AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059595

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059595.t1 MTR_6g088320 91.949 236 19 0 1 236 30 265 2.55e-164 455
MS.gene059595.t1 MTR_8g102910 79.018 224 47 0 1 224 26 249 7.57e-138 388
MS.gene059595.t1 MTR_2g038860 62.176 193 71 1 3 193 32 224 1.15e-89 266
MS.gene059595.t1 MTR_2g038705 62.176 193 71 1 3 193 32 224 1.15e-89 266
MS.gene059595.t1 MTR_4g128410 57.269 227 91 2 3 223 31 257 3.62e-89 265
MS.gene059595.t1 MTR_7g093530 64.398 191 66 1 3 191 30 220 2.09e-87 260
MS.gene059595.t1 MTR_4g128570 63.077 195 70 1 3 195 37 231 6.81e-87 259
MS.gene059595.t1 MTR_4g128580 63.452 197 69 2 3 196 32 228 6.61e-86 257
MS.gene059595.t1 MTR_4g128400 62.437 197 72 1 3 197 34 230 1.92e-85 256
MS.gene059595.t1 MTR_3g084630 61.702 188 70 1 3 188 34 221 9.06e-84 251
MS.gene059595.t1 MTR_3g084620 61.702 188 70 1 3 188 34 221 9.67e-84 251
MS.gene059595.t1 MTR_4g126920 59.585 193 76 1 3 193 31 223 1.15e-83 251
MS.gene059595.t1 MTR_8g081040 60.638 188 72 1 3 188 37 224 4.40e-83 249
MS.gene059595.t1 MTR_7g084770 50.446 224 106 3 2 223 37 257 1.20e-79 241
MS.gene059595.t1 MTR_7g084760 50.446 224 106 3 2 223 37 257 1.75e-79 241
MS.gene059595.t1 MTR_7g084750 49.565 230 111 3 4 231 39 265 2.89e-79 240
MS.gene059595.t1 MTR_2g089140 45.992 237 123 1 5 236 33 269 9.36e-77 233
MS.gene059595.t1 MTR_4g097700 48.117 239 117 4 1 236 73 307 1.91e-76 234
MS.gene059595.t1 MTR_4g097640 48.117 239 117 4 1 236 36 270 1.98e-76 233
MS.gene059595.t1 MTR_4g097670 48.117 239 117 4 1 236 36 270 1.98e-76 233
MS.gene059595.t1 MTR_4g128590 58.549 193 62 2 3 193 37 213 2.51e-76 232
MS.gene059595.t1 MTR_6g033085 50.901 222 104 3 4 223 39 257 2.92e-76 232
MS.gene059595.t1 MTR_6g033055 50.000 222 106 3 4 223 39 257 9.07e-76 231
MS.gene059595.t1 MTR_8g102220 61.628 172 64 1 3 172 35 206 1.44e-75 230
MS.gene059595.t1 MTR_4g045853 46.352 233 120 1 4 231 34 266 1.05e-74 228
MS.gene059595.t1 MTR_3g089540 56.383 188 82 0 13 200 48 235 2.83e-73 224
MS.gene059595.t1 MTR_1g105900 45.333 225 119 2 1 223 38 260 4.20e-70 217
MS.gene059595.t1 MTR_5g091730 55.056 178 80 0 14 191 47 224 3.32e-69 214
MS.gene059595.t1 MTR_2g089140 47.573 206 103 1 36 236 1 206 3.72e-69 212
MS.gene059595.t1 MTR_8g013055 48.649 222 108 4 3 222 37 254 4.44e-69 214
MS.gene059595.t1 MTR_1g105495 46.262 214 108 3 3 211 41 252 1.95e-66 207
MS.gene059595.t1 MTR_7g056090 40.625 224 123 6 3 223 38 254 4.18e-54 176
MS.gene059595.t1 MTR_2g049130 41.441 222 120 7 5 223 37 251 1.15e-50 167
MS.gene059595.t1 MTR_7g102260 42.564 195 101 4 5 191 45 236 2.51e-49 163
MS.gene059595.t1 MTR_1g063020 42.564 195 101 3 5 191 48 239 4.70e-49 163
MS.gene059595.t1 MTR_4g057450 39.450 218 121 4 5 214 58 272 6.31e-49 163
MS.gene059595.t1 MTR_2g049030 43.814 194 100 6 5 195 38 225 1.37e-48 161
MS.gene059595.t1 MTR_2g095800 42.051 195 102 4 5 191 62 253 2.25e-47 159
MS.gene059595.t1 MTR_1g033420 38.389 211 117 5 2 202 37 244 1.85e-43 149
MS.gene059595.t1 MTR_5g029100 41.711 187 97 6 13 191 60 242 2.72e-39 139
MS.gene059595.t1 MTR_8g064180 35.859 198 121 3 11 203 62 258 2.74e-37 133
MS.gene059595.t1 MTR_8g090100 31.513 238 142 8 5 232 29 255 3.62e-37 132
MS.gene059595.t1 MTR_5g029100 43.827 162 79 6 38 191 54 211 4.94e-36 130
MS.gene059595.t1 MTR_8g032640 37.671 146 83 4 17 160 33 172 7.16e-17 76.6
MS.gene059595.t1 MTR_8g479340 49.091 55 26 1 157 211 41 93 9.75e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059595.t1 AT4G28850 66.087 230 77 1 3 231 35 264 2.96e-117 337
MS.gene059595.t1 AT5G57530 59.276 221 87 2 3 220 33 253 1.04e-86 259
MS.gene059595.t1 AT2G18800 61.836 207 73 3 3 203 34 240 1.24e-85 256
MS.gene059595.t1 AT5G57550 61.616 198 74 1 3 198 36 233 1.47e-85 256
MS.gene059595.t1 AT5G57540 56.250 224 95 2 3 224 32 254 1.18e-83 251
MS.gene059595.t1 AT3G23730 58.639 191 77 1 3 191 33 223 1.09e-82 249
MS.gene059595.t1 AT5G57560 58.586 198 80 1 3 198 29 226 1.48e-82 248
MS.gene059595.t1 AT4G14130 58.639 191 77 1 3 191 34 224 4.37e-82 247
MS.gene059595.t1 AT4G25810 53.778 225 101 2 3 224 32 256 1.48e-80 243
MS.gene059595.t1 AT4G25820 60.753 186 71 1 3 186 36 221 1.23e-79 241
MS.gene059595.t1 AT4G30270 60.440 182 72 0 6 187 35 216 1.51e-79 240
MS.gene059595.t1 AT4G03210 46.352 233 124 1 4 236 36 267 2.90e-77 235
MS.gene059595.t1 AT5G13870 48.276 232 115 3 2 231 37 265 2.84e-76 233
MS.gene059595.t1 AT5G13870 48.276 232 115 3 2 231 37 265 2.84e-76 233
MS.gene059595.t1 AT5G13870 48.276 232 115 3 2 231 37 265 2.84e-76 233
MS.gene059595.t1 AT2G06850 48.511 235 116 3 4 236 42 273 5.66e-76 232
MS.gene059595.t1 AT5G48070 55.276 199 85 2 14 212 49 243 3.53e-75 229
MS.gene059595.t1 AT4G37800 46.835 237 119 4 3 236 40 272 2.60e-72 222
MS.gene059595.t1 AT4G30290 53.521 213 92 3 3 212 30 238 8.68e-72 220
MS.gene059595.t1 AT2G06850 49.057 212 105 2 25 236 5 213 7.67e-71 217
MS.gene059595.t1 AT4G03210 47.826 207 107 1 30 236 34 239 1.28e-70 217
MS.gene059595.t1 AT4G30280 55.319 188 78 3 26 212 61 243 1.88e-70 217
MS.gene059595.t1 AT5G65730 45.532 235 121 4 5 236 43 273 1.90e-70 218
MS.gene059595.t1 AT4G13090 45.887 231 121 3 3 231 38 266 4.54e-69 214
MS.gene059595.t1 AT1G65310 54.787 188 79 3 26 212 61 243 5.18e-69 214
MS.gene059595.t1 AT1G65310 54.787 188 79 3 26 212 83 265 6.15e-69 214
MS.gene059595.t1 AT2G14620 46.222 225 117 2 1 223 41 263 1.01e-68 213
MS.gene059595.t1 AT3G25050 46.575 219 111 5 3 219 41 255 3.14e-66 207
MS.gene059595.t1 AT2G14620 48.780 205 100 2 19 223 14 213 1.30e-65 204
MS.gene059595.t1 AT2G14620 49.738 191 94 1 33 223 14 202 4.88e-65 202
MS.gene059595.t1 AT1G11545 45.833 216 108 4 3 211 44 257 7.10e-65 204
MS.gene059595.t1 AT4G13080 44.156 231 121 4 3 231 45 269 2.03e-64 202
MS.gene059595.t1 AT3G44990 43.590 195 99 5 5 191 47 238 7.06e-51 167
MS.gene059595.t1 AT2G36870 42.564 195 101 4 5 191 51 242 4.10e-48 160
MS.gene059595.t1 AT1G10550 38.191 199 117 3 5 198 51 248 2.58e-41 143
MS.gene059595.t1 AT1G14720 37.383 214 122 5 5 209 39 249 2.67e-41 144
MS.gene059595.t1 AT3G48580 35.498 231 130 8 2 231 39 251 1.11e-40 140
MS.gene059595.t1 AT2G01850 36.765 204 119 4 13 209 49 249 3.18e-40 141
MS.gene059595.t1 AT1G32170 41.117 197 102 7 5 191 40 232 4.98e-40 140
MS.gene059595.t1 AT4G18990 38.333 180 105 3 17 191 62 240 2.87e-37 134
MS.gene059595.t1 AT3G48580 33.816 207 119 7 25 231 4 192 2.57e-34 122
MS.gene059595.t1 AT2G36870 46.875 128 60 2 5 124 51 178 1.04e-33 120
MS.gene059595.t1 AT4G18990 40.625 128 73 2 66 191 40 166 5.45e-31 115
MS.gene059595.t1 AT3G48580 31.169 231 120 9 2 231 39 231 1.65e-25 100

Find 58 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCCTAAAATGATTGAATT+TGG 0.149775 6.4:-61124676 None:intergenic
ACAAAGATACCATTCTTATT+TGG 0.154842 6.4:+61123257 MS.gene059595:CDS
TGAAAGTTTACACAAGTTTA+TGG 0.162367 6.4:+61124586 MS.gene059595:CDS
TAGTTTCTGAATACCCTAAT+TGG 0.268420 6.4:-61124525 None:intergenic
ACTTTCATTCCTTGCTTGTT+TGG 0.270123 6.4:-61124570 None:intergenic
GAGGACTTGTTAAAACAAAT+TGG 0.276934 6.4:+61124634 MS.gene059595:CDS
CTTTAAATATAGCTTCAAAT+TGG 0.283566 6.4:+61124742 MS.gene059595:CDS
CTTTCATTCCTTGCTTGTTT+GGG 0.284686 6.4:-61124569 None:intergenic
ATATTGATAGCATACCAATT+AGG 0.297472 6.4:+61124511 MS.gene059595:CDS
TTAGGGCAAGAGCTTGTAAA+TGG 0.303223 6.4:+61124691 MS.gene059595:CDS
TGCTCAACATGCATTACTTC+AGG 0.315377 6.4:+61122629 MS.gene059595:CDS
CAATTGGGTTATGCTCAATT+AGG 0.347787 6.4:+61124786 MS.gene059595:CDS
TTCTCCCACATACAAACAAT+TGG 0.357445 6.4:+61124770 MS.gene059595:CDS
CAATTTGATTCGTGATTCAA+TGG 0.364662 6.4:-61123282 None:intergenic
CTTGTGTTGGATAAAACTTC+AGG 0.376738 6.4:+61122666 MS.gene059595:CDS
CATTGAATCACGAATCAAAT+TGG 0.377433 6.4:+61123283 MS.gene059595:CDS
GTTTATGGAATGCAGATGAT+TGG 0.389692 6.4:+61124601 MS.gene059595:CDS
TATAGTTGAACTTACATAGT+AGG 0.393405 6.4:-61123336 None:intergenic
TATTGATAGCATACCAATTA+GGG 0.395983 6.4:+61124512 MS.gene059595:CDS
AATGTATACACACAAGGAAA+TGG 0.402004 6.4:+61123524 MS.gene059595:CDS
GAGTTCTTAGGAAATAGTTC+AGG 0.427126 6.4:+61123479 MS.gene059595:CDS
CCAAAAGCATGTATATTACA+TGG 0.438084 6.4:+61122604 None:intergenic
TAAATATAGCTTCAAATTGG+TGG 0.440874 6.4:+61124745 MS.gene059595:CDS
ATTCTAAGCTTGAGAATGAA+TGG 0.458498 6.4:+61124910 MS.gene059595:CDS
TTCATAACTATACTATCCAT+TGG 0.462357 6.4:+61123594 MS.gene059595:CDS
ATGAACTTACACAATTTCAG+AGG 0.465662 6.4:-61123621 None:intergenic
TTTATGGAATGCAGATGATT+GGG 0.473254 6.4:+61124602 MS.gene059595:CDS
ACATTTGTATGAACAATGTA+TGG 0.480075 6.4:-61123506 None:intergenic
ATAACCCAATTGTTTGTATG+TGG 0.484480 6.4:-61124775 None:intergenic
TTGGTCCCTGGTAATTCTGC+AGG 0.498046 6.4:+61123302 MS.gene059595:CDS
TCTCCCACATACAAACAATT+GGG 0.502606 6.4:+61124771 MS.gene059595:CDS
TTTAACAAGTCCTCCTCTTG+TGG 0.503155 6.4:-61124625 None:intergenic
ATTCAGAAACTATGAAAATG+AGG 0.505200 6.4:+61124536 MS.gene059595:CDS
CTCATCATGTTGGCTTCCTG+TGG 0.509663 6.4:-61123447 None:intergenic
ACTGTTCCTGCAGAATTACC+AGG 0.516135 6.4:-61123308 None:intergenic
TAGTTATGAAAATCAGCAGT+TGG 0.519542 6.4:-61123581 None:intergenic
TCAATGGTTCCAAATAAGAA+TGG 0.531417 6.4:-61123266 None:intergenic
ATCATGTTGGCTTCCTGTGG+AGG 0.534512 6.4:-61123444 None:intergenic
TGAAGATCTCCAACTTGTGT+TGG 0.549817 6.4:+61122653 MS.gene059595:CDS
AGTTATGAAAATCAGCAGTT+GGG 0.554006 6.4:-61123580 None:intergenic
GCTCAACATGCATTACTTCA+GGG 0.554741 6.4:+61122630 MS.gene059595:CDS
CAATTTCAGAGGGGTTCCAA+TGG 0.555959 6.4:-61123610 None:intergenic
AAGCTATATTTAAAGCACAT+TGG 0.557304 6.4:-61124734 None:intergenic
CAAAAGCATGTATATTACAT+GGG 0.559154 6.4:+61122605 None:intergenic
TCACGAATCAAATTGGTCCC+TGG 0.562979 6.4:+61123290 MS.gene059595:CDS
GCAAGAGCTTGTAAATGGAA+TGG 0.563028 6.4:+61124696 MS.gene059595:CDS
CAAAATCTATCTCATCATGT+TGG 0.568146 6.4:-61123457 None:intergenic
TGAACTTACACAATTTCAGA+GGG 0.578731 6.4:-61123620 None:intergenic
TAACCCAATTGTTTGTATGT+GGG 0.583166 6.4:-61124774 None:intergenic
GATGATTGGGCCACAAGAGG+AGG 0.591335 6.4:+61124615 MS.gene059595:CDS
GCAGATGATTGGGCCACAAG+AGG 0.596623 6.4:+61124612 MS.gene059595:CDS
TTCAGAAACTATGAAAATGA+GGG 0.605928 6.4:+61124537 MS.gene059595:CDS
TGTGTGCAGCTATCCTCCAC+AGG 0.610193 6.4:+61123431 MS.gene059595:intron
ATTGCATACCCAAACAAGCA+AGG 0.626861 6.4:+61124561 MS.gene059595:CDS
CATACAAATGTATACACACA+AGG 0.631731 6.4:+61123518 MS.gene059595:CDS
AAAAGCATGTATATTACATG+GGG 0.648450 6.4:+61122606 None:intergenic
CTGTTCCTGCAGAATTACCA+GGG 0.714476 6.4:-61123307 None:intergenic
GAACTTACACAATTTCAGAG+GGG 0.733431 6.4:-61123619 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAATGTATTACAA+AGG - chr6.4:61122776-61122795 None:intergenic 10.0%
!! CATAAATTTAAATTTACATA+AGG + chr6.4:61123374-61123393 MS.gene059595:intron 10.0%
!!! TTGATTAAATTTGTTATTAT+CGG - chr6.4:61123100-61123119 None:intergenic 10.0%
!!! CATATATAAAATTTGAAATG+CGG - chr6.4:61123923-61123942 None:intergenic 15.0%
!!! TGATTAAATTTGTTATTATC+GGG - chr6.4:61123099-61123118 None:intergenic 15.0%
!! AAAAATTTACGTTTAGTTGA+CGG - chr6.4:61123718-61123737 None:intergenic 20.0%
!! AAAATTAGAAAATAAGCATG+AGG + chr6.4:61124321-61124340 MS.gene059595:intron 20.0%
!! AAATTAGAAAATAAGCATGA+GGG + chr6.4:61124322-61124341 MS.gene059595:intron 20.0%
!! ACTTTCTTATAGAAATGAAA+AGG - chr6.4:61124430-61124449 None:intergenic 20.0%
!! CATGATATAAAACATTAGAA+AGG - chr6.4:61124463-61124482 None:intergenic 20.0%
!! CTTTAAATATAGCTTCAAAT+TGG + chr6.4:61124742-61124761 MS.gene059595:CDS 20.0%
!! TCAACTTAACATGAAATATA+TGG + chr6.4:61123198-61123217 MS.gene059595:intron 20.0%
!!! AAACGTAAATTTTTAATACG+TGG + chr6.4:61123724-61123743 MS.gene059595:intron 20.0%
!!! AACGTAAATTTTTAATACGT+GGG + chr6.4:61123725-61123744 MS.gene059595:intron 20.0%
!!! CTTTCTAATGTTTTATATCA+TGG + chr6.4:61124461-61124480 MS.gene059595:intron 20.0%
!!! TCATTTCTATAAGAAAGTAT+TGG + chr6.4:61124432-61124451 MS.gene059595:intron 20.0%
!!! TTAATGTGTCAATTTTGTTT+AGG - chr6.4:61123999-61124018 None:intergenic 20.0%
! ACAAAGATACCATTCTTATT+TGG + chr6.4:61123257-61123276 MS.gene059595:CDS 25.0%
! ACATTTGTATGAACAATGTA+TGG - chr6.4:61123509-61123528 None:intergenic 25.0%
! ACTTAACATGAAATATATGG+TGG + chr6.4:61123201-61123220 MS.gene059595:intron 25.0%
! ATTCAGAAACTATGAAAATG+AGG + chr6.4:61124536-61124555 MS.gene059595:CDS 25.0%
! TAAATATAGCTTCAAATTGG+TGG + chr6.4:61124745-61124764 MS.gene059595:CDS 25.0%
! TATAGTTGAACTTACATAGT+AGG - chr6.4:61123339-61123358 None:intergenic 25.0%
! TCAATTAGGTCAAATGAATT+GGG + chr6.4:61124800-61124819 MS.gene059595:intron 25.0%
! TGAAAGTTTACACAAGTTTA+TGG + chr6.4:61124586-61124605 MS.gene059595:CDS 25.0%
! TTCAGAAACTATGAAAATGA+GGG + chr6.4:61124537-61124556 MS.gene059595:CDS 25.0%
! TTCATAACTATACTATCCAT+TGG + chr6.4:61123594-61123613 MS.gene059595:CDS 25.0%
!! AAATCACAACAATTTTGCTT+TGG - chr6.4:61124172-61124191 None:intergenic 25.0%
!! AAGCTATATTTAAAGCACAT+TGG - chr6.4:61124737-61124756 None:intergenic 25.0%
!! ACGTAAATTTTTAATACGTG+GGG + chr6.4:61123726-61123745 MS.gene059595:intron 25.0%
!! AGCCAAATTCAATCATTTTA+GGG + chr6.4:61124674-61124693 MS.gene059595:CDS 25.0%
!! ATATTGATAGCATACCAATT+AGG + chr6.4:61124511-61124530 MS.gene059595:CDS 25.0%
!! CATTTGACCATTAAATCTTT+TGG - chr6.4:61124867-61124886 None:intergenic 25.0%
!! TAGCCAAATTCAATCATTTT+AGG + chr6.4:61124673-61124692 MS.gene059595:CDS 25.0%
!! TAGTTGTAACTTTGAAAGTT+TGG + chr6.4:61122813-61122832 MS.gene059595:intron 25.0%
!! TATTGATAGCATACCAATTA+GGG + chr6.4:61124512-61124531 MS.gene059595:CDS 25.0%
!! TTTACATTATTTGTTACCAC+AGG + chr6.4:61124484-61124503 MS.gene059595:intron 25.0%
AAACTCTGCTAAGTATTCAT+TGG + chr6.4:61123652-61123671 MS.gene059595:intron 30.0%
AATGTATACACACAAGGAAA+TGG + chr6.4:61123524-61123543 MS.gene059595:CDS 30.0%
ACCAACTGAGTTATGTTAAT+GGG + chr6.4:61123797-61123816 MS.gene059595:intron 30.0%
AGTTATGAAAATCAGCAGTT+GGG - chr6.4:61123583-61123602 None:intergenic 30.0%
ATAACCCAATTGTTTGTATG+TGG - chr6.4:61124778-61124797 None:intergenic 30.0%
ATGAACTTACACAATTTCAG+AGG - chr6.4:61123624-61123643 None:intergenic 30.0%
ATTAACATAACTCAGTTGGT+AGG - chr6.4:61123797-61123816 None:intergenic 30.0%
ATTACCCTTGAATCATATTG+TGG + chr6.4:61122951-61122970 MS.gene059595:intron 30.0%
ATTCTAAGCTTGAGAATGAA+TGG + chr6.4:61124910-61124929 MS.gene059595:CDS 30.0%
CAAAATCTATCTCATCATGT+TGG - chr6.4:61123460-61123479 None:intergenic 30.0%
CATACAAATGTATACACACA+AGG + chr6.4:61123518-61123537 MS.gene059595:CDS 30.0%
CATTGAATCACGAATCAAAT+TGG + chr6.4:61123283-61123302 MS.gene059595:CDS 30.0%
CGTGATACCAAAAGATTTAA+TGG + chr6.4:61124857-61124876 MS.gene059595:intron 30.0%
CTCAATTAGGTCAAATGAAT+TGG + chr6.4:61124799-61124818 MS.gene059595:intron 30.0%
TAACCCAATTGTTTGTATGT+GGG - chr6.4:61124777-61124796 None:intergenic 30.0%
TACCAACTGAGTTATGTTAA+TGG + chr6.4:61123796-61123815 MS.gene059595:intron 30.0%
TAGTTATGAAAATCAGCAGT+TGG - chr6.4:61123584-61123603 None:intergenic 30.0%
TAGTTTCTGAATACCCTAAT+TGG - chr6.4:61124528-61124547 None:intergenic 30.0%
TATCCCACAATATGATTCAA+GGG - chr6.4:61122958-61122977 None:intergenic 30.0%
TCAATGGTTCCAAATAAGAA+TGG - chr6.4:61123269-61123288 None:intergenic 30.0%
TGAAAAAGAGTTCGTTACAT+TGG - chr6.4:61124044-61124063 None:intergenic 30.0%
TGAACTTACACAATTTCAGA+GGG - chr6.4:61123623-61123642 None:intergenic 30.0%
TGATCATTCATTCGTTTGTT+GGG - chr6.4:61123014-61123033 None:intergenic 30.0%
TGCCCTAAAATGATTGAATT+TGG - chr6.4:61124679-61124698 None:intergenic 30.0%
TTACCCTTGAATCATATTGT+GGG + chr6.4:61122952-61122971 MS.gene059595:intron 30.0%
TTGATCATTCATTCGTTTGT+TGG - chr6.4:61123015-61123034 None:intergenic 30.0%
TTGGTGCATCTTTCAATATT+TGG + chr6.4:61122832-61122851 MS.gene059595:intron 30.0%
TTTATGGAATGCAGATGATT+GGG + chr6.4:61124602-61124621 MS.gene059595:CDS 30.0%
! AAGCTAACATTTGAAGCTTT+CGG + chr6.4:61124196-61124215 MS.gene059595:intron 30.0%
! CAATTTGATTCGTGATTCAA+TGG - chr6.4:61123285-61123304 None:intergenic 30.0%
! GAGAGCAACAATTTTATCTT+TGG + chr6.4:61123552-61123571 MS.gene059595:CDS 30.0%
! TTAACATAACTCAGTTGGTA+GGG - chr6.4:61123796-61123815 None:intergenic 30.0%
!! AAGTTTTATCCAACACAAGT+TGG - chr6.4:61122665-61122684 None:intergenic 30.0%
!! GAGGACTTGTTAAAACAAAT+TGG + chr6.4:61124634-61124653 MS.gene059595:CDS 30.0%
!!! GAGATAGATTTTGAGTTCTT+AGG + chr6.4:61123467-61123486 MS.gene059595:CDS 30.0%
AAACTAAACGGGCACTAAAT+CGG - chr6.4:61124113-61124132 None:intergenic 35.0%
AATTGTGCCTTGAAACATTC+AGG - chr6.4:61124893-61124912 None:intergenic 35.0%
ACATGGGTTTATGGAAAAAG+TGG + chr6.4:61124223-61124242 MS.gene059595:intron 35.0%
ACTTTCATTCCTTGCTTGTT+TGG - chr6.4:61124573-61124592 None:intergenic 35.0%
ATGCAAACTCCAAACTAAAC+GGG - chr6.4:61124124-61124143 None:intergenic 35.0%
CAATTGGGTTATGCTCAATT+AGG + chr6.4:61124786-61124805 MS.gene059595:CDS 35.0%
CCAACTGAGTTATGTTAATG+GGG + chr6.4:61123798-61123817 MS.gene059595:intron 35.0%
CTATCCCACAATATGATTCA+AGG - chr6.4:61122959-61122978 None:intergenic 35.0%
CTTGTGTTGGATAAAACTTC+AGG + chr6.4:61122666-61122685 MS.gene059595:CDS 35.0%
CTTTCATTCCTTGCTTGTTT+GGG - chr6.4:61124572-61124591 None:intergenic 35.0%
GAACTTACACAATTTCAGAG+GGG - chr6.4:61123622-61123641 None:intergenic 35.0%
GAATGAATGATCAAGCATGA+AGG + chr6.4:61123021-61123040 MS.gene059595:intron 35.0%
GAGTTCTTAGGAAATAGTTC+AGG + chr6.4:61123479-61123498 MS.gene059595:CDS 35.0%
GATGCAAACTCCAAACTAAA+CGG - chr6.4:61124125-61124144 None:intergenic 35.0%
GTTTATGGAATGCAGATGAT+TGG + chr6.4:61124601-61124620 MS.gene059595:CDS 35.0%
TCTCCCACATACAAACAATT+GGG + chr6.4:61124771-61124790 MS.gene059595:CDS 35.0%
TGAATCATATTGTGGGATAG+CGG + chr6.4:61122959-61122978 MS.gene059595:intron 35.0%
TTCTCCCACATACAAACAAT+TGG + chr6.4:61124770-61124789 MS.gene059595:CDS 35.0%
! ACATTATTTGTTACCACAGG+TGG + chr6.4:61124487-61124506 MS.gene059595:intron 35.0%
! AGCTAACATTTGAAGCTTTC+GGG + chr6.4:61124197-61124216 MS.gene059595:intron 35.0%
AATGCCTCCTGAATGTTTCA+AGG + chr6.4:61124883-61124902 MS.gene059595:intron 40.0%
ATTGCATACCCAAACAAGCA+AGG + chr6.4:61124561-61124580 MS.gene059595:CDS 40.0%
CCCCATTAACATAACTCAGT+TGG - chr6.4:61123801-61123820 None:intergenic 40.0%
GAATCATATTGTGGGATAGC+GGG + chr6.4:61122960-61122979 MS.gene059595:intron 40.0%
GAATGATCAAGCATGAAGGA+CGG + chr6.4:61123025-61123044 MS.gene059595:intron 40.0%
GATTTAGTGCCCGTTTAGTT+TGG + chr6.4:61124112-61124131 MS.gene059595:intron 40.0%
GCAAGAGCTTGTAAATGGAA+TGG + chr6.4:61124696-61124715 MS.gene059595:CDS 40.0%
GCTCAACATGCATTACTTCA+GGG + chr6.4:61122630-61122649 MS.gene059595:CDS 40.0%
TACTGATAAGTAGCTAGCGA+AGG - chr6.4:61123063-61123082 None:intergenic 40.0%
TGAAGATCTCCAACTTGTGT+TGG + chr6.4:61122653-61122672 MS.gene059595:CDS 40.0%
TGCTATCAATATACCACCTG+TGG - chr6.4:61124503-61124522 None:intergenic 40.0%
TGCTCAACATGCATTACTTC+AGG + chr6.4:61122629-61122648 MS.gene059595:CDS 40.0%
TTAGGGCAAGAGCTTGTAAA+TGG + chr6.4:61124691-61124710 MS.gene059595:CDS 40.0%
TTTAACAAGTCCTCCTCTTG+TGG - chr6.4:61124628-61124647 None:intergenic 40.0%
! TTCGGGTTAACATGGGTTTA+TGG + chr6.4:61124214-61124233 MS.gene059595:intron 40.0%
!! TGAAGCTTTCGGGTTAACAT+GGG + chr6.4:61124207-61124226 MS.gene059595:intron 40.0%
!! TGGTGTTACATTTGAATCGC+AGG + chr6.4:61123221-61123240 MS.gene059595:intron 40.0%
!! TTGAAGCTTTCGGGTTAACA+TGG + chr6.4:61124206-61124225 MS.gene059595:intron 40.0%
!! TTTTAATACGTGGGGTGTCT+GGG + chr6.4:61123734-61123753 MS.gene059595:intron 40.0%
!! TTTTTAATACGTGGGGTGTC+TGG + chr6.4:61123733-61123752 MS.gene059595:intron 40.0%
ACTGTTCCTGCAGAATTACC+AGG - chr6.4:61123311-61123330 None:intergenic 45.0%
CAATTTCAGAGGGGTTCCAA+TGG - chr6.4:61123613-61123632 None:intergenic 45.0%
CTGTTCCTGCAGAATTACCA+GGG - chr6.4:61123310-61123329 None:intergenic 45.0%
TCACGAATCAAATTGGTCCC+TGG + chr6.4:61123290-61123309 MS.gene059595:CDS 45.0%
TGTGCCTTGAAACATTCAGG+AGG - chr6.4:61124890-61124909 None:intergenic 45.0%
! TTCGTTTGTTGGGTTGTGAC+CGG - chr6.4:61123004-61123023 None:intergenic 45.0%
! TTTAATACGTGGGGTGTCTG+GGG + chr6.4:61123735-61123754 MS.gene059595:intron 45.0%
!! TTATATAATCTAATTAAATT+TGG - chr6.4:61122726-61122745 None:intergenic 5.0%
!!! TTTAAATTTATGTTATTTAT+TGG - chr6.4:61123366-61123385 None:intergenic 5.0%
ATCCACAAACGCACGTATGC+GGG + chr6.4:61124142-61124161 MS.gene059595:intron 50.0%
CATCCACAAACGCACGTATG+CGG + chr6.4:61124141-61124160 MS.gene059595:intron 50.0%
TTGGTCCCTGGTAATTCTGC+AGG + chr6.4:61123302-61123321 MS.gene059595:CDS 50.0%
! TCGTTTGTTGGGTTGTGACC+GGG - chr6.4:61123003-61123022 None:intergenic 50.0%
!! ATCATGTTGGCTTCCTGTGG+AGG - chr6.4:61123447-61123466 None:intergenic 50.0%
!! CTCATCATGTTGGCTTCCTG+TGG - chr6.4:61123450-61123469 None:intergenic 50.0%
!! TCATATTGTGGGATAGCGGG+AGG + chr6.4:61122963-61122982 MS.gene059595:intron 50.0%
ATCCCGCATACGTGCGTTTG+TGG - chr6.4:61124147-61124166 None:intergenic 55.0%
GATGATTGGGCCACAAGAGG+AGG + chr6.4:61124615-61124634 MS.gene059595:CDS 55.0%
GCAGATGATTGGGCCACAAG+AGG + chr6.4:61124612-61124631 MS.gene059595:CDS 55.0%
TGTGTGCAGCTATCCTCCAC+AGG + chr6.4:61123431-61123450 MS.gene059595:intron 55.0%
! CGTTTGTTGGGTTGTGACCG+GGG - chr6.4:61123002-61123021 None:intergenic 55.0%
! GGTGTCTGGGGTTCGAATTC+TGG + chr6.4:61123747-61123766 MS.gene059595:intron 55.0%
! GTTGGGTTGTGACCGGGGTG+CGG - chr6.4:61122997-61123016 None:intergenic 65.0%
! TTGGGTTGTGACCGGGGTGC+GGG - chr6.4:61122996-61123015 None:intergenic 65.0%
TGGGTTGTGACCGGGGTGCG+GGG - chr6.4:61122995-61123014 None:intergenic 70.0%
GAGGTTTCGCCCCCGCACCC+CGG + chr6.4:61122982-61123001 MS.gene059595:intron 75.0%
GGGTTGTGACCGGGGTGCGG+GGG - chr6.4:61122994-61123013 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 61122612 61124945 61122612 ID=MS.gene059595
chr6.4 mRNA 61122612 61124945 61122612 ID=MS.gene059595.t1;Parent=MS.gene059595
chr6.4 exon 61122612 61122687 61122612 ID=MS.gene059595.t1.exon1;Parent=MS.gene059595.t1
chr6.4 CDS 61122612 61122687 61122612 ID=cds.MS.gene059595.t1;Parent=MS.gene059595.t1
chr6.4 exon 61123243 61123343 61123243 ID=MS.gene059595.t1.exon2;Parent=MS.gene059595.t1
chr6.4 CDS 61123243 61123343 61123243 ID=cds.MS.gene059595.t1;Parent=MS.gene059595.t1
chr6.4 exon 61123440 61123633 61123440 ID=MS.gene059595.t1.exon3;Parent=MS.gene059595.t1
chr6.4 CDS 61123440 61123633 61123440 ID=cds.MS.gene059595.t1;Parent=MS.gene059595.t1
chr6.4 exon 61124506 61124807 61124506 ID=MS.gene059595.t1.exon4;Parent=MS.gene059595.t1
chr6.4 CDS 61124506 61124807 61124506 ID=cds.MS.gene059595.t1;Parent=MS.gene059595.t1
chr6.4 exon 61124905 61124945 61124905 ID=MS.gene059595.t1.exon5;Parent=MS.gene059595.t1
chr6.4 CDS 61124905 61124945 61124905 ID=cds.MS.gene059595.t1;Parent=MS.gene059595.t1
Gene Sequence

>MS.gene059595

ATGTATATTACATGGGGTGCTCAACATGCATTACTTCAGGGTGAAGATCTCCAACTTGTGTTGGATAAAACTTCAGGTAGAATTAAATTTAGTACTTATATATAACTTGCACCAAATTTAATTAGATTATATAAAAAAAAATTAATTAGATTATATGTTTGCCTTTGTAATACATTAAATTTTTATAAAGAAAATAATTTATAGTTGTAACTTTGAAAGTTTGGTGCATCTTTCAATATTTGGCAGTTGAATGTCAAATAAATGAAAGAAATTGTGATTCAAACTTTTTTTATTAATCAAACTTATGTTTTTTTTTTCATTGAAGATTCAGTCTATAATATTACCCTTGAATCATATTGTGGGATAGCGGGAGGTTTCGCCCCCGCACCCCGGTCACAACCCAACAAACGAATGAATGATCAAGCATGAAGGACGGTCACTCTAGCGACCTTCGCTAGCTACTTATCAGTAATTATGAATCATACCCGATAATAACAAATTTAATCAATGTGTTAATTATATATGTAAAAAAAAAATGTGTTAATTATATATTTGAATATAAATAAGTAAATGAATTTTTCTTGTGTCAACTTAACATGAAATATATGGTGGTGTTACATTTGAATCGCAGGATCTGCAGCTCAAACAAAGATACCATTCTTATTTGGAACCATTGAATCACGAATCAAATTGGTCCCTGGTAATTCTGCAGGAACAGTTACAGCCTACTATGTAAGTTCAACTATAAGATCCAATAAATAACATAAATTTAAATTTACATAAGGTAAAAAATATGCTAATGTTTCATTTTCATAAAAATGTGTGCAGCTATCCTCCACAGGAAGCCAACATGATGAGATAGATTTTGAGTTCTTAGGAAATAGTTCAGGACAACCATACATTGTTCATACAAATGTATACACACAAGGAAATGGAAGTAGAGAGCAACAATTTTATCTTTGGTTTGACCCAACTGCTGATTTTCATAACTATACTATCCATTGGAACCCCTCTGAAATTGTGTAAGTTCATAAAATACTAAACTCTGCTAAGTATTCATTGGCTTTAATTTTGATACACTATCATTATAAAGATGTTTTATACCGTCAACTAAACGTAAATTTTTAATACGTGGGGTGTCTGGGGTTCGAATTCTGGCACTTGCATATAACAATACAAGTCCCTACCAACTGAGTTATGTTAATGGGGACTTAAAAATGTTGACTTTAATCTTAATGATCTACATATGATATTTTTTCAATAGTTCAATATATCATATGACATTGTTGTTAACTGATTATTAATGATCCGCATTTCAAATTTTATATATGATTATAATTTTTAAGTGTATTGAAAGATGAAAATTCAGAGTGAAATATATTCTCCTAAACAAAATTGACACATTAACTAAATGTACACTTTAAAGCGACCAATGTAACGAACTCTTTTTCAATTGATTACAAAAGCAAAATATCTAAATAGCTAAATGAGATTGTGTCCGATTTAGTGCCCGTTTAGTTTGGAGTTTGCATCCACAAACGCACGTATGCGGGATTTCCAAAGCAAAATTGTTGTGATTTCTAAAAGCTAACATTTGAAGCTTTCGGGTTAACATGGGTTTATGGAAAAAGTGGTTTGCAAAACGCAGAAGCAAACAAACACTTAAAGATTGATTTGCGAAAAGTCATTAAAATACTACTCACTATGTTAAAATTAGAAAATAAGCATGAGGGATATAGTACTTAAAAATCACATAAAATTATTTGTGATCAGTTGACATTGTAAAATATTATTTTGATAGTGCATATGATTTTTCCTTTTCATTTCTATAAGAAAGTATTGGTTACACCTTTCTAATGTTTTATATCATGGTTTACATTATTTGTTACCACAGGTGGTATATTGATAGCATACCAATTAGGGTATTCAGAAACTATGAAAATGAGGGCATTGCATACCCAAACAAGCAAGGAATGAAAGTTTACACAAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGAGGACTTGTTAAAACAAATTGGACTAATGCAGCATTTGTAGCCAAATTCAATCATTTTAGGGCAAGAGCTTGTAAATGGAATGGAGCAATTAGTATTAACCAATGTGCTTTAAATATAGCTTCAAATTGGTGGACTTCTCCCACATACAAACAATTGGGTTATGCTCAATTAGGTCAAATGAATTGGGTCAGAAATAATTATATATGATCTATGATTATTGTCGTGATACCAAAAGATTTAATGGTCAAATGCCTCCTGAATGTTTCAAGGCACAATTCTAAGCTTGAGAATGAATGGCAAGATTGCCTAA
Protein sequence

>MS.gene059595.t1

MYITWGAQHALLQGEDLQLVLDKTSGSAAQTKIPFLFGTIESRIKLVPGNSAGTVTAYYLSSTGSQHDEIDFEFLGNSSGQPYIVHTNVYTQGNGSREQQFYLWFDPTADFHNYTIHWNPSEIVWYIDSIPIRVFRNYENEGIAYPNKQGMKVYTSLWNADDWATRGGLVKTNWTNAAFVAKFNHFRARACKWNGAISINQCALNIASNWWTSPTYKQLGYAQLGTILSLRMNGKIA