AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011681

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011681.t1 MTR_4g097640 96.429 280 7 1 1 280 15 291 0.0 572
MS.gene011681.t1 MTR_4g097670 96.429 280 7 1 1 280 15 291 0.0 572
MS.gene011681.t1 MTR_4g097700 98.479 263 4 0 18 280 66 328 0.0 555
MS.gene011681.t1 MTR_7g084770 53.047 279 126 3 2 276 10 287 3.41e-103 303
MS.gene011681.t1 MTR_7g084760 55.642 257 112 2 21 276 32 287 4.73e-103 302
MS.gene011681.t1 MTR_6g033085 52.817 284 125 4 1 276 5 287 2.33e-102 300
MS.gene011681.t1 MTR_6g033055 53.047 279 122 4 6 276 10 287 6.78e-102 299
MS.gene011681.t1 MTR_2g089140 51.246 281 123 4 8 277 10 287 1.87e-100 295
MS.gene011681.t1 MTR_1g105900 53.282 259 117 4 21 276 34 291 3.13e-100 295
MS.gene011681.t1 MTR_7g084750 53.307 257 118 2 21 276 32 287 3.60e-100 295
MS.gene011681.t1 MTR_1g105495 53.053 262 119 2 19 276 33 294 3.85e-99 293
MS.gene011681.t1 MTR_4g045853 51.866 268 117 4 19 277 25 289 1.08e-98 291
MS.gene011681.t1 MTR_4g128410 51.527 262 119 5 19 276 23 280 1.52e-95 283
MS.gene011681.t1 MTR_4g126920 50.379 264 120 4 19 276 23 281 2.74e-93 277
MS.gene011681.t1 MTR_8g013055 51.538 260 119 5 21 277 31 286 4.86e-92 274
MS.gene011681.t1 MTR_7g093530 47.292 277 135 5 6 277 10 280 7.04e-92 273
MS.gene011681.t1 MTR_3g084630 48.375 277 133 4 1 276 10 277 2.94e-91 272
MS.gene011681.t1 MTR_3g084620 48.375 277 133 4 1 276 10 277 3.53e-91 271
MS.gene011681.t1 MTR_4g128400 46.494 271 143 2 8 277 15 284 1.05e-90 271
MS.gene011681.t1 MTR_2g038860 44.912 285 142 4 4 278 9 288 1.26e-90 271
MS.gene011681.t1 MTR_2g038705 44.912 285 142 4 4 278 9 288 1.26e-90 271
MS.gene011681.t1 MTR_4g128580 49.430 263 127 3 19 276 24 285 3.80e-90 269
MS.gene011681.t1 MTR_6g088320 47.535 284 138 6 1 279 9 286 3.88e-90 269
MS.gene011681.t1 MTR_8g102910 50.379 264 123 5 19 277 20 280 6.34e-90 268
MS.gene011681.t1 MTR_2g089140 54.667 225 92 2 62 277 1 224 1.25e-89 266
MS.gene011681.t1 MTR_4g128570 47.101 276 130 4 2 276 12 272 1.47e-89 267
MS.gene011681.t1 MTR_8g081040 48.736 277 133 5 1 276 13 281 1.89e-89 267
MS.gene011681.t1 MTR_4g128590 43.206 287 132 6 1 276 9 275 4.86e-79 241
MS.gene011681.t1 MTR_7g056090 47.012 251 128 4 19 268 30 276 5.21e-79 241
MS.gene011681.t1 MTR_8g102220 44.404 277 132 5 1 276 11 266 6.91e-79 240
MS.gene011681.t1 MTR_5g091730 43.682 277 147 4 1 276 10 278 1.29e-77 237
MS.gene011681.t1 MTR_3g089540 45.174 259 137 4 19 276 28 282 6.73e-71 220
MS.gene011681.t1 MTR_2g049030 41.270 252 139 6 21 270 30 274 3.12e-67 211
MS.gene011681.t1 MTR_2g049130 43.443 244 133 5 21 263 29 268 5.00e-65 205
MS.gene011681.t1 MTR_1g033420 36.770 291 166 7 3 277 4 292 4.46e-57 186
MS.gene011681.t1 MTR_5g029100 39.245 265 151 6 21 276 42 305 1.12e-56 186
MS.gene011681.t1 MTR_4g057450 37.970 266 150 7 18 276 47 304 1.57e-55 181
MS.gene011681.t1 MTR_2g095800 36.567 268 148 9 20 276 53 309 3.38e-53 176
MS.gene011681.t1 MTR_8g064180 33.555 301 172 7 2 276 12 310 1.23e-52 174
MS.gene011681.t1 MTR_5g029100 37.544 285 158 8 1 276 1 274 7.53e-52 172
MS.gene011681.t1 MTR_8g090100 36.194 268 154 7 21 277 21 282 1.16e-51 172
MS.gene011681.t1 MTR_1g063020 36.194 268 154 7 17 276 36 294 1.50e-49 166
MS.gene011681.t1 MTR_7g102260 36.604 265 149 9 21 276 37 291 2.27e-49 165
MS.gene011681.t1 MTR_8g479340 37.297 185 54 3 94 276 11 135 1.02e-31 115
MS.gene011681.t1 MTR_4g097650 88.235 51 3 1 1 51 15 62 1.44e-24 94.0
MS.gene011681.t1 MTR_8g032640 32.571 175 111 4 42 215 32 200 7.42e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011681.t1 AT5G65730 74.638 276 64 1 1 276 21 290 2.60e-162 452
MS.gene011681.t1 AT4G37800 74.194 279 66 1 8 280 15 293 3.07e-162 452
MS.gene011681.t1 AT5G13870 50.883 283 129 4 1 276 8 287 9.43e-104 304
MS.gene011681.t1 AT5G13870 50.883 283 129 4 1 276 8 287 9.43e-104 304
MS.gene011681.t1 AT5G13870 50.883 283 129 4 1 276 8 287 9.43e-104 304
MS.gene011681.t1 AT4G03210 53.763 279 121 4 1 276 11 284 2.33e-103 303
MS.gene011681.t1 AT1G11545 51.056 284 129 4 1 276 18 299 5.67e-101 297
MS.gene011681.t1 AT2G06850 51.064 282 130 3 2 276 10 290 9.75e-100 294
MS.gene011681.t1 AT2G14620 50.360 278 130 5 2 276 22 294 9.76e-100 294
MS.gene011681.t1 AT4G03210 55.777 251 104 3 29 276 10 256 1.48e-96 285
MS.gene011681.t1 AT3G23730 48.754 281 134 5 1 276 11 286 9.37e-96 284
MS.gene011681.t1 AT5G57550 48.561 278 136 4 1 276 10 282 1.16e-95 283
MS.gene011681.t1 AT5G57560 47.331 281 135 4 7 279 9 284 8.32e-92 273
MS.gene011681.t1 AT2G06850 56.388 227 97 2 51 276 5 230 8.90e-92 271
MS.gene011681.t1 AT4G14130 48.571 280 133 5 3 276 10 284 7.27e-91 271
MS.gene011681.t1 AT4G25810 47.653 277 141 4 6 279 11 286 3.10e-90 270
MS.gene011681.t1 AT5G57530 49.049 263 124 5 19 276 25 282 3.19e-89 267
MS.gene011681.t1 AT4G13090 47.122 278 141 4 3 276 13 288 9.15e-89 266
MS.gene011681.t1 AT4G30270 48.276 261 119 4 19 278 22 267 1.30e-88 265
MS.gene011681.t1 AT5G57540 48.289 263 126 5 19 276 24 281 7.51e-88 263
MS.gene011681.t1 AT5G48070 46.360 261 131 6 19 276 27 281 1.26e-86 260
MS.gene011681.t1 AT2G14620 52.193 228 105 4 52 276 18 244 8.25e-86 257
MS.gene011681.t1 AT4G25820 47.909 263 127 4 19 276 28 285 1.77e-85 257
MS.gene011681.t1 AT2G18800 45.993 287 138 5 4 276 13 296 3.19e-84 255
MS.gene011681.t1 AT2G14620 52.489 221 101 4 59 276 14 233 4.35e-84 252
MS.gene011681.t1 AT4G13080 46.484 256 134 3 21 276 39 291 2.15e-82 250
MS.gene011681.t1 AT4G30290 44.803 279 143 7 1 276 6 276 4.28e-82 248
MS.gene011681.t1 AT3G25050 43.463 283 149 5 1 276 11 289 1.08e-81 248
MS.gene011681.t1 AT4G28850 43.617 282 147 5 4 276 9 287 3.16e-81 247
MS.gene011681.t1 AT4G30280 44.444 279 144 7 1 276 11 281 5.04e-81 246
MS.gene011681.t1 AT1G65310 46.743 261 130 6 19 276 27 281 8.73e-79 240
MS.gene011681.t1 AT1G65310 46.743 261 130 6 19 276 49 303 1.27e-78 241
MS.gene011681.t1 AT1G32170 37.544 285 168 6 1 277 12 294 6.02e-58 189
MS.gene011681.t1 AT1G14720 42.276 246 130 8 40 277 50 291 3.39e-55 181
MS.gene011681.t1 AT1G10550 36.047 258 149 6 33 276 54 309 2.58e-53 176
MS.gene011681.t1 AT2G01850 36.742 264 161 5 19 277 29 291 2.23e-52 174
MS.gene011681.t1 AT3G48580 37.405 262 144 8 19 278 32 275 2.60e-51 170
MS.gene011681.t1 AT3G44990 35.581 267 153 6 19 276 37 293 5.62e-51 169
MS.gene011681.t1 AT4G18990 35.395 291 163 7 10 277 25 313 6.15e-51 171
MS.gene011681.t1 AT2G36870 36.364 264 151 8 21 276 43 297 4.31e-50 167
MS.gene011681.t1 AT3G48580 38.261 230 123 7 51 278 4 216 6.13e-46 154
MS.gene011681.t1 AT4G18990 34.764 233 125 6 70 277 9 239 1.75e-40 142
MS.gene011681.t1 AT3G48580 33.206 262 135 9 19 278 32 255 5.27e-36 129
MS.gene011681.t1 AT2G36870 41.304 138 72 4 21 151 43 178 1.84e-26 102

Find 58 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCTTGTATACTCTTAT+TGG 0.169777 8.3:+22668853 None:intergenic
CTTGATCAATTTGCTTGATA+TGG 0.190810 8.3:+22669966 None:intergenic
TTCACACTTACTCAATTCTT+TGG 0.200130 8.3:-22669434 MS.gene011681:CDS
CATTATGGGAAGCTGATAAT+TGG 0.203518 8.3:-22668777 MS.gene011681:CDS
ACCCCACATGAGTGTCTTTC+AGG 0.215363 8.3:-22668511 MS.gene011681:CDS
GACATGAAAGTCTTGATTAA+AGG 0.250837 8.3:+22670003 None:intergenic
GTGGATTAGAGAAAATTAAT+TGG 0.259471 8.3:-22668744 MS.gene011681:CDS
CTTTATTTACTTACACAATA+TGG 0.267037 8.3:+22669403 None:intergenic
GAGAACAAAGAGTTAATCTT+TGG 0.282944 8.3:-22669476 MS.gene011681:CDS
TGACACTGTTCGTGATGAAT+TGG 0.356338 8.3:-22669577 MS.gene011681:CDS
TTGATCAATTTGCTTGATAT+GGG 0.378785 8.3:+22669967 None:intergenic
AGACACTCATGTGGGGTCAT+TGG 0.379857 8.3:+22668517 None:intergenic
AAGTCTTGATTAAAGGTTGC+TGG 0.391694 8.3:+22670010 None:intergenic
GCTTACCAGAGCCTTGGTCT+AGG 0.393896 8.3:+22669924 None:intergenic
GACACTCATGTGGGGTCATT+GGG 0.402289 8.3:+22668518 None:intergenic
GGGTTAGTGGCACATGTAGC+TGG 0.417361 8.3:+22668658 None:intergenic
ATTGAAGGATGTGCAATTCC+AGG 0.423415 8.3:-22668682 MS.gene011681:CDS
TCCAAGGTGAAGTACTTGTT+TGG 0.424809 8.3:-22669768 MS.gene011681:CDS
CCTATACCTTCTAGCTTCAA+TGG 0.438940 8.3:+22668594 None:intergenic
TACAAGAACAATGAAGCAAA+AGG 0.440360 8.3:-22668841 MS.gene011681:CDS
ATGTTTGTTTGAACTGTGTA+AGG 0.451638 8.3:+22669522 None:intergenic
ATTATGGGAAGCTGATAATT+GGG 0.454763 8.3:-22668776 MS.gene011681:CDS
CAAACAAACATTTATGCTCA+TGG 0.456844 8.3:-22669510 MS.gene011681:CDS
GTGGCACATGTAGCTGGTCC+TGG 0.458974 8.3:+22668664 None:intergenic
AACATTTATGCTCATGGAAA+GGG 0.466489 8.3:-22669504 MS.gene011681:CDS
AGGTTGCGGGTTTGGTTCCA+AGG 0.488397 8.3:-22669784 MS.gene011681:CDS
AGCCTTGGTCTAGGGTAAGT+TGG 0.505926 8.3:+22669933 None:intergenic
TTAGTGCCATTGAAGCTAGA+AGG 0.511286 8.3:-22668600 MS.gene011681:CDS
CTTACCAGAGCCTTGGTCTA+GGG 0.512113 8.3:+22669925 None:intergenic
TGAGTTCTTGGGAAACCGTA+CGG 0.514708 8.3:-22669550 MS.gene011681:CDS
AAACATTTATGCTCATGGAA+AGG 0.519040 8.3:-22669505 MS.gene011681:CDS
TATGTTGCTTACCAGAGCCT+TGG 0.521244 8.3:+22669918 None:intergenic
ATTATTGTCAAGATAAATCA+AGG 0.521408 8.3:-22668543 MS.gene011681:CDS
CTGTGTAAGGTTGTCCCGTA+CGG 0.522062 8.3:+22669535 None:intergenic
GAGTTCTTGGGAAACCGTAC+GGG 0.532873 8.3:-22669549 MS.gene011681:CDS
CATATCAAGCAAATTGATCA+AGG 0.537805 8.3:-22669965 MS.gene011681:CDS
CTTGTCCCTGGAGATTCTGC+TGG 0.538897 8.3:-22669723 MS.gene011681:CDS
CCATTGAAGCTAGAAGGTAT+AGG 0.547043 8.3:-22668594 MS.gene011681:CDS
TGATCAATTTGCTTGATATG+GGG 0.550945 8.3:+22669968 None:intergenic
ACAGTACCAGCAGAATCTCC+AGG 0.553960 8.3:+22669717 None:intergenic
ACAAGAACAATGAAGCAAAA+GGG 0.563731 8.3:-22668840 MS.gene011681:CDS
GATAATTGGGCAACAAGAGG+TGG 0.576591 8.3:-22668763 MS.gene011681:CDS
TTGAAGCTAGAAGGTATAGG+TGG 0.577676 8.3:-22668591 MS.gene011681:CDS
TCTTTGTAATAAGCATAGAA+AGG 0.586460 8.3:+22668712 None:intergenic
TAAGTGTGAAAGTCAGCAGA+AGG 0.588490 8.3:+22669447 None:intergenic
ATGAAGATTAAACTTGTCCC+TGG 0.591788 8.3:-22669735 MS.gene011681:CDS
ACCAAACAAGTACTTCACCT+TGG 0.605380 8.3:+22669767 None:intergenic
TAATGTTGAAAATACTCCCA+TGG 0.606737 8.3:+22668795 None:intergenic
GACAATAATCATAGATCACA+TGG 0.610597 8.3:+22668557 None:intergenic
TGCCTGAAAGACACTCATGT+GGG 0.615126 8.3:+22668509 None:intergenic
ATCAAGACTTTCATGTCACG+TGG 0.617056 8.3:-22669997 MS.gene011681:CDS
CTTACCCTAGACCAAGGCTC+TGG 0.621562 8.3:-22669929 MS.gene011681:intron
GCTGATAATTGGGCAACAAG+AGG 0.638048 8.3:-22668766 MS.gene011681:CDS
TGAAGCTAGAAGGTATAGGT+GGG 0.659236 8.3:-22668590 MS.gene011681:CDS
GCCTGAAAGACACTCATGTG+GGG 0.659861 8.3:+22668510 None:intergenic
ATGCCTGAAAGACACTCATG+TGG 0.662116 8.3:+22668508 None:intergenic
CAGTACCAGCAGAATCTCCA+GGG 0.665682 8.3:+22669718 None:intergenic
ATCCAACTTACCCTAGACCA+AGG 0.669978 8.3:-22669935 MS.gene011681:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTAGTAAATATATT+AGG + chr8.3:22669297-22669316 None:intergenic 10.0%
!!! TAATGAACTATAATATATTT+TGG + chr8.3:22668697-22668716 None:intergenic 10.0%
!! AATAGTACTATACTATAATT+TGG - chr8.3:22668730-22668749 MS.gene011681:CDS 15.0%
!!! AAAAATATACTTTGATTTTG+TGG - chr8.3:22669617-22669636 MS.gene011681:intron 15.0%
!!! ATAATCTTCTTTTTTTTTTG+TGG - chr8.3:22668948-22668967 MS.gene011681:intron 15.0%
!!! TATAATATATTTTGGACATT+AGG + chr8.3:22668689-22668708 None:intergenic 15.0%
!!! TTTTTGAAATTATAGATAGT+CGG + chr8.3:22669500-22669519 None:intergenic 15.0%
!! AGTTAAATACTTGAACATTA+CGG - chr8.3:22669213-22669232 MS.gene011681:intron 20.0%
!! ATTATGTTTCAAACAAAAAG+TGG + chr8.3:22668907-22668926 None:intergenic 20.0%
!! ATTATTGTCAAGATAAATCA+AGG - chr8.3:22670022-22670041 MS.gene011681:CDS 20.0%
!! ATTTACTAATCATATACCAA+AGG - chr8.3:22669302-22669321 MS.gene011681:intron 20.0%
!!! AGAAGATTATATTCAGTTTT+TGG + chr8.3:22668938-22668957 None:intergenic 20.0%
!!! CTTTATTTACTTACACAATA+TGG + chr8.3:22669165-22669184 None:intergenic 20.0%
!!! TACAAAGATTTTGATATTGA+AGG - chr8.3:22669868-22669887 MS.gene011681:intron 20.0%
! CTTAATAATGCAAAGAATCA+TGG - chr8.3:22669394-22669413 MS.gene011681:intron 25.0%
! TCTTTGTAATAAGCATAGAA+AGG + chr8.3:22669856-22669875 None:intergenic 25.0%
! TTGTTCTTGTATACTCTTAT+TGG + chr8.3:22669715-22669734 None:intergenic 25.0%
!! TAAGTCTTAGAATGCAATTT+TGG + chr8.3:22669643-22669662 None:intergenic 25.0%
!! TTGATCAATTTGCTTGATAT+GGG + chr8.3:22668601-22668620 None:intergenic 25.0%
!!! ATCATCATGTGTTTTTGTTT+GGG - chr8.3:22668527-22668546 MS.gene011681:CDS 25.0%
!!! GTGGATTAGAGAAAATTAAT+TGG - chr8.3:22669821-22669840 MS.gene011681:intron 25.0%
!!! TATCATCATGTGTTTTTGTT+TGG - chr8.3:22668526-22668545 MS.gene011681:CDS 25.0%
!!! TGTTACTTAACTTTTTGCAA+AGG - chr8.3:22668761-22668780 MS.gene011681:CDS 25.0%
AAACATTTATGCTCATGGAA+AGG - chr8.3:22669060-22669079 MS.gene011681:intron 30.0%
AACAACTTTGACAACTAACT+CGG + chr8.3:22669346-22669365 None:intergenic 30.0%
AACATTTATGCTCATGGAAA+GGG - chr8.3:22669061-22669080 MS.gene011681:intron 30.0%
AACTCTTCTAACCACAAATT+TGG + chr8.3:22669248-22669267 None:intergenic 30.0%
ACAAGAACAATGAAGCAAAA+GGG - chr8.3:22669725-22669744 MS.gene011681:CDS 30.0%
ATGTTTGTTTGAACTGTGTA+AGG + chr8.3:22669046-22669065 None:intergenic 30.0%
ATTATGGGAAGCTGATAATT+GGG - chr8.3:22669789-22669808 MS.gene011681:intron 30.0%
CAAACAAACATTTATGCTCA+TGG - chr8.3:22669055-22669074 MS.gene011681:intron 30.0%
CATATCAAGCAAATTGATCA+AGG - chr8.3:22668600-22668619 MS.gene011681:CDS 30.0%
GACAATAATCATAGATCACA+TGG + chr8.3:22670011-22670030 None:intergenic 30.0%
GACATGAAAGTCTTGATTAA+AGG + chr8.3:22668565-22668584 None:intergenic 30.0%
GAGAACAAAGAGTTAATCTT+TGG - chr8.3:22669089-22669108 MS.gene011681:intron 30.0%
TAATGTTGAAAATACTCCCA+TGG + chr8.3:22669773-22669792 None:intergenic 30.0%
TACAAGAACAATGAAGCAAA+AGG - chr8.3:22669724-22669743 MS.gene011681:CDS 30.0%
TCAAGTATTTAACTGCATGT+AGG + chr8.3:22669207-22669226 None:intergenic 30.0%
TTCACACTTACTCAATTCTT+TGG - chr8.3:22669131-22669150 MS.gene011681:intron 30.0%
! CTTGATCAATTTGCTTGATA+TGG + chr8.3:22668602-22668621 None:intergenic 30.0%
! TGATCAATTTGCTTGATATG+GGG + chr8.3:22668600-22668619 None:intergenic 30.0%
! TTAACTTTTTGCAAAGGTTG+CGG - chr8.3:22668767-22668786 MS.gene011681:CDS 30.0%
!! TCATCATGTGTTTTTGTTTG+GGG - chr8.3:22668528-22668547 MS.gene011681:CDS 30.0%
!!! GAATTGGATTTTGAGTTCTT+GGG - chr8.3:22669004-22669023 MS.gene011681:intron 30.0%
!!! GGGAGTATTTTCAACATTAT+GGG - chr8.3:22669774-22669793 MS.gene011681:CDS 30.0%
!!! TGAATTGGATTTTGAGTTCT+TGG - chr8.3:22669003-22669022 MS.gene011681:intron 30.0%
!!! TGGGAGTATTTTCAACATTA+TGG - chr8.3:22669773-22669792 MS.gene011681:CDS 30.0%
AAGTCTTGATTAAAGGTTGC+TGG + chr8.3:22668558-22668577 None:intergenic 35.0%
ATGAAGATTAAACTTGTCCC+TGG - chr8.3:22668830-22668849 MS.gene011681:CDS 35.0%
CACTAACCCAAAAAATTGGT+GGG - chr8.3:22669921-22669940 MS.gene011681:intron 35.0%
CATTATGGGAAGCTGATAAT+TGG - chr8.3:22669788-22669807 MS.gene011681:intron 35.0%
TCTAACCACAAATTTGGACA+CGG + chr8.3:22669242-22669261 None:intergenic 35.0%
! TAACTTTTTGCAAAGGTTGC+GGG - chr8.3:22668768-22668787 MS.gene011681:CDS 35.0%
AACCCAAAAAATTGGTGGGA+AGG - chr8.3:22669925-22669944 MS.gene011681:intron 40.0%
ACCAAACAAGTACTTCACCT+TGG + chr8.3:22668801-22668820 None:intergenic 40.0%
ACCCAAAAAATTGGTGGGAA+GGG - chr8.3:22669926-22669945 MS.gene011681:intron 40.0%
ATACCCAAAAATGCAAGCCA+TGG - chr8.3:22669753-22669772 MS.gene011681:CDS 40.0%
ATCAAGACTTTCATGTCACG+TGG - chr8.3:22668568-22668587 MS.gene011681:CDS 40.0%
ATTGAAGGATGTGCAATTCC+AGG - chr8.3:22669883-22669902 MS.gene011681:intron 40.0%
CAAATGTGGCTAACAACCTT+TGG + chr8.3:22669321-22669340 None:intergenic 40.0%
CAACTAACTCGGTTCAAATG+TGG + chr8.3:22669335-22669354 None:intergenic 40.0%
CCACTAACCCAAAAAATTGG+TGG - chr8.3:22669920-22669939 MS.gene011681:intron 40.0%
TAAGTGTGAAAGTCAGCAGA+AGG + chr8.3:22669121-22669140 None:intergenic 40.0%
TACCCAAAAATGCAAGCCAT+GGG - chr8.3:22669754-22669773 MS.gene011681:CDS 40.0%
TGACACTGTTCGTGATGAAT+TGG - chr8.3:22668988-22669007 MS.gene011681:intron 40.0%
! CCATTGAAGCTAGAAGGTAT+AGG - chr8.3:22669971-22669990 MS.gene011681:CDS 40.0%
! GTGCCACTAACCCAAAAAAT+TGG - chr8.3:22669917-22669936 MS.gene011681:intron 40.0%
! TCCAAGGTGAAGTACTTGTT+TGG - chr8.3:22668797-22668816 MS.gene011681:CDS 40.0%
! TGAAGCTAGAAGGTATAGGT+GGG - chr8.3:22669975-22669994 MS.gene011681:CDS 40.0%
! TTAGTGCCATTGAAGCTAGA+AGG - chr8.3:22669965-22669984 MS.gene011681:CDS 40.0%
! TTGAAGCTAGAAGGTATAGG+TGG - chr8.3:22669974-22669993 MS.gene011681:CDS 40.0%
!! CCTATACCTTCTAGCTTCAA+TGG + chr8.3:22669974-22669993 None:intergenic 40.0%
!!! ATGGCTTGCATTTTTGGGTA+TGG + chr8.3:22669754-22669773 None:intergenic 40.0%
!!! CCACCAATTTTTTGGGTTAG+TGG + chr8.3:22669923-22669942 None:intergenic 40.0%
ATCAACGTAGAAGCTGCATG+TGG + chr8.3:22669686-22669705 None:intergenic 45.0%
ATCCAACTTACCCTAGACCA+AGG - chr8.3:22668630-22668649 MS.gene011681:CDS 45.0%
ATGCCTGAAAGACACTCATG+TGG + chr8.3:22670060-22670079 None:intergenic 45.0%
CCCAAAAAATTGGTGGGAAG+GGG - chr8.3:22669927-22669946 MS.gene011681:intron 45.0%
GATAATTGGGCAACAAGAGG+TGG - chr8.3:22669802-22669821 MS.gene011681:intron 45.0%
GCTGATAATTGGGCAACAAG+AGG - chr8.3:22669799-22669818 MS.gene011681:intron 45.0%
GGTAACCGTGTCCAAATTTG+TGG - chr8.3:22669234-22669253 MS.gene011681:intron 45.0%
GTAGAAGCTGCATGTGGTTA+AGG + chr8.3:22669680-22669699 None:intergenic 45.0%
TGAGTTCTTGGGAAACCGTA+CGG - chr8.3:22669015-22669034 MS.gene011681:intron 45.0%
TGCCTGAAAGACACTCATGT+GGG + chr8.3:22670059-22670078 None:intergenic 45.0%
! TATGTTGCTTACCAGAGCCT+TGG + chr8.3:22668650-22668669 None:intergenic 45.0%
! TTTTGCAAAGGTTGCGGGTT+TGG - chr8.3:22668773-22668792 MS.gene011681:CDS 45.0%
!! ACTCCCATGGCTTGCATTTT+TGG + chr8.3:22669760-22669779 None:intergenic 45.0%
!! CTCCCATGGCTTGCATTTTT+GGG + chr8.3:22669759-22669778 None:intergenic 45.0%
!!! ACCCCTTCCCACCAATTTTT+TGG + chr8.3:22669931-22669950 None:intergenic 45.0%
!!! CCCCTTCCCACCAATTTTTT+GGG + chr8.3:22669930-22669949 None:intergenic 45.0%
!!! TAAATAAATAAATCTAATTT+TGG - chr8.3:22669521-22669540 MS.gene011681:CDS 5.0%
ACAGTACCAGCAGAATCTCC+AGG + chr8.3:22668851-22668870 None:intergenic 50.0%
ACCCCACATGAGTGTCTTTC+AGG - chr8.3:22670054-22670073 MS.gene011681:CDS 50.0%
AGACACTCATGTGGGGTCAT+TGG + chr8.3:22670051-22670070 None:intergenic 50.0%
CAGTACCAGCAGAATCTCCA+GGG + chr8.3:22668850-22668869 None:intergenic 50.0%
CTGTGTAAGGTTGTCCCGTA+CGG + chr8.3:22669033-22669052 None:intergenic 50.0%
CTTACCAGAGCCTTGGTCTA+GGG + chr8.3:22668643-22668662 None:intergenic 50.0%
GACACTCATGTGGGGTCATT+GGG + chr8.3:22670050-22670069 None:intergenic 50.0%
GAGTTCTTGGGAAACCGTAC+GGG - chr8.3:22669016-22669035 MS.gene011681:intron 50.0%
GCCTGAAAGACACTCATGTG+GGG + chr8.3:22670058-22670077 None:intergenic 50.0%
! AGCCTTGGTCTAGGGTAAGT+TGG + chr8.3:22668635-22668654 None:intergenic 50.0%
CTTACCCTAGACCAAGGCTC+TGG - chr8.3:22668636-22668655 MS.gene011681:CDS 55.0%
CTTGTCCCTGGAGATTCTGC+TGG - chr8.3:22668842-22668861 MS.gene011681:CDS 55.0%
GCTTACCAGAGCCTTGGTCT+AGG + chr8.3:22668644-22668663 None:intergenic 55.0%
! AGGTTGCGGGTTTGGTTCCA+AGG - chr8.3:22668781-22668800 MS.gene011681:CDS 55.0%
! GGGTTAGTGGCACATGTAGC+TGG + chr8.3:22669910-22669929 None:intergenic 55.0%
GTGGCACATGTAGCTGGTCC+TGG + chr8.3:22669904-22669923 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 22668504 22670083 22668504 ID=MS.gene011681
chr8.3 mRNA 22668504 22670083 22668504 ID=MS.gene011681.t1;Parent=MS.gene011681
chr8.3 exon 22669930 22670083 22669930 ID=MS.gene011681.t1.exon1;Parent=MS.gene011681.t1
chr8.3 CDS 22669930 22670083 22669930 ID=cds.MS.gene011681.t1;Parent=MS.gene011681.t1
chr8.3 exon 22669704 22669804 22669704 ID=MS.gene011681.t1.exon2;Parent=MS.gene011681.t1
chr8.3 CDS 22669704 22669804 22669704 ID=cds.MS.gene011681.t1;Parent=MS.gene011681.t1
chr8.3 exon 22669417 22669613 22669417 ID=MS.gene011681.t1.exon3;Parent=MS.gene011681.t1
chr8.3 CDS 22669417 22669613 22669417 ID=cds.MS.gene011681.t1;Parent=MS.gene011681.t1
chr8.3 exon 22668504 22668894 22668504 ID=MS.gene011681.t1.exon4;Parent=MS.gene011681.t1
chr8.3 CDS 22668504 22668894 22668504 ID=cds.MS.gene011681.t1;Parent=MS.gene011681.t1
Gene Sequence

>MS.gene011681

ATGTTGTTGATGTGGATTCTCTTATCATCATGTGTTTTTGTTTGGGGACGACCAGCAACCTTTAATCAAGACTTTCATGTCACGTGGTCTGAACCCCATATCAAGCAAATTGATCAAGGCAGAACTATCCAACTTACCCTAGACCAAGGCTCTGGTAAGCAACATATATTATATTATACACTCCTAATGTCCAAAATATATTATAGTTCATTAAACATAAATAACAAATAGTACTATACTATAATTTGGATAAGTCATGTTACTTAACTTTTTGCAAAGGTTGCGGGTTTGGTTCCAAGGTGAAGTACTTGTTTGGTCGTGTTAGCATGAAGATTAAACTTGTCCCTGGAGATTCTGCTGGTACTGTTACTGCATTTTATGTAAGTTCAAACTAATTTCTCCACTTTTTGTTTGAAACATAATTAAATGAGCCAAAAACTGAATATAATCTTCTTTTTTTTTTGTGGTAGATGAACTCTGATACTGACACTGTTCGTGATGAATTGGATTTTGAGTTCTTGGGAAACCGTACGGGACAACCTTACACAGTTCAAACAAACATTTATGCTCATGGAAAGGGTGATAGAGAACAAAGAGTTAATCTTTGGTTTGATCCTTCTGCTGACTTTCACACTTACTCAATTCTTTGGAATCATCACCATATTGTGTAAGTAAATAAAGATAAGCATAAGCGTTCAAACCTACATGCAGTTAAATACTTGAACATTACGGTAACCGTGTCCAAATTTGTGGTTAGAAGAGTTACATTGTTAGTTAATAAATTTAGACACCTAATATATTTACTAATCATATACCAAAGGTTGTTAGCCACATTTGAACCGAGTTAGTTGTCAAAGTTGTTTGAGTTTAATTGTTCAAAAATCTTTTCTCTTAATAATGCAAAGAATCATGGTTAGACATTGCTGACTAATACAAGACAAGAAAGAAAAATAAATAGCGATGACAGAAATTTATAGTAGAAATATGTAAAATCCGACTATCTATAATTTCAAAAAATAAATAAATAAATCTAATTTTGGTCACTTACTATAATTTTAATACATGACTACAATCACTTATTACTTATAGTCACAATGTTGTCGCATAATCATAAAAAATATACTTTGATTTTGTGGCCAAAATTGCATTCTAAGACTTAAGACTTACGTAAGACCTTAACCACATGCAGCTTCTACGTTGATGAAGTTCCAATAAGAGTATACAAGAACAATGAAGCAAAAGGGATACCATACCCAAAAATGCAAGCCATGGGAGTATTTTCAACATTATGGGAAGCTGATAATTGGGCAACAAGAGGTGGATTAGAGAAAATTAATTGGAGTAAAGCACCTTTCTATGCTTATTACAAAGATTTTGATATTGAAGGATGTGCAATTCCAGGACCAGCTACATGTGCCACTAACCCAAAAAATTGGTGGGAAGGGGTTGAATATCAAGCTCTTAGTGCCATTGAAGCTAGAAGGTATAGGTGGGTTCGTATGAACCATGTGATCTATGATTATTGTCAAGATAAATCAAGGTACCCAATGACCCCACATGAGTGTCTTTCAGGCATTTAA
Protein sequence

>MS.gene011681.t1

MLLMWILLSSCVFVWGRPATFNQDFHVTWSEPHIKQIDQGRTIQLTLDQGSGCGFGSKVKYLFGRVSMKIKLVPGDSAGTVTAFYMNSDTDTVRDELDFEFLGNRTGQPYTVQTNIYAHGKGDREQRVNLWFDPSADFHTYSILWNHHHIVFYVDEVPIRVYKNNEAKGIPYPKMQAMGVFSTLWEADNWATRGGLEKINWSKAPFYAYYKDFDIEGCAIPGPATCATNPKNWWEGVEYQALSAIEARRYRWVRMNHVIYDYCQDKSRYPMTPHECLSGI