AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60167

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60167.t1 MTR_4g097640 98.917 277 3 0 1 277 15 291 0.0 581
MS.gene60167.t1 MTR_4g097670 98.917 277 3 0 1 277 15 291 0.0 581
MS.gene60167.t1 MTR_4g097700 99.240 263 2 0 15 277 66 328 0.0 557
MS.gene60167.t1 MTR_7g084770 53.405 279 122 3 2 273 10 287 1.34e-104 306
MS.gene60167.t1 MTR_7g084760 53.763 279 121 4 2 273 10 287 5.04e-104 305
MS.gene60167.t1 MTR_6g033085 52.688 279 125 3 1 273 10 287 1.26e-102 301
MS.gene60167.t1 MTR_6g033055 51.971 279 127 3 1 273 10 287 3.29e-102 300
MS.gene60167.t1 MTR_7g084750 53.307 257 118 2 18 273 32 287 1.44e-101 298
MS.gene60167.t1 MTR_1g105900 53.668 259 116 4 18 273 34 291 1.87e-101 298
MS.gene60167.t1 MTR_4g045853 49.645 282 130 4 2 274 11 289 2.48e-100 295
MS.gene60167.t1 MTR_2g089140 51.866 268 117 3 16 274 23 287 3.22e-100 295
MS.gene60167.t1 MTR_1g105495 53.053 262 119 2 16 273 33 294 5.88e-100 295
MS.gene60167.t1 MTR_4g128410 50.000 278 130 6 1 273 7 280 1.02e-96 286
MS.gene60167.t1 MTR_4g126920 50.570 263 121 4 16 273 23 281 4.52e-94 279
MS.gene60167.t1 MTR_8g013055 52.308 260 117 5 18 274 31 286 1.42e-93 278
MS.gene60167.t1 MTR_7g093530 47.842 278 134 5 3 274 8 280 3.40e-93 276
MS.gene60167.t1 MTR_4g128580 50.365 274 127 5 5 273 16 285 7.43e-92 273
MS.gene60167.t1 MTR_6g088320 48.043 281 138 5 1 276 9 286 3.03e-91 272
MS.gene60167.t1 MTR_2g038860 45.423 284 142 4 1 275 9 288 3.68e-91 272
MS.gene60167.t1 MTR_2g038705 45.423 284 142 4 1 275 9 288 3.68e-91 272
MS.gene60167.t1 MTR_3g084620 48.364 275 133 4 1 273 10 277 1.04e-90 270
MS.gene60167.t1 MTR_3g084630 48.364 275 133 4 1 273 10 277 1.16e-90 270
MS.gene60167.t1 MTR_8g102910 48.540 274 133 5 6 274 10 280 1.47e-90 270
MS.gene60167.t1 MTR_4g128400 48.828 256 129 2 20 274 30 284 1.50e-90 270
MS.gene60167.t1 MTR_2g089140 54.667 225 92 2 59 274 1 224 2.93e-90 267
MS.gene60167.t1 MTR_8g081040 49.091 275 132 5 1 273 13 281 5.22e-90 268
MS.gene60167.t1 MTR_4g128570 48.188 276 124 5 2 273 12 272 7.99e-90 268
MS.gene60167.t1 MTR_8g102220 44.727 275 131 5 1 273 11 266 7.98e-79 240
MS.gene60167.t1 MTR_4g128590 42.657 286 131 6 1 273 10 275 2.87e-78 238
MS.gene60167.t1 MTR_7g056090 44.906 265 141 4 2 265 16 276 3.66e-78 238
MS.gene60167.t1 MTR_5g091730 42.336 274 151 3 1 273 11 278 1.08e-73 227
MS.gene60167.t1 MTR_3g089540 45.000 260 136 4 16 273 28 282 4.48e-71 221
MS.gene60167.t1 MTR_2g049030 41.107 253 138 7 18 267 30 274 1.33e-66 209
MS.gene60167.t1 MTR_2g049130 43.443 244 133 5 18 260 29 268 1.30e-65 206
MS.gene60167.t1 MTR_1g033420 42.387 243 133 6 37 274 52 292 1.91e-57 187
MS.gene60167.t1 MTR_5g029100 38.868 265 152 5 18 273 42 305 3.19e-57 187
MS.gene60167.t1 MTR_4g057450 36.803 269 149 7 15 273 47 304 6.44e-55 179
MS.gene60167.t1 MTR_2g095800 36.567 268 148 9 17 273 53 309 4.49e-54 177
MS.gene60167.t1 MTR_5g029100 40.948 232 127 5 51 273 44 274 3.68e-52 173
MS.gene60167.t1 MTR_8g090100 36.194 268 154 7 18 274 21 282 1.14e-51 172
MS.gene60167.t1 MTR_8g064180 34.459 296 165 8 4 273 18 310 2.42e-51 171
MS.gene60167.t1 MTR_1g063020 36.264 273 147 8 14 273 36 294 4.16e-50 167
MS.gene60167.t1 MTR_7g102260 36.364 264 151 8 18 273 37 291 1.41e-49 166
MS.gene60167.t1 MTR_8g479340 37.297 185 54 3 91 273 11 135 3.66e-32 115
MS.gene60167.t1 MTR_4g097650 97.917 48 1 0 1 48 15 62 1.74e-27 101
MS.gene60167.t1 MTR_8g032640 32.571 175 111 4 39 212 32 200 3.44e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60167.t1 AT5G65730 75.646 271 66 0 3 273 20 290 9.81e-163 453
MS.gene60167.t1 AT4G37800 74.007 277 72 0 1 277 17 293 1.25e-161 451
MS.gene60167.t1 AT5G13870 51.971 279 126 3 2 273 10 287 2.77e-105 308
MS.gene60167.t1 AT5G13870 51.971 279 126 3 2 273 10 287 2.77e-105 308
MS.gene60167.t1 AT5G13870 51.971 279 126 3 2 273 10 287 2.77e-105 308
MS.gene60167.t1 AT4G03210 54.122 279 117 5 1 273 11 284 6.00e-104 304
MS.gene60167.t1 AT2G14620 51.273 275 129 4 2 273 22 294 1.56e-101 298
MS.gene60167.t1 AT1G11545 52.190 274 120 5 9 273 28 299 2.84e-100 295
MS.gene60167.t1 AT2G06850 51.418 282 127 4 1 273 10 290 3.69e-100 295
MS.gene60167.t1 AT4G03210 56.175 251 103 3 26 273 10 256 6.52e-98 288
MS.gene60167.t1 AT3G23730 49.104 279 134 5 2 273 9 286 7.28e-96 284
MS.gene60167.t1 AT5G57550 50.769 260 121 4 16 273 28 282 5.07e-95 281
MS.gene60167.t1 AT5G57560 47.535 284 133 5 1 276 9 284 2.65e-92 275
MS.gene60167.t1 AT2G06850 56.388 227 97 2 48 273 5 230 3.06e-92 273
MS.gene60167.t1 AT4G14130 48.551 276 133 5 2 273 14 284 1.13e-91 273
MS.gene60167.t1 AT4G25810 48.043 281 131 6 2 275 13 285 8.20e-91 271
MS.gene60167.t1 AT4G30270 47.601 271 126 5 6 275 12 267 8.09e-90 268
MS.gene60167.t1 AT5G57530 48.669 263 125 5 16 273 25 282 3.12e-89 267
MS.gene60167.t1 AT4G13090 47.292 277 140 4 1 273 14 288 8.30e-89 266
MS.gene60167.t1 AT5G57540 47.909 263 127 5 16 273 24 281 7.28e-88 263
MS.gene60167.t1 AT2G14620 52.193 228 105 3 49 273 18 244 2.17e-87 261
MS.gene60167.t1 AT5G48070 44.404 277 143 7 2 273 11 281 1.12e-86 260
MS.gene60167.t1 AT2G14620 52.489 221 101 3 56 273 14 233 2.01e-85 255
MS.gene60167.t1 AT4G25820 47.529 263 128 4 16 273 28 285 2.31e-85 257
MS.gene60167.t1 AT2G18800 47.037 270 128 4 18 273 28 296 4.63e-84 254
MS.gene60167.t1 AT4G13080 46.094 256 135 3 18 273 39 291 2.70e-82 249
MS.gene60167.t1 AT4G30290 44.928 276 143 6 1 273 7 276 5.45e-82 248
MS.gene60167.t1 AT4G28850 44.326 282 143 6 3 273 9 287 1.60e-81 247
MS.gene60167.t1 AT3G25050 43.816 283 145 6 1 273 11 289 1.97e-81 247
MS.gene60167.t1 AT4G30280 43.841 276 146 6 1 273 12 281 5.78e-80 243
MS.gene60167.t1 AT1G65310 46.360 261 131 6 16 273 27 281 1.20e-78 239
MS.gene60167.t1 AT1G65310 46.360 261 131 6 16 273 49 303 1.43e-78 240
MS.gene60167.t1 AT1G14720 39.544 263 151 6 18 274 31 291 1.62e-56 184
MS.gene60167.t1 AT1G32170 37.676 284 165 7 1 274 13 294 2.34e-56 184
MS.gene60167.t1 AT3G48580 38.168 262 142 8 16 275 32 275 3.27e-53 174
MS.gene60167.t1 AT1G10550 37.209 258 146 7 30 273 54 309 3.80e-53 175
MS.gene60167.t1 AT2G01850 36.742 264 161 5 16 274 29 291 5.38e-53 176
MS.gene60167.t1 AT3G44990 35.849 265 155 5 16 273 37 293 3.75e-51 169
MS.gene60167.t1 AT4G18990 35.484 279 159 6 15 274 37 313 4.98e-51 171
MS.gene60167.t1 AT2G36870 36.431 269 144 10 18 273 43 297 5.19e-50 167
MS.gene60167.t1 AT3G48580 39.130 230 121 7 48 275 4 216 7.14e-48 159
MS.gene60167.t1 AT4G18990 37.500 200 106 5 92 274 42 239 3.53e-40 141
MS.gene60167.t1 AT3G48580 33.969 262 133 9 16 275 32 255 6.09e-38 134
MS.gene60167.t1 AT2G36870 41.304 138 72 4 18 148 43 178 6.06e-27 103

Find 64 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATCAATTTGCTTGATA+TGG 0.190810 8.2:-24365577 None:intergenic
TTCATACTTACTCCATTCTT+TGG 0.196067 8.2:+24366135 MS.gene60167:CDS
CATTATGGGAAGCTGATAAT+TGG 0.203518 8.2:+24367093 MS.gene60167:CDS
ACCCCACATGAGTGTCTTTC+AGG 0.215363 8.2:+24367359 MS.gene60167:CDS
TTGTTCTTGTATACTCTAAT+AGG 0.231975 8.2:-24367017 None:intergenic
GTGGATTAGAGAAAATTAAT+TGG 0.259471 8.2:+24367126 MS.gene60167:CDS
ATATTCGTTTGAACTGTATA+TGG 0.285858 8.2:-24366047 None:intergenic
GAGAACAAAGGGTTAATCTT+TGG 0.288208 8.2:+24366093 MS.gene60167:CDS
GATTCTCGTATCATCTGTTT+GGG 0.291482 8.2:+24365505 MS.gene60167:CDS
GGATTCTCGTATCATCTGTT+TGG 0.321932 8.2:+24365504 MS.gene60167:CDS
AAGTCTTGATTAAAAGTTGC+TGG 0.378416 8.2:-24365533 None:intergenic
TTGATCAATTTGCTTGATAT+GGG 0.378785 8.2:-24365576 None:intergenic
AGACACTCATGTGGGGTCAT+TGG 0.379857 8.2:-24367353 None:intergenic
GAGTTCTTGGGAAACCGTAC+TGG 0.398600 8.2:+24366020 MS.gene60167:CDS
GACACTCATGTGGGGTCATT+GGG 0.402289 8.2:-24367352 None:intergenic
AGGTTGTGGGTTTGCTTCCA+AGG 0.412831 8.2:+24365781 MS.gene60167:intron
GGGTTAGTGGCACATGTAGT+TGG 0.414336 8.2:-24367212 None:intergenic
ATTGAAGGATGTGCAATTCC+AGG 0.423415 8.2:+24367188 MS.gene60167:CDS
TCCAAGGTGAAATACTTGTT+TGG 0.434603 8.2:+24365797 MS.gene60167:CDS
CAAACGAATATTTATGCTCA+TGG 0.438237 8.2:+24366059 MS.gene60167:CDS
CCTATACCTTCTAGCTTCAA+TGG 0.438940 8.2:-24367276 None:intergenic
TACAAGAACAATGAAGCAAA+AGG 0.440360 8.2:+24367029 MS.gene60167:CDS
ACTTACCAGAGCCTTGGTCT+AGG 0.447851 8.2:-24365619 None:intergenic
ATTATGGGAAGCTGATAATT+GGG 0.454763 8.2:+24367094 MS.gene60167:CDS
AATATTTATGCTCATGGAAA+GGG 0.474052 8.2:+24366065 MS.gene60167:CDS
GTGGCACATGTAGTTGGTCC+TGG 0.486861 8.2:-24367206 None:intergenic
CTTGTCCCTGGAGATTCTGC+TGG 0.493939 8.2:+24365842 MS.gene60167:CDS
AGCCTTGGTCTAGGGTAAGT+TGG 0.505926 8.2:-24365610 None:intergenic
ACCTTTCTATGCTTATTACA+AGG 0.510047 8.2:+24367157 MS.gene60167:CDS
TTAGTGCCATTGAAGCTAGA+AGG 0.511286 8.2:+24367270 MS.gene60167:CDS
CTTACCAGAGCCTTGGTCTA+GGG 0.518702 8.2:-24365618 None:intergenic
ATTATTGTCAAGATAAATCA+AGG 0.521408 8.2:+24367327 MS.gene60167:CDS
ATGGTGATGATTCCAAAGAA+TGG 0.527370 8.2:-24366147 None:intergenic
ACGGTTCCAGCAGAATCTCC+AGG 0.531704 8.2:-24365848 None:intergenic
CTGTATATGGTTGCCCAGTA+CGG 0.532005 8.2:-24366034 None:intergenic
GAATATTTATGCTCATGGAA+AGG 0.532200 8.2:+24366064 MS.gene60167:CDS
TATGTTACTTACCAGAGCCT+TGG 0.535649 8.2:-24365625 None:intergenic
CATATCAAGCAAATTGATCA+AGG 0.537805 8.2:+24365578 MS.gene60167:CDS
CCATTGAAGCTAGAAGGTAT+AGG 0.547043 8.2:+24367276 MS.gene60167:CDS
TGATCAATTTGCTTGATATG+GGG 0.550945 8.2:-24365575 None:intergenic
AGTTCTTGGGAAACCGTACT+GGG 0.556815 8.2:+24366021 MS.gene60167:CDS
ACAAGAACAATGAAGCAAAA+GGG 0.563731 8.2:+24367030 MS.gene60167:CDS
AAAGGGTGATAGAGAACAAA+GGG 0.564292 8.2:+24366082 MS.gene60167:CDS
TCCTTGTAATAAGCATAGAA+AGG 0.566971 8.2:-24367158 None:intergenic
TGACAGTGTTCGTGATGAGT+TGG 0.575375 8.2:+24365992 MS.gene60167:CDS
TAAGTATGAAAGTCAGCAGA+AGG 0.575925 8.2:-24366122 None:intergenic
GATAATTGGGCAACAAGAGG+TGG 0.576591 8.2:+24367107 MS.gene60167:CDS
TTGAAGCTAGAAGGTATAGG+TGG 0.577676 8.2:+24367279 MS.gene60167:CDS
ATGAAGATTAAACTTGTCCC+TGG 0.591788 8.2:+24365830 MS.gene60167:CDS
ACCAAACAAGTATTTCACCT+TGG 0.606385 8.2:-24365798 None:intergenic
TAATGTTGAAAATACTCCCA+TGG 0.606737 8.2:-24367075 None:intergenic
GACAATAATCATAGATCACA+TGG 0.610597 8.2:-24367313 None:intergenic
ACTTACATAAAATGCAGTAA+CGG 0.613772 8.2:-24365867 None:intergenic
TGCCTGAAAGACACTCATGT+GGG 0.615126 8.2:-24367361 None:intergenic
ATCAAGACTTTCATGTCACG+TGG 0.617056 8.2:+24365546 MS.gene60167:CDS
CTTACCCTAGACCAAGGCTC+TGG 0.621562 8.2:+24365614 MS.gene60167:CDS
CGGTTCCAGCAGAATCTCCA+GGG 0.633327 8.2:-24365847 None:intergenic
GCTGATAATTGGGCAACAAG+AGG 0.638048 8.2:+24367104 MS.gene60167:CDS
ATTCTCGTATCATCTGTTTG+GGG 0.653006 8.2:+24365506 MS.gene60167:CDS
TGAAGCTAGAAGGTATAGGT+GGG 0.659236 8.2:+24367280 MS.gene60167:CDS
GCCTGAAAGACACTCATGTG+GGG 0.659861 8.2:-24367360 None:intergenic
ATGCCTGAAAGACACTCATG+TGG 0.662116 8.2:-24367362 None:intergenic
ATCCAACTTACCCTAGACCA+AGG 0.669978 8.2:+24365608 MS.gene60167:CDS
GAAAGGGTGATAGAGAACAA+AGG 0.672872 8.2:+24366081 MS.gene60167:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACTATACTAATATAATT+TGG + chr8.2:24365709-24365728 MS.gene60167:intron 10.0%
!! TAAAAGTAAATGAAATGTAT+AGG + chr8.2:24366749-24366768 MS.gene60167:intron 15.0%
!!! AATTTTTTTGTTCAAATAGA+TGG + chr8.2:24366334-24366353 MS.gene60167:intron 15.0%
!!! AGTATTTTTGATAGATAAAT+AGG - chr8.2:24365748-24365767 None:intergenic 15.0%
!!! ATATTTTTACTTACACAATA+TGG - chr8.2:24366169-24366188 None:intergenic 15.0%
!!! TGAATATATTTTTCATTTTG+TGG + chr8.2:24365952-24365971 MS.gene60167:intron 15.0%
!! AAGTGTGACTATAATTAATT+AGG - chr8.2:24366839-24366858 None:intergenic 20.0%
!! AGTTTAGTAGCTATAATTTA+AGG - chr8.2:24366723-24366742 None:intergenic 20.0%
!! ATTATTGTCAAGATAAATCA+AGG + chr8.2:24367327-24367346 MS.gene60167:CDS 20.0%
!! ATTTACCATGAATTTAAATG+TGG - chr8.2:24366608-24366627 None:intergenic 20.0%
!! TTTAGTGAAGAAATTAAAGA+TGG - chr8.2:24366799-24366818 None:intergenic 20.0%
!!! AAATACTAAATTTTTTGCAC+AGG + chr8.2:24365761-24365780 MS.gene60167:intron 20.0%
!!! ACATTTCATTTACTTTTACA+TGG - chr8.2:24366747-24366766 None:intergenic 20.0%
!!! TTTGTTATCTTCACTATATA+TGG + chr8.2:24366357-24366376 MS.gene60167:intron 20.0%
! AAATGTGGTTAACCATAATA+GGG - chr8.2:24366593-24366612 None:intergenic 25.0%
! AATATTTATGCTCATGGAAA+GGG + chr8.2:24366065-24366084 MS.gene60167:CDS 25.0%
! ACTTACATAAAATGCAGTAA+CGG - chr8.2:24365870-24365889 None:intergenic 25.0%
! ATATTCGTTTGAACTGTATA+TGG - chr8.2:24366050-24366069 None:intergenic 25.0%
! ATTATGATTCAAACAAAGAG+TGG - chr8.2:24365907-24365926 None:intergenic 25.0%
! GTTAACCACATTTAAATTCA+TGG + chr8.2:24366600-24366619 MS.gene60167:intron 25.0%
! TAAATGTGGTTAACCATAAT+AGG - chr8.2:24366594-24366613 None:intergenic 25.0%
! TTACATAATACATGAAGTGT+TGG + chr8.2:24366667-24366686 MS.gene60167:intron 25.0%
! TTAGTAGCTATAATTTAAGG+TGG - chr8.2:24366720-24366739 None:intergenic 25.0%
! TTGTTCTTGTATACTCTAAT+AGG - chr8.2:24367020-24367039 None:intergenic 25.0%
!! TAATTTAAGGTGGATATATG+AGG - chr8.2:24366710-24366729 None:intergenic 25.0%
!! TACATAATACATGAAGTGTT+GGG + chr8.2:24366668-24366687 MS.gene60167:intron 25.0%
!! TTGATCAATTTGCTTGATAT+GGG - chr8.2:24365579-24365598 None:intergenic 25.0%
!!! GTGGATTAGAGAAAATTAAT+TGG + chr8.2:24367126-24367145 MS.gene60167:CDS 25.0%
!!! TACAAGGATTTTGATATTGA+AGG + chr8.2:24367173-24367192 MS.gene60167:CDS 25.0%
!!! TATCATATATTTTGGACATC+TGG - chr8.2:24365668-24365687 None:intergenic 25.0%
AAGTCTTGATTAAAAGTTGC+TGG - chr8.2:24365536-24365555 None:intergenic 30.0%
ACAAGAACAATGAAGCAAAA+GGG + chr8.2:24367030-24367049 MS.gene60167:CDS 30.0%
ACCTTTCTATGCTTATTACA+AGG + chr8.2:24367157-24367176 MS.gene60167:CDS 30.0%
ATTATGGGAAGCTGATAATT+GGG + chr8.2:24367094-24367113 MS.gene60167:CDS 30.0%
CAAACGAATATTTATGCTCA+TGG + chr8.2:24366059-24366078 MS.gene60167:CDS 30.0%
CATATCAAGCAAATTGATCA+AGG + chr8.2:24365578-24365597 MS.gene60167:CDS 30.0%
GAAATTAAAGATGGTTGGAT+TGG - chr8.2:24366790-24366809 None:intergenic 30.0%
GAATATTTATGCTCATGGAA+AGG + chr8.2:24366064-24366083 MS.gene60167:CDS 30.0%
GACAATAATCATAGATCACA+TGG - chr8.2:24367316-24367335 None:intergenic 30.0%
GTGAAGAAATTAAAGATGGT+TGG - chr8.2:24366795-24366814 None:intergenic 30.0%
TAATGTTGAAAATACTCCCA+TGG - chr8.2:24367078-24367097 None:intergenic 30.0%
TACAAGAACAATGAAGCAAA+AGG + chr8.2:24367029-24367048 MS.gene60167:CDS 30.0%
TCCTTGTAATAAGCATAGAA+AGG - chr8.2:24367161-24367180 None:intergenic 30.0%
TTCATACTTACTCCATTCTT+TGG + chr8.2:24366135-24366154 MS.gene60167:CDS 30.0%
! CTTGATCAATTTGCTTGATA+TGG - chr8.2:24365580-24365599 None:intergenic 30.0%
! TGATCAATTTGCTTGATATG+GGG - chr8.2:24365578-24365597 None:intergenic 30.0%
!!! AAATTTTTTGCACAGGTTGT+GGG + chr8.2:24365768-24365787 MS.gene60167:intron 30.0%
!!! GGGAGTATTTTCAACATTAT+GGG + chr8.2:24367079-24367098 MS.gene60167:CDS 30.0%
!!! TAAATTTTTTGCACAGGTTG+TGG + chr8.2:24365767-24365786 MS.gene60167:intron 30.0%
!!! TGGGAGTATTTTCAACATTA+TGG + chr8.2:24367078-24367097 MS.gene60167:CDS 30.0%
AAAACCTTGAATACACATGC+AGG + chr8.2:24366976-24366995 MS.gene60167:intron 35.0%
AAAGGGTGATAGAGAACAAA+GGG + chr8.2:24366082-24366101 MS.gene60167:CDS 35.0%
AAGTTTGCATGTCCCTATTA+TGG + chr8.2:24366578-24366597 MS.gene60167:intron 35.0%
ACATGCAAACTTGTACCTTT+GGG - chr8.2:24366570-24366589 None:intergenic 35.0%
ACCAAACAAGTATTTCACCT+TGG - chr8.2:24365801-24365820 None:intergenic 35.0%
ATGAAGATTAAACTTGTCCC+TGG + chr8.2:24365830-24365849 MS.gene60167:CDS 35.0%
ATTCTCGTATCATCTGTTTG+GGG + chr8.2:24365506-24365525 MS.gene60167:CDS 35.0%
CACTAACCCAAAAAATTGGT+GGG + chr8.2:24367226-24367245 MS.gene60167:CDS 35.0%
CATTATGGGAAGCTGATAAT+TGG + chr8.2:24367093-24367112 MS.gene60167:CDS 35.0%
CCTAATGACACAAGATAAGA+AGG + chr8.2:24366456-24366475 MS.gene60167:intron 35.0%
GAGAACAAAGGGTTAATCTT+TGG + chr8.2:24366093-24366112 MS.gene60167:CDS 35.0%
GATTCTCGTATCATCTGTTT+GGG + chr8.2:24365505-24365524 MS.gene60167:CDS 35.0%
TAAGTATGAAAGTCAGCAGA+AGG - chr8.2:24366125-24366144 None:intergenic 35.0%
TCCAAGGTGAAATACTTGTT+TGG + chr8.2:24365797-24365816 MS.gene60167:CDS 35.0%
TGATGTTGAAAATACTCCCA+TGG - chr8.2:24366894-24366913 None:intergenic 35.0%
! ATGGTGATGATTCCAAAGAA+TGG - chr8.2:24366150-24366169 None:intergenic 35.0%
! CATCATGGGAAGTTTTCAAA+TGG + chr8.2:24366909-24366928 MS.gene60167:intron 35.0%
! CCTTCTTATCTTGTGTCATT+AGG - chr8.2:24366459-24366478 None:intergenic 35.0%
!!! GAGTTGGATTTTGAGTTCTT+GGG + chr8.2:24366008-24366027 MS.gene60167:CDS 35.0%
!!! GGGAGTATTTTCAACATCAT+GGG + chr8.2:24366895-24366914 MS.gene60167:intron 35.0%
!!! TGAGTTGGATTTTGAGTTCT+TGG + chr8.2:24366007-24366026 MS.gene60167:CDS 35.0%
!!! TGGGAGTATTTTCAACATCA+TGG + chr8.2:24366894-24366913 MS.gene60167:intron 35.0%
ACCCAAAAAATTGGTGGGAA+AGG + chr8.2:24367231-24367250 MS.gene60167:CDS 40.0%
AGAACCTGCATGTGTATTCA+AGG - chr8.2:24366983-24367002 None:intergenic 40.0%
ATACCCAAAAATGCAAGCCA+TGG + chr8.2:24367058-24367077 MS.gene60167:CDS 40.0%
ATCAAGACTTTCATGTCACG+TGG + chr8.2:24365546-24365565 MS.gene60167:CDS 40.0%
ATCGTAAAAGATGCAAGCCA+TGG + chr8.2:24366874-24366893 MS.gene60167:intron 40.0%
ATTGAAGGATGTGCAATTCC+AGG + chr8.2:24367188-24367207 MS.gene60167:CDS 40.0%
CATGCAAACTTGTACCTTTG+GGG - chr8.2:24366569-24366588 None:intergenic 40.0%
CCACTAACCCAAAAAATTGG+TGG + chr8.2:24367225-24367244 MS.gene60167:CDS 40.0%
CCCAAAAAATTGGTGGGAAA+GGG + chr8.2:24367232-24367251 MS.gene60167:CDS 40.0%
GAAAGGGTGATAGAGAACAA+AGG + chr8.2:24366081-24366100 MS.gene60167:CDS 40.0%
GACATGCAAACTTGTACCTT+TGG - chr8.2:24366571-24366590 None:intergenic 40.0%
GGATTCTCGTATCATCTGTT+TGG + chr8.2:24365504-24365523 MS.gene60167:CDS 40.0%
TACCCAAAAATGCAAGCCAT+GGG + chr8.2:24367059-24367078 MS.gene60167:CDS 40.0%
TCGTAAAAGATGCAAGCCAT+GGG + chr8.2:24366875-24366894 MS.gene60167:intron 40.0%
! CCATTGAAGCTAGAAGGTAT+AGG + chr8.2:24367276-24367295 MS.gene60167:CDS 40.0%
! GTGCCACTAACCCAAAAAAT+TGG + chr8.2:24367222-24367241 MS.gene60167:CDS 40.0%
! TATGTTACTTACCAGAGCCT+TGG - chr8.2:24365628-24365647 None:intergenic 40.0%
! TGAAGCTAGAAGGTATAGGT+GGG + chr8.2:24367280-24367299 MS.gene60167:CDS 40.0%
! TTAGTGCCATTGAAGCTAGA+AGG + chr8.2:24367270-24367289 MS.gene60167:CDS 40.0%
! TTGAAGCTAGAAGGTATAGG+TGG + chr8.2:24367279-24367298 MS.gene60167:CDS 40.0%
!! CCTATACCTTCTAGCTTCAA+TGG - chr8.2:24367279-24367298 None:intergenic 40.0%
!! TACCTTTGGGGTACAAGTTA+AGG - chr8.2:24366557-24366576 None:intergenic 40.0%
!!! ACCCTTTCCCACCAATTTTT+TGG - chr8.2:24367236-24367255 None:intergenic 40.0%
!!! ATGGCTTGCATTTTTGGGTA+TGG - chr8.2:24367059-24367078 None:intergenic 40.0%
!!! CCACCAATTTTTTGGGTTAG+TGG - chr8.2:24367228-24367247 None:intergenic 40.0%
!!! CCCTTTCCCACCAATTTTTT+GGG - chr8.2:24367235-24367254 None:intergenic 40.0%
AGTTCTTGGGAAACCGTACT+GGG + chr8.2:24366021-24366040 MS.gene60167:CDS 45.0%
ATCCAACTTACCCTAGACCA+AGG + chr8.2:24365608-24365627 MS.gene60167:CDS 45.0%
ATGCCTGAAAGACACTCATG+TGG - chr8.2:24367365-24367384 None:intergenic 45.0%
CTGTATATGGTTGCCCAGTA+CGG - chr8.2:24366037-24366056 None:intergenic 45.0%
GATAATTGGGCAACAAGAGG+TGG + chr8.2:24367107-24367126 MS.gene60167:CDS 45.0%
GCTGATAATTGGGCAACAAG+AGG + chr8.2:24367104-24367123 MS.gene60167:CDS 45.0%
TGACAGTGTTCGTGATGAGT+TGG + chr8.2:24365992-24366011 MS.gene60167:CDS 45.0%
TGCCTGAAAGACACTCATGT+GGG - chr8.2:24367364-24367383 None:intergenic 45.0%
!! ACTCCCATGGCTTGCATTTT+TGG - chr8.2:24367065-24367084 None:intergenic 45.0%
!! CTCCCATGGCTTGCATTTTT+GGG - chr8.2:24367064-24367083 None:intergenic 45.0%
!! GTCCTTAACTTGTACCCCAA+AGG + chr8.2:24366552-24366571 MS.gene60167:intron 45.0%
!!! TAATAAAATATCATATATTT+TGG - chr8.2:24365676-24365695 None:intergenic 5.0%
ACCCCACATGAGTGTCTTTC+AGG + chr8.2:24367359-24367378 MS.gene60167:CDS 50.0%
ACTTACCAGAGCCTTGGTCT+AGG - chr8.2:24365622-24365641 None:intergenic 50.0%
AGACACTCATGTGGGGTCAT+TGG - chr8.2:24367356-24367375 None:intergenic 50.0%
CTTACCAGAGCCTTGGTCTA+GGG - chr8.2:24365621-24365640 None:intergenic 50.0%
GACACTCATGTGGGGTCATT+GGG - chr8.2:24367355-24367374 None:intergenic 50.0%
GAGTTCTTGGGAAACCGTAC+TGG + chr8.2:24366020-24366039 MS.gene60167:CDS 50.0%
GCCTGAAAGACACTCATGTG+GGG - chr8.2:24367363-24367382 None:intergenic 50.0%
! AGCCTTGGTCTAGGGTAAGT+TGG - chr8.2:24365613-24365632 None:intergenic 50.0%
! AGGTTGTGGGTTTGCTTCCA+AGG + chr8.2:24365781-24365800 MS.gene60167:intron 50.0%
! GGGTTAGTGGCACATGTAGT+TGG - chr8.2:24367215-24367234 None:intergenic 50.0%
ACGGTTCCAGCAGAATCTCC+AGG - chr8.2:24365851-24365870 None:intergenic 55.0%
CGGTTCCAGCAGAATCTCCA+GGG - chr8.2:24365850-24365869 None:intergenic 55.0%
CTTACCCTAGACCAAGGCTC+TGG + chr8.2:24365614-24365633 MS.gene60167:CDS 55.0%
CTTGTCCCTGGAGATTCTGC+TGG + chr8.2:24365842-24365861 MS.gene60167:CDS 55.0%
GTGGCACATGTAGTTGGTCC+TGG - chr8.2:24367209-24367228 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24365491 24367388 24365491 ID=MS.gene60167
chr8.2 mRNA 24365491 24367388 24365491 ID=MS.gene60167.t1;Parent=MS.gene60167
chr8.2 exon 24365491 24365635 24365491 ID=MS.gene60167.t1.exon1;Parent=MS.gene60167.t1
chr8.2 CDS 24365491 24365635 24365491 ID=cds.MS.gene60167.t1;Parent=MS.gene60167.t1
chr8.2 exon 24365783 24365883 24365783 ID=MS.gene60167.t1.exon2;Parent=MS.gene60167.t1
chr8.2 CDS 24365783 24365883 24365783 ID=cds.MS.gene60167.t1;Parent=MS.gene60167.t1
chr8.2 exon 24365978 24366174 24365978 ID=MS.gene60167.t1.exon3;Parent=MS.gene60167.t1
chr8.2 CDS 24365978 24366174 24365978 ID=cds.MS.gene60167.t1;Parent=MS.gene60167.t1
chr8.2 exon 24366998 24367388 24366998 ID=MS.gene60167.t1.exon4;Parent=MS.gene60167.t1
chr8.2 CDS 24366998 24367388 24366998 ID=cds.MS.gene60167.t1;Parent=MS.gene60167.t1
Gene Sequence

>MS.gene60167

ATGTTGTTATTGTGGATTCTCGTATCATCTGTTTGGGGAAGACCAGCAACTTTTAATCAAGACTTTCATGTCACGTGGTCTGAACCCCATATCAAGCAAATTGATCAAGGCAGAACTATCCAACTTACCCTAGACCAAGGCTCTGGTAAGTAACATATGTTATTATATACATGTCCAGATGTCCAAAATATATGATATTTTATTAAACATAAATAACAAATACTATACTAATATAATTTGGATAAGTCATGTTACCTATTTATCTATCAAAAATACTAAATTTTTTGCACAGGTTGTGGGTTTGCTTCCAAGGTGAAATACTTGTTTGGTCGTGTTAGCATGAAGATTAAACTTGTCCCTGGAGATTCTGCTGGAACCGTTACTGCATTTTATGTAAGTTCAAATTAATTTCTCCACTCTTTGTTTGAATCATAATTAAGTGAGACAAAAACTGAAATCACTGAATATATTTTTCATTTTGTGGTAGATGAACTCTGACACTGACAGTGTTCGTGATGAGTTGGATTTTGAGTTCTTGGGAAACCGTACTGGGCAACCATATACAGTTCAAACGAATATTTATGCTCATGGAAAGGGTGATAGAGAACAAAGGGTTAATCTTTGGTTTGATCCTTCTGCTGACTTTCATACTTACTCCATTCTTTGGAATCATCACCATATTGTGTAAGTAAAAATATATATAAGCATAATGATGAGATTCTGTTAATAAAAATAAATATAATTGCATAATGTAAATCACAAAGTTGCATTGAGATATTTGATATTTCAGTTGTGTTATTTGAACAATCAAATTTAGAAACTATTTTAGAGAACGTTTTAGACAATTTTTTTGTTCAAATAGATGGTTTGTTATCTTCACTATATATGGTTCAAATTATGTATTTTTTTTTTTTAAGCAAAATCACATAGTTGAACACTTAAATTATGAAAATGTTAACTTGTATCCTAATGACACAAGATAAGAAGGAAACGTAAAAGTGTAATATTGAAAATTGTGTATTTATTATTTTTTAAATGCAACATTTTTTTTTCATTTTTAAGTCCTTAACTTGTACCCCAAAGGTACAAGTTTGCATGTCCCTATTATGGTTAACCACATTTAAATTCATGGTAAATGAAGTTAAATTGATCATTAATGAGTCTCAACATCTATGATTACATAATACATGAAGTGTTGGGTTTTGAACTATGTACACCTCATATATCCACCTTAAATTATAGCTACTAAACTACCATGTAAAAGTAAATGAAATGTATAGGAGAAACATGTAACATCCAATCCAACCATCTTTAATTTCTTCACTAAATTTAGCAAATATTTTGACCTAATTAATTATAGTCACACTTTTGTCACAAAATCATATCGTAAAAGATGCAAGCCATGGGAGTATTTTCAACATCATGGGAAGTTTTCAAATGGTCATGAATGTAATTTTGATTAATCATAGCTTCTATGATTTATTTAAAACCTTGAATACACATGCAGGTTCTACGTTGATGAAGTTCCTATTAGAGTATACAAGAACAATGAAGCAAAAGGGATACCATACCCAAAAATGCAAGCCATGGGAGTATTTTCAACATTATGGGAAGCTGATAATTGGGCAACAAGAGGTGGATTAGAGAAAATTAATTGGAGTAAAGCACCTTTCTATGCTTATTACAAGGATTTTGATATTGAAGGATGTGCAATTCCAGGACCAACTACATGTGCCACTAACCCAAAAAATTGGTGGGAAAGGGTTGAATATCAAGCTCTTAGTGCCATTGAAGCTAGAAGGTATAGGTGGGTTCGTATGAACCATGTGATCTATGATTATTGTCAAGATAAATCAAGGTACCCAATGACCCCACATGAGTGTCTTTCAGGCATTTAA
Protein sequence

>MS.gene60167.t1

MLLLWILVSSVWGRPATFNQDFHVTWSEPHIKQIDQGRTIQLTLDQGSGCGFASKVKYLFGRVSMKIKLVPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRTGQPYTVQTNIYAHGKGDREQRVNLWFDPSADFHTYSILWNHHHIVFYVDEVPIRVYKNNEAKGIPYPKMQAMGVFSTLWEADNWATRGGLEKINWSKAPFYAYYKDFDIEGCAIPGPTTCATNPKNWWERVEYQALSAIEARRYRWVRMNHVIYDYCQDKSRYPMTPHECLSGI