Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011682.t1 | RHN63082.1 | 97.5 | 279 | 7 | 0 | 1 | 279 | 15 | 293 | 4.40E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011682.t1 | Q8LF99 | 77.0 | 265 | 61 | 0 | 11 | 275 | 26 | 290 | 4.3e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011682.t1 | A0A396IC01 | 97.5 | 279 | 7 | 0 | 1 | 279 | 15 | 293 | 3.1e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033759 | MS.gene011682 | PPI |
| MS.gene033758 | MS.gene011682 | PPI |
| MS.gene69030 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene49973 | PPI |
| MS.gene43849 | MS.gene011682 | PPI |
| MS.gene049783 | MS.gene011682 | PPI |
| MS.gene52292 | MS.gene011682 | PPI |
| MS.gene028653 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene66956 | PPI |
| MS.gene43303 | MS.gene011682 | PPI |
| MS.gene72276 | MS.gene011682 | PPI |
| MS.gene069844 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene72238 | PPI |
| MS.gene52294 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene93417 | PPI |
| MS.gene061468 | MS.gene011682 | PPI |
| MS.gene71577 | MS.gene011682 | PPI |
| MS.gene99665 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene042579 | PPI |
| MS.gene011682 | MS.gene72278 | PPI |
| MS.gene52293 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene93839 | PPI |
| MS.gene011682 | MS.gene91400 | PPI |
| MS.gene024330 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene059595 | PPI |
| MS.gene31221 | MS.gene011682 | PPI |
| MS.gene011682 | MS.gene09167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011682.t1 | MTR_4g097640 | 97.849 | 279 | 4 | 1 | 1 | 279 | 15 | 291 | 0.0 | 575 |
| MS.gene011682.t1 | MTR_4g097670 | 97.849 | 279 | 4 | 1 | 1 | 279 | 15 | 291 | 0.0 | 575 |
| MS.gene011682.t1 | MTR_4g097700 | 99.240 | 263 | 2 | 0 | 17 | 279 | 66 | 328 | 0.0 | 558 |
| MS.gene011682.t1 | MTR_7g084770 | 55.253 | 257 | 113 | 2 | 20 | 275 | 32 | 287 | 2.37e-103 | 303 |
| MS.gene011682.t1 | MTR_7g084760 | 52.465 | 284 | 122 | 4 | 4 | 275 | 5 | 287 | 2.61e-103 | 303 |
| MS.gene011682.t1 | MTR_6g033085 | 55.253 | 257 | 113 | 2 | 20 | 275 | 32 | 287 | 4.56e-102 | 300 |
| MS.gene011682.t1 | MTR_6g033055 | 54.475 | 257 | 115 | 2 | 20 | 275 | 32 | 287 | 1.09e-101 | 299 |
| MS.gene011682.t1 | MTR_1g105900 | 51.812 | 276 | 126 | 5 | 3 | 275 | 20 | 291 | 4.67e-101 | 297 |
| MS.gene011682.t1 | MTR_7g084750 | 52.918 | 257 | 119 | 2 | 20 | 275 | 32 | 287 | 2.88e-100 | 295 |
| MS.gene011682.t1 | MTR_4g045853 | 50.883 | 283 | 126 | 5 | 3 | 276 | 11 | 289 | 5.25e-100 | 295 |
| MS.gene011682.t1 | MTR_2g089140 | 50.704 | 284 | 121 | 4 | 2 | 276 | 14 | 287 | 1.10e-99 | 293 |
| MS.gene011682.t1 | MTR_1g105495 | 51.049 | 286 | 127 | 4 | 1 | 275 | 11 | 294 | 1.14e-99 | 294 |
| MS.gene011682.t1 | MTR_4g128410 | 50.365 | 274 | 127 | 6 | 6 | 275 | 12 | 280 | 2.38e-97 | 287 |
| MS.gene011682.t1 | MTR_7g093530 | 47.826 | 276 | 133 | 5 | 6 | 276 | 11 | 280 | 7.36e-94 | 278 |
| MS.gene011682.t1 | MTR_4g126920 | 50.379 | 264 | 120 | 4 | 18 | 275 | 23 | 281 | 1.23e-93 | 278 |
| MS.gene011682.t1 | MTR_8g013055 | 52.308 | 260 | 117 | 5 | 20 | 276 | 31 | 286 | 7.59e-93 | 276 |
| MS.gene011682.t1 | MTR_2g038860 | 45.614 | 285 | 140 | 4 | 3 | 277 | 9 | 288 | 6.22e-92 | 274 |
| MS.gene011682.t1 | MTR_2g038705 | 45.614 | 285 | 140 | 4 | 3 | 277 | 9 | 288 | 6.22e-92 | 274 |
| MS.gene011682.t1 | MTR_4g128400 | 46.494 | 271 | 143 | 2 | 7 | 276 | 15 | 284 | 1.79e-91 | 273 |
| MS.gene011682.t1 | MTR_4g128580 | 49.638 | 276 | 128 | 5 | 5 | 275 | 16 | 285 | 2.83e-91 | 272 |
| MS.gene011682.t1 | MTR_3g084630 | 48.000 | 275 | 135 | 3 | 2 | 275 | 10 | 277 | 3.06e-91 | 272 |
| MS.gene011682.t1 | MTR_3g084620 | 48.000 | 275 | 135 | 3 | 2 | 275 | 10 | 277 | 3.60e-91 | 271 |
| MS.gene011682.t1 | MTR_4g128570 | 47.464 | 276 | 129 | 4 | 1 | 275 | 12 | 272 | 7.45e-90 | 268 |
| MS.gene011682.t1 | MTR_6g088320 | 48.057 | 283 | 136 | 6 | 1 | 278 | 10 | 286 | 9.77e-90 | 268 |
| MS.gene011682.t1 | MTR_2g089140 | 54.667 | 225 | 92 | 2 | 61 | 276 | 1 | 224 | 1.38e-89 | 266 |
| MS.gene011682.t1 | MTR_8g081040 | 48.913 | 276 | 133 | 5 | 1 | 275 | 13 | 281 | 2.07e-89 | 267 |
| MS.gene011682.t1 | MTR_8g102910 | 50.379 | 264 | 123 | 5 | 18 | 276 | 20 | 280 | 2.39e-89 | 267 |
| MS.gene011682.t1 | MTR_8g102220 | 44.565 | 276 | 132 | 5 | 1 | 275 | 11 | 266 | 3.79e-79 | 241 |
| MS.gene011682.t1 | MTR_7g056090 | 47.012 | 251 | 128 | 4 | 18 | 267 | 30 | 276 | 4.46e-79 | 241 |
| MS.gene011682.t1 | MTR_4g128590 | 43.007 | 286 | 132 | 6 | 1 | 275 | 10 | 275 | 1.39e-78 | 239 |
| MS.gene011682.t1 | MTR_5g091730 | 42.754 | 276 | 151 | 3 | 1 | 275 | 9 | 278 | 5.52e-76 | 233 |
| MS.gene011682.t1 | MTR_3g089540 | 45.385 | 260 | 135 | 4 | 18 | 275 | 28 | 282 | 3.63e-72 | 223 |
| MS.gene011682.t1 | MTR_2g049030 | 41.270 | 252 | 139 | 6 | 20 | 269 | 30 | 274 | 1.10e-67 | 212 |
| MS.gene011682.t1 | MTR_2g049130 | 43.443 | 244 | 133 | 5 | 20 | 262 | 29 | 268 | 1.59e-65 | 206 |
| MS.gene011682.t1 | MTR_1g033420 | 38.947 | 285 | 163 | 8 | 1 | 276 | 10 | 292 | 5.48e-58 | 188 |
| MS.gene011682.t1 | MTR_5g029100 | 38.868 | 265 | 152 | 5 | 20 | 275 | 42 | 305 | 1.03e-57 | 188 |
| MS.gene011682.t1 | MTR_4g057450 | 37.970 | 266 | 150 | 7 | 17 | 275 | 47 | 304 | 2.29e-56 | 183 |
| MS.gene011682.t1 | MTR_2g095800 | 35.354 | 297 | 158 | 10 | 2 | 275 | 24 | 309 | 3.37e-55 | 181 |
| MS.gene011682.t1 | MTR_8g064180 | 34.219 | 301 | 170 | 7 | 1 | 275 | 12 | 310 | 3.12e-54 | 178 |
| MS.gene011682.t1 | MTR_5g029100 | 40.948 | 232 | 127 | 5 | 53 | 275 | 44 | 274 | 1.14e-52 | 174 |
| MS.gene011682.t1 | MTR_8g090100 | 36.194 | 268 | 154 | 7 | 20 | 276 | 21 | 282 | 2.24e-52 | 174 |
| MS.gene011682.t1 | MTR_7g102260 | 34.694 | 294 | 162 | 10 | 2 | 275 | 8 | 291 | 1.42e-49 | 166 |
| MS.gene011682.t1 | MTR_1g063020 | 34.589 | 292 | 163 | 8 | 3 | 275 | 12 | 294 | 4.30e-49 | 164 |
| MS.gene011682.t1 | MTR_8g479340 | 37.297 | 185 | 54 | 3 | 93 | 275 | 11 | 135 | 5.36e-32 | 115 |
| MS.gene011682.t1 | MTR_4g097650 | 92.000 | 50 | 2 | 1 | 1 | 50 | 15 | 62 | 6.25e-25 | 95.1 |
| MS.gene011682.t1 | MTR_8g032640 | 32.571 | 175 | 111 | 4 | 41 | 214 | 32 | 200 | 3.86e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011682.t1 | AT5G65730 | 74.638 | 276 | 69 | 1 | 1 | 275 | 15 | 290 | 6.21e-163 | 454 |
| MS.gene011682.t1 | AT4G37800 | 76.404 | 267 | 63 | 0 | 13 | 279 | 27 | 293 | 1.40e-161 | 451 |
| MS.gene011682.t1 | AT4G03210 | 53.597 | 278 | 123 | 3 | 1 | 275 | 10 | 284 | 1.36e-104 | 306 |
| MS.gene011682.t1 | AT5G13870 | 51.246 | 281 | 129 | 3 | 2 | 275 | 8 | 287 | 9.09e-104 | 304 |
| MS.gene011682.t1 | AT5G13870 | 51.246 | 281 | 129 | 3 | 2 | 275 | 8 | 287 | 9.09e-104 | 304 |
| MS.gene011682.t1 | AT5G13870 | 51.246 | 281 | 129 | 3 | 2 | 275 | 8 | 287 | 9.09e-104 | 304 |
| MS.gene011682.t1 | AT2G06850 | 51.064 | 282 | 130 | 3 | 1 | 275 | 10 | 290 | 1.50e-100 | 296 |
| MS.gene011682.t1 | AT1G11545 | 51.056 | 284 | 128 | 5 | 1 | 275 | 18 | 299 | 1.63e-100 | 296 |
| MS.gene011682.t1 | AT2G14620 | 50.542 | 277 | 130 | 4 | 2 | 275 | 22 | 294 | 1.30e-99 | 294 |
| MS.gene011682.t1 | AT4G03210 | 56.175 | 251 | 103 | 3 | 28 | 275 | 10 | 256 | 1.06e-97 | 288 |
| MS.gene011682.t1 | AT5G57550 | 49.281 | 278 | 132 | 5 | 2 | 275 | 10 | 282 | 1.54e-96 | 285 |
| MS.gene011682.t1 | AT3G23730 | 48.746 | 279 | 137 | 4 | 2 | 275 | 9 | 286 | 7.75e-96 | 284 |
| MS.gene011682.t1 | AT5G57560 | 47.552 | 286 | 132 | 5 | 1 | 278 | 9 | 284 | 1.00e-92 | 276 |
| MS.gene011682.t1 | AT2G06850 | 56.388 | 227 | 97 | 2 | 50 | 275 | 5 | 230 | 9.37e-92 | 271 |
| MS.gene011682.t1 | AT4G25810 | 48.540 | 274 | 137 | 4 | 7 | 277 | 13 | 285 | 2.38e-91 | 272 |
| MS.gene011682.t1 | AT4G14130 | 49.618 | 262 | 125 | 4 | 18 | 275 | 26 | 284 | 7.57e-91 | 271 |
| MS.gene011682.t1 | AT4G30270 | 47.985 | 273 | 124 | 6 | 6 | 277 | 12 | 267 | 5.94e-90 | 268 |
| MS.gene011682.t1 | AT4G13090 | 47.482 | 278 | 140 | 4 | 2 | 275 | 13 | 288 | 2.03e-89 | 268 |
| MS.gene011682.t1 | AT5G57530 | 48.669 | 263 | 125 | 5 | 18 | 275 | 25 | 282 | 4.08e-89 | 266 |
| MS.gene011682.t1 | AT5G57540 | 47.909 | 263 | 127 | 5 | 18 | 275 | 24 | 281 | 8.91e-88 | 263 |
| MS.gene011682.t1 | AT5G48070 | 45.977 | 261 | 132 | 6 | 18 | 275 | 27 | 281 | 3.21e-86 | 259 |
| MS.gene011682.t1 | AT2G14620 | 51.754 | 228 | 106 | 3 | 51 | 275 | 18 | 244 | 3.75e-86 | 258 |
| MS.gene011682.t1 | AT4G25820 | 47.529 | 263 | 128 | 4 | 18 | 275 | 28 | 285 | 3.15e-85 | 257 |
| MS.gene011682.t1 | AT2G14620 | 52.036 | 221 | 102 | 3 | 58 | 275 | 14 | 233 | 3.81e-84 | 252 |
| MS.gene011682.t1 | AT2G18800 | 47.037 | 270 | 128 | 4 | 20 | 275 | 28 | 296 | 1.03e-83 | 253 |
| MS.gene011682.t1 | AT4G30290 | 45.683 | 278 | 140 | 7 | 1 | 275 | 7 | 276 | 2.28e-83 | 251 |
| MS.gene011682.t1 | AT4G28850 | 44.326 | 282 | 145 | 5 | 3 | 275 | 9 | 287 | 5.22e-83 | 251 |
| MS.gene011682.t1 | AT3G25050 | 43.463 | 283 | 148 | 5 | 1 | 275 | 11 | 289 | 2.70e-82 | 249 |
| MS.gene011682.t1 | AT4G13080 | 46.094 | 256 | 135 | 3 | 20 | 275 | 39 | 291 | 4.44e-82 | 249 |
| MS.gene011682.t1 | AT4G30280 | 44.245 | 278 | 144 | 7 | 1 | 275 | 12 | 281 | 8.75e-81 | 245 |
| MS.gene011682.t1 | AT1G65310 | 46.360 | 261 | 131 | 6 | 18 | 275 | 27 | 281 | 1.75e-78 | 239 |
| MS.gene011682.t1 | AT1G65310 | 46.360 | 261 | 131 | 6 | 18 | 275 | 49 | 303 | 2.27e-78 | 240 |
| MS.gene011682.t1 | AT1G14720 | 39.649 | 285 | 159 | 9 | 1 | 276 | 11 | 291 | 6.61e-59 | 191 |
| MS.gene011682.t1 | AT1G32170 | 37.063 | 286 | 168 | 7 | 1 | 276 | 11 | 294 | 4.94e-57 | 186 |
| MS.gene011682.t1 | AT2G01850 | 37.234 | 282 | 170 | 6 | 1 | 276 | 11 | 291 | 5.49e-56 | 183 |
| MS.gene011682.t1 | AT1G10550 | 36.047 | 258 | 149 | 6 | 32 | 275 | 54 | 309 | 1.12e-53 | 177 |
| MS.gene011682.t1 | AT3G44990 | 36.330 | 267 | 151 | 6 | 18 | 275 | 37 | 293 | 1.99e-52 | 173 |
| MS.gene011682.t1 | AT3G48580 | 37.786 | 262 | 143 | 8 | 18 | 277 | 32 | 275 | 4.91e-52 | 171 |
| MS.gene011682.t1 | AT4G18990 | 35.484 | 279 | 159 | 6 | 17 | 276 | 37 | 313 | 1.62e-51 | 172 |
| MS.gene011682.t1 | AT2G36870 | 35.985 | 264 | 152 | 8 | 20 | 275 | 43 | 297 | 1.72e-49 | 166 |
| MS.gene011682.t1 | AT3G48580 | 38.696 | 230 | 122 | 7 | 50 | 277 | 4 | 216 | 1.32e-46 | 155 |
| MS.gene011682.t1 | AT4G18990 | 37.500 | 200 | 106 | 5 | 94 | 276 | 42 | 239 | 7.90e-41 | 142 |
| MS.gene011682.t1 | AT3G48580 | 33.588 | 262 | 134 | 9 | 18 | 277 | 32 | 255 | 9.78e-37 | 131 |
| MS.gene011682.t1 | AT2G36870 | 41.304 | 138 | 72 | 4 | 20 | 150 | 43 | 178 | 6.47e-27 | 103 |
Find 63 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATCAATTTGCTTGATA+TGG | 0.190810 | 8.3:+22657491 | None:intergenic |
| CGTATCATCTGTTTCTGTTT+GGG | 0.194268 | 8.3:-22657563 | MS.gene011682:CDS |
| CATTATGGGAAGCTGATAAT+TGG | 0.203518 | 8.3:-22654254 | MS.gene011682:CDS |
| ACCCCACATGAGTGTCTTTC+AGG | 0.215363 | 8.3:-22653988 | MS.gene011682:CDS |
| TTGTTCTTGTATACTCTAAT+AGG | 0.231975 | 8.3:+22654330 | None:intergenic |
| TCCACACTTACTCCATTCTT+TGG | 0.237903 | 8.3:-22656939 | MS.gene011682:CDS |
| GTGGATTAGAGAAAATTAAT+TGG | 0.259471 | 8.3:-22654221 | MS.gene011682:CDS |
| GAGAACAAAGAGTTAATCTT+TGG | 0.282944 | 8.3:-22656981 | MS.gene011682:CDS |
| ATATTCGTTTGAACTGTATA+TGG | 0.285858 | 8.3:+22657027 | None:intergenic |
| ATTTATTTACTTACACAATA+TGG | 0.286878 | 8.3:+22656908 | None:intergenic |
| TCGTATCATCTGTTTCTGTT+TGG | 0.321766 | 8.3:-22657564 | MS.gene011682:CDS |
| GAGTTCTTGGGGAACCGTAC+TGG | 0.332417 | 8.3:-22657054 | MS.gene011682:CDS |
| AAGTCTTGATTAAAAGTTGC+TGG | 0.378416 | 8.3:+22657535 | None:intergenic |
| TTGATCAATTTGCTTGATAT+GGG | 0.378785 | 8.3:+22657492 | None:intergenic |
| AGACACTCATGTGGGGTCAT+TGG | 0.379857 | 8.3:+22653994 | None:intergenic |
| GCTTACCAGAGCCTTGGTCT+AGG | 0.393896 | 8.3:+22657449 | None:intergenic |
| GACACTCATGTGGGGTCATT+GGG | 0.402289 | 8.3:+22653995 | None:intergenic |
| GGGTTAGTGGCACATGTAGT+TGG | 0.414336 | 8.3:+22654135 | None:intergenic |
| TCCAAGGTGAAGTACTTGTT+TGG | 0.422327 | 8.3:-22657275 | MS.gene011682:CDS |
| ATTGAAGGATGTGCAATTCC+AGG | 0.423415 | 8.3:-22654159 | MS.gene011682:CDS |
| CAAACGAATATTTATGCTCA+TGG | 0.438237 | 8.3:-22657015 | MS.gene011682:CDS |
| CCTATACCTTCTAGCTTCAA+TGG | 0.438940 | 8.3:+22654071 | None:intergenic |
| TACAAGAACAATGAAGCAAA+AGG | 0.440360 | 8.3:-22654318 | MS.gene011682:CDS |
| ATTATGGGAAGCTGATAATT+GGG | 0.454763 | 8.3:-22654253 | MS.gene011682:CDS |
| AGGTTGCGGGTTTGCTTCCA+AGG | 0.460427 | 8.3:-22657291 | MS.gene011682:CDS |
| AATATTTATGCTCATGGAAA+GGG | 0.474052 | 8.3:-22657009 | MS.gene011682:CDS |
| AGTTCTTGGGGAACCGTACT+GGG | 0.477887 | 8.3:-22657053 | MS.gene011682:CDS |
| GTGGCACATGTAGTTGGTCC+TGG | 0.486861 | 8.3:+22654141 | None:intergenic |
| AGCCTTGGTCTAGGGTAAGT+TGG | 0.505926 | 8.3:+22657458 | None:intergenic |
| ACCTTTCTATGCTTATTACA+AGG | 0.510047 | 8.3:-22654190 | MS.gene011682:CDS |
| TTAGTGCCATTGAAGCTAGA+AGG | 0.511286 | 8.3:-22654077 | MS.gene011682:CDS |
| CTTACCAGAGCCTTGGTCTA+GGG | 0.512113 | 8.3:+22657450 | None:intergenic |
| TATGTTGCTTACCAGAGCCT+TGG | 0.521244 | 8.3:+22657443 | None:intergenic |
| ATGGTGATGATTCCAAAGAA+TGG | 0.527370 | 8.3:+22656927 | None:intergenic |
| ACTATTGTCATGATAAATCA+AGG | 0.531407 | 8.3:-22654020 | MS.gene011682:CDS |
| GAATATTTATGCTCATGGAA+AGG | 0.532200 | 8.3:-22657010 | MS.gene011682:CDS |
| CATATCAAGCAAATTGATCA+AGG | 0.537805 | 8.3:-22657490 | MS.gene011682:CDS |
| CTTGTCCCTGGAGATTCTGC+TGG | 0.538897 | 8.3:-22657230 | MS.gene011682:CDS |
| CTGTATATGGTTGCCCAGTA+CGG | 0.540632 | 8.3:+22657040 | None:intergenic |
| GTATCATCTGTTTCTGTTTG+GGG | 0.541924 | 8.3:-22657562 | MS.gene011682:CDS |
| CCATTGAAGCTAGAAGGTAT+AGG | 0.547043 | 8.3:-22654071 | MS.gene011682:CDS |
| TGATCAATTTGCTTGATATG+GGG | 0.550945 | 8.3:+22657493 | None:intergenic |
| ACAGTACCAGCAGAATCTCC+AGG | 0.553960 | 8.3:+22657224 | None:intergenic |
| ACAAGAACAATGAAGCAAAA+GGG | 0.563731 | 8.3:-22654317 | MS.gene011682:CDS |
| TCCAAAGAATGGAGTAAGTG+TGG | 0.566544 | 8.3:+22656938 | None:intergenic |
| TCCTTGTAATAAGCATAGAA+AGG | 0.566971 | 8.3:+22654189 | None:intergenic |
| TGACAGTGTTCGTGATGAGT+TGG | 0.575375 | 8.3:-22657082 | MS.gene011682:CDS |
| GATAATTGGGCAACAAGAGG+TGG | 0.576591 | 8.3:-22654240 | MS.gene011682:CDS |
| TTGAAGCTAGAAGGTATAGG+TGG | 0.577676 | 8.3:-22654068 | MS.gene011682:CDS |
| ATGAAGATTAAACTTGTCCC+TGG | 0.582730 | 8.3:-22657242 | MS.gene011682:CDS |
| TAATGTTGAAAATACTCCCA+TGG | 0.606737 | 8.3:+22654272 | None:intergenic |
| ACCAAACAAGTACTTCACCT+TGG | 0.609031 | 8.3:+22657274 | None:intergenic |
| TGCCTGAAAGACACTCATGT+GGG | 0.615126 | 8.3:+22653986 | None:intergenic |
| ATCAAGACTTTCATGTCACG+TGG | 0.617056 | 8.3:-22657522 | MS.gene011682:CDS |
| CTTACCCTAGACCAAGGCTC+TGG | 0.621562 | 8.3:-22657454 | MS.gene011682:intron |
| GACAATAGTCATAGATCACA+TGG | 0.636935 | 8.3:+22654034 | None:intergenic |
| GCTGATAATTGGGCAACAAG+AGG | 0.638048 | 8.3:-22654243 | MS.gene011682:CDS |
| TGAAGCTAGAAGGTATAGGT+GGG | 0.659236 | 8.3:-22654067 | MS.gene011682:CDS |
| GCCTGAAAGACACTCATGTG+GGG | 0.659861 | 8.3:+22653987 | None:intergenic |
| ATGCCTGAAAGACACTCATG+TGG | 0.662116 | 8.3:+22653985 | None:intergenic |
| TAAGTGTGGAAATCAGCAGA+AGG | 0.663556 | 8.3:+22656952 | None:intergenic |
| CAGTACCAGCAGAATCTCCA+GGG | 0.665682 | 8.3:+22657225 | None:intergenic |
| ATCCAACTTACCCTAGACCA+AGG | 0.669978 | 8.3:-22657460 | MS.gene011682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAAAAAAAATAAT+TGG | - | chr8.3:22654999-22655018 | MS.gene011682:intron | 0.0% |
| !! | AATACTGTATTAATAAAATT+TGG | - | chr8.3:22654201-22654220 | MS.gene011682:CDS | 10.0% |
| !! | ATAAATTAAACCATATTAAA+TGG | - | chr8.3:22655444-22655463 | MS.gene011682:intron | 10.0% |
| !! | CTGTTAATAAAAATAAATAT+AGG | - | chr8.3:22654730-22654749 | MS.gene011682:intron | 10.0% |
| !! | TAAAAAAAAAAAACTTAAGT+TGG | + | chr8.3:22655528-22655547 | None:intergenic | 10.0% |
| !!! | ACATTTTTTTTTTCATTTTT+AGG | - | chr8.3:22656764-22656783 | MS.gene011682:intron | 10.0% |
| !!! | ATTTTTTTTATAGTTTAGTA+TGG | + | chr8.3:22655426-22655445 | None:intergenic | 10.0% |
| !!! | CTTTTTTTAATTTTTTTTAG+GGG | + | chr8.3:22655112-22655131 | None:intergenic | 10.0% |
| !!! | TAAATATATTTTTGTTTTTG+TGG | - | chr8.3:22654442-22654461 | MS.gene011682:intron | 10.0% |
| !!! | TAATACTTATAATTTTTTCT+TGG | - | chr8.3:22655174-22655193 | MS.gene011682:intron | 10.0% |
| !!! | TTGAAATTAGTTTTAAATAA+TGG | - | chr8.3:22655307-22655326 | MS.gene011682:intron | 10.0% |
| !!! | TTTTTCAATCTAAATTAAAA+TGG | + | chr8.3:22656109-22656128 | None:intergenic | 10.0% |
| !! | ACATGTAGTAAAAAAAAATA+TGG | - | chr8.3:22655041-22655060 | MS.gene011682:intron | 15.0% |
| !! | ACATTATGCAATTATATTTA+TGG | + | chr8.3:22656469-22656488 | None:intergenic | 15.0% |
| !! | ATTTATTTACTTACACAATA+TGG | + | chr8.3:22654659-22654678 | None:intergenic | 15.0% |
| !! | CATGTAGTAAAAAAAAATAT+GGG | - | chr8.3:22655042-22655061 | MS.gene011682:intron | 15.0% |
| !! | CATTATGCAATTATATTTAT+GGG | + | chr8.3:22656468-22656487 | None:intergenic | 15.0% |
| !! | TAAAAGTAAAAGAAATGTAT+AGG | - | chr8.3:22656984-22657003 | MS.gene011682:CDS | 15.0% |
| !!! | AATATAGGGTAATTTTAATT+TGG | - | chr8.3:22654745-22654764 | MS.gene011682:intron | 15.0% |
| !!! | AATTTTTTTGTTCAAATAGA+TGG | - | chr8.3:22656579-22656598 | MS.gene011682:intron | 15.0% |
| !!! | ATAATAAAGTTTTGAACATT+AGG | + | chr8.3:22654161-22654180 | None:intergenic | 15.0% |
| !!! | TGAATTTTATTAGTTTTGTA+TGG | - | chr8.3:22655256-22655275 | MS.gene011682:intron | 15.0% |
| !!! | TGCTTATATTTTTTTTTTGA+AGG | + | chr8.3:22654697-22654716 | None:intergenic | 15.0% |
| !! | AATACATGTAATTATTGCAT+TGG | - | chr8.3:22655999-22656018 | MS.gene011682:intron | 20.0% |
| !! | AATCTATATGGTAGAAAAAA+TGG | - | chr8.3:22656400-22656419 | MS.gene011682:intron | 20.0% |
| !! | AGTATTTGTGATAGATAAAT+AGG | + | chr8.3:22654240-22654259 | None:intergenic | 20.0% |
| !! | AGTTTATGAACCATTTAATA+TGG | + | chr8.3:22655457-22655476 | None:intergenic | 20.0% |
| !! | ATTTACCATGAATTTAAATG+TGG | + | chr8.3:22656842-22656861 | None:intergenic | 20.0% |
| !! | GTTTAGTAGCTATAAATTTA+AGG | + | chr8.3:22656957-22656976 | None:intergenic | 20.0% |
| !! | TAAATATTTATTAACCGTGA+CGG | + | chr8.3:22655228-22655247 | None:intergenic | 20.0% |
| !! | TATCTTTCTAATAAAGAGTA+GGG | + | chr8.3:22654397-22654416 | None:intergenic | 20.0% |
| !! | TTATCTTTCTAATAAAGAGT+AGG | + | chr8.3:22654398-22654417 | None:intergenic | 20.0% |
| !! | TTGATAAACAAAATGACAAT+AGG | - | chr8.3:22655197-22655216 | MS.gene011682:intron | 20.0% |
| !! | TTTAGTGAAGAAATTAAAGA+TGG | + | chr8.3:22657034-22657053 | None:intergenic | 20.0% |
| !!! | AAATACTTAACTTTTTGGAA+AGG | - | chr8.3:22654253-22654272 | MS.gene011682:CDS | 20.0% |
| !!! | AATAACGTGCTTTTTTAATT+TGG | - | chr8.3:22655914-22655933 | MS.gene011682:intron | 20.0% |
| !!! | ATCACAAATACTTAACTTTT+TGG | - | chr8.3:22654248-22654267 | MS.gene011682:CDS | 20.0% |
| !!! | ATTTTGCTGAAAAAAATTAG+TGG | - | chr8.3:22654952-22654971 | MS.gene011682:intron | 20.0% |
| !!! | TATAAATTTAAGGTGGATAT+GGG | + | chr8.3:22656947-22656966 | None:intergenic | 20.0% |
| !!! | TATCTACGTCATTTTTTTTA+AGG | + | chr8.3:22655088-22655107 | None:intergenic | 20.0% |
| !!! | TCATAAATATTTGCTACTTA+TGG | + | chr8.3:22655978-22655997 | None:intergenic | 20.0% |
| !!! | TGTTTTTAGTTCAAGTTTTT+CGG | - | chr8.3:22655703-22655722 | MS.gene011682:intron | 20.0% |
| !!! | TTTGTATGGTTTTTTTTTTC+AGG | - | chr8.3:22655270-22655289 | MS.gene011682:intron | 20.0% |
| !!! | TTTGTTATCTTCACTATATA+TGG | - | chr8.3:22656602-22656621 | MS.gene011682:intron | 20.0% |
| !!! | TTTTGCTGAAAAAAATTAGT+GGG | - | chr8.3:22654953-22654972 | MS.gene011682:intron | 20.0% |
| ! | AAATATTTATTAACCGTGAC+GGG | + | chr8.3:22655227-22655246 | None:intergenic | 25.0% |
| ! | AAATGTGGTTAACCATAATA+GGG | + | chr8.3:22656827-22656846 | None:intergenic | 25.0% |
| ! | AAGTTGAACAAAGAAATACT+CGG | - | chr8.3:22655814-22655833 | MS.gene011682:intron | 25.0% |
| ! | AATATTTATGCTCATGGAAA+GGG | - | chr8.3:22654555-22654574 | MS.gene011682:intron | 25.0% |
| ! | AATTTGTATCCAAGATAAGA+AGG | - | chr8.3:22656689-22656708 | MS.gene011682:intron | 25.0% |
| ! | ACTATTGTCATGATAAATCA+AGG | - | chr8.3:22657544-22657563 | MS.gene011682:CDS | 25.0% |
| ! | ATATTCGTTTGAACTGTATA+TGG | + | chr8.3:22654540-22654559 | None:intergenic | 25.0% |
| ! | GATCAATGTTTGGAAAAAAT+TGG | + | chr8.3:22654799-22654818 | None:intergenic | 25.0% |
| ! | GTTAACCACATTTAAATTCA+TGG | - | chr8.3:22656834-22656853 | MS.gene011682:intron | 25.0% |
| ! | TAAATGTGGTTAACCATAAT+AGG | + | chr8.3:22656828-22656847 | None:intergenic | 25.0% |
| ! | TAGTAGCTATAAATTTAAGG+TGG | + | chr8.3:22656954-22656973 | None:intergenic | 25.0% |
| ! | TGTGGATGATATAATCTATA+TGG | - | chr8.3:22656388-22656407 | MS.gene011682:intron | 25.0% |
| ! | TTGTTCTTGTATACTCTAAT+AGG | + | chr8.3:22657237-22657256 | None:intergenic | 25.0% |
| !! | AAAAAATTAGTGGGTCAATA+TGG | - | chr8.3:22654962-22654981 | MS.gene011682:intron | 25.0% |
| !! | AAAAATTAGTGGGTCAATAT+GGG | - | chr8.3:22654963-22654982 | MS.gene011682:intron | 25.0% |
| !! | ATATAATTGATGGTTGGATT+TGG | - | chr8.3:22656341-22656360 | MS.gene011682:intron | 25.0% |
| !! | CTATAAATTTAAGGTGGATA+TGG | + | chr8.3:22656948-22656967 | None:intergenic | 25.0% |
| !! | TTGATCAATTTGCTTGATAT+GGG | + | chr8.3:22654075-22654094 | None:intergenic | 25.0% |
| !!! | AAGCACGTTATTTTATAAAG+TGG | + | chr8.3:22655906-22655925 | None:intergenic | 25.0% |
| !!! | ACATTTCTTTTACTTTTACC+TGG | + | chr8.3:22656982-22657001 | None:intergenic | 25.0% |
| !!! | AGCACGTTATTTTATAAAGT+GGG | + | chr8.3:22655905-22655924 | None:intergenic | 25.0% |
| !!! | GTGGATTAGAGAAAATTAAT+TGG | - | chr8.3:22657343-22657362 | MS.gene011682:intron | 25.0% |
| !!! | TACAAGGATTTTGATATTGA+AGG | - | chr8.3:22657390-22657409 | MS.gene011682:intron | 25.0% |
| !!! | TGTCTTATTTGATCAATGTT+TGG | + | chr8.3:22654809-22654828 | None:intergenic | 25.0% |
| !!! | TTAAGTTGGTTCACTTAATA+AGG | + | chr8.3:22655514-22655533 | None:intergenic | 25.0% |
| AAAGTGGGACATTCTATATT+GGG | + | chr8.3:22655890-22655909 | None:intergenic | 30.0% | |
| AAGTCTTGATTAAAAGTTGC+TGG | + | chr8.3:22654032-22654051 | None:intergenic | 30.0% | |
| ACAAGAACAATGAAGCAAAA+GGG | - | chr8.3:22657247-22657266 | MS.gene011682:CDS | 30.0% | |
| ACCTTTCTATGCTTATTACA+AGG | - | chr8.3:22657374-22657393 | MS.gene011682:intron | 30.0% | |
| ATTATGGGAAGCTGATAATT+GGG | - | chr8.3:22657311-22657330 | MS.gene011682:intron | 30.0% | |
| CAAACGAATATTTATGCTCA+TGG | - | chr8.3:22654549-22654568 | MS.gene011682:intron | 30.0% | |
| CATATCAAGCAAATTGATCA+AGG | - | chr8.3:22654074-22654093 | MS.gene011682:CDS | 30.0% | |
| GAAATTAAAGATGGTTGGAT+TGG | + | chr8.3:22657025-22657044 | None:intergenic | 30.0% | |
| GAATATTTATGCTCATGGAA+AGG | - | chr8.3:22654554-22654573 | MS.gene011682:intron | 30.0% | |
| GAGAACAAAGAGTTAATCTT+TGG | - | chr8.3:22654583-22654602 | MS.gene011682:intron | 30.0% | |
| GTGAAGAAATTAAAGATGGT+TGG | + | chr8.3:22657030-22657049 | None:intergenic | 30.0% | |
| GTTAGAGATGTGCAAAAATA+TGG | - | chr8.3:22655386-22655405 | MS.gene011682:intron | 30.0% | |
| TAAAGTGGGACATTCTATAT+TGG | + | chr8.3:22655891-22655910 | None:intergenic | 30.0% | |
| TAATGTTGAAAATACTCCCA+TGG | + | chr8.3:22657111-22657130 | None:intergenic | 30.0% | |
| TACAAGAACAATGAAGCAAA+AGG | - | chr8.3:22657246-22657265 | MS.gene011682:CDS | 30.0% | |
| TACATAATACATGCAGTGTT+GGG | - | chr8.3:22656902-22656921 | MS.gene011682:intron | 30.0% | |
| TCCTTGTAATAAGCATAGAA+AGG | + | chr8.3:22657378-22657397 | None:intergenic | 30.0% | |
| TTAAAAAAGAGAATGCAGAG+AGG | - | chr8.3:22656303-22656322 | MS.gene011682:intron | 30.0% | |
| TTACATAATACATGCAGTGT+TGG | - | chr8.3:22656901-22656920 | MS.gene011682:intron | 30.0% | |
| TTTACGTTTCCTTCTTATCT+TGG | + | chr8.3:22656701-22656720 | None:intergenic | 30.0% | |
| TTTATAGCTACTAAACTACC+AGG | - | chr8.3:22656961-22656980 | MS.gene011682:CDS | 30.0% | |
| ! | AGAGAGATATAATTGATGGT+TGG | - | chr8.3:22656335-22656354 | MS.gene011682:intron | 30.0% |
| ! | CATTATGGGAAGTTTTCAAA+TGG | - | chr8.3:22657126-22657145 | MS.gene011682:intron | 30.0% |
| ! | CTTGATCAATTTGCTTGATA+TGG | + | chr8.3:22654076-22654095 | None:intergenic | 30.0% |
| ! | TAGACTATGTTAAGGTTTTG+TGG | - | chr8.3:22656370-22656389 | MS.gene011682:intron | 30.0% |
| ! | TGATCAATTTGCTTGATATG+GGG | + | chr8.3:22654074-22654093 | None:intergenic | 30.0% |
| !! | TTAACTTTTTGGAAAGGTTG+CGG | - | chr8.3:22654259-22654278 | MS.gene011682:CDS | 30.0% |
| !!! | GGGAGTATTTTCAACATTAT+GGG | - | chr8.3:22657112-22657131 | MS.gene011682:intron | 30.0% |
| !!! | TGGGAGTATTTTCAACATTA+TGG | - | chr8.3:22657111-22657130 | MS.gene011682:intron | 30.0% |
| AAAACCTTGAATACACATGC+AGG | - | chr8.3:22657193-22657212 | MS.gene011682:intron | 35.0% | |
| AAGTGGGACATTCTATATTG+GGG | + | chr8.3:22655889-22655908 | None:intergenic | 35.0% | |
| AAGTTTGCATGTCCCTATTA+TGG | - | chr8.3:22656812-22656831 | MS.gene011682:intron | 35.0% | |
| AATTTGGACCAGTGAATGTT+TGG | - | chr8.3:22654761-22654780 | MS.gene011682:intron | 35.0% | |
| ACATGCAAACTTGTACCTTT+AGG | + | chr8.3:22656804-22656823 | None:intergenic | 35.0% | |
| ATCGTAAAAGATGCAAACCA+TGG | - | chr8.3:22657091-22657110 | MS.gene011682:CDS | 35.0% | |
| ATGAAGATTAAACTTGTCCC+TGG | - | chr8.3:22654322-22654341 | MS.gene011682:CDS | 35.0% | |
| ATTTGGACCAGTGAATGTTT+GGG | - | chr8.3:22654762-22654781 | MS.gene011682:intron | 35.0% | |
| CACTAACCCAAAAAATTGGT+GGG | - | chr8.3:22657443-22657462 | MS.gene011682:intron | 35.0% | |
| CATGCAAACTTGTACCTTTA+GGG | + | chr8.3:22656803-22656822 | None:intergenic | 35.0% | |
| CATTATGGGAAGCTGATAAT+TGG | - | chr8.3:22657310-22657329 | MS.gene011682:intron | 35.0% | |
| GACAATAGTCATAGATCACA+TGG | + | chr8.3:22657533-22657552 | None:intergenic | 35.0% | |
| GACGAGAGAGATATAATTGA+TGG | - | chr8.3:22656331-22656350 | MS.gene011682:intron | 35.0% | |
| GGTGTGTATAGACTATGTTA+AGG | - | chr8.3:22656362-22656381 | MS.gene011682:intron | 35.0% | |
| GTAGAAAAAATGGTCCAACT+TGG | - | chr8.3:22656410-22656429 | MS.gene011682:intron | 35.0% | |
| TCGTAAAAGATGCAAACCAT+GGG | - | chr8.3:22657092-22657111 | MS.gene011682:CDS | 35.0% | |
| TGGAAAAAATTGGTCCAAGT+TGG | + | chr8.3:22654789-22654808 | None:intergenic | 35.0% | |
| TTTATAGTAGTCCAACTGCA+CGG | - | chr8.3:22654836-22654855 | MS.gene011682:intron | 35.0% | |
| ! | AAATTTAAGGTGGATATGGG+AGG | + | chr8.3:22656944-22656963 | None:intergenic | 35.0% |
| ! | ATGGTGATGATTCCAAAGAA+TGG | + | chr8.3:22654640-22654659 | None:intergenic | 35.0% |
| !! | CGTATCATCTGTTTCTGTTT+GGG | - | chr8.3:22654001-22654020 | MS.gene011682:CDS | 35.0% |
| !! | GTATCATCTGTTTCTGTTTG+GGG | - | chr8.3:22654002-22654021 | MS.gene011682:CDS | 35.0% |
| !! | TAACTTTTTGGAAAGGTTGC+GGG | - | chr8.3:22654260-22654279 | MS.gene011682:CDS | 35.0% |
| !! | TACCTTTAGGGTACAAGTTA+AGG | + | chr8.3:22656791-22656810 | None:intergenic | 35.0% |
| !! | TCGTATCATCTGTTTCTGTT+TGG | - | chr8.3:22654000-22654019 | MS.gene011682:CDS | 35.0% |
| !!! | AGTTGGATTTTGAGTTCTTG+GGG | - | chr8.3:22654499-22654518 | MS.gene011682:intron | 35.0% |
| !!! | CGCAGATTTTAAGTTGAACA+AGG | - | chr8.3:22655766-22655785 | MS.gene011682:intron | 35.0% |
| !!! | GAGTTGGATTTTGAGTTCTT+GGG | - | chr8.3:22654498-22654517 | MS.gene011682:intron | 35.0% |
| !!! | TGAGTTGGATTTTGAGTTCT+TGG | - | chr8.3:22654497-22654516 | MS.gene011682:intron | 35.0% |
| AACCCAAAAAATTGGTGGGA+AGG | - | chr8.3:22657447-22657466 | MS.gene011682:intron | 40.0% | |
| AAGCTCAAGGTTGAATTTGG+TGG | - | chr8.3:22656230-22656249 | MS.gene011682:intron | 40.0% | |
| ACCAAACAAGTACTTCACCT+TGG | + | chr8.3:22654293-22654312 | None:intergenic | 40.0% | |
| ACCCAAAAAATTGGTGGGAA+GGG | - | chr8.3:22657448-22657467 | MS.gene011682:intron | 40.0% | |
| AGAACCTGCATGTGTATTCA+AGG | + | chr8.3:22657200-22657219 | None:intergenic | 40.0% | |
| AGAGAATAATTCCGTGCAGT+TGG | + | chr8.3:22654850-22654869 | None:intergenic | 40.0% | |
| ATACCCAAAAATGCAAGCCA+TGG | - | chr8.3:22657275-22657294 | MS.gene011682:CDS | 40.0% | |
| ATCAAGACTTTCATGTCACG+TGG | - | chr8.3:22654042-22654061 | MS.gene011682:CDS | 40.0% | |
| ATTGAAGGATGTGCAATTCC+AGG | - | chr8.3:22657405-22657424 | MS.gene011682:intron | 40.0% | |
| CCACTAACCCAAAAAATTGG+TGG | - | chr8.3:22657442-22657461 | MS.gene011682:intron | 40.0% | |
| GCACATCTCTAACTCATATC+AGG | + | chr8.3:22655379-22655398 | None:intergenic | 40.0% | |
| GTCAAGCTCAAGGTTGAATT+TGG | - | chr8.3:22656227-22656246 | MS.gene011682:intron | 40.0% | |
| TAAGTGTGGAAATCAGCAGA+AGG | + | chr8.3:22654615-22654634 | None:intergenic | 40.0% | |
| TACCCAAAAATGCAAGCCAT+GGG | - | chr8.3:22657276-22657295 | MS.gene011682:CDS | 40.0% | |
| TCCAAAGAATGGAGTAAGTG+TGG | + | chr8.3:22654629-22654648 | None:intergenic | 40.0% | |
| TCCACACTTACTCCATTCTT+TGG | - | chr8.3:22654625-22654644 | MS.gene011682:intron | 40.0% | |
| ! | CCATTGAAGCTAGAAGGTAT+AGG | - | chr8.3:22657493-22657512 | MS.gene011682:CDS | 40.0% |
| ! | GTGCCACTAACCCAAAAAAT+TGG | - | chr8.3:22657439-22657458 | MS.gene011682:intron | 40.0% |
| ! | TCCAAGGTGAAGTACTTGTT+TGG | - | chr8.3:22654289-22654308 | MS.gene011682:CDS | 40.0% |
| ! | TGAAGCTAGAAGGTATAGGT+GGG | - | chr8.3:22657497-22657516 | MS.gene011682:CDS | 40.0% |
| ! | TTAGTGCCATTGAAGCTAGA+AGG | - | chr8.3:22657487-22657506 | MS.gene011682:CDS | 40.0% |
| ! | TTGAAGCTAGAAGGTATAGG+TGG | - | chr8.3:22657496-22657515 | MS.gene011682:CDS | 40.0% |
| !! | CCTATACCTTCTAGCTTCAA+TGG | + | chr8.3:22657496-22657515 | None:intergenic | 40.0% |
| !! | GTCCTTAACTTGTACCCTAA+AGG | - | chr8.3:22656786-22656805 | MS.gene011682:intron | 40.0% |
| !!! | ATGGCTTGCATTTTTGGGTA+TGG | + | chr8.3:22657276-22657295 | None:intergenic | 40.0% |
| !!! | CCACCAATTTTTTGGGTTAG+TGG | + | chr8.3:22657445-22657464 | None:intergenic | 40.0% |
| AAAATGTTAACGAGTGCCCC+CGG | - | chr8.3:22655937-22655956 | MS.gene011682:intron | 45.0% | |
| AAAGAGAATGCAGAGAGGAG+TGG | - | chr8.3:22656308-22656327 | MS.gene011682:intron | 45.0% | |
| AAGAGAATGCAGAGAGGAGT+GGG | - | chr8.3:22656309-22656328 | MS.gene011682:intron | 45.0% | |
| ACTTGGACCAATACAACTGG+TGG | - | chr8.3:22656427-22656446 | MS.gene011682:intron | 45.0% | |
| AGTTGGACCCAAACATTCAC+TGG | + | chr8.3:22654772-22654791 | None:intergenic | 45.0% | |
| ATCCAACTTACCCTAGACCA+AGG | - | chr8.3:22654104-22654123 | MS.gene011682:CDS | 45.0% | |
| ATGCCTGAAAGACACTCATG+TGG | + | chr8.3:22657582-22657601 | None:intergenic | 45.0% | |
| CCAACTTGGACCAATACAAC+TGG | - | chr8.3:22656424-22656443 | MS.gene011682:intron | 45.0% | |
| CCACTCTTTCACACGTAGTT+GGG | - | chr8.3:22654920-22654939 | MS.gene011682:intron | 45.0% | |
| CCCAAAAAATTGGTGGGAAG+GGG | - | chr8.3:22657449-22657468 | MS.gene011682:intron | 45.0% | |
| CTGTATATGGTTGCCCAGTA+CGG | + | chr8.3:22654527-22654546 | None:intergenic | 45.0% | |
| GAATGTCTCAGTCAAGCTCA+AGG | - | chr8.3:22656217-22656236 | MS.gene011682:intron | 45.0% | |
| GATAATTGGGCAACAAGAGG+TGG | - | chr8.3:22657324-22657343 | MS.gene011682:intron | 45.0% | |
| GCTGATAATTGGGCAACAAG+AGG | - | chr8.3:22657321-22657340 | MS.gene011682:intron | 45.0% | |
| GTGAATGTTTGGGTCCAACT+TGG | - | chr8.3:22654772-22654791 | MS.gene011682:intron | 45.0% | |
| TCCACTCTTTCACACGTAGT+TGG | - | chr8.3:22654919-22654938 | MS.gene011682:intron | 45.0% | |
| TCTTGTTAACGAGTGCCTTC+GGG | + | chr8.3:22656086-22656105 | None:intergenic | 45.0% | |
| TCTTTCACACGTAGTTGGGT+CGG | - | chr8.3:22654924-22654943 | MS.gene011682:intron | 45.0% | |
| TGACAGTGTTCGTGATGAGT+TGG | - | chr8.3:22654482-22654501 | MS.gene011682:intron | 45.0% | |
| TGCCTGAAAGACACTCATGT+GGG | + | chr8.3:22657581-22657600 | None:intergenic | 45.0% | |
| ! | CCAGTTGTATTGGTCCAAGT+TGG | + | chr8.3:22656427-22656446 | None:intergenic | 45.0% |
| ! | GTCTTGTTAACGAGTGCCTT+CGG | + | chr8.3:22656087-22656106 | None:intergenic | 45.0% |
| ! | TATGTTGCTTACCAGAGCCT+TGG | + | chr8.3:22654124-22654143 | None:intergenic | 45.0% |
| !! | ACTCCCATGGCTTGCATTTT+TGG | + | chr8.3:22657282-22657301 | None:intergenic | 45.0% |
| !! | ATGGTCCTTAAAGAGTGTCC+CGG | + | chr8.3:22655959-22655978 | None:intergenic | 45.0% |
| !! | ATGTTTAAAGAGTGCCCCGA+AGG | - | chr8.3:22656068-22656087 | MS.gene011682:intron | 45.0% |
| !! | CTCCCATGGCTTGCATTTTT+GGG | + | chr8.3:22657281-22657300 | None:intergenic | 45.0% |
| !!! | ACCCCTTCCCACCAATTTTT+TGG | + | chr8.3:22657453-22657472 | None:intergenic | 45.0% |
| !!! | CCCCTTCCCACCAATTTTTT+GGG | + | chr8.3:22657452-22657471 | None:intergenic | 45.0% |
| !! | ATAAAAGAATATAAAAAAAT+TGG | - | chr8.3:22655587-22655606 | MS.gene011682:intron | 5.0% |
| !! | TAAAAGAATATAAAAAAATT+GGG | - | chr8.3:22655588-22655607 | MS.gene011682:intron | 5.0% |
| !! | TGTTAATAAAAATAAATATA+GGG | - | chr8.3:22654731-22654750 | MS.gene011682:intron | 5.0% |
| !!! | TCTTTTTTTAATTTTTTTTA+GGG | + | chr8.3:22655113-22655132 | None:intergenic | 5.0% |
| !!! | TTCTTTTTTTAATTTTTTTT+AGG | + | chr8.3:22655114-22655133 | None:intergenic | 5.0% |
| AAATGTTAACGAGTGCCCCC+GGG | - | chr8.3:22655938-22655957 | MS.gene011682:intron | 50.0% | |
| ACAGTACCAGCAGAATCTCC+AGG | + | chr8.3:22654343-22654362 | None:intergenic | 50.0% | |
| ACCCCACATGAGTGTCTTTC+AGG | - | chr8.3:22657576-22657595 | MS.gene011682:CDS | 50.0% | |
| AGACACTCATGTGGGGTCAT+TGG | + | chr8.3:22657573-22657592 | None:intergenic | 50.0% | |
| AGCATGTGCATGCTAGTGAG+AGG | + | chr8.3:22654884-22654903 | None:intergenic | 50.0% | |
| AGTTCTTGGGGAACCGTACT+GGG | - | chr8.3:22654511-22654530 | MS.gene011682:intron | 50.0% | |
| CAGTACCAGCAGAATCTCCA+GGG | + | chr8.3:22654342-22654361 | None:intergenic | 50.0% | |
| CCCAACTACGTGTGAAAGAG+TGG | + | chr8.3:22654923-22654942 | None:intergenic | 50.0% | |
| CTTACCAGAGCCTTGGTCTA+GGG | + | chr8.3:22654117-22654136 | None:intergenic | 50.0% | |
| CTTGTTAACGAGTGCCTTCG+GGG | + | chr8.3:22656085-22656104 | None:intergenic | 50.0% | |
| GACAATAGGTACTCCCGTCA+CGG | - | chr8.3:22655211-22655230 | MS.gene011682:intron | 50.0% | |
| GACACTCATGTGGGGTCATT+GGG | + | chr8.3:22657572-22657591 | None:intergenic | 50.0% | |
| GCCTGAAAGACACTCATGTG+GGG | + | chr8.3:22657580-22657599 | None:intergenic | 50.0% | |
| GCTTGCACCACCAGTTGTAT+TGG | + | chr8.3:22656437-22656456 | None:intergenic | 50.0% | |
| TGTGCATGCTAGTGAGAGGA+TGG | + | chr8.3:22654880-22654899 | None:intergenic | 50.0% | |
| ! | AGCCTTGGTCTAGGGTAAGT+TGG | + | chr8.3:22654109-22654128 | None:intergenic | 50.0% |
| ! | GGGTTAGTGGCACATGTAGT+TGG | + | chr8.3:22657432-22657451 | None:intergenic | 50.0% |
| !! | TGGTCCTTAAAGAGTGTCCC+GGG | + | chr8.3:22655958-22655977 | None:intergenic | 50.0% |
| CTTACCCTAGACCAAGGCTC+TGG | - | chr8.3:22654110-22654129 | MS.gene011682:CDS | 55.0% | |
| CTTGTCCCTGGAGATTCTGC+TGG | - | chr8.3:22654334-22654353 | MS.gene011682:CDS | 55.0% | |
| GAGTTCTTGGGGAACCGTAC+TGG | - | chr8.3:22654510-22654529 | MS.gene011682:intron | 55.0% | |
| GCTTACCAGAGCCTTGGTCT+AGG | + | chr8.3:22654118-22654137 | None:intergenic | 55.0% | |
| GTGGCACATGTAGTTGGTCC+TGG | + | chr8.3:22657426-22657445 | None:intergenic | 55.0% | |
| ! | AGGTTGCGGGTTTGCTTCCA+AGG | - | chr8.3:22654273-22654292 | MS.gene011682:CDS | 55.0% |
| !! | GGTCCTTAAAGAGTGTCCCG+GGG | + | chr8.3:22655957-22655976 | None:intergenic | 55.0% |
| !! | GTCCTTAAAGAGTGTCCCGG+GGG | + | chr8.3:22655956-22655975 | None:intergenic | 55.0% |
| TGCCCCCGGGACACTCTTTA+AGG | - | chr8.3:22655951-22655970 | MS.gene011682:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 22653981 | 22657605 | 22653981 | ID=MS.gene011682 |
| chr8.3 | mRNA | 22653981 | 22657605 | 22653981 | ID=MS.gene011682.t1;Parent=MS.gene011682 |
| chr8.3 | exon | 22657455 | 22657605 | 22657455 | ID=MS.gene011682.t1.exon1;Parent=MS.gene011682.t1 |
| chr8.3 | CDS | 22657455 | 22657605 | 22657455 | ID=cds.MS.gene011682.t1;Parent=MS.gene011682.t1 |
| chr8.3 | exon | 22657211 | 22657311 | 22657211 | ID=MS.gene011682.t1.exon2;Parent=MS.gene011682.t1 |
| chr8.3 | CDS | 22657211 | 22657311 | 22657211 | ID=cds.MS.gene011682.t1;Parent=MS.gene011682.t1 |
| chr8.3 | exon | 22656922 | 22657118 | 22656922 | ID=MS.gene011682.t1.exon3;Parent=MS.gene011682.t1 |
| chr8.3 | CDS | 22656922 | 22657118 | 22656922 | ID=cds.MS.gene011682.t1;Parent=MS.gene011682.t1 |
| chr8.3 | exon | 22653981 | 22654371 | 22653981 | ID=MS.gene011682.t1.exon4;Parent=MS.gene011682.t1 |
| chr8.3 | CDS | 22653981 | 22654371 | 22653981 | ID=cds.MS.gene011682.t1;Parent=MS.gene011682.t1 |
| Gene Sequence |
| Protein sequence |
