AlfalfaGEDB | MS.gene072565

M. sativa cultivar XinJiangDaYe / MS.gene072565

KEGG: -
GO: -
PFAM: PF04398.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072565.t1	XP_013450442.1	96.5	173	2	3	1	172	1	170	7.80E-82	313.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072565.t1	B7FGJ8	96.5	173	2	3	1	172	1	170	5.6e-82	313.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene072565	0.836111	1.13E-56	-1.69E-46
MS.gene049178	MS.gene072565	0.819675	1.03E-52	-1.69E-46
MS.gene04917	MS.gene072565	0.82924	5.75E-55	-1.69E-46
MS.gene049322	MS.gene072565	0.808787	2.61E-50	-1.69E-46
MS.gene049378	MS.gene072565	0.832196	1.09E-55	-1.69E-46
MS.gene049382	MS.gene072565	0.824464	7.96E-54	-1.69E-46
MS.gene049756	MS.gene072565	0.822865	1.88E-53	-1.69E-46
MS.gene049758	MS.gene072565	0.829217	5.82E-55	-1.69E-46
MS.gene04984	MS.gene072565	0.850887	1.27E-60	-1.69E-46
MS.gene050114	MS.gene072565	0.802337	5.89E-49	-1.69E-46
MS.gene050128	MS.gene072565	0.804495	2.10E-49	-1.69E-46
MS.gene050226	MS.gene072565	0.829511	4.94E-55	-1.69E-46
MS.gene050227	MS.gene072565	0.810202	1.30E-50	-1.69E-46
MS.gene050228	MS.gene072565	0.810237	1.27E-50	-1.69E-46
MS.gene050317	MS.gene072565	0.808957	2.40E-50	-1.69E-46
MS.gene050361	MS.gene072565	0.801338	9.44E-49	-1.69E-46
MS.gene050527	MS.gene072565	0.809823	1.56E-50	-1.69E-46
MS.gene050623	MS.gene072565	-0.858979	5.68E-63	-1.69E-46
MS.gene050629	MS.gene072565	-0.835778	1.38E-56	-1.69E-46
MS.gene050735	MS.gene072565	0.825244	5.21E-54	-1.69E-46
MS.gene050762	MS.gene072565	0.980365	4.73E-150	-1.69E-46
MS.gene050763	MS.gene072565	0.979412	6.54E-148	-1.69E-46
MS.gene050807	MS.gene072565	0.804817	1.80E-49	-1.69E-46
MS.gene050815	MS.gene072565	0.804606	1.99E-49	-1.69E-46
MS.gene050826	MS.gene072565	0.832569	8.77E-56	-1.69E-46
MS.gene050987	MS.gene072565	0.805037	1.62E-49	-1.69E-46
MS.gene051535	MS.gene072565	0.82817	1.04E-54	-1.69E-46
MS.gene051631	MS.gene072565	-0.833888	4.12E-56	-1.69E-46
MS.gene051789	MS.gene072565	0.800191	1.62E-48	-1.69E-46
MS.gene052115	MS.gene072565	0.81136	7.28E-51	-1.69E-46
MS.gene052665	MS.gene072565	0.835897	1.28E-56	-1.69E-46
MS.gene052856	MS.gene072565	0.818821	1.60E-52	-1.69E-46
MS.gene052970	MS.gene072565	-0.814409	1.56E-51	-1.69E-46
MS.gene054379	MS.gene072565	0.943894	5.27E-103	-1.69E-46
MS.gene054930	MS.gene072565	0.807566	4.75E-50	-1.69E-46
MS.gene055207	MS.gene072565	0.814162	1.77E-51	-1.69E-46
MS.gene055311	MS.gene072565	0.806615	7.55E-50	-1.69E-46
MS.gene055413	MS.gene072565	0.830476	2.87E-55	-1.69E-46
MS.gene055441	MS.gene072565	0.809178	2.15E-50	-1.69E-46
MS.gene055816	MS.gene072565	-0.810995	8.74E-51	-1.69E-46
MS.gene056069	MS.gene072565	-0.80293	4.44E-49	-1.69E-46
MS.gene056400	MS.gene072565	0.82597	3.51E-54	-1.69E-46
MS.gene056464	MS.gene072565	-0.81193	5.47E-51	-1.69E-46
MS.gene056480	MS.gene072565	0.805447	1.33E-49	-1.69E-46
MS.gene056552	MS.gene072565	0.811034	8.57E-51	-1.69E-46
MS.gene056760	MS.gene072565	0.804602	2.00E-49	-1.69E-46
MS.gene057451	MS.gene072565	-0.824704	6.99E-54	-1.69E-46
MS.gene057452	MS.gene072565	-0.824429	8.11E-54	-1.69E-46
MS.gene057665	MS.gene072565	0.807248	5.54E-50	-1.69E-46
MS.gene057929	MS.gene072565	0.830571	2.72E-55	-1.69E-46
MS.gene058182	MS.gene072565	0.846127	2.64E-59	-1.69E-46
MS.gene058638	MS.gene072565	0.841312	5.13E-58	-1.69E-46
MS.gene058639	MS.gene072565	0.854179	1.46E-61	-1.69E-46
MS.gene058646	MS.gene072565	0.801206	1.00E-48	-1.69E-46
MS.gene058758	MS.gene072565	0.825811	3.82E-54	-1.69E-46
MS.gene059327	MS.gene072565	0.802805	4.71E-49	-1.69E-46
MS.gene059713	MS.gene072565	0.832469	9.29E-56	-1.69E-46
MS.gene059725	MS.gene072565	0.80608	9.78E-50	-1.69E-46
MS.gene060084	MS.gene072565	0.893466	6.12E-75	-1.69E-46
MS.gene060296	MS.gene072565	0.833097	6.49E-56	-1.69E-46
MS.gene060297	MS.gene072565	0.809084	2.25E-50	-1.69E-46
MS.gene060480	MS.gene072565	0.824235	9.01E-54	-1.69E-46
MS.gene060495	MS.gene072565	0.803528	3.34E-49	-1.69E-46
MS.gene060563	MS.gene072565	0.804896	1.73E-49	-1.69E-46
MS.gene060637	MS.gene072565	0.817121	3.89E-52	-1.69E-46
MS.gene060802	MS.gene072565	0.838369	3.00E-57	-1.69E-46
MS.gene060803	MS.gene072565	0.831664	1.47E-55	-1.69E-46
MS.gene060869	MS.gene072565	0.840737	7.26E-58	-1.69E-46
MS.gene060870	MS.gene072565	0.827178	1.81E-54	-1.69E-46
MS.gene060940	MS.gene072565	0.807141	5.84E-50	-1.69E-46
MS.gene060943	MS.gene072565	0.807523	4.85E-50	-1.69E-46
MS.gene060998	MS.gene072565	0.811698	6.15E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072565.t1	MTR_7g111900	96.532	173	2	3	1	172	1	170	1.43e-114	322
MS.gene072565.t1	MTR_7g103200	85.065	154	21	1	1	154	1	152	3.97e-92	265
MS.gene072565.t1	MTR_1g084200	71.233	146	42	0	1	146	1	146	4.03e-73	218
MS.gene072565.t1	MTR_2g019480	49.254	134	68	0	10	143	14	147	8.82e-49	155
MS.gene072565.t1	MTR_2g046150	44.375	160	88	1	2	161	6	164	3.60e-40	134
MS.gene072565.t1	MTR_4g122930	50.714	140	65	2	1	138	1	138	6.76e-39	130
MS.gene072565.t1	MTR_2g091210	45.528	123	67	0	17	139	12	134	1.03e-33	116
MS.gene072565.t1	MTR_2g091215	53.636	110	51	0	28	137	23	132	1.19e-32	114

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072565.t1	AT1G09310	62.222	180	55	2	1	168	1	179	9.67e-70	209
MS.gene072565.t1	AT1G56580	63.953	172	51	4	1	167	1	166	1.08e-68	206
MS.gene072565.t1	AT5G46230	47.692	130	68	0	12	141	14	143	3.87e-46	148
MS.gene072565.t1	AT4G24130	45.185	135	74	0	9	143	13	147	4.00e-39	130
MS.gene072565.t1	AT1G30020	43.571	140	77	1	13	150	15	154	8.31e-37	125
MS.gene072565.t1	AT5G49600	46.207	145	68	4	3	138	1	144	6.09e-35	120

Find 0 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACACACAAATTCGAAAAGAT+TGG	+	51768:7681-7700	MS.gene072565:CDS	30.0%
	CAATTTCAAAAGCAGAAACA+GGG	-	51768:7887-7906	None:intergenic	30.0%
	CACACAAATTCGAAAAGATT+GGG	+	51768:7682-7701	MS.gene072565:CDS	30.0%
	TCAATGGTAAAAGACCATTT+GGG	-	51768:7593-7612	None:intergenic	30.0%
	TCAATTTCAAAAGCAGAAAC+AGG	-	51768:7888-7907	None:intergenic	30.0%
	TTCAATGGTAAAAGACCATT+TGG	-	51768:7594-7613	None:intergenic	30.0%
!	AAACTTCTAAAAAGTCCAGA+AGG	-	51768:7864-7883	None:intergenic	30.0%
!	TTGAATGTGATTTTACCAGT+TGG	-	51768:7837-7856	None:intergenic	30.0%
!!	AAACCAAAGAGCTTTTGATT+TGG	+	51768:7778-7797	MS.gene072565:CDS	30.0%
!!!	AACCAAAGAGCTTTTGATTT+GGG	+	51768:7779-7798	MS.gene072565:CDS	30.0%
	AAAGAAATCTCTCTCCCAAA+TGG	+	51768:7576-7595	MS.gene072565:CDS	35.0%
	AACCCAAATCAAAAGCTCTT+TGG	-	51768:7784-7803	None:intergenic	35.0%
	ACTTCAGTGATGTCTTTCAA+TGG	-	51768:7609-7628	None:intergenic	35.0%
	AGAAATCAAATCCAAATCCG+AGG	+	51768:7506-7525	MS.gene072565:CDS	35.0%
	ATCACATTCAAAACACCTTC+TGG	+	51768:7846-7865	MS.gene072565:CDS	35.0%
	GAAGAGAAAGAGAAATCAAG+TGG	+	51768:7909-7928	MS.gene072565:CDS	35.0%
	GGTAAGATCAAGAAACTGAA+CGG	+	51768:7750-7769	MS.gene072565:CDS	35.0%
	TTGAAAGACATCACTGAAGT+TGG	+	51768:7609-7628	MS.gene072565:CDS	35.0%
!	AATGTGATTTTACCAGTTGG+TGG	-	51768:7834-7853	None:intergenic	35.0%
!	GATTTCTTTGAGAAGCTCTT+TGG	-	51768:7565-7584	None:intergenic	35.0%
!	TATATTGATGATCCACCAAC+TGG	+	51768:7819-7838	MS.gene072565:CDS	35.0%
!!!	ACAGAGAAACAGGTTTTGTT+TGG	+	51768:7637-7656	MS.gene072565:CDS	35.0%
	GTCACTGCTTACGTTGAAAA+TGG	+	51768:7729-7748	MS.gene072565:CDS	40.0%
	GTTGGTTACAACAGAGAAAC+AGG	+	51768:7627-7646	MS.gene072565:CDS	40.0%
	TGTTAAGGAAGCTGCTAACA+AGG	+	51768:7938-7957	MS.gene072565:CDS	40.0%
	TTCAACGTAAGCAGTGACTT+CGG	-	51768:7727-7746	None:intergenic	40.0%
!!	ATCAAGTGGTGCTACTGTTA+AGG	+	51768:7923-7942	MS.gene072565:CDS	40.0%
	ACTTCGGTAGCATAGGAAAC+AGG	-	51768:7711-7730	None:intergenic	45.0%
	TCCAAATCCGAGGTTTACCA+TGG	+	51768:7516-7535	MS.gene072565:CDS	45.0%
	TCCATGGTAAACCTCGGATT+TGG	-	51768:7520-7539	None:intergenic	45.0%
	TTCGTCTCCATGGTAAACCT+CGG	-	51768:7526-7545	None:intergenic	45.0%
!	TACTGCTGCTGGTGTTAAAG+AGG	+	51768:7980-7999	MS.gene072565:CDS	45.0%
	AGCAGTGACTTCGGTAGCAT+AGG	-	51768:7718-7737	None:intergenic	50.0%
	CCATGGAGACGAAATGTGTC+AGG	+	51768:7533-7552	MS.gene072565:CDS	50.0%
	CCTGACACATTTCGTCTCCA+TGG	-	51768:7536-7555	None:intergenic	50.0%
	ACTGTTGCTGCTACTGCTGC+TGG	+	51768:7969-7988	MS.gene072565:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
51768	gene	7489	8007	7489	ID=MS.gene072565
51768	mRNA	7489	8007	7489	ID=MS.gene072565.t1;Parent=MS.gene072565
51768	exon	7489	8007	7489	ID=MS.gene072565.t1.exon1;Parent=MS.gene072565.t1
51768	CDS	7489	8007	7489	ID=cds.MS.gene072565.t1;Parent=MS.gene072565.t1

Gene Sequence

>MS.gene072565

ATGTCGTTGGTAACAGAAGAAATCAAATCCAAATCCGAGGTTTACCATGGAGACGAAATGTGTCAGGTGAAATCCAAAGAGCTTCTCAAAGAAATCTCTCTCCCAAATGGTCTTTTACCATTGAAAGACATCACTGAAGTTGGTTACAACAGAGAAACAGGTTTTGTTTGGCTGAAACAGAAGAAAAGCATAACACACAAATTCGAAAAGATTGGGAAACCTGTTTCCTATGCTACCGAAGTCACTGCTTACGTTGAAAATGGTAAGATCAAGAAACTGAACGGTGTTAAAACCAAAGAGCTTTTGATTTGGGTTACTTTGTGTGATATTTATATTGATGATCCACCAACTGGTAAAATCACATTCAAAACACCTTCTGGACTTTTTAGAAGTTTCCCTGTTTCTGCTTTTGAAATTGAAGAAGAGAAAGAGAAATCAAGTGGTGCTACTGTTAAGGAAGCTGCTAACAAGGTCAATGAAACTGTTGCTGCTACTGCTGCTGGTGTTAAAGAGGTCTAA

Protein sequence

>MS.gene072565.t1

MSLVTEEIKSKSEVYHGDEMCQVKSKELLKEISLPNGLLPLKDITEVGYNRETGFVWLKQKKSITHKFEKIGKPVSYATEVTAYVENGKIKKLNGVKTKELLIWVTLCDIYIDDPPTGKITFKTPSGLFRSFPVSAFEIEEEKEKSSGATVKEAANKVNETVAATAAGVKEV