Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061958.t1 | AES75227.2 | 97.1 | 103 | 3 | 0 | 1 | 103 | 12 | 114 | 1.00E-49 | 205.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061958.t1 | Q6NKW9 | 78.0 | 91 | 19 | 1 | 12 | 102 | 22 | 111 | 2.0e-33 | 142.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061958.t1 | G7KQ54 | 97.1 | 103 | 3 | 0 | 1 | 103 | 12 | 114 | 7.5e-50 | 205.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene061958 | 0.804405 | 2.19E-49 | -1.69E-46 |
| MS.gene04915 | MS.gene061958 | 0.834791 | 2.44E-56 | -1.69E-46 |
| MS.gene049166 | MS.gene061958 | 0.80719 | 5.70E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene061958 | 0.830664 | 2.59E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene061958 | 0.806825 | 6.82E-50 | -1.69E-46 |
| MS.gene049786 | MS.gene061958 | 0.833763 | 4.42E-56 | -1.69E-46 |
| MS.gene049801 | MS.gene061958 | 0.835574 | 1.55E-56 | -1.69E-46 |
| MS.gene049822 | MS.gene061958 | 0.822082 | 2.87E-53 | -1.69E-46 |
| MS.gene04984 | MS.gene061958 | 0.822236 | 2.64E-53 | -1.69E-46 |
| MS.gene04991 | MS.gene061958 | -0.822702 | 2.06E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene061958 | 0.826332 | 2.88E-54 | -1.69E-46 |
| MS.gene050084 | MS.gene061958 | 0.823766 | 1.16E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene061958 | 0.83654 | 8.82E-57 | -1.69E-46 |
| MS.gene050114 | MS.gene061958 | 0.836366 | 9.76E-57 | -1.69E-46 |
| MS.gene050317 | MS.gene061958 | 0.860938 | 1.46E-63 | -1.69E-46 |
| MS.gene050359 | MS.gene061958 | 0.822459 | 2.34E-53 | -1.69E-46 |
| MS.gene050361 | MS.gene061958 | 0.825786 | 3.88E-54 | -1.69E-46 |
| MS.gene050386 | MS.gene061958 | 0.810336 | 1.21E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene061958 | -0.81831 | 2.10E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene061958 | 0.810665 | 1.03E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene061958 | 0.861599 | 9.16E-64 | -1.69E-46 |
| MS.gene050737 | MS.gene061958 | 0.818796 | 1.63E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene061958 | 0.829274 | 5.64E-55 | -1.69E-46 |
| MS.gene050763 | MS.gene061958 | 0.82944 | 5.14E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene061958 | 0.801107 | 1.05E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene061958 | 0.861573 | 9.33E-64 | -1.69E-46 |
| MS.gene051122 | MS.gene061958 | 0.813128 | 2.99E-51 | -1.69E-46 |
| MS.gene051184 | MS.gene061958 | 0.84119 | 5.52E-58 | -1.69E-46 |
| MS.gene051210 | MS.gene061958 | 0.805518 | 1.28E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene061958 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene051275 | MS.gene061958 | 0.815497 | 8.97E-52 | -1.69E-46 |
| MS.gene051452 | MS.gene061958 | 0.821186 | 4.62E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene061958 | 0.808222 | 3.44E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene061958 | 0.815675 | 8.19E-52 | -1.69E-46 |
| MS.gene051831 | MS.gene061958 | 0.836919 | 7.06E-57 | -1.69E-46 |
| MS.gene051856 | MS.gene061958 | 0.81734 | 3.47E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene061958 | -0.829661 | 4.54E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene061958 | 0.806877 | 6.64E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene061958 | 0.849264 | 3.61E-60 | -1.69E-46 |
| MS.gene052609 | MS.gene061958 | 0.802382 | 5.76E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene061958 | 0.807039 | 6.14E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene061958 | 0.803524 | 3.35E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene061958 | 0.804493 | 2.10E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene061958 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene061958 | 0.801769 | 7.70E-49 | -1.69E-46 |
| MS.gene053167 | MS.gene061958 | 0.800913 | 1.15E-48 | -1.69E-46 |
| MS.gene053381 | MS.gene061958 | 0.836999 | 6.73E-57 | -1.69E-46 |
| MS.gene05344 | MS.gene061958 | -0.837606 | 4.71E-57 | -1.69E-46 |
| MS.gene053726 | MS.gene061958 | 0.819793 | 9.64E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene061958 | 0.824061 | 9.90E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene061958 | 0.833848 | 4.21E-56 | -1.69E-46 |
| MS.gene054823 | MS.gene061958 | 0.826934 | 2.07E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene061958 | 0.851882 | 6.64E-61 | -1.69E-46 |
| MS.gene055313 | MS.gene061958 | 0.819405 | 1.18E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene061958 | 0.813549 | 2.42E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene061958 | 0.809429 | 1.90E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene061958 | 0.831469 | 1.64E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene061958 | 0.803628 | 3.18E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene061958 | 0.800448 | 1.43E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene061958 | 0.812225 | 4.72E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene061958 | 0.816778 | 4.64E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene061958 | 0.818318 | 2.09E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene061958 | 0.856568 | 2.95E-62 | -1.69E-46 |
| MS.gene056480 | MS.gene061958 | 0.822538 | 2.25E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene061958 | 0.855511 | 6.01E-62 | -1.69E-46 |
| MS.gene056849 | MS.gene061958 | 0.870149 | 1.81E-66 | -1.69E-46 |
| MS.gene057055 | MS.gene061958 | 0.824323 | 8.59E-54 | -1.69E-46 |
| MS.gene057108 | MS.gene061958 | 0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene061958 | 0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene057360 | MS.gene061958 | 0.800175 | 1.63E-48 | -1.69E-46 |
| MS.gene057452 | MS.gene061958 | -0.811503 | 6.78E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene061958 | 0.810814 | 9.56E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene061958 | 0.800121 | 1.67E-48 | -1.69E-46 |
| MS.gene057890 | MS.gene061958 | -0.803375 | 3.59E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene061958 | 0.809735 | 1.63E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene061958 | 0.82568 | 4.11E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene061958 | 0.807469 | 4.98E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene061958 | 0.823455 | 1.37E-53 | -1.69E-46 |
| MS.gene058278 | MS.gene061958 | 0.828291 | 9.75E-55 | -1.69E-46 |
| MS.gene058292 | MS.gene061958 | 0.821144 | 4.72E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene061958 | 0.827317 | 1.67E-54 | -1.69E-46 |
| MS.gene058595 | MS.gene061958 | 0.808732 | 2.68E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene061958 | 0.836178 | 1.09E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene061958 | 0.837882 | 4.00E-57 | -1.69E-46 |
| MS.gene058646 | MS.gene061958 | 0.826623 | 2.45E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene061958 | 0.8285 | 8.69E-55 | -1.69E-46 |
| MS.gene058758 | MS.gene061958 | 0.835293 | 1.83E-56 | -1.69E-46 |
| MS.gene058836 | MS.gene061958 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene061958 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene061958 | 0.844847 | 5.87E-59 | -1.69E-46 |
| MS.gene059283 | MS.gene061958 | 0.80171 | 7.92E-49 | -1.69E-46 |
| MS.gene059327 | MS.gene061958 | 0.808253 | 3.39E-50 | -1.69E-46 |
| MS.gene059360 | MS.gene061958 | 0.866231 | 3.32E-65 | -1.69E-46 |
| MS.gene059713 | MS.gene061958 | 0.809837 | 1.55E-50 | -1.69E-46 |
| MS.gene059952 | MS.gene061958 | 0.825591 | 4.31E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene061958 | 0.841514 | 4.54E-58 | -1.69E-46 |
| MS.gene06010 | MS.gene061958 | 0.869451 | 3.07E-66 | -1.69E-46 |
| MS.gene060296 | MS.gene061958 | 0.856458 | 3.17E-62 | -1.69E-46 |
| MS.gene060297 | MS.gene061958 | 0.817321 | 3.50E-52 | -1.69E-46 |
| MS.gene060400 | MS.gene061958 | 0.802168 | 6.38E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene061958 | 0.826829 | 2.19E-54 | -1.69E-46 |
| MS.gene060850 | MS.gene061958 | 0.820428 | 6.90E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene061958 | 0.830613 | 2.66E-55 | -1.69E-46 |
| MS.gene060852 | MS.gene061958 | 0.830526 | 2.79E-55 | -1.69E-46 |
| MS.gene060869 | MS.gene061958 | 0.856914 | 2.33E-62 | -1.69E-46 |
| MS.gene060870 | MS.gene061958 | 0.867799 | 1.05E-65 | -1.69E-46 |
| MS.gene060932 | MS.gene061958 | 0.822182 | 2.72E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene061958 | 0.807215 | 5.64E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene061958 | 0.808872 | 2.50E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene061958 | 0.828049 | 1.12E-54 | -1.69E-46 |
| MS.gene06121 | MS.gene061958 | 0.838231 | 3.25E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061958.t1 | MTR_6g032820 | 97.087 | 103 | 3 | 0 | 1 | 103 | 12 | 114 | 5.07e-67 | 207 |
| MS.gene061958.t1 | MTR_7g085390 | 74.757 | 103 | 25 | 1 | 1 | 103 | 12 | 113 | 8.01e-47 | 156 |
| MS.gene061958.t1 | MTR_1g010120 | 55.769 | 104 | 44 | 2 | 1 | 103 | 12 | 114 | 2.59e-30 | 112 |
| MS.gene061958.t1 | MTR_4g112025 | 55.340 | 103 | 41 | 3 | 2 | 103 | 21 | 119 | 1.28e-27 | 105 |
| MS.gene061958.t1 | MTR_3g108600 | 56.989 | 93 | 38 | 2 | 12 | 103 | 28 | 119 | 3.58e-27 | 103 |
| MS.gene061958.t1 | MTR_1g053320 | 58.889 | 90 | 35 | 2 | 15 | 103 | 30 | 118 | 4.17e-25 | 97.8 |
| MS.gene061958.t1 | MTR_8g092070 | 51.613 | 93 | 43 | 2 | 12 | 103 | 31 | 122 | 2.66e-24 | 95.9 |
| MS.gene061958.t1 | MTR_3g095050 | 50.538 | 93 | 43 | 3 | 12 | 103 | 31 | 121 | 3.37e-23 | 92.4 |
| MS.gene061958.t1 | MTR_3g031770 | 53.659 | 82 | 37 | 1 | 13 | 93 | 25 | 106 | 2.82e-21 | 87.0 |
| MS.gene061958.t1 | MTR_2g027560 | 48.913 | 92 | 45 | 2 | 13 | 103 | 26 | 116 | 9.06e-21 | 85.5 |
| MS.gene061958.t1 | MTR_4g124440 | 46.512 | 86 | 45 | 1 | 14 | 98 | 27 | 112 | 1.25e-20 | 85.1 |
| MS.gene061958.t1 | MTR_3g080410 | 41.573 | 89 | 45 | 2 | 13 | 97 | 24 | 109 | 3.73e-14 | 66.6 |
| MS.gene061958.t1 | MTR_4g114850 | 35.443 | 79 | 50 | 1 | 16 | 93 | 27 | 105 | 1.33e-13 | 65.1 |
| MS.gene061958.t1 | MTR_1g007810 | 36.170 | 94 | 57 | 2 | 1 | 93 | 4 | 95 | 1.63e-13 | 65.1 |
| MS.gene061958.t1 | MTR_4g114850 | 35.443 | 79 | 50 | 1 | 16 | 93 | 27 | 105 | 1.85e-13 | 64.7 |
| MS.gene061958.t1 | MTR_4g114850 | 35.443 | 79 | 50 | 1 | 16 | 93 | 27 | 105 | 2.24e-13 | 64.7 |
| MS.gene061958.t1 | MTR_1g077990 | 35.802 | 81 | 52 | 0 | 13 | 93 | 29 | 109 | 8.30e-13 | 63.2 |
| MS.gene061958.t1 | MTR_5g085580 | 40.000 | 80 | 47 | 1 | 15 | 93 | 25 | 104 | 1.61e-12 | 62.4 |
| MS.gene061958.t1 | MTR_1g031900 | 40.260 | 77 | 45 | 1 | 15 | 90 | 24 | 100 | 1.99e-12 | 62.0 |
| MS.gene061958.t1 | MTR_4g010200 | 37.975 | 79 | 48 | 1 | 16 | 93 | 34 | 112 | 2.03e-12 | 62.0 |
| MS.gene061958.t1 | MTR_1g056640 | 38.554 | 83 | 44 | 2 | 15 | 93 | 38 | 117 | 2.61e-12 | 61.6 |
| MS.gene061958.t1 | MTR_1g031900 | 40.260 | 77 | 45 | 1 | 15 | 90 | 24 | 100 | 3.79e-12 | 61.2 |
| MS.gene061958.t1 | MTR_4g084480 | 31.395 | 86 | 59 | 0 | 8 | 93 | 25 | 110 | 5.84e-12 | 60.5 |
| MS.gene061958.t1 | MTR_4g084480 | 31.395 | 86 | 59 | 0 | 8 | 93 | 25 | 110 | 6.29e-12 | 60.5 |
| MS.gene061958.t1 | MTR_4g084480 | 31.395 | 86 | 59 | 0 | 8 | 93 | 18 | 103 | 7.36e-12 | 60.5 |
| MS.gene061958.t1 | MTR_7g026340 | 36.145 | 83 | 52 | 1 | 12 | 93 | 20 | 102 | 7.38e-12 | 60.5 |
| MS.gene061958.t1 | MTR_5g078200 | 36.250 | 80 | 50 | 1 | 15 | 93 | 23 | 102 | 1.07e-11 | 60.1 |
| MS.gene061958.t1 | MTR_3g065460 | 36.250 | 80 | 50 | 1 | 15 | 93 | 24 | 103 | 2.31e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061958.t1 | AT1G64760 | 78.022 | 91 | 19 | 1 | 12 | 102 | 22 | 111 | 3.06e-41 | 141 |
| MS.gene061958.t1 | AT1G64760 | 78.022 | 91 | 19 | 1 | 12 | 102 | 22 | 111 | 3.06e-41 | 141 |
| MS.gene061958.t1 | AT2G19440 | 76.923 | 91 | 20 | 1 | 12 | 102 | 18 | 107 | 3.16e-40 | 139 |
| MS.gene061958.t1 | AT2G19440 | 76.923 | 91 | 20 | 1 | 12 | 102 | 18 | 107 | 3.16e-40 | 139 |
| MS.gene061958.t1 | AT3G04010 | 59.434 | 106 | 39 | 2 | 1 | 103 | 16 | 120 | 2.72e-35 | 125 |
| MS.gene061958.t1 | AT5G18220 | 69.880 | 83 | 25 | 0 | 12 | 94 | 27 | 109 | 4.41e-35 | 125 |
| MS.gene061958.t1 | AT5G64790 | 57.692 | 104 | 42 | 2 | 1 | 103 | 14 | 116 | 2.99e-31 | 114 |
| MS.gene061958.t1 | AT5G58090 | 57.778 | 90 | 36 | 2 | 15 | 103 | 22 | 110 | 1.33e-27 | 104 |
| MS.gene061958.t1 | AT5G20870 | 53.684 | 95 | 43 | 1 | 5 | 98 | 20 | 114 | 4.51e-27 | 103 |
| MS.gene061958.t1 | AT4G31140 | 48.039 | 102 | 51 | 2 | 3 | 103 | 15 | 115 | 6.01e-26 | 100 |
| MS.gene061958.t1 | AT3G24330 | 53.333 | 90 | 40 | 2 | 15 | 103 | 39 | 127 | 9.60e-23 | 91.3 |
| MS.gene061958.t1 | AT5G58480 | 51.807 | 83 | 39 | 1 | 12 | 93 | 23 | 105 | 3.79e-22 | 89.7 |
| MS.gene061958.t1 | AT4G17180 | 46.512 | 86 | 42 | 2 | 14 | 99 | 24 | 105 | 2.03e-18 | 79.0 |
| MS.gene061958.t1 | AT5G42100 | 42.683 | 82 | 47 | 0 | 12 | 93 | 24 | 105 | 1.17e-15 | 71.2 |
| MS.gene061958.t1 | AT5G42100 | 42.683 | 82 | 47 | 0 | 12 | 93 | 24 | 105 | 1.18e-15 | 71.2 |
| MS.gene061958.t1 | AT5G55180 | 39.759 | 83 | 43 | 2 | 15 | 93 | 27 | 106 | 5.57e-14 | 66.6 |
| MS.gene061958.t1 | AT5G55180 | 38.462 | 91 | 47 | 3 | 9 | 93 | 19 | 106 | 8.65e-14 | 65.9 |
| MS.gene061958.t1 | AT2G01630 | 38.750 | 80 | 48 | 1 | 15 | 93 | 23 | 102 | 8.91e-14 | 65.9 |
| MS.gene061958.t1 | AT2G01630 | 38.750 | 80 | 48 | 1 | 15 | 93 | 23 | 102 | 1.47e-13 | 65.1 |
| MS.gene061958.t1 | AT2G01630 | 38.750 | 80 | 48 | 1 | 15 | 93 | 23 | 102 | 1.74e-13 | 65.1 |
| MS.gene061958.t1 | AT2G05790 | 41.975 | 81 | 46 | 1 | 15 | 94 | 25 | 105 | 2.55e-13 | 64.7 |
| MS.gene061958.t1 | AT3G15800 | 35.484 | 93 | 57 | 2 | 11 | 102 | 39 | 129 | 4.62e-13 | 63.9 |
| MS.gene061958.t1 | AT4G26830 | 37.500 | 80 | 49 | 1 | 15 | 93 | 25 | 104 | 7.41e-13 | 63.2 |
| MS.gene061958.t1 | AT4G26830 | 37.500 | 80 | 49 | 1 | 15 | 93 | 29 | 108 | 9.47e-13 | 62.8 |
| MS.gene061958.t1 | AT2G26600 | 34.524 | 84 | 54 | 1 | 11 | 93 | 30 | 113 | 2.06e-12 | 62.0 |
| MS.gene061958.t1 | AT1G32860 | 34.177 | 79 | 52 | 0 | 15 | 93 | 29 | 107 | 3.19e-12 | 61.6 |
| MS.gene061958.t1 | AT1G11820 | 35.000 | 80 | 51 | 1 | 15 | 93 | 44 | 123 | 1.91e-11 | 59.3 |
| MS.gene061958.t1 | AT1G11820 | 35.000 | 80 | 51 | 1 | 15 | 93 | 44 | 123 | 1.96e-11 | 59.3 |
| MS.gene061958.t1 | AT1G11820 | 35.000 | 80 | 51 | 1 | 15 | 93 | 44 | 123 | 2.48e-11 | 58.9 |
| MS.gene061958.t1 | AT4G18340 | 29.592 | 98 | 64 | 1 | 1 | 93 | 15 | 112 | 3.39e-11 | 58.5 |
| MS.gene061958.t1 | AT4G18340 | 29.592 | 98 | 64 | 1 | 1 | 93 | 15 | 112 | 3.77e-11 | 58.5 |
| MS.gene061958.t1 | AT1G30080 | 29.126 | 103 | 71 | 1 | 2 | 102 | 23 | 125 | 5.27e-11 | 57.8 |
| MS.gene061958.t1 | AT1G30080 | 29.126 | 103 | 71 | 1 | 2 | 102 | 23 | 125 | 5.29e-11 | 57.8 |
| MS.gene061958.t1 | AT3G13560 | 36.250 | 80 | 50 | 1 | 15 | 93 | 26 | 105 | 7.29e-11 | 57.8 |
| MS.gene061958.t1 | AT3G13560 | 36.250 | 80 | 50 | 1 | 15 | 93 | 26 | 105 | 7.29e-11 | 57.8 |
| MS.gene061958.t1 | AT3G13560 | 36.250 | 80 | 50 | 1 | 15 | 93 | 26 | 105 | 7.29e-11 | 57.8 |
| MS.gene061958.t1 | AT3G13560 | 36.250 | 80 | 50 | 1 | 15 | 93 | 26 | 105 | 7.29e-11 | 57.8 |
| MS.gene061958.t1 | AT3G13560 | 36.250 | 80 | 50 | 1 | 15 | 93 | 26 | 105 | 7.29e-11 | 57.8 |
Find 16 sgRNAs with CRISPR-Local
Find 20 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAGCTAATTGATTATT+AGG | 0.201538 | 6.2:+20956674 | None:intergenic |
| AACATTTGTACAACTGTATC+TGG | 0.259099 | 6.2:+20956794 | None:intergenic |
| GGAAGGACTTGGTGTGAATT+GGG | 0.317702 | 6.2:-20956843 | MS.gene061958:CDS |
| TGGAAGGACTTGGTGTGAAT+TGG | 0.327363 | 6.2:-20956844 | MS.gene061958:CDS |
| GTACAAATGTTGAAAGATAA+TGG | 0.351290 | 6.2:-20956782 | MS.gene061958:CDS |
| ACTCGTTATAACTTCAAATC+TGG | 0.376451 | 6.2:-20956608 | MS.gene061958:CDS |
| ATGAGTGCACTTGGTGGGTC+AGG | 0.429886 | 6.2:-20956719 | MS.gene061958:CDS |
| TTATGATCGTGCTTTGCAAT+GGG | 0.469916 | 6.2:-20956645 | MS.gene061958:CDS |
| ACAACTGTATCTGGTTTCAA+TGG | 0.506632 | 6.2:+20956803 | None:intergenic |
| ATTATGATCGTGCTTTGCAA+TGG | 0.517702 | 6.2:-20956646 | MS.gene061958:CDS |
| TGGGTCAGGTATTGAAGTAA+TGG | 0.555721 | 6.2:-20956705 | MS.gene061958:CDS |
| CGTTATAACTTCAAATCTGG+TGG | 0.565387 | 6.2:-20956605 | MS.gene061958:CDS |
| AAACTATGAGTGCACTTGGT+GGG | 0.583255 | 6.2:-20956724 | MS.gene061958:CDS |
| GAAGGACTTGGTGTGAATTG+GGG | 0.620435 | 6.2:-20956842 | MS.gene061958:CDS |
| GAAGAAACTATGAGTGCACT+TGG | 0.642757 | 6.2:-20956728 | MS.gene061958:CDS |
| GAAACTATGAGTGCACTTGG+TGG | 0.667838 | 6.2:-20956725 | MS.gene061958:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAGCTAATTGATTATT+AGG | + | chr6.2:20956796-20956815 | None:intergenic | 20.0% |
| ! | GTACAAATGTTGAAAGATAA+TGG | - | chr6.2:20956685-20956704 | MS.gene061958:CDS | 25.0% |
| !!! | TGATGATGAGTACAATTTTT+TGG | - | chr6.2:20956596-20956615 | MS.gene061958:CDS | 25.0% |
| AACATTTGTACAACTGTATC+TGG | + | chr6.2:20956676-20956695 | None:intergenic | 30.0% | |
| ACTCGTTATAACTTCAAATC+TGG | - | chr6.2:20956859-20956878 | MS.gene061958:CDS | 30.0% | |
| !!! | ACAATTTTTTGGTATGTGGA+AGG | - | chr6.2:20956607-20956626 | MS.gene061958:CDS | 30.0% |
| !!! | GAGTACAATTTTTTGGTATG+TGG | - | chr6.2:20956603-20956622 | MS.gene061958:CDS | 30.0% |
| ATTATGATCGTGCTTTGCAA+TGG | - | chr6.2:20956821-20956840 | MS.gene061958:CDS | 35.0% | |
| CGTTATAACTTCAAATCTGG+TGG | - | chr6.2:20956862-20956881 | MS.gene061958:CDS | 35.0% | |
| TTATGATCGTGCTTTGCAAT+GGG | - | chr6.2:20956822-20956841 | MS.gene061958:CDS | 35.0% | |
| ! | ACAACTGTATCTGGTTTCAA+TGG | + | chr6.2:20956667-20956686 | None:intergenic | 35.0% |
| AAACTATGAGTGCACTTGGT+GGG | - | chr6.2:20956743-20956762 | MS.gene061958:CDS | 40.0% | |
| GAAGAAACTATGAGTGCACT+TGG | - | chr6.2:20956739-20956758 | MS.gene061958:CDS | 40.0% | |
| ! | TTTTGGTATGTGGAAGGACT+TGG | - | chr6.2:20956613-20956632 | MS.gene061958:CDS | 40.0% |
| !! | TGGGTCAGGTATTGAAGTAA+TGG | - | chr6.2:20956762-20956781 | MS.gene061958:CDS | 40.0% |
| GAAACTATGAGTGCACTTGG+TGG | - | chr6.2:20956742-20956761 | MS.gene061958:CDS | 45.0% | |
| !! | GAAGGACTTGGTGTGAATTG+GGG | - | chr6.2:20956625-20956644 | MS.gene061958:CDS | 45.0% |
| !! | GGAAGGACTTGGTGTGAATT+GGG | - | chr6.2:20956624-20956643 | MS.gene061958:CDS | 45.0% |
| !! | TGGAAGGACTTGGTGTGAAT+TGG | - | chr6.2:20956623-20956642 | MS.gene061958:CDS | 45.0% |
| ! | ATGAGTGCACTTGGTGGGTC+AGG | - | chr6.2:20956748-20956767 | MS.gene061958:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 20956589 | 20956900 | 20956589 | ID=MS.gene061958 |
| chr6.2 | mRNA | 20956589 | 20956900 | 20956589 | ID=MS.gene061958.t1;Parent=MS.gene061958 |
| chr6.2 | exon | 20956589 | 20956900 | 20956589 | ID=MS.gene061958.t1.exon1;Parent=MS.gene061958.t1 |
| chr6.2 | CDS | 20956589 | 20956900 | 20956589 | ID=cds.MS.gene061958.t1;Parent=MS.gene061958.t1 |
| Gene Sequence |
| Protein sequence |
