AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45618


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45618.t1 MTR_4g097640 98.282 291 5 0 1 291 1 291 0.0 606
MS.gene45618.t1 MTR_4g097670 98.282 291 5 0 1 291 1 291 0.0 606
MS.gene45618.t1 MTR_4g097700 93.471 291 7 1 1 291 50 328 0.0 569
MS.gene45618.t1 MTR_7g084770 53.047 279 123 3 16 287 10 287 1.25e-103 304
MS.gene45618.t1 MTR_7g084760 55.253 257 113 2 32 287 32 287 2.07e-103 303
MS.gene45618.t1 MTR_6g033085 52.500 280 126 3 14 287 9 287 3.46e-102 300
MS.gene45618.t1 MTR_6g033055 51.786 280 128 3 14 287 9 287 8.18e-102 300
MS.gene45618.t1 MTR_1g105900 52.190 274 126 5 17 287 20 291 9.34e-102 300
MS.gene45618.t1 MTR_4g045853 49.825 285 131 4 13 288 8 289 3.53e-101 298
MS.gene45618.t1 MTR_7g084750 53.307 257 118 2 32 287 32 287 3.85e-101 298
MS.gene45618.t1 MTR_2g089140 50.523 287 125 4 11 288 9 287 5.45e-101 297
MS.gene45618.t1 MTR_1g105495 50.699 286 130 3 13 287 9 294 1.94e-100 296
MS.gene45618.t1 MTR_4g128410 49.821 279 131 6 14 287 6 280 1.17e-96 286
MS.gene45618.t1 MTR_4g126920 50.570 263 121 4 30 287 23 281 1.19e-93 278
MS.gene45618.t1 MTR_8g013055 52.308 260 117 5 32 288 31 286 2.67e-93 278
MS.gene45618.t1 MTR_7g093530 48.000 275 132 5 20 288 11 280 1.54e-92 276
MS.gene45618.t1 MTR_4g128580 50.365 274 127 5 19 287 16 285 1.81e-91 273
MS.gene45618.t1 MTR_6g088320 47.703 283 140 5 13 290 7 286 2.48e-91 273
MS.gene45618.t1 MTR_2g038860 46.127 284 138 5 17 289 9 288 6.38e-91 272
MS.gene45618.t1 MTR_2g038705 46.127 284 138 5 17 289 9 288 6.38e-91 272
MS.gene45618.t1 MTR_3g084630 48.029 279 136 4 11 287 6 277 9.47e-91 271
MS.gene45618.t1 MTR_3g084620 48.029 279 136 4 11 287 6 277 1.02e-90 271
MS.gene45618.t1 MTR_4g128400 45.583 283 150 3 9 288 3 284 1.65e-90 271
MS.gene45618.t1 MTR_8g102910 48.540 274 133 5 20 288 10 280 3.94e-90 270
MS.gene45618.t1 MTR_2g089140 54.667 225 92 2 73 288 1 224 6.04e-90 267
MS.gene45618.t1 MTR_8g081040 48.410 283 138 5 7 287 5 281 7.58e-90 269
MS.gene45618.t1 MTR_4g128570 49.807 259 114 4 32 289 31 274 1.72e-89 268
MS.gene45618.t1 MTR_8g102220 44.727 275 131 5 15 287 11 266 1.71e-78 239
MS.gene45618.t1 MTR_7g056090 44.610 269 144 4 12 279 12 276 3.50e-78 239
MS.gene45618.t1 MTR_4g128590 42.123 292 136 6 9 287 4 275 8.51e-78 238
MS.gene45618.t1 MTR_5g091730 42.143 280 154 4 9 287 6 278 1.75e-74 230
MS.gene45618.t1 MTR_3g089540 45.000 260 136 4 30 287 28 282 7.88e-71 221
MS.gene45618.t1 MTR_2g049030 39.636 275 152 8 13 281 8 274 2.06e-66 209
MS.gene45618.t1 MTR_2g049130 43.443 244 133 5 32 274 29 268 2.91e-65 206
MS.gene45618.t1 MTR_1g033420 37.500 288 167 7 12 288 7 292 8.61e-58 188
MS.gene45618.t1 MTR_5g029100 38.868 265 152 5 32 287 42 305 7.29e-57 186
MS.gene45618.t1 MTR_4g057450 36.842 266 153 6 29 287 47 304 7.19e-55 180
MS.gene45618.t1 MTR_2g095800 35.048 311 165 12 3 287 10 309 5.76e-54 178
MS.gene45618.t1 MTR_8g064180 34.437 302 167 9 14 287 12 310 6.05e-52 172
MS.gene45618.t1 MTR_5g029100 40.948 232 127 5 65 287 44 274 6.90e-52 172
MS.gene45618.t1 MTR_8g090100 36.194 268 154 7 32 288 21 282 1.84e-51 172
MS.gene45618.t1 MTR_1g063020 36.264 273 147 8 28 287 36 294 4.94e-50 167
MS.gene45618.t1 MTR_7g102260 36.364 264 151 8 32 287 37 291 1.98e-49 166
MS.gene45618.t1 MTR_4g097650 91.935 62 5 0 1 62 1 62 3.09e-36 124
MS.gene45618.t1 MTR_8g479340 37.297 185 54 3 105 287 11 135 4.49e-32 116
MS.gene45618.t1 MTR_8g032640 32.571 175 111 4 53 226 32 200 3.79e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45618.t1 AT5G65730 72.069 290 78 1 1 287 1 290 1.05e-162 454
MS.gene45618.t1 AT4G37800 72.509 291 75 2 4 291 5 293 4.44e-162 452
MS.gene45618.t1 AT5G13870 52.330 279 125 3 16 287 10 287 1.60e-105 309
MS.gene45618.t1 AT5G13870 52.330 279 125 3 16 287 10 287 1.60e-105 309
MS.gene45618.t1 AT5G13870 52.330 279 125 3 16 287 10 287 1.60e-105 309
MS.gene45618.t1 AT4G03210 53.069 277 124 3 14 287 11 284 2.52e-103 303
MS.gene45618.t1 AT1G11545 50.000 290 134 5 7 287 12 299 6.34e-101 298
MS.gene45618.t1 AT2G14620 51.273 275 129 5 16 287 22 294 8.87e-101 297
MS.gene45618.t1 AT2G06850 51.071 280 132 3 12 287 12 290 4.45e-100 295
MS.gene45618.t1 AT4G03210 56.175 251 103 3 40 287 10 256 1.11e-97 288
MS.gene45618.t1 AT3G23730 49.104 279 134 5 16 287 9 286 4.79e-95 282
MS.gene45618.t1 AT5G57550 50.769 260 121 4 30 287 28 282 6.57e-95 281
MS.gene45618.t1 AT5G57560 46.644 298 137 6 1 290 1 284 3.17e-92 275
MS.gene45618.t1 AT2G06850 56.388 227 97 2 62 287 5 230 7.51e-92 272
MS.gene45618.t1 AT4G14130 48.175 274 133 5 20 287 14 284 6.20e-91 272
MS.gene45618.t1 AT4G25810 47.368 285 135 6 12 289 9 285 1.88e-90 270
MS.gene45618.t1 AT4G30270 46.953 279 130 6 14 289 4 267 1.38e-89 268
MS.gene45618.t1 AT5G57530 48.669 263 125 5 30 287 25 282 6.57e-89 266
MS.gene45618.t1 AT4G13090 47.143 280 142 4 12 287 11 288 4.70e-88 265
MS.gene45618.t1 AT5G57540 47.909 263 127 5 30 287 24 281 1.48e-87 263
MS.gene45618.t1 AT2G14620 52.632 228 104 4 63 287 18 244 3.03e-87 261
MS.gene45618.t1 AT5G48070 44.326 282 146 7 11 287 6 281 8.08e-87 261
MS.gene45618.t1 AT2G14620 52.941 221 100 4 70 287 14 233 3.24e-85 255
MS.gene45618.t1 AT4G25820 46.182 275 134 5 18 287 20 285 3.80e-85 257
MS.gene45618.t1 AT2G18800 47.037 270 128 4 32 287 28 296 9.06e-84 254
MS.gene45618.t1 AT4G30290 45.487 277 142 6 14 287 6 276 2.31e-83 252
MS.gene45618.t1 AT4G13080 46.094 256 135 3 32 287 39 291 4.79e-82 249
MS.gene45618.t1 AT3G25050 42.955 291 145 6 14 287 3 289 1.04e-81 248
MS.gene45618.t1 AT4G30280 44.404 277 145 6 14 287 11 281 2.50e-81 247
MS.gene45618.t1 AT4G28850 45.833 264 134 4 30 287 27 287 4.51e-81 247
MS.gene45618.t1 AT1G65310 46.360 261 131 6 30 287 27 281 1.92e-78 239
MS.gene45618.t1 AT1G65310 46.360 261 131 6 30 287 49 303 2.90e-78 240
MS.gene45618.t1 AT1G14720 39.161 286 163 8 12 288 8 291 1.95e-57 187
MS.gene45618.t1 AT1G32170 37.201 293 171 7 7 288 4 294 5.92e-57 187
MS.gene45618.t1 AT2G01850 37.193 285 170 7 12 288 8 291 2.74e-54 179
MS.gene45618.t1 AT3G48580 38.168 262 142 8 30 289 32 275 4.45e-53 174
MS.gene45618.t1 AT1G10550 37.209 258 146 7 44 287 54 309 7.08e-53 175
MS.gene45618.t1 AT3G44990 35.849 265 155 5 30 287 37 293 6.16e-51 169
MS.gene45618.t1 AT4G18990 35.484 279 159 6 29 288 37 313 1.44e-50 171
MS.gene45618.t1 AT2G36870 36.431 269 144 10 32 287 43 297 8.33e-50 167
MS.gene45618.t1 AT3G48580 39.130 230 121 7 62 289 4 216 1.01e-47 159
MS.gene45618.t1 AT4G18990 37.500 200 106 5 106 288 42 239 6.13e-40 140
MS.gene45618.t1 AT3G48580 33.969 262 133 9 30 289 32 255 1.09e-37 134
MS.gene45618.t1 AT2G36870 41.304 138 72 4 32 162 43 178 8.97e-27 103

Find 64 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATCAATTTGCTTGATA+TGG 0.190810 8.4:-24818701 None:intergenic
TTCATACTTACTCCATTCTT+TGG 0.196067 8.4:+24819481 MS.gene45618:CDS
CATTATGGGAAGCTGATAAT+TGG 0.203518 8.4:+24820428 MS.gene45618:CDS
ACCCCACATGAGTGTCTTTC+AGG 0.215363 8.4:+24820694 MS.gene45618:CDS
TTGTTCTTGTATACTCTAAT+AGG 0.231975 8.4:-24820352 None:intergenic
GTGGATTAGAGAAAATTAAT+TGG 0.259471 8.4:+24820461 MS.gene45618:CDS
GATTCTCGTATCATCTGTTT+GGG 0.264815 8.4:+24818629 MS.gene45618:CDS
ATATTCGTTTGAACTGTATA+TGG 0.285858 8.4:-24819393 None:intergenic
GAGAACAAAGGGTTAATCTT+TGG 0.288208 8.4:+24819439 MS.gene45618:CDS
GGATTCTCGTATCATCTGTT+TGG 0.292551 8.4:+24818628 MS.gene45618:CDS
AAGTCTTGATTAAAAGTTGC+TGG 0.378416 8.4:-24818657 None:intergenic
TTGATCAATTTGCTTGATAT+GGG 0.378785 8.4:-24818700 None:intergenic
AGACACTCATGTGGGGTCAT+TGG 0.379857 8.4:-24820688 None:intergenic
GCTTACCAGAGCCTTGGTCT+AGG 0.393896 8.4:-24818743 None:intergenic
GAGTTCTTGGGAAACCGTAC+TGG 0.398600 8.4:+24819366 MS.gene45618:CDS
GACACTCATGTGGGGTCATT+GGG 0.402289 8.4:-24820687 None:intergenic
GGGTTAGTGGCACATGTAGT+TGG 0.414336 8.4:-24820547 None:intergenic
TCCAAGGTGAAGTACTTGTT+TGG 0.422327 8.4:+24819143 MS.gene45618:CDS
ATTGAAGGATGTGCAATTCC+AGG 0.423415 8.4:+24820523 MS.gene45618:CDS
CAAACGAATATTTATGCTCA+TGG 0.438237 8.4:+24819405 MS.gene45618:CDS
CCTATACCTTCTAGCTTCAA+TGG 0.438940 8.4:-24820611 None:intergenic
TACAAGAACAATGAAGCAAA+AGG 0.440360 8.4:+24820364 MS.gene45618:CDS
ATTATGGGAAGCTGATAATT+GGG 0.454763 8.4:+24820429 MS.gene45618:CDS
AGGTTGCGGGTTTGCTTCCA+AGG 0.460427 8.4:+24819127 MS.gene45618:intron
AATATTTATGCTCATGGAAA+GGG 0.474052 8.4:+24819411 MS.gene45618:CDS
GTGGCACATGTAGTTGGTCC+TGG 0.486861 8.4:-24820541 None:intergenic
CTTGTCCCTGGAGATTCTGC+TGG 0.493939 8.4:+24819188 MS.gene45618:CDS
AGCCTTGGTCTAGGGTAAGT+TGG 0.505926 8.4:-24818734 None:intergenic
ACCTTTCTATGCTTATTACA+AGG 0.510047 8.4:+24820492 MS.gene45618:CDS
TTAGTGCCATTGAAGCTAGA+AGG 0.511286 8.4:+24820605 MS.gene45618:CDS
CTTACCAGAGCCTTGGTCTA+GGG 0.512113 8.4:-24818742 None:intergenic
ATTATTGTCAAGATAAATCA+AGG 0.521408 8.4:+24820662 MS.gene45618:CDS
TATGTTGCTTACCAGAGCCT+TGG 0.524039 8.4:-24818749 None:intergenic
ATGGTGATGATTCCAAAGAA+TGG 0.527370 8.4:-24819493 None:intergenic
ACAGTTCCAGCAGAATCTCC+AGG 0.531704 8.4:-24819194 None:intergenic
CTGTATATGGTTGCCCAGTA+CGG 0.532005 8.4:-24819380 None:intergenic
GAATATTTATGCTCATGGAA+AGG 0.532200 8.4:+24819410 MS.gene45618:CDS
CATATCAAGCAAATTGATCA+AGG 0.537805 8.4:+24818702 MS.gene45618:CDS
CCATTGAAGCTAGAAGGTAT+AGG 0.547043 8.4:+24820611 MS.gene45618:CDS
TGATCAATTTGCTTGATATG+GGG 0.550945 8.4:-24818699 None:intergenic
AGTTCTTGGGAAACCGTACT+GGG 0.556815 8.4:+24819367 MS.gene45618:CDS
ACAAGAACAATGAAGCAAAA+GGG 0.563731 8.4:+24820365 MS.gene45618:CDS
AAAGGGTGATAGAGAACAAA+GGG 0.564292 8.4:+24819428 MS.gene45618:CDS
TCCTTGTAATAAGCATAGAA+AGG 0.566971 8.4:-24820493 None:intergenic
TGACAGTGTTCGTGATGAGT+TGG 0.575375 8.4:+24819338 MS.gene45618:CDS
TAAGTATGAAAGTCAGCAGA+AGG 0.575925 8.4:-24819468 None:intergenic
GATAATTGGGCAACAAGAGG+TGG 0.576591 8.4:+24820442 MS.gene45618:CDS
TTGAAGCTAGAAGGTATAGG+TGG 0.577676 8.4:+24820614 MS.gene45618:CDS
ATGAAGATTAAACTTGTCCC+TGG 0.591788 8.4:+24819176 MS.gene45618:CDS
AGAAGGGTAAAATATGGCCA+TGG 0.594508 8.4:-24818571 None:intergenic
TAATGTTGAAAATACTCCCA+TGG 0.606737 8.4:-24820410 None:intergenic
ACCAAACAAGTACTTCACCT+TGG 0.609031 8.4:-24819144 None:intergenic
GACAATAATCATAGATCACA+TGG 0.610597 8.4:-24820648 None:intergenic
TGCCTGAAAGACACTCATGT+GGG 0.615126 8.4:-24820696 None:intergenic
ATCAAGACTTTCATGTCACG+TGG 0.617056 8.4:+24818670 MS.gene45618:CDS
CTTACCCTAGACCAAGGCTC+TGG 0.621562 8.4:+24818738 MS.gene45618:CDS
GCTGATAATTGGGCAACAAG+AGG 0.638048 8.4:+24820439 MS.gene45618:CDS
CAGTTCCAGCAGAATCTCCA+GGG 0.642838 8.4:-24819193 None:intergenic
ATTCTCGTATCATCTGTTTG+GGG 0.645179 8.4:+24818630 MS.gene45618:CDS
TGAAGCTAGAAGGTATAGGT+GGG 0.659236 8.4:+24820615 MS.gene45618:CDS
GCCTGAAAGACACTCATGTG+GGG 0.659861 8.4:-24820695 None:intergenic
ATGCCTGAAAGACACTCATG+TGG 0.662116 8.4:-24820697 None:intergenic
ATCCAACTTACCCTAGACCA+AGG 0.669978 8.4:+24818732 MS.gene45618:CDS
GAAAGGGTGATAGAGAACAA+AGG 0.672872 8.4:+24819427 MS.gene45618:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTTTTTCATTTTT+AGG + chr8.4:24819873-24819892 MS.gene45618:intron 10.0%
!! TAAAAGTAAATGAAATGTAT+AGG + chr8.4:24820084-24820103 MS.gene45618:intron 15.0%
!!! AATTTTTTTGTTCAAATAGA+TGG + chr8.4:24819680-24819699 MS.gene45618:intron 15.0%
!!! ATAATAAAGTTTTGAACATT+AGG - chr8.4:24819015-24819034 None:intergenic 15.0%
!!! ATATTTTTACTTACACAATA+TGG - chr8.4:24819515-24819534 None:intergenic 15.0%
!!! TCTTTTTTATGTTGTTATTT+TGG + chr8.4:24818607-24818626 MS.gene45618:CDS 15.0%
!!! TGAATATATTTTTCATTTTG+TGG + chr8.4:24819298-24819317 MS.gene45618:intron 15.0%
!! AAGTGTGACTATAATTAATT+AGG - chr8.4:24820174-24820193 None:intergenic 20.0%
!! AGTATTTGTGATAGATAAAT+AGG - chr8.4:24819094-24819113 None:intergenic 20.0%
!! AGTTTAGTAGCTATAATTTA+AGG - chr8.4:24820058-24820077 None:intergenic 20.0%
!! ATTATTGTCAAGATAAATCA+AGG + chr8.4:24820662-24820681 MS.gene45618:CDS 20.0%
!! ATTTACCATGAATTTAAATG+TGG - chr8.4:24819951-24819970 None:intergenic 20.0%
!! TTTAGTGAAGAAATTAAAGA+TGG - chr8.4:24820134-24820153 None:intergenic 20.0%
!!! AAATACTTAACTTTTTGCAA+AGG + chr8.4:24819107-24819126 MS.gene45618:intron 20.0%
!!! ACATTTCATTTACTTTTACA+TGG - chr8.4:24820082-24820101 None:intergenic 20.0%
!!! TATGTTATTCATTTTGGTAA+TGG + chr8.4:24818899-24818918 MS.gene45618:intron 20.0%
!!! TTTGTTATCTTCACTATATA+TGG + chr8.4:24819703-24819722 MS.gene45618:intron 20.0%
! AAATGTGGTTAACCATAATA+GGG - chr8.4:24819936-24819955 None:intergenic 25.0%
! AATATTTATGCTCATGGAAA+GGG + chr8.4:24819411-24819430 MS.gene45618:CDS 25.0%
! ATACATAATACATGAAGTGT+TGG + chr8.4:24820002-24820021 MS.gene45618:intron 25.0%
! ATATTCGTTTGAACTGTATA+TGG - chr8.4:24819396-24819415 None:intergenic 25.0%
! ATTATGATTCAAACAAAGAG+TGG - chr8.4:24819253-24819272 None:intergenic 25.0%
! GTTAACCACATTTAAATTCA+TGG + chr8.4:24819943-24819962 MS.gene45618:intron 25.0%
! TAAATGTGGTTAACCATAAT+AGG - chr8.4:24819937-24819956 None:intergenic 25.0%
! TCTAATACATACATTTGTCA+TGG + chr8.4:24818806-24818825 MS.gene45618:intron 25.0%
! TTAGTAGCTATAATTTAAGG+TGG - chr8.4:24820055-24820074 None:intergenic 25.0%
! TTGTTCTTGTATACTCTAAT+AGG - chr8.4:24820355-24820374 None:intergenic 25.0%
!! ACGATGTATGTTATTCATTT+TGG + chr8.4:24818893-24818912 MS.gene45618:intron 25.0%
!! TAATTTAAGGTGGATATATG+AGG - chr8.4:24820045-24820064 None:intergenic 25.0%
!! TACATAATACATGAAGTGTT+GGG + chr8.4:24820003-24820022 MS.gene45618:intron 25.0%
!! TTGATCAATTTGCTTGATAT+GGG - chr8.4:24818703-24818722 None:intergenic 25.0%
!!! GTGGATTAGAGAAAATTAAT+TGG + chr8.4:24820461-24820480 MS.gene45618:CDS 25.0%
!!! GTTTTTAGAAGGGTAAAATA+TGG - chr8.4:24818580-24818599 None:intergenic 25.0%
!!! TACAAGGATTTTGATATTGA+AGG + chr8.4:24820508-24820527 MS.gene45618:CDS 25.0%
!!! TTTTACCCTTCTAAAAACAA+TGG + chr8.4:24818582-24818601 MS.gene45618:CDS 25.0%
AAGTCTTGATTAAAAGTTGC+TGG - chr8.4:24818660-24818679 None:intergenic 30.0%
ACAAGAACAATGAAGCAAAA+GGG + chr8.4:24820365-24820384 MS.gene45618:CDS 30.0%
ACCTTTCTATGCTTATTACA+AGG + chr8.4:24820492-24820511 MS.gene45618:CDS 30.0%
ATTATGGGAAGCTGATAATT+GGG + chr8.4:24820429-24820448 MS.gene45618:CDS 30.0%
CAAACGAATATTTATGCTCA+TGG + chr8.4:24819405-24819424 MS.gene45618:CDS 30.0%
CATATCAAGCAAATTGATCA+AGG + chr8.4:24818702-24818721 MS.gene45618:CDS 30.0%
GAAATTAAAGATGGTTGGAT+TGG - chr8.4:24820125-24820144 None:intergenic 30.0%
GAATATTTATGCTCATGGAA+AGG + chr8.4:24819410-24819429 MS.gene45618:CDS 30.0%
GACAATAATCATAGATCACA+TGG - chr8.4:24820651-24820670 None:intergenic 30.0%
GTGAAGAAATTAAAGATGGT+TGG - chr8.4:24820130-24820149 None:intergenic 30.0%
TAATGTTGAAAATACTCCCA+TGG - chr8.4:24820229-24820248 None:intergenic 30.0%
TACAAGAACAATGAAGCAAA+AGG + chr8.4:24820364-24820383 MS.gene45618:CDS 30.0%
TCCTTGTAATAAGCATAGAA+AGG - chr8.4:24820496-24820515 None:intergenic 30.0%
TTCATACTTACTCCATTCTT+TGG + chr8.4:24819481-24819500 MS.gene45618:CDS 30.0%
! CATTATGGGAAGTTTTCAAA+TGG + chr8.4:24820244-24820263 MS.gene45618:intron 30.0%
! CTTGATCAATTTGCTTGATA+TGG - chr8.4:24818704-24818723 None:intergenic 30.0%
! TGATCAATTTGCTTGATATG+GGG - chr8.4:24818702-24818721 None:intergenic 30.0%
! TTAACTTTTTGCAAAGGTTG+CGG + chr8.4:24819113-24819132 MS.gene45618:intron 30.0%
!!! AAGACACCATTGTTTTTAGA+AGG - chr8.4:24818591-24818610 None:intergenic 30.0%
!!! AGACACCATTGTTTTTAGAA+GGG - chr8.4:24818590-24818609 None:intergenic 30.0%
!!! GGGAGTATTTTCAACATTAT+GGG + chr8.4:24820230-24820249 MS.gene45618:intron 30.0%
!!! TCATTTTGGTAATGGCTTAT+CGG + chr8.4:24818907-24818926 MS.gene45618:intron 30.0%
!!! TGGGAGTATTTTCAACATTA+TGG + chr8.4:24820229-24820248 MS.gene45618:intron 30.0%
AAAACCTTGAATACACATGC+AGG + chr8.4:24820311-24820330 MS.gene45618:intron 35.0%
AAAGGGTGATAGAGAACAAA+GGG + chr8.4:24819428-24819447 MS.gene45618:CDS 35.0%
AAGTTTGCATGTCCCTATTA+TGG + chr8.4:24819921-24819940 MS.gene45618:intron 35.0%
ACATACATTTGTCATGGCAA+TGG + chr8.4:24818812-24818831 MS.gene45618:intron 35.0%
ACATGCAAACTTGTACCTTT+GGG - chr8.4:24819913-24819932 None:intergenic 35.0%
ATGAAGATTAAACTTGTCCC+TGG + chr8.4:24819176-24819195 MS.gene45618:CDS 35.0%
ATTCTCGTATCATCTGTTTG+GGG + chr8.4:24818630-24818649 MS.gene45618:CDS 35.0%
CACTAACCCAAAAAATTGGT+GGG + chr8.4:24820561-24820580 MS.gene45618:CDS 35.0%
CATTATGGGAAGCTGATAAT+TGG + chr8.4:24820428-24820447 MS.gene45618:CDS 35.0%
CCTAATGACACAAGATAAGA+AGG + chr8.4:24819799-24819818 MS.gene45618:intron 35.0%
GAGAACAAAGGGTTAATCTT+TGG + chr8.4:24819439-24819458 MS.gene45618:CDS 35.0%
GATTCTCGTATCATCTGTTT+GGG + chr8.4:24818629-24818648 MS.gene45618:CDS 35.0%
TAAGTATGAAAGTCAGCAGA+AGG - chr8.4:24819471-24819490 None:intergenic 35.0%
! ATGGTGATGATTCCAAAGAA+TGG - chr8.4:24819496-24819515 None:intergenic 35.0%
! ATTTGTCATGGCAATGGATT+TGG + chr8.4:24818818-24818837 MS.gene45618:intron 35.0%
! CCTTCTTATCTTGTGTCATT+AGG - chr8.4:24819802-24819821 None:intergenic 35.0%
! TAACTTTTTGCAAAGGTTGC+GGG + chr8.4:24819114-24819133 MS.gene45618:intron 35.0%
!! TATGCTTTAAGACCCAACTT+CGG + chr8.4:24818932-24818951 MS.gene45618:intron 35.0%
!!! GAGTTGGATTTTGAGTTCTT+GGG + chr8.4:24819354-24819373 MS.gene45618:CDS 35.0%
!!! TGAGTTGGATTTTGAGTTCT+TGG + chr8.4:24819353-24819372 MS.gene45618:CDS 35.0%
ACCAAACAAGTACTTCACCT+TGG - chr8.4:24819147-24819166 None:intergenic 40.0%
ACCCAAAAAATTGGTGGGAA+AGG + chr8.4:24820566-24820585 MS.gene45618:CDS 40.0%
AGAACCTGCATGTGTATTCA+AGG - chr8.4:24820318-24820337 None:intergenic 40.0%
ATACCCAAAAATGCAAGCCA+TGG + chr8.4:24820393-24820412 MS.gene45618:CDS 40.0%
ATCAAGACTTTCATGTCACG+TGG + chr8.4:24818670-24818689 MS.gene45618:CDS 40.0%
ATCGTAAAAGATGCAAGCCA+TGG + chr8.4:24820209-24820228 MS.gene45618:intron 40.0%
ATTGAAGGATGTGCAATTCC+AGG + chr8.4:24820523-24820542 MS.gene45618:CDS 40.0%
CATGCAAACTTGTACCTTTG+GGG - chr8.4:24819912-24819931 None:intergenic 40.0%
CCACTAACCCAAAAAATTGG+TGG + chr8.4:24820560-24820579 MS.gene45618:CDS 40.0%
CCCAAAAAATTGGTGGGAAA+GGG + chr8.4:24820567-24820586 MS.gene45618:CDS 40.0%
GAAAGGGTGATAGAGAACAA+AGG + chr8.4:24819427-24819446 MS.gene45618:CDS 40.0%
GACATGCAAACTTGTACCTT+TGG - chr8.4:24819914-24819933 None:intergenic 40.0%
GGATTCTCGTATCATCTGTT+TGG + chr8.4:24818628-24818647 MS.gene45618:CDS 40.0%
TACCCAAAAATGCAAGCCAT+GGG + chr8.4:24820394-24820413 MS.gene45618:CDS 40.0%
TCGTAAAAGATGCAAGCCAT+GGG + chr8.4:24820210-24820229 MS.gene45618:intron 40.0%
! CCATTGAAGCTAGAAGGTAT+AGG + chr8.4:24820611-24820630 MS.gene45618:CDS 40.0%
! GTGCCACTAACCCAAAAAAT+TGG + chr8.4:24820557-24820576 MS.gene45618:CDS 40.0%
! TCCAAGGTGAAGTACTTGTT+TGG + chr8.4:24819143-24819162 MS.gene45618:CDS 40.0%
! TGAAGCTAGAAGGTATAGGT+GGG + chr8.4:24820615-24820634 MS.gene45618:CDS 40.0%
! TTAGTGCCATTGAAGCTAGA+AGG + chr8.4:24820605-24820624 MS.gene45618:CDS 40.0%
! TTGAAGCTAGAAGGTATAGG+TGG + chr8.4:24820614-24820633 MS.gene45618:CDS 40.0%
!! CCTATACCTTCTAGCTTCAA+TGG - chr8.4:24820614-24820633 None:intergenic 40.0%
!! TACCTTTGGGGTACAAGTTA+AGG - chr8.4:24819900-24819919 None:intergenic 40.0%
!!! ACCCTTTCCCACCAATTTTT+TGG - chr8.4:24820571-24820590 None:intergenic 40.0%
!!! ATGGCTTGCATTTTTGGGTA+TGG - chr8.4:24820394-24820413 None:intergenic 40.0%
!!! CCACCAATTTTTTGGGTTAG+TGG - chr8.4:24820563-24820582 None:intergenic 40.0%
!!! CCCTTTCCCACCAATTTTTT+GGG - chr8.4:24820570-24820589 None:intergenic 40.0%
AGTTCTTGGGAAACCGTACT+GGG + chr8.4:24819367-24819386 MS.gene45618:CDS 45.0%
ATCCAACTTACCCTAGACCA+AGG + chr8.4:24818732-24818751 MS.gene45618:CDS 45.0%
ATGCCTGAAAGACACTCATG+TGG - chr8.4:24820700-24820719 None:intergenic 45.0%
CTGTATATGGTTGCCCAGTA+CGG - chr8.4:24819383-24819402 None:intergenic 45.0%
GATAATTGGGCAACAAGAGG+TGG + chr8.4:24820442-24820461 MS.gene45618:CDS 45.0%
GCTGATAATTGGGCAACAAG+AGG + chr8.4:24820439-24820458 MS.gene45618:CDS 45.0%
GGCAAAAAGAGACCGAAGTT+GGG - chr8.4:24818947-24818966 None:intergenic 45.0%
TGACAGTGTTCGTGATGAGT+TGG + chr8.4:24819338-24819357 MS.gene45618:CDS 45.0%
TGCCTGAAAGACACTCATGT+GGG - chr8.4:24820699-24820718 None:intergenic 45.0%
! TATGTTGCTTACCAGAGCCT+TGG - chr8.4:24818752-24818771 None:intergenic 45.0%
!! ACTCCCATGGCTTGCATTTT+TGG - chr8.4:24820400-24820419 None:intergenic 45.0%
!! CTCCCATGGCTTGCATTTTT+GGG - chr8.4:24820399-24820418 None:intergenic 45.0%
!! GTCCTTAACTTGTACCCCAA+AGG + chr8.4:24819895-24819914 MS.gene45618:intron 45.0%
!! AATACTATATTAATAAAATT+TGG + chr8.4:24819055-24819074 MS.gene45618:intron 5.0%
ACAGTTCCAGCAGAATCTCC+AGG - chr8.4:24819197-24819216 None:intergenic 50.0%
ACCCCACATGAGTGTCTTTC+AGG + chr8.4:24820694-24820713 MS.gene45618:CDS 50.0%
AGACACTCATGTGGGGTCAT+TGG - chr8.4:24820691-24820710 None:intergenic 50.0%
CAGTTCCAGCAGAATCTCCA+GGG - chr8.4:24819196-24819215 None:intergenic 50.0%
CTTACCAGAGCCTTGGTCTA+GGG - chr8.4:24818745-24818764 None:intergenic 50.0%
GACACTCATGTGGGGTCATT+GGG - chr8.4:24820690-24820709 None:intergenic 50.0%
GAGTTCTTGGGAAACCGTAC+TGG + chr8.4:24819366-24819385 MS.gene45618:CDS 50.0%
GCCTGAAAGACACTCATGTG+GGG - chr8.4:24820698-24820717 None:intergenic 50.0%
GGGCAAAAAGAGACCGAAGT+TGG - chr8.4:24818948-24818967 None:intergenic 50.0%
! AGCCTTGGTCTAGGGTAAGT+TGG - chr8.4:24818737-24818756 None:intergenic 50.0%
! GGGTTAGTGGCACATGTAGT+TGG - chr8.4:24820550-24820569 None:intergenic 50.0%
CTTACCCTAGACCAAGGCTC+TGG + chr8.4:24818738-24818757 MS.gene45618:CDS 55.0%
CTTGTCCCTGGAGATTCTGC+TGG + chr8.4:24819188-24819207 MS.gene45618:CDS 55.0%
GCTTACCAGAGCCTTGGTCT+AGG - chr8.4:24818746-24818765 None:intergenic 55.0%
GTGGCACATGTAGTTGGTCC+TGG - chr8.4:24820544-24820563 None:intergenic 55.0%
TATTTGCCCCGTGCAACGCA+CGG - chr8.4:24818969-24818988 None:intergenic 55.0%
! AGGTTGCGGGTTTGCTTCCA+AGG + chr8.4:24819127-24819146 MS.gene45618:intron 55.0%
! CTTTTTGCCCGTGCGTTGCA+CGG + chr8.4:24818958-24818977 MS.gene45618:intron 55.0%
! TTTTTGCCCGTGCGTTGCAC+GGG + chr8.4:24818959-24818978 MS.gene45618:intron 55.0%
ATTTGCCCCGTGCAACGCAC+GGG - chr8.4:24818968-24818987 None:intergenic 60.0%
! TTTTGCCCGTGCGTTGCACG+GGG + chr8.4:24818960-24818979 MS.gene45618:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 24818573 24820723 24818573 ID=MS.gene45618
chr8.4 mRNA 24818573 24820723 24818573 ID=MS.gene45618.t1;Parent=MS.gene45618
chr8.4 exon 24818573 24818759 24818573 ID=MS.gene45618.t1.exon1;Parent=MS.gene45618.t1
chr8.4 CDS 24818573 24818759 24818573 ID=cds.MS.gene45618.t1;Parent=MS.gene45618.t1
chr8.4 exon 24819129 24819229 24819129 ID=MS.gene45618.t1.exon2;Parent=MS.gene45618.t1
chr8.4 CDS 24819129 24819229 24819129 ID=cds.MS.gene45618.t1;Parent=MS.gene45618.t1
chr8.4 exon 24819324 24819520 24819324 ID=MS.gene45618.t1.exon3;Parent=MS.gene45618.t1
chr8.4 CDS 24819324 24819520 24819324 ID=cds.MS.gene45618.t1;Parent=MS.gene45618.t1
chr8.4 exon 24820333 24820723 24820333 ID=MS.gene45618.t1.exon4;Parent=MS.gene45618.t1
chr8.4 CDS 24820333 24820723 24820333 ID=cds.MS.gene45618.t1;Parent=MS.gene45618.t1
Gene Sequence

>MS.gene45618

ATGGCCATATTTTACCCTTCTAAAAACAATGGTGTCTTTTTTATGTTGTTATTTTGGATTCTCGTATCATCTGTTTGGGGAAGACCAGCAACTTTTAATCAAGACTTTCATGTCACGTGGTCTGAACCCCATATCAAGCAAATTGATCAAGGCAGAACTATCCAACTTACCCTAGACCAAGGCTCTGGTAAGCAACATATATCATATCTTAGTTGTTATATATCAACTCTGTTTCTAATACATACATTTGTCATGGCAATGGATTTGGTTTAATTTATTAGTTGTTATATATTAACTATGTATTTGAATTTACAAAAACGACGATGTATGTTATTCATTTTGGTAATGGCTTATCGGCATATGCTTTAAGACCCAACTTCGGTCTCTTTTTGCCCGTGCGTTGCACGGGGCAAATACTAGTATTATATTATATACATGTCCTAATGTTCAAAACTTTATTATACTTGTCTTATAAAATGATCAATACTATATTAATAAAATTTGGATAAGTCATGTTACCTATTTATCTATCACAAATACTTAACTTTTTGCAAAGGTTGCGGGTTTGCTTCCAAGGTGAAGTACTTGTTTGGTCGTGTTAGCATGAAGATTAAACTTGTCCCTGGAGATTCTGCTGGAACTGTTACTGCATTTTATGTAAGTTCAAATTAATTTCTCCACTCTTTGTTTGAATCATAATTAAGTGAGACAAAAACTGAAATCACTGAATATATTTTTCATTTTGTGGTAGATGAACTCTGACACTGACAGTGTTCGTGATGAGTTGGATTTTGAGTTCTTGGGAAACCGTACTGGGCAACCATATACAGTTCAAACGAATATTTATGCTCATGGAAAGGGTGATAGAGAACAAAGGGTTAATCTTTGGTTTGATCCTTCTGCTGACTTTCATACTTACTCCATTCTTTGGAATCATCACCATATTGTGTAAGTAAAAATATATATAAGCATAATGATGTGATTCTGTTAATAAAAATAAATATAATTGCATAATGTAAATCACAAAGTTGCATTGAGATATTTGATATTTCAGTTGTGTTATTTGAACAATCAAATTTAAAAACTATTTTAGAGAACGTTCTAGACAATTTTTTTGTTCAAATAGATGGTTTGTTATCTTCACTATATATGGTTCAAATTATGTATTTTTTTTTAAGCAAAATCATATAGCTGAACACTTAAATTATGAAAATGTTAACTTGTATCCTAATGACACAAGATAAGAAGGAAACGTAAAAGTGTAATATTAAAAATTGTGTATTTATTATTTTTTAAATGCAACATTTTTTTTTCATTTTTAGGTCCTTAACTTGTACCCCAAAGGTACAAGTTTGCATGTCCCTATTATGGTTAACCACATTTAAATTCATGGTAAATGAAGTTAAATTGATCATTAATGAGTCTCAACATACATAATACATGAAGTGTTGGGTTTTGAACTATGTACACCTCATATATCCACCTTAAATTATAGCTACTAAACTACCATGTAAAAGTAAATGAAATGTATAGGAGAAACATGTAACATCCAATCCAACCATCTTTAATTTCTTCACTAAATTTAGCAAATATTTTGACCTAATTAATTATAGTCACACTTTTGTCACAAAATCATATCGTAAAAGATGCAAGCCATGGGAGTATTTTCAACATTATGGGAAGTTTTCAAATGGTCATGAATATAATTTTGATTAATCATAGCTTCTATGATTTATTTAAAACCTTGAATACACATGCAGGTTCTACGTTGATGAAGTTCCTATTAGAGTATACAAGAACAATGAAGCAAAAGGGATACCATACCCAAAAATGCAAGCCATGGGAGTATTTTCAACATTATGGGAAGCTGATAATTGGGCAACAAGAGGTGGATTAGAGAAAATTAATTGGAGTAAAGCACCTTTCTATGCTTATTACAAGGATTTTGATATTGAAGGATGTGCAATTCCAGGACCAACTACATGTGCCACTAACCCAAAAAATTGGTGGGAAAGGGTTGAATATCAAGCTCTTAGTGCCATTGAAGCTAGAAGGTATAGGTGGGTTCGTATGAACCATGTGATCTATGATTATTGTCAAGATAAATCAAGGTACCCAATGACCCCACATGAGTGTCTTTCAGGCATTTAA

Protein sequence

>MS.gene45618.t1

MAIFYPSKNNGVFFMLLFWILVSSVWGRPATFNQDFHVTWSEPHIKQIDQGRTIQLTLDQGSGCGFASKVKYLFGRVSMKIKLVPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRTGQPYTVQTNIYAHGKGDREQRVNLWFDPSADFHTYSILWNHHHIVFYVDEVPIRVYKNNEAKGIPYPKMQAMGVFSTLWEADNWATRGGLEKINWSKAPFYAYYKDFDIEGCAIPGPTTCATNPKNWWERVEYQALSAIEARRYRWVRMNHVIYDYCQDKSRYPMTPHECLSGI