Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059840.t1 | XP_003598026.1 | 95.4 | 197 | 9 | 0 | 1 | 197 | 1 | 197 | 1.90E-100 | 375.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059840.t1 | Q9FLF0 | 86.8 | 197 | 26 | 0 | 1 | 197 | 1 | 197 | 8.7e-94 | 344.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059840.t1 | B7FMD4 | 95.4 | 197 | 9 | 0 | 1 | 197 | 1 | 197 | 1.4e-100 | 375.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059840 | MS.gene09597 | 0.809734 | 1.63E-50 | -1.69E-46 |
| MS.gene059840 | MS.gene64754 | 0.810332 | 1.21E-50 | -1.69E-46 |
| MS.gene059840 | MS.gene71044 | 0.998215 | 5.27E-259 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049071 | MS.gene059840 | PPI |
| MS.gene05867 | MS.gene059840 | PPI |
| MS.gene66593 | MS.gene059840 | PPI |
| MS.gene059840 | MS.gene015811 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059840.t1 | MTR_4g021290 | 95.187 | 187 | 9 | 0 | 1 | 187 | 1 | 187 | 3.77e-126 | 353 |
| MS.gene059840.t1 | MTR_3g005450 | 95.187 | 187 | 9 | 0 | 1 | 187 | 1 | 187 | 3.77e-126 | 353 |
| MS.gene059840.t1 | MTR_3g005430 | 95.187 | 187 | 9 | 0 | 1 | 187 | 1 | 187 | 3.77e-126 | 353 |
| MS.gene059840.t1 | MTR_7g067490 | 94.118 | 187 | 11 | 0 | 1 | 187 | 1 | 187 | 2.04e-124 | 349 |
| MS.gene059840.t1 | MTR_1g068965 | 93.855 | 179 | 11 | 0 | 1 | 179 | 28 | 206 | 3.45e-123 | 347 |
| MS.gene059840.t1 | MTR_4g108310 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.32e-74 | 218 |
| MS.gene059840.t1 | MTR_4g108305 | 100.000 | 38 | 0 | 0 | 138 | 175 | 21 | 58 | 3.07e-22 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059840.t1 | AT5G39850 | 87.166 | 187 | 24 | 0 | 1 | 187 | 1 | 187 | 9.02e-120 | 337 |
| MS.gene059840.t1 | AT5G15200 | 83.333 | 198 | 32 | 1 | 1 | 197 | 1 | 198 | 1.80e-115 | 327 |
| MS.gene059840.t1 | AT5G15200 | 87.591 | 137 | 17 | 0 | 1 | 137 | 1 | 137 | 4.74e-84 | 246 |
Find 65 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGGTGGTGGTCTTCC+TGG | 0.197404 | 2.4:-18202458 | MS.gene059840:CDS |
| ATCACCACCAGAAGCCTTCT+TGG | 0.218725 | 2.4:+18202403 | None:intergenic |
| TTCCCATAGTTTCGGTAAAC+TGG | 0.287392 | 2.4:+18203319 | None:intergenic |
| CAGACTCTTGTCTTCAAATC+TGG | 0.288805 | 2.4:-18202998 | MS.gene059840:CDS |
| ATTCCAGTTTACCGAAACTA+TGG | 0.305962 | 2.4:-18203322 | MS.gene059840:CDS |
| TTGAAGCTGGTCGGAGAGTA+TGG | 0.314070 | 2.4:-18203244 | MS.gene059840:CDS |
| CCTTCTTGGTTGCAGCCTTA+AGG | 0.336380 | 2.4:+18202417 | None:intergenic |
| ACCATGCTAGGGTTCTTATC+AGG | 0.369101 | 2.4:-18202958 | MS.gene059840:CDS |
| GCTGCAACCAAGAAGGCTTC+TGG | 0.408125 | 2.4:-18202410 | MS.gene059840:CDS |
| TGGACGACGTGGCTTCTTGA+AGG | 0.409761 | 2.4:+18203294 | None:intergenic |
| TCTTCTCATCCAATGTCAAA+AGG | 0.432229 | 2.4:+18203152 | None:intergenic |
| TCCATACGAGAAGGAGCGTT+TGG | 0.432310 | 2.4:-18203275 | MS.gene059840:CDS |
| TCCCTCACCAGTCCCTTTGG+TGG | 0.444838 | 2.4:-18202470 | MS.gene059840:CDS |
| TTATCAGGCAGAGACACATT+AGG | 0.445935 | 2.4:-18202943 | MS.gene059840:intron |
| CCTAGCATGGTGAATGGACT+TGG | 0.448468 | 2.4:+18202970 | None:intergenic |
| CATTGTTACGGATACGGCTC+AGG | 0.451453 | 2.4:+18203182 | None:intergenic |
| TTCTTTCGCTTCACGCGACC+AGG | 0.452567 | 2.4:+18202440 | None:intergenic |
| TTCTAGCATTGTTACGGATA+CGG | 0.467109 | 2.4:+18203176 | None:intergenic |
| CTCACCAGTCCCTTTGGTGG+TGG | 0.469552 | 2.4:-18202467 | MS.gene059840:CDS |
| ACCAGGAAGACCACCACCAA+AGG | 0.473047 | 2.4:+18202457 | None:intergenic |
| AAAGGGTTCTAGCATTGTTA+CGG | 0.475438 | 2.4:+18203170 | None:intergenic |
| AGTGAACATCCCATCCTTCA+TGG | 0.476720 | 2.4:-18202525 | MS.gene059840:CDS |
| GAGCCCTCGTCGGATCTTTG+AGG | 0.482488 | 2.4:-18203131 | MS.gene059840:CDS |
| AAGAAGGCTTCTGGTGGTGA+TGG | 0.495137 | 2.4:-18202401 | MS.gene059840:CDS |
| TCCAAACGCTCCTTCTCGTA+TGG | 0.519540 | 2.4:+18203274 | None:intergenic |
| CTTCTCATCCAATGTCAAAA+GGG | 0.523313 | 2.4:+18203153 | None:intergenic |
| AGCCCTCGTCGGATCTTTGA+GGG | 0.524524 | 2.4:-18203130 | MS.gene059840:CDS |
| CCAAGTCCATTCACCATGCT+AGG | 0.525789 | 2.4:-18202970 | MS.gene059840:CDS |
| GTTTCGGTAAACTGGAATGT+GGG | 0.529716 | 2.4:+18203327 | None:intergenic |
| TCAACCCTCACCATGAAGGA+TGG | 0.531047 | 2.4:+18202515 | None:intergenic |
| AAGAACCCTAGCATGGTGAA+TGG | 0.539163 | 2.4:+18202964 | None:intergenic |
| CGTGAAGCGAAAGAACCTTA+AGG | 0.541128 | 2.4:-18202432 | MS.gene059840:CDS |
| TGGTCGGAGAGTATGGTCTT+CGG | 0.541482 | 2.4:-18203237 | MS.gene059840:CDS |
| TTCCAGTTTACCGAAACTAT+GGG | 0.556730 | 2.4:-18203321 | MS.gene059840:CDS |
| TTGAGGAGAATGTTTAAGCA+TGG | 0.560766 | 2.4:-18203097 | MS.gene059840:CDS |
| CAACCCTCACCATGAAGGAT+GGG | 0.569875 | 2.4:+18202516 | None:intergenic |
| AAGACCACCACCAAAGGGAC+TGG | 0.570564 | 2.4:+18202463 | None:intergenic |
| TGAATCAACCCTCACCATGA+AGG | 0.571223 | 2.4:+18202511 | None:intergenic |
| CCTTAAGGCTGCAACCAAGA+AGG | 0.573742 | 2.4:-18202417 | MS.gene059840:CDS |
| ACCACCAAAGGGACTGGTGA+GGG | 0.576930 | 2.4:+18202469 | None:intergenic |
| GAACAAGCTCGATTATGTGT+TGG | 0.578338 | 2.4:-18203056 | MS.gene059840:CDS |
| TTTGGATGCTGAGTTGAAGC+TGG | 0.579570 | 2.4:-18203257 | MS.gene059840:CDS |
| CCAGGAAGACCACCACCAAA+GGG | 0.581024 | 2.4:+18202458 | None:intergenic |
| GGTGTAAGAGAGAGCTGTGG+AGG | 0.589621 | 2.4:-18203216 | MS.gene059840:CDS |
| TTCTGGTGGTGATGGAGATG+AGG | 0.590267 | 2.4:-18202393 | MS.gene059840:CDS |
| AGTTTCGGTAAACTGGAATG+TGG | 0.592077 | 2.4:+18203326 | None:intergenic |
| CATCCCATCCTTCATGGTGA+GGG | 0.593258 | 2.4:-18202519 | MS.gene059840:CDS |
| TCTTGTCTTCAAATCTGGCA+TGG | 0.593384 | 2.4:-18202993 | MS.gene059840:CDS |
| ATTGTTACGGATACGGCTCA+GGG | 0.599593 | 2.4:+18203183 | None:intergenic |
| CAAGTCCATTCACCATGCTA+GGG | 0.599707 | 2.4:-18202969 | MS.gene059840:CDS |
| ACATCCCATCCTTCATGGTG+AGG | 0.616704 | 2.4:-18202520 | MS.gene059840:CDS |
| GCCACGTCGTCCATACGAGA+AGG | 0.630150 | 2.4:-18203284 | MS.gene059840:CDS |
| TGAAGACAAGAGTCTGAAGA+CGG | 0.630423 | 2.4:+18203005 | None:intergenic |
| GATGCTGAGTTGAAGCTGGT+CGG | 0.640820 | 2.4:-18203253 | MS.gene059840:CDS |
| TTTCGGTAAACTGGAATGTG+GGG | 0.641183 | 2.4:+18203328 | None:intergenic |
| GCAACCAAGAAGGCTTCTGG+TGG | 0.643072 | 2.4:-18202407 | MS.gene059840:CDS |
| GCCTGATAAGAACCCTAGCA+TGG | 0.650504 | 2.4:+18202957 | None:intergenic |
| CACCACCAAAGGGACTGGTG+AGG | 0.654247 | 2.4:+18202468 | None:intergenic |
| TGGTGGTGATGGAGATGAGG+AGG | 0.657794 | 2.4:-18202390 | MS.gene059840:CDS |
| GTGTAAGAGAGAGCTGTGGA+GGG | 0.669438 | 2.4:-18203215 | MS.gene059840:CDS |
| CACCCTCAAAGATCCGACGA+GGG | 0.691605 | 2.4:+18203128 | None:intergenic |
| TTCGGTGTAAGAGAGAGCTG+TGG | 0.694839 | 2.4:-18203219 | MS.gene059840:CDS |
| TCCTTCTCGTATGGACGACG+TGG | 0.696550 | 2.4:+18203283 | None:intergenic |
| TGGATGAGAAGAGCCCTCGT+CGG | 0.701475 | 2.4:-18203141 | MS.gene059840:CDS |
| TCACCCTCAAAGATCCGACG+AGG | 0.706908 | 2.4:+18203127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTTAATTGTAAGTT+TGG | - | chr2.4:18202809-18202828 | MS.gene059840:intron | 10.0% |
| !!! | ATATCATTTTTTGTTTTCAT+AGG | - | chr2.4:18203148-18203167 | MS.gene059840:CDS | 15.0% |
| !!! | TATCATTTTTTGTTTTCATA+GGG | - | chr2.4:18203149-18203168 | MS.gene059840:CDS | 15.0% |
| ! | ATAAAAGGCAGAAATAAACT+AGG | + | chr2.4:18203070-18203089 | None:intergenic | 25.0% |
| !! | ATGTCAATAGAACTTACTTT+TGG | - | chr2.4:18202895-18202914 | MS.gene059840:intron | 25.0% |
| !! | GTAAAGGTTTAAGCAAATTT+TGG | + | chr2.4:18203026-18203045 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTTTCATAGGGT+TGG | - | chr2.4:18203153-18203172 | MS.gene059840:CDS | 25.0% |
| !!! | GTTTATTTCTGCCTTTTATT+TGG | - | chr2.4:18203071-18203090 | MS.gene059840:CDS | 25.0% |
| !!! | TGTCAATAGAACTTACTTTT+GGG | - | chr2.4:18202896-18202915 | MS.gene059840:intron | 25.0% |
| !!! | TTTTTTGTTTTCATAGGGTT+GGG | - | chr2.4:18203154-18203173 | MS.gene059840:CDS | 25.0% |
| AAACACAAAATTGTGCAAAC+AGG | + | chr2.4:18202940-18202959 | None:intergenic | 30.0% | |
| AACACAAAATTGTGCAAACA+GGG | + | chr2.4:18202939-18202958 | None:intergenic | 30.0% | |
| AGAAAACCCAACCAAATAAA+AGG | + | chr2.4:18203085-18203104 | None:intergenic | 30.0% | |
| ! | ATCTGAGAGTTCGAATTTTT+GGG | - | chr2.4:18202853-18202872 | MS.gene059840:intron | 30.0% |
| !! | ATTTCTGCCTTTTATTTGGT+TGG | - | chr2.4:18203075-18203094 | MS.gene059840:CDS | 30.0% |
| !! | GTTTAAGCAAATTTTGGCAA+TGG | + | chr2.4:18203020-18203039 | None:intergenic | 30.0% |
| !! | TTTCTGCCTTTTATTTGGTT+GGG | - | chr2.4:18203076-18203095 | MS.gene059840:CDS | 30.0% |
| ATTCCAGTTTACCGAAACTA+TGG | - | chr2.4:18202388-18202407 | MS.gene059840:CDS | 35.0% | |
| CTTCTCATCCAATGTCAAAA+GGG | + | chr2.4:18202560-18202579 | None:intergenic | 35.0% | |
| GATCAGATAATCAACGGTAA+AGG | + | chr2.4:18203042-18203061 | None:intergenic | 35.0% | |
| TCATCGTTGTGAAACATGTT+TGG | - | chr2.4:18203113-18203132 | MS.gene059840:CDS | 35.0% | |
| TCTTCTCATCCAATGTCAAA+AGG | + | chr2.4:18202561-18202580 | None:intergenic | 35.0% | |
| TTCCAGTTTACCGAAACTAT+GGG | - | chr2.4:18202389-18202408 | MS.gene059840:CDS | 35.0% | |
| TTCTAGCATTGTTACGGATA+CGG | + | chr2.4:18202537-18202556 | None:intergenic | 35.0% | |
| TTGAGGAGAATGTTTAAGCA+TGG | - | chr2.4:18202613-18202632 | MS.gene059840:intron | 35.0% | |
| ! | AAAGGGTTCTAGCATTGTTA+CGG | + | chr2.4:18202543-18202562 | None:intergenic | 35.0% |
| ! | CATCTGAGAGTTCGAATTTT+TGG | - | chr2.4:18202852-18202871 | MS.gene059840:intron | 35.0% |
| ! | GTCTAGGATCAGATAATCAA+CGG | + | chr2.4:18203048-18203067 | None:intergenic | 35.0% |
| ! | TGAAGGTTTTCCCATAGTTT+CGG | + | chr2.4:18202402-18202421 | None:intergenic | 35.0% |
| AGTTTCGGTAAACTGGAATG+TGG | + | chr2.4:18202387-18202406 | None:intergenic | 40.0% | |
| CAGACTCTTGTCTTCAAATC+TGG | - | chr2.4:18202712-18202731 | MS.gene059840:intron | 40.0% | |
| GAACAAGCTCGATTATGTGT+TGG | - | chr2.4:18202654-18202673 | MS.gene059840:intron | 40.0% | |
| GGCAGAAATAAACTAGGTCT+AGG | + | chr2.4:18203064-18203083 | None:intergenic | 40.0% | |
| GTTTCGGTAAACTGGAATGT+GGG | + | chr2.4:18202386-18202405 | None:intergenic | 40.0% | |
| TCTTGTCTTCAAATCTGGCA+TGG | - | chr2.4:18202717-18202736 | MS.gene059840:intron | 40.0% | |
| TGAAGACAAGAGTCTGAAGA+CGG | + | chr2.4:18202708-18202727 | None:intergenic | 40.0% | |
| TTATCAGGCAGAGACACATT+AGG | - | chr2.4:18202767-18202786 | MS.gene059840:intron | 40.0% | |
| TTCCCATAGTTTCGGTAAAC+TGG | + | chr2.4:18202394-18202413 | None:intergenic | 40.0% | |
| TTTCGGTAAACTGGAATGTG+GGG | + | chr2.4:18202385-18202404 | None:intergenic | 40.0% | |
| ! | TGCTAGAACCCTTTTGACAT+TGG | - | chr2.4:18202549-18202568 | MS.gene059840:intron | 40.0% |
| !! | TTTGTTTTCATAGGGTTGGG+AGG | - | chr2.4:18203157-18203176 | MS.gene059840:CDS | 40.0% |
| AAGAACCCTAGCATGGTGAA+TGG | + | chr2.4:18202749-18202768 | None:intergenic | 45.0% | |
| ACCATGCTAGGGTTCTTATC+AGG | - | chr2.4:18202752-18202771 | MS.gene059840:intron | 45.0% | |
| AGTGAACATCCCATCCTTCA+TGG | - | chr2.4:18203185-18203204 | MS.gene059840:CDS | 45.0% | |
| ATTGTTACGGATACGGCTCA+GGG | + | chr2.4:18202530-18202549 | None:intergenic | 45.0% | |
| CAAGTCCATTCACCATGCTA+GGG | - | chr2.4:18202741-18202760 | MS.gene059840:intron | 45.0% | |
| CGTGAAGCGAAAGAACCTTA+AGG | - | chr2.4:18203278-18203297 | MS.gene059840:CDS | 45.0% | |
| TGAATCAACCCTCACCATGA+AGG | + | chr2.4:18203202-18203221 | None:intergenic | 45.0% | |
| ! | TTTGGATGCTGAGTTGAAGC+TGG | - | chr2.4:18202453-18202472 | MS.gene059840:CDS | 45.0% |
| ACATCCCATCCTTCATGGTG+AGG | - | chr2.4:18203190-18203209 | MS.gene059840:CDS | 50.0% | |
| ATCACCACCAGAAGCCTTCT+TGG | + | chr2.4:18203310-18203329 | None:intergenic | 50.0% | |
| CAACCCTCACCATGAAGGAT+GGG | + | chr2.4:18203197-18203216 | None:intergenic | 50.0% | |
| CATCCCATCCTTCATGGTGA+GGG | - | chr2.4:18203191-18203210 | MS.gene059840:CDS | 50.0% | |
| CATTGTTACGGATACGGCTC+AGG | + | chr2.4:18202531-18202550 | None:intergenic | 50.0% | |
| CCAAGTCCATTCACCATGCT+AGG | - | chr2.4:18202740-18202759 | MS.gene059840:intron | 50.0% | |
| CCTTAAGGCTGCAACCAAGA+AGG | - | chr2.4:18203293-18203312 | MS.gene059840:CDS | 50.0% | |
| CCTTCTTGGTTGCAGCCTTA+AGG | + | chr2.4:18203296-18203315 | None:intergenic | 50.0% | |
| GCCTGATAAGAACCCTAGCA+TGG | + | chr2.4:18202756-18202775 | None:intergenic | 50.0% | |
| GTGTAAGAGAGAGCTGTGGA+GGG | - | chr2.4:18202495-18202514 | MS.gene059840:CDS | 50.0% | |
| TCAACCCTCACCATGAAGGA+TGG | + | chr2.4:18203198-18203217 | None:intergenic | 50.0% | |
| TCCAAACGCTCCTTCTCGTA+TGG | + | chr2.4:18202439-18202458 | None:intergenic | 50.0% | |
| TTGAAGCTGGTCGGAGAGTA+TGG | - | chr2.4:18202466-18202485 | MS.gene059840:CDS | 50.0% | |
| ! | AAGAAGGCTTCTGGTGGTGA+TGG | - | chr2.4:18203309-18203328 | MS.gene059840:CDS | 50.0% |
| ! | CCTAGCATGGTGAATGGACT+TGG | + | chr2.4:18202743-18202762 | None:intergenic | 50.0% |
| ! | GATGCTGAGTTGAAGCTGGT+CGG | - | chr2.4:18202457-18202476 | MS.gene059840:CDS | 50.0% |
| ! | TGGTCGGAGAGTATGGTCTT+CGG | - | chr2.4:18202473-18202492 | MS.gene059840:CDS | 50.0% |
| ! | TTCGGTGTAAGAGAGAGCTG+TGG | - | chr2.4:18202491-18202510 | MS.gene059840:CDS | 50.0% |
| ! | TTGAGGGTGACGCACTTTTG+AGG | - | chr2.4:18202596-18202615 | MS.gene059840:intron | 50.0% |
| ! | TTTTCATAGGGTTGGGAGGC+AGG | - | chr2.4:18203161-18203180 | MS.gene059840:CDS | 50.0% |
| ! | TTTTCCCTCACCAGTCCCTT+TGG | - | chr2.4:18203237-18203256 | MS.gene059840:CDS | 50.0% |
| !! | TCCATACGAGAAGGAGCGTT+TGG | - | chr2.4:18202435-18202454 | MS.gene059840:CDS | 50.0% |
| !! | TTCTGGTGGTGATGGAGATG+AGG | - | chr2.4:18203317-18203336 | MS.gene059840:CDS | 50.0% |
| AAGACCACCACCAAAGGGAC+TGG | + | chr2.4:18203250-18203269 | None:intergenic | 55.0% | |
| ACCAGGAAGACCACCACCAA+AGG | + | chr2.4:18203256-18203275 | None:intergenic | 55.0% | |
| AGCCCTCGTCGGATCTTTGA+GGG | - | chr2.4:18202580-18202599 | MS.gene059840:intron | 55.0% | |
| CACCCTCAAAGATCCGACGA+GGG | + | chr2.4:18202585-18202604 | None:intergenic | 55.0% | |
| CCAGGAAGACCACCACCAAA+GGG | + | chr2.4:18203255-18203274 | None:intergenic | 55.0% | |
| GCAACCAAGAAGGCTTCTGG+TGG | - | chr2.4:18203303-18203322 | MS.gene059840:CDS | 55.0% | |
| GCTGCAACCAAGAAGGCTTC+TGG | - | chr2.4:18203300-18203319 | MS.gene059840:CDS | 55.0% | |
| GGTGTAAGAGAGAGCTGTGG+AGG | - | chr2.4:18202494-18202513 | MS.gene059840:CDS | 55.0% | |
| TCACCCTCAAAGATCCGACG+AGG | + | chr2.4:18202586-18202605 | None:intergenic | 55.0% | |
| TCCTTCTCGTATGGACGACG+TGG | + | chr2.4:18202430-18202449 | None:intergenic | 55.0% | |
| TGGACGACGTGGCTTCTTGA+AGG | + | chr2.4:18202419-18202438 | None:intergenic | 55.0% | |
| TGGATGAGAAGAGCCCTCGT+CGG | - | chr2.4:18202569-18202588 | MS.gene059840:intron | 55.0% | |
| TTCTTTCGCTTCACGCGACC+AGG | + | chr2.4:18203273-18203292 | None:intergenic | 55.0% | |
| ! | ACCACCAAAGGGACTGGTGA+GGG | + | chr2.4:18203244-18203263 | None:intergenic | 55.0% |
| !! | TGGTGGTGATGGAGATGAGG+AGG | - | chr2.4:18203320-18203339 | MS.gene059840:CDS | 55.0% |
| CTCACCAGTCCCTTTGGTGG+TGG | - | chr2.4:18203243-18203262 | MS.gene059840:CDS | 60.0% | |
| GAGCCCTCGTCGGATCTTTG+AGG | - | chr2.4:18202579-18202598 | MS.gene059840:intron | 60.0% | |
| GCCACGTCGTCCATACGAGA+AGG | - | chr2.4:18202426-18202445 | MS.gene059840:CDS | 60.0% | |
| TCCCTCACCAGTCCCTTTGG+TGG | - | chr2.4:18203240-18203259 | MS.gene059840:CDS | 60.0% | |
| ! | CACCACCAAAGGGACTGGTG+AGG | + | chr2.4:18203245-18203264 | None:intergenic | 60.0% |
| !! | CCCTTTGGTGGTGGTCTTCC+TGG | - | chr2.4:18203252-18203271 | MS.gene059840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 18202379 | 18203353 | 18202379 | ID=MS.gene059840 |
| chr2.4 | mRNA | 18202379 | 18203353 | 18202379 | ID=MS.gene059840.t1;Parent=MS.gene059840 |
| chr2.4 | exon | 18202944 | 18203353 | 18202944 | ID=MS.gene059840.t1.exon1;Parent=MS.gene059840.t1 |
| chr2.4 | CDS | 18202944 | 18203353 | 18202944 | ID=cds.MS.gene059840.t1;Parent=MS.gene059840.t1 |
| chr2.4 | exon | 18202379 | 18202562 | 18202379 | ID=MS.gene059840.t1.exon2;Parent=MS.gene059840.t1 |
| chr2.4 | CDS | 18202379 | 18202562 | 18202379 | ID=cds.MS.gene059840.t1;Parent=MS.gene059840.t1 |
| Gene Sequence |
| Protein sequence |