAT+TGG - chr1.4:74563939-74563958 MS.gene059327:intron 25.0%
! ATTTGGATAGAAATGTCAAA+AGG + chr1.4:74566694-74566713 None:intergenic 25.0%
! CAATTATAAGCACCTAATAA+CGG + chr1.4:74566258-74566277 None:intergenic 25.0%
! CACCAAATTAAAAATCTCAT+GGG + chr1.4:74567045-74567064 None:intergenic 25.0%
! CGTCTAAAAAAAATCTATGA+AGG - chr1.4:74567197-74567216 MS.gene059327:intron 25.0%
! GTTATACATCGTATGTTATT+TGG - chr1.4:74565199-74565218 MS.gene059327:intron 25.0%
! GTTTCGAAACTAAAATTACA+TGG + chr1.4:74565735-74565754 None:intergenic 25.0%
! TCACCAAATTAAAAATCTCA+TGG + chr1.4:74567046-74567065 None:intergenic 25.0%
!! AAACAAAATTATGCTTTGGA+AGG + chr1.4:74565840-74565859 None:intergenic 25.0%
!! ATTTTTCATGTAGTGGTTTT+TGG - chr1.4:74563788-74563807 MS.gene059327:intron 25.0%
!! TAGATTAGTTACAAGTTAGT+TGG + chr1.4:74566099-74566118 None:intergenic 25.0%
!! TATACATCGTATGTTATTTG+GGG - chr1.4:74565201-74565220 MS.gene059327:intron 25.0%
!! TGAACAATAGTAGTTTGTAT+TGG - chr1.4:74564913-74564932 MS.gene059327:intron 25.0%
!! TTTCATGTAGTGTAAACTTT+TGG - chr1.4:74565053-74565072 MS.gene059327:intron 25.0%
!!! ATCCCATGAGATTTTTAATT+TGG - chr1.4:74567040-74567059 MS.gene059327:intron 25.0%
!!! ATTTATGTTCTTTTTTGAGC+TGG - chr1.4:74565021-74565040 MS.gene059327:intron 25.0%
!!! TAACATGACCCTTTTTTTAA+TGG + chr1.4:74564443-74564462 None:intergenic 25.0%
!!! TGTGGGATTGTTTTTTTTAA+GGG + chr1.4:74564628-74564647 None:intergenic 25.0%
!!! TTGTGGGATTGTTTTTTTTA+AGG + chr1.4:74564629-74564648 None:intergenic 25.0%
AAAAAGTGATCAAGAGAGAA+AGG - chr1.4:74566642-74566661 MS.gene059327:intron 30.0%
AAATCTATGAAGGATTTCCT+CGG - chr1.4:74567207-74567226 MS.gene059327:intron 30.0%
AACAAGAAATTGTTCAAACC+TGG + chr1.4:74564025-74564044 None:intergenic 30.0%
AACTAACAATTTCTCCTACA+TGG + chr1.4:74566509-74566528 None:intergenic 30.0%
AATAACTTACATTGCATCAC+AGG + chr1.4:74566960-74566979 None:intergenic 30.0%
ACAAGTTAAGGAGCTTAAAA+TGG - chr1.4:74564480-74564499 MS.gene059327:intron 30.0%
ACAGTTAAAAAAGTGAAGCT+TGG + chr1.4:74565263-74565282 None:intergenic 30.0%
ACATCTCTAATAGGTATAGA+GGG - chr1.4:74566138-74566157 MS.gene059327:intron 30.0%
ATAAATTGAAACAGTGCCAA+AGG - chr1.4:74565938-74565957 MS.gene059327:intron 30.0%
ATGATCTAACATAACTGTAG+TGG + chr1.4:74565301-74565320 None:intergenic 30.0%
ATGATCTTTATTAGCCATGT+AGG - chr1.4:74566492-74566511 MS.gene059327:intron 30.0%
ATTTCCTTATGGACAATGTT+AGG - chr1.4:74565107-74565126 MS.gene059327:intron 30.0%
CAGATGAAAGGAAATAACTA+TGG + chr1.4:74564824-74564843 None:intergenic 30.0%
CAGGAAAAAAGTTACGAATT+TGG - chr1.4:74564870-74564889 MS.gene059327:intron 30.0%
CGAACTAGGTTATATAGATA+CGG + chr1.4:74565501-74565520 None:intergenic 30.0%
CGTTATTAGGTGCTTATAAT+TGG - chr1.4:74566256-74566275 MS.gene059327:intron 30.0%
GGAAAAAAGTTACGAATTTG+GGG - chr1.4:74564872-74564891 MS.gene059327:intron 30.0%
GTCATTTCAATCATCATCAA+GGG + chr1.4:74565470-74565489 None:intergenic 30.0%
GTGAAAGATGGAAATTGTTA+CGG - chr1.4:74563970-74563989 MS.gene059327:intron 30.0%
GTGATGTATTAGAAGATGAA+GGG - chr1.4:74565862-74565881 MS.gene059327:intron 30.0%
GTTGATGTTAGTATTACAAG+TGG + chr1.4:74565448-74565467 None:intergenic 30.0%
TAAATTGAAACAGTGCCAAA+GGG - chr1.4:74565939-74565958 MS.gene059327:intron 30.0%
TAATATTTACTCCTTCGTCT+GGG + chr1.4:74564394-74564413 None:intergenic 30.0%
TACATCTCTAATAGGTATAG+AGG - chr1.4:74566137-74566156 MS.gene059327:intron 30.0%
TAGAAATGTCAAAAGGATTC+AGG + chr1.4:74566687-74566706 None:intergenic 30.0%
TGATCTAACATAACTGTAGT+GGG + chr1.4:74565300-74565319 None:intergenic 30.0%
TGTGATGTATTAGAAGATGA+AGG - chr1.4:74565861-74565880 MS.gene059327:intron 30.0%
TTAATATTTACTCCTTCGTC+TGG + chr1.4:74564395-74564414 None:intergenic 30.0%
! ACAATAGTAGTTTGTATTGG+TGG - chr1.4:74564916-74564935 MS.gene059327:intron 30.0%
! GTTATTCTCTTTTTGTCCTA+TGG - chr1.4:74566974-74566993 MS.gene059327:CDS 30.0%
! TATTTATCTAAGGTTACCTG+TGG - chr1.4:74566805-74566824 MS.gene059327:intron 30.0%
! TGTCATTTCAATCATCATCA+AGG + chr1.4:74565471-74565490 None:intergenic 30.0%
! TGTTGTTGTTGTTATTGTTG+AGG - chr1.4:74563894-74563913 MS.gene059327:intron 30.0%
! TTTTGTTCTCGAAAGAATGA+GGG - chr1.4:74564075-74564094 MS.gene059327:intron 30.0%
! TTTTTGTTCTCGAAAGAATG+AGG - chr1.4:74564074-74564093 MS.gene059327:intron 30.0%
!! AGAGGGTATACCATTAATTT+TGG - chr1.4:74566155-74566174 MS.gene059327:intron 30.0%
!! GCTAAAAGTTACTTGCTTTT+AGG - chr1.4:74566604-74566623 MS.gene059327:intron 30.0%
!! GTGTAAACTTTTGGAAACTT+TGG - chr1.4:74565062-74565081 MS.gene059327:intron 30.0%
!! TGGAGTATTTTCTTATGAAC+CGG - chr1.4:74565134-74565153 MS.gene059327:intron 30.0%
!! TTATAGGAGGTATTTCCTTA+TGG - chr1.4:74565096-74565115 MS.gene059327:intron 30.0%
!!! TTGGTGGAGTTTTTTTATCA+AGG - chr1.4:74566174-74566193 MS.gene059327:intron 30.0%
AAAAAGTTACGAATTTGGGG+TGG - chr1.4:74564875-74564894 MS.gene059327:intron 35.0%
AAATTGAAACAGTGCCAAAG+GGG - chr1.4:74565940-74565959 MS.gene059327:intron 35.0%
AAGAATAGAGCAGTACAGTA+CGG + chr1.4:74564725-74564744 None:intergenic 35.0%
AAGAATGTATTTCCTACCCT+AGG - chr1.4:74564137-74564156 MS.gene059327:CDS 35.0%
AAGTCCTAACATTGTCCATA+AGG + chr1.4:74565114-74565133 None:intergenic 35.0%
AATCTATGAAGGATTTCCTC+GGG - chr1.4:74567208-74567227 MS.gene059327:intron 35.0%
ACAGTCACATGCAAAACAAA+TGG - chr1.4:74565591-74565610 MS.gene059327:intron 35.0%
ACTATGTACTTGCAGATGAA+AGG + chr1.4:74564836-74564855 None:intergenic 35.0%
AGAATGTATTTCCTACCCTA+GGG - chr1.4:74564138-74564157 MS.gene059327:CDS 35.0%
AGGTTATATAGATACGGTAG+CGG + chr1.4:74565495-74565514 None:intergenic 35.0%
ATCTATATAACCTAGTTCGC+TGG - chr1.4:74565502-74565521 MS.gene059327:intron 35.0%
CCAAGAGTTTCATCATCATA+AGG + chr1.4:74566880-74566899 None:intergenic 35.0%
GCATTAGATATCCTACATTC+AGG - chr1.4:74566389-74566408 MS.gene059327:intron 35.0%
TATGGACAATGTTAGGACTT+TGG - chr1.4:74565114-74565133 MS.gene059327:intron 35.0%
TGTATAAATCCATTAGTGCC+AGG - chr1.4:74564004-74564023 MS.gene059327:intron 35.0%
TTCATTGTTGCCTTATGACT+TGG - chr1.4:74566531-74566550 MS.gene059327:intron 35.0%
TTGGAGAAAGTTGTGAAAGA+TGG - chr1.4:74563958-74563977 MS.gene059327:intron 35.0%
TTGTGGAGACATTAGTGAAA+GGG - chr1.4:74566848-74566867 MS.gene059327:intron 35.0%
TTTGGTGAATGCTGAGTTAT+AGG - chr1.4:74565080-74565099 MS.gene059327:intron 35.0%
TTTGTGGAGACATTAGTGAA+AGG - chr1.4:74566847-74566866 MS.gene059327:intron 35.0%
! AAGCTATCTGGTACATTTTC+TGG - chr1.4:74566561-74566580 MS.gene059327:intron 35.0%
! AGAGCTTGCTTTATTGTTTG+TGG - chr1.4:74566831-74566850 MS.gene059327:intron 35.0%
! AGCTATCTGGTACATTTTCT+GGG - chr1.4:74566562-74566581 MS.gene059327:intron 35.0%
! AGGTTTTTACAATAGACCAG+AGG + chr1.4:74564272-74564291 None:intergenic 35.0%
! CCTTATGATGATGAAACTCT+TGG - chr1.4:74566877-74566896 MS.gene059327:intron 35.0%
! GGGTATACCATTAATTTTGG+TGG - chr1.4:74566158-74566177 MS.gene059327:intron 35.0%
! GTTATTTGGGGCAAATTCTA+GGG - chr1.4:74565213-74565232 MS.gene059327:intron 35.0%
! TGTTATTTGGGGCAAATTCT+AGG - chr1.4:74565212-74565231 MS.gene059327:intron 35.0%
! TTTTAGCAACCTATGCTTTC+AGG + chr1.4:74566591-74566610 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+GGG + chr1.4:74564605-74564624 None:intergenic 35.0%
!! AAGTGTTCTAAAGTGACCAT+AGG + chr1.4:74566993-74567012 None:intergenic 35.0%
!! ATGAACCGGTTTAGAGTTTT+TGG - chr1.4:74565148-74565167 MS.gene059327:intron 35.0%
!! GATAGCAGCTTTTAAGAATG+AGG + chr1.4:74567324-74567343 None:intergenic 35.0%
!! TACAATTTGACTTGTGGTCT+TGG + chr1.4:74565793-74565812 None:intergenic 35.0%
!!! CTTTTTAACTTATGCCCCAA+GGG - chr1.4:74564587-74564606 MS.gene059327:CDS 35.0%
AAGTGCAAAAACACGTGTTG+AGG - chr1.4:74567292-74567311 MS.gene059327:intron 40.0%
AAGTGGACAGTGAATCGTAA+AGG + chr1.4:74565431-74565450 None:intergenic 40.0%
AGACCTGTGCAATTTATGCA+CGG - chr1.4:74566223-74566242 MS.gene059327:intron 40.0%
AGTGCAAAAACACGTGTTGA+GGG - chr1.4:74567293-74567312 MS.gene059327:intron 40.0%
AGTGGACAGTGAATCGTAAA+GGG + chr1.4:74565430-74565449 None:intergenic 40.0%
CCTTGGGGCATAAGTTAAAA+AGG + chr1.4:74564589-74564608 None:intergenic 40.0%
CTAAAGGTTAAAGGAGTTCG+AGG - chr1.4:74564355-74564374 MS.gene059327:intron 40.0%
CTTTGTCCAACCAAGTCATA+AGG + chr1.4:74566544-74566563 None:intergenic 40.0%
GGTTATATAGATACGGTAGC+GGG + chr1.4:74565494-74565513 None:intergenic 40.0%
GTGAATATTACCAGCGAACT+AGG + chr1.4:74565515-74565534 None:intergenic 40.0%
GTGATCAAGAGAGAAAGGAA+AGG - chr1.4:74566647-74566666 MS.gene059327:intron 40.0%
TGCCTCCAAAAACTCTAAAC+CGG + chr1.4:74565156-74565175 None:intergenic 40.0%
TGCTGTGAGCTAAAGGTTAA+AGG - chr1.4:74564346-74564365 MS.gene059327:intron 40.0%
TTGTTCAAACCTGGCACTAA+TGG + chr1.4:74564016-74564035 None:intergenic 40.0%
! AAGGTGCTCTGATAATCCAT+GGG - chr1.4:74564688-74564707 MS.gene059327:intron 40.0%
! AGAGAAAGGAAAGGCACAAA+TGG - chr1.4:74566656-74566675 MS.gene059327:intron 40.0%
! CATGCATTCAATTGGCTCAT+GGG - chr1.4:74566414-74566433 MS.gene059327:intron 40.0%
! TTCAGGAGCATGCATTCAAT+TGG - chr1.4:74566406-74566425 MS.gene059327:intron 40.0%
! TTGGAGGCATGAAAAATGCA+GGG - chr1.4:74565167-74565186 MS.gene059327:intron 40.0%
! TTTGGAGGCATGAAAAATGC+AGG - chr1.4:74565166-74565185 MS.gene059327:intron 40.0%
!! AAAGGTGCTCTGATAATCCA+TGG - chr1.4:74564687-74564706 MS.gene059327:intron 40.0%
!! AACCGGTTTAGAGTTTTTGG+AGG - chr1.4:74565151-74565170 MS.gene059327:intron 40.0%
!! AATGTTAACTTGTGCCCTTG+GGG + chr1.4:74564604-74564623 None:intergenic 40.0%
!! ATGGGGTACAATTTGACTTG+TGG + chr1.4:74565799-74565818 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr1.4:74564456-74564475 MS.gene059327:intron 40.0%
!! GAAATGTTAACTTGTGCCCT+TGG + chr1.4:74564606-74564625 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr1.4:74564455-74564474 MS.gene059327:intron 40.0%
!! TTGTTGCCTTATGACTTGGT+TGG - chr1.4:74566535-74566554 MS.gene059327:intron 40.0%
!!! CCTTTTTAACTTATGCCCCA+AGG - chr1.4:74564586-74564605 MS.gene059327:CDS 40.0%
AAAACCTGATGCCTGTGCTT+TGG - chr1.4:74564285-74564304 MS.gene059327:intron 45.0%
AAAAGGAGGTCATAGTCCCT+AGG + chr1.4:74564157-74564176 None:intergenic 45.0%
AAACCTGATGCCTGTGCTTT+GGG - chr1.4:74564286-74564305 MS.gene059327:intron 45.0%
AAAGGAGGTCATAGTCCCTA+GGG + chr1.4:74564156-74564175 None:intergenic 45.0%
AGAAGATGAAGGGCTTGATG+TGG - chr1.4:74565872-74565891 MS.gene059327:intron 45.0%
AGTGAATCGTAAAGGGGGTA+GGG + chr1.4:74565423-74565442 None:intergenic 45.0%
ATAGAGCAGTACAGTACGGT+AGG + chr1.4:74564721-74564740 None:intergenic 45.0%
ATGGCAGCAGATTGGATGAA+TGG + chr1.4:74565397-74565416 None:intergenic 45.0%
CAGCAGATTGGATGAATGGT+GGG + chr1.4:74565393-74565412 None:intergenic 45.0%
CAGCAGCTTTCAGAAAACCT+TGG - chr1.4:74567269-74567288 MS.gene059327:intron 45.0%
CGGTAGAAAGAGCCGTTATT+AGG - chr1.4:74566243-74566262 MS.gene059327:intron 45.0%
CTACCGTGCATAAATTGCAC+AGG + chr1.4:74566229-74566248 None:intergenic 45.0%
CTTACTGAGCGAGTACATCA+CGG + chr1.4:74564239-74564258 None:intergenic 45.0%
CTTGGTTGGACAAAGCTATC+TGG - chr1.4:74566549-74566568 MS.gene059327:intron 45.0%
GAATGCATGCTCCTGAATGT+AGG + chr1.4:74566403-74566422 None:intergenic 45.0%
GCAGATATGTAACTGCTCAG+AGG - chr1.4:74566357-74566376 MS.gene059327:intron 45.0%
GCATGTCATCAACATCCCAA+AGG + chr1.4:74567250-74567269 None:intergenic 45.0%
GGTGAATGCTGAGTTATAGG+AGG - chr1.4:74565083-74565102 MS.gene059327:intron 45.0%
GTGGACAGTGAATCGTAAAG+GGG + chr1.4:74565429-74565448 None:intergenic 45.0%
TACTCGCTCAGTAAGCACTT+GGG - chr1.4:74564244-74564263 MS.gene059327:intron 45.0%
TAGAGCAGTACAGTACGGTA+GGG + chr1.4:74564720-74564739 None:intergenic 45.0%
TATCTTTCCTCTCTCCCCTT+TGG + chr1.4:74565957-74565976 None:intergenic 45.0%
TCCATTGCCACAACACCTTT+GGG - chr1.4:74567232-74567251 MS.gene059327:intron 45.0%
TGGACAGTGAATCGTAAAGG+GGG + chr1.4:74565428-74565447 None:intergenic 45.0%
TTAAAGGAGTTCGAGGTCGT+GGG - chr1.4:74564362-74564381 MS.gene059327:intron 45.0%
TTCCATTGCCACAACACCTT+TGG - chr1.4:74567231-74567250 MS.gene059327:intron 45.0%
TTCTCGAAAGAATGAGGGAG+TGG - chr1.4:74564080-74564099 MS.gene059327:intron 45.0%
! GAAAGGAAAGGCACAAATGG+AGG - chr1.4:74566659-74566678 MS.gene059327:intron 45.0%
! GAGTGGTGGCATAGGATTTT+TGG - chr1.4:74564097-74564116 MS.gene059327:intron 45.0%
! GCATGCATTCAATTGGCTCA+TGG - chr1.4:74566413-74566432 MS.gene059327:intron 45.0%
! GGGTGGAAGTTCGAATCTTT+TGG + chr1.4:74563666-74563685 None:intergenic 45.0%
! TTGGTTGGAGGTGTAGTAGA+TGG + chr1.4:74565367-74565386 None:intergenic 45.0%
!! ATGAATGGTGGGTCTTTGGT+TGG + chr1.4:74565382-74565401 None:intergenic 45.0%
!! ATTTTGGGTACCTCATCAGC+GGG + chr1.4:74563686-74563705 None:intergenic 45.0%
!! CACGTGTTTTTGCACTTCCA+AGG + chr1.4:74567289-74567308 None:intergenic 45.0%
!! CTCCTTAACTTGTGCCCTTA+GGG + chr1.4:74564473-74564492 None:intergenic 45.0%
!! CTTGGAGGGAGCACTATAAA+AGG + chr1.4:74564174-74564193 None:intergenic 45.0%
!! GATTTTGGGTACCTCATCAG+CGG + chr1.4:74563687-74563706 None:intergenic 45.0%
!! TCAACATCCCAAAGGTGTTG+TGG + chr1.4:74567242-74567261 None:intergenic 45.0%
!! TTGGATGAATGGTGGGTCTT+TGG + chr1.4:74565386-74565405 None:intergenic 45.0%
!!! TTTCTGGGTTTTGGAGCGAA+GGG + chr1.4:74565335-74565354 None:intergenic 45.0%
!!! TAATTACTAATAAATTTTAA+TGG - chr1.4:74567169-74567188 MS.gene059327:intron 5.0%
AACCTGATGCCTGTGCTTTG+GGG - chr1.4:74564287-74564306 MS.gene059327:intron 50.0%
ACCCACCAAAAGCTCTTGGA+GGG + chr1.4:74564188-74564207 None:intergenic 50.0%
AGATGAAGGGCTTGATGTGG+AGG - chr1.4:74565875-74565894 MS.gene059327:intron 50.0%
AGATGGTCACGACGGTTTCT+GGG + chr1.4:74565350-74565369 None:intergenic 50.0%
CAGTGAATCGTAAAGGGGGT+AGG + chr1.4:74565424-74565443 None:intergenic 50.0%
GAGATCCCACGATACTATGG+GGG - chr1.4:74564309-74564328 MS.gene059327:intron 50.0%
GCAGCAGATTGGATGAATGG+TGG + chr1.4:74565394-74565413 None:intergenic 50.0%
GCTCAACTGCTGTGAGCTAA+AGG - chr1.4:74564339-74564358 MS.gene059327:intron 50.0%
GGAGATCCCACGATACTATG+GGG - chr1.4:74564308-74564327 MS.gene059327:intron 50.0%
GGGAGATCCCACGATACTAT+GGG - chr1.4:74564307-74564326 MS.gene059327:intron 50.0%
GGGGCTGTGTACAGTATTGT+GGG + chr1.4:74564645-74564664 None:intergenic 50.0%
GGTGTAGTAGATGGTCACGA+CGG + chr1.4:74565358-74565377 None:intergenic 50.0%
GTACTCGCTCAGTAAGCACT+TGG - chr1.4:74564243-74564262 MS.gene059327:intron 50.0%
GTGAATCGTAAAGGGGGTAG+GGG + chr1.4:74565422-74565441 None:intergenic 50.0%
GTTAAAGGAGTTCGAGGTCG+TGG - chr1.4:74564361-74564380 MS.gene059327:intron 50.0%
TAAAGCAAGCTCTGCTCCAC+AGG + chr1.4:74566824-74566843 None:intergenic 50.0%
TAGATGGTCACGACGGTTTC+TGG + chr1.4:74565351-74565370 None:intergenic 50.0%
TCGAAAGAATGAGGGAGTGG+TGG - chr1.4:74564083-74564102 MS.gene059327:intron 50.0%
! ATCAGAGCACCTTTGCCCTT+CGG + chr1.4:74564681-74564700 None:intergenic 50.0%
! CATTCAATTGGCTCATGGGC+AGG - chr1.4:74566418-74566437 MS.gene059327:intron 50.0%
! CTAGGGTGCACAAGGTGTTT+AGG - chr1.4:74565230-74565249 MS.gene059327:intron 50.0%
! GTGGGTTAAAACCCAGACGA+AGG - chr1.4:74564380-74564399 MS.gene059327:intron 50.0%
! TCCCTCCAAGAGCTTTTGGT+GGG - chr1.4:74564184-74564203 MS.gene059327:intron 50.0%
! TCTGGGACACCTGAAAGCAT+AGG - chr1.4:74566579-74566598 MS.gene059327:intron 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG - chr1.4:74564468-74564487 MS.gene059327:intron 50.0%
! TTTGGTGGGTGCCTTCATGT+GGG - chr1.4:74564198-74564217 MS.gene059327:intron 50.0%
!! AATGGTGGGTCTTTGGTTGG+AGG + chr1.4:74565379-74565398 None:intergenic 50.0%
!! GCTCCTTAACTTGTGCCCTT+AGG + chr1.4:74564474-74564493 None:intergenic 50.0%
!! GGAGGGAGCACTATAAAAGG+AGG + chr1.4:74564171-74564190 None:intergenic 50.0%
!! GGCAAATTCTAGGGTGCACA+AGG - chr1.4:74565222-74565241 MS.gene059327:intron 50.0%
!! TCACGACGGTTTCTGGGTTT+TGG + chr1.4:74565344-74565363 None:intergenic 50.0%
!! TCCCAAAGGTGTTGTGGCAA+TGG + chr1.4:74567236-74567255 None:intergenic 50.0%
!! TTTTGGTGGGTGCCTTCATG+TGG - chr1.4:74564197-74564216 MS.gene059327:intron 50.0%
!!! GTTTCTGGGTTTTGGAGCGA+AGG + chr1.4:74565336-74565355 None:intergenic 50.0%
!!! TTCTGGGTTTTGGAGCGAAG+GGG + chr1.4:74565334-74565353 None:intergenic 50.0%
AACAGTGCCAAAGGGGAGAG+AGG - chr1.4:74565947-74565966 MS.gene059327:intron 55.0%
ACCCAACCCCCATAGTATCG+TGG + chr1.4:74564318-74564337 None:intergenic 55.0%
AGGCACCCACCAAAAGCTCT+TGG + chr1.4:74564192-74564211 None:intergenic 55.0%
AGTAAGCACTTGGGCTCCTC+TGG - chr1.4:74564253-74564272 MS.gene059327:intron 55.0%
CACCCACCAAAAGCTCTTGG+AGG + chr1.4:74564189-74564208 None:intergenic 55.0%
CCCAACCCCCATAGTATCGT+GGG + chr1.4:74564317-74564336 None:intergenic 55.0%
CCCACGATACTATGGGGGTT+GGG - chr1.4:74564314-74564333 MS.gene059327:intron 55.0%
CCTTCATGTGGGCAGACATC+CGG - chr1.4:74564209-74564228 MS.gene059327:intron 55.0%
CTTGATGTGGAGGTGGAGGA+AGG - chr1.4:74565885-74565904 MS.gene059327:intron 55.0%
GAATGAGGGAGTGGTGGCAT+AGG - chr1.4:74564089-74564108 MS.gene059327:intron 55.0%
GAGGTCATAGTCCCTAGGGT+AGG + chr1.4:74564152-74564171 None:intergenic 55.0%
GGGGAGATCCCACGATACTA+TGG - chr1.4:74564306-74564325 MS.gene059327:intron 55.0%
GGGGGCTGTGTACAGTATTG+TGG + chr1.4:74564646-74564665 None:intergenic 55.0%
GGTGGTCACTCAGAGTCAGA+AGG - chr1.4:74564934-74564953 MS.gene059327:intron 55.0%
GTGGAGGTGGAGGAAGGAAA+CGG - chr1.4:74565891-74565910 MS.gene059327:intron 55.0%
TACGGTAGGGTCAGTACCCA+TGG + chr1.4:74564707-74564726 None:intergenic 55.0%
TCCCACGATACTATGGGGGT+TGG - chr1.4:74564313-74564332 MS.gene059327:intron 55.0%
TGAAGGGCTTGATGTGGAGG+TGG - chr1.4:74565878-74565897 MS.gene059327:intron 55.0%
TGTTGTGGCAATGGAACCCG+AGG + chr1.4:74567227-74567246 None:intergenic 55.0%
! CTCCCTCCAAGAGCTTTTGG+TGG - chr1.4:74564183-74564202 MS.gene059327:intron 55.0%
! GTGCTCCCTCCAAGAGCTTT+TGG - chr1.4:74564180-74564199 MS.gene059327:intron 55.0%
! TAGGGGTGATGGCAGCAGAT+TGG + chr1.4:74565405-74565424 None:intergenic 55.0%
AGGGCTTGATGTGGAGGTGG+AGG - chr1.4:74565881-74565900 MS.gene059327:intron 60.0%
CATGTGGGCAGACATCCGGT+GGG - chr1.4:74564213-74564232 MS.gene059327:intron 60.0%
CCGGATGTCTGCCCACATGA+AGG + chr1.4:74564212-74564231 None:intergenic 60.0%
CGAACTTCCACCCGCTGATG+AGG - chr1.4:74563673-74563692 MS.gene059327:CDS 60.0%
CGTAAAGGGGGTAGGGGTGA+TGG + chr1.4:74565416-74565435 None:intergenic 60.0%
CTCCCCAAAGCACAGGCATC+AGG + chr1.4:74564292-74564311 None:intergenic 60.0%
GAGGTGGAGGAAGGAAACGG+CGG - chr1.4:74565894-74565913 MS.gene059327:intron 60.0%
GTGGGATCTCCCCAAAGCAC+AGG + chr1.4:74564299-74564318 None:intergenic 60.0%
TCATGTGGGCAGACATCCGG+TGG - chr1.4:74564212-74564231 MS.gene059327:intron 60.0%
TTGGGTACCTCATCAGCGGG+TGG + chr1.4:74563683-74563702 None:intergenic 60.0%
ACACAGCCCCCCAAGCGTCA+AGG - chr1.4:74564655-74564674 MS.gene059327:intron 65.0%
CCCCAAGCGTCAAGGCCGAA+GGG - chr1.4:74564663-74564682 MS.gene059327:intron 65.0%
CCCTTCGGCCTTGACGCTTG+GGG + chr1.4:74564666-74564685 None:intergenic 65.0%
CCTTCGGCCTTGACGCTTGG+GGG + chr1.4:74564665-74564684 None:intergenic 65.0%
CTTCGGCCTTGACGCTTGGG+GGG + chr1.4:74564664-74564683 None:intergenic 65.0%
GCCCTTCGGCCTTGACGCTT+GGG + chr1.4:74564667-74564686 None:intergenic 65.0%
GCGAGTACATCACGGCCCAC+CGG + chr1.4:74564231-74564250 None:intergenic 65.0%
GCGTCAAGGCCGAAGGGCAA+AGG - chr1.4:74564669-74564688 MS.gene059327:intron 65.0%
TGCCCTTCGGCCTTGACGCT+TGG + chr1.4:74564668-74564687 None:intergenic 65.0%
CCCCCAAGCGTCAAGGCCGA+AGG - chr1.4:74564662-74564681 MS.gene059327:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 74563647 74567349 74563647 ID=MS.gene059327
chr1.4 mRNA 74563647 74567349 74563647 ID=MS.gene059327.t1;Parent=MS.gene059327
chr1.4 exon 74567302 74567349 74567302 ID=MS.gene059327.t1.exon1;Parent=MS.gene059327.t1
chr1.4 CDS 74567302 74567349 74567302 ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1
chr1.4 exon 74566971 74567050 74566971 ID=MS.gene059327.t1.exon2;Parent=MS.gene059327.t1
chr1.4 CDS 74566971 74567050 74566971 ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1
chr1.4 exon 74564557 74564635 74564557 ID=MS.gene059327.t1.exon3;Parent=MS.gene059327.t1
chr1.4 CDS 74564557 74564635 74564557 ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1
chr1.4 exon 74564098 74564179 74564098 ID=MS.gene059327.t1.exon4;Parent=MS.gene059327.t1
chr1.4 CDS 74564098 74564179 74564098 ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1
chr1.4 exon 74563647 74563801 74563647 ID=MS.gene059327.t1.exon5;Parent=MS.gene059327.t1
chr1.4 CDS 74563647 74563801 74563647 ID=cds.MS.gene059327.t1;Parent=MS.gene059327.t1
Gene Sequence

>MS.gene059327

ATGGCGCGGCAGAGATCCAAAAGATTCGAACTTCCACCCGCTGATGAGGTACCCAAAATCTACAATCCATTAATTTTGTTTCTTCTTTATTCACATTCGTTAAAAAATTACTCTTTTTAATTAAAAATTTGATTTTTATTTATTTTTCATGTAGTGGTTTTTGGTTCATTGATTGAAAATTAATTTTGTGGGTTATGCTTTATGTGTTTTCATTATTGTTTTTGTTTCTGGGTTTTGTTATTGTTGTTGTTGTTGTTGTTATTGTTGAGGTTTTTGATTAAATATGGTGTGAATTGCAGAATGTTGAAAAATTGGAGAAAGTTGTGAAAGATGGAAATTGTTACGGAGCTCAACAGATGTATAAATCCATTAGTGCCAGGTTTGAACAATTTCTTGTTGTTACTTTTTACCAAGTTTATGTTATGTGTTTTTGTTCTCGAAAGAATGAGGGAGTGGTGGCATAGGATTTTTGGTGTAAGTGTGTTGAAGAAAGAATGTATTTCCTACCCTAGGGACTATGACCTCCTTTTATAGTGCTCCCTCCAAGAGCTTTTGGTGGGTGCCTTCATGTGGGCAGACATCCGGTGGGCCGTGATGTACTCGCTCAGTAAGCACTTGGGCTCCTCTGGTCTATTGTAAAAACCTGATGCCTGTGCTTTGGGGAGATCCCACGATACTATGGGGGTTGGGTAGCTCAACTGCTGTGAGCTAAAGGTTAAAGGAGTTCGAGGTCGTGGGTTAAAACCCAGACGAAGGAGTAAATATTAATCTAACAACGAATTACTAACATATACCATTAAAAAAAGGGTCATGTTAACTTGTGCCCTAAGGGCACAAGTTAAGGAGCTTAAAATGGAAAGTCAAAGCAACTTTTATATTATAAATACAACTTTTAATGCATTGAATGCACAATTTCCAAGATTTTTTTTCTACATTTAGCCTTTTTAACTTATGCCCCAAGGGCACAAGTTAACATTTCCCTTAAAAAAAACAATCCCACAATACTGTACACAGCCCCCCAAGCGTCAAGGCCGAAGGGCAAAGGTGCTCTGATAATCCATGGGTACTGACCCTACCGTACTGTACTGCTCTATTCTTCAACAGAAATTTTTATTATGTACTCTTCATTTTATCTTCAATGTGAAAATTATAAAATTGTAAATAATTAAGTTTTCCATAGTTATTTCCTTTCATCTGCAAGTACATAGTTTATTAGATTAACTCAGGAAAAAAGTTACGAATTTGGGGTGGCAGATTAGTTAAATGTGAACAATAGTAGTTTGTATTGGTGGTCACTCAGAGTCAGAAGGACAAGTACAGAATCAATGCTAAAGATTTGATGTAGAGAATAGATATACCCTAGATTTTTGTAATATTTATGTTCTTTTTTGAGCTGGACAGTGCAGTTTCATGTAGTGTAAACTTTTGGAAACTTTGGTGAATGCTGAGTTATAGGAGGTATTTCCTTATGGACAATGTTAGGACTTTGGAGTATTTTCTTATGAACCGGTTTAGAGTTTTTGGAGGCATGAAAAATGCAGGGTTCTTCACCGTTATACATCGTATGTTATTTGGGGCAAATTCTAGGGTGCACAAGGTGTTTAGGTTGTGCACCAAGCTTCACTTTTTTAACTGTAGATTTATATTATTCCCACTACAGTTATGTTAGATCATCTATAGCATACCCCTTCGCTCCAAAACCCAGAAACCGTCGTGACCATCTACTACACCTCCAACCAAAGACCCACCATTCATCCAATCTGCTGCCATCACCCCTACCCCCTTTACGATTCACTGTCCACTTGTAATACTAACATCAACCCTTGATGATGATTGAAATGACACCCGCTACCGTATCTATATAACCTAGTTCGCTGGTAATATTCACAATTACCAAAATTGAGTTTGAACTATTTGCTTTGACTGCGCAGCAAAGAATTCAACACAGTCACATGCAAAACAAATGGTTATGCTCATTGAAATAAAAGTTATGCATGTTGCTGAGAAAGATATTGTTATGATGTTTTATAAGTAAAGCAAATAAAACAAAAACTAAGGAATAGTCAATAGATGCAAATGCCATAACCATGTAATTTTAGTTTCGAAACATCGTGTTTCTGTAATTCGTTTCTTATAAATCACACCAAGACCACAAGTCAAATTGTACCCCATAATTATAATTTATAAGCACCTTCCAAAGCATAATTTTGTTTCTGTGATGTATTAGAAGATGAAGGGCTTGATGTGGAGGTGGAGGAAGGAAACGGCGGAGAAAGAATAATGATGCAGAGATAAATTGAAACAGTGCCAAAGGGGAGAGAGGAAAGATATTACAATTCTTGATAGAACTCATAATTGAGAGAAAAGTATAGAAAAGTGAAATGGAAATAATTGTTTATGATTGAATTGTTGCATCAAGTAGTACATTAAGCGTATACAGTCAATTAAACCAACTAACTTGTAACTAATCTAACTAATATGTAACTAATTTACATCTCTAATAGGTATAGAGGGTATACCATTAATTTTGGTGGAGTTTTTTTATCAAGGAGTTTAAAAAGGTCTTGCACAGTACAAGACCTGTGCAATTTATGCACGGTAGAAAGAGCCGTTATTAGGTGCTTATAATTGGTTGATAACTGAATCAACTAATACATACTGATCAATTAAGTTGTAGAGAGTAGAAACTGATGTGCATACACGTTTTATTGCAGATATGTAACTGCTCAGAGGTACACTGAAGCATTAGATATCCTACATTCAGGAGCATGCATTCAATTGGCTCATGGGCAGGTTCTACTACTTTCTATTTTGTTGTCTTTTGAGATATACTTTAATCAACTTTATGATCTTTATTAGCCATGTAGGAGAAATTGTTAGTTTTTTCATTGTTGCCTTATGACTTGGTTGGACAAAGCTATCTGGTACATTTTCTGGGACACCTGAAAGCATAGGTTGCTAAAAGTTACTTGCTTTTAGGAAAAATAAATGAATGAAAAAGTGATCAAGAGAGAAAGGAAAGGCACAAATGGAGGATCCTGAATCCTTTTGACATTTCTATCCAAATTTACATTTAGTTTTAATTTTTAACTTTATGATAAGAATATATGCAAATAGTTTTAACAATTGACAAACAACAAAGTTTAAGTTTTATCTTCTATTTATCTAAGGTTACCTGTGGAGCAGAGCTTGCTTTATTGTTTGTGGAGACATTAGTGAAAGGGAAAATTCCTTATGATGATGAAACTCTTGGTGCGTTCTTATCCTTTCTTTTACCCTTCAATTATTTATCAGTAGTTTATTTTTTGAGCCTGTGATGCAATGTAAGTTATTCTCTTTTTGTCCTATGGTCACTTTAGAACACTTGTATATTCTGTTCTAACTCGTAATTTAATCCCATGAGATTTTTAATTTGGTGATTAACATGTATTTGCTTTTATTATATTTATTCTTCAGTAATTTTTTTTTTTAGTCTTATTTGGAGTATATAATATTTGGTCACAAAACATTCGTTCTTGTTACTAATTACTAATAAATTTTAATGGCAGATCGTCTAAAAAAAATCTATGAAGGATTTCCTCGGGTTCCATTGCCACAACACCTTTGGGATGTTGATGACATGCAGCAGCTTTCAGAAAACCTTGGAAGTGCAAAAACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGA

Protein sequence

>MS.gene059327.t1

MARQRSKRFELPPADENVEKLEKVVKDGNCYGAQQMYKSISARYVTAQRYTEALDILHSGACIQLAHGQVTCGAELALLFVETLVKGKIPYDDETLDRLKKIYEGFPRVPLPQHLWDVDDMQQLSENLGSAKTRVEGCSSFLKAAIK