Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049071.t1 | XP_003630714.1 | 99.5 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 6.90E-97 | 363.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049071.t1 | P32899 | 56.1 | 180 | 78 | 1 | 1 | 179 | 2 | 181 | 2.8e-54 | 213.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049071.t1 | B7FMK3 | 99.5 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 5.0e-97 | 363.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049071.t1 | MTR_8g102530 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 2.99e-135 | 375 |
| MS.gene049071.t1 | MTR_8g102530 | 95.055 | 182 | 0 | 1 | 1 | 182 | 1 | 173 | 1.70e-125 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049071.t1 | AT5G15750 | 80.110 | 181 | 36 | 0 | 1 | 181 | 1 | 181 | 2.02e-110 | 313 |
Find 36 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGTCTGTAATTGTATT+TGG | 0.229997 | 4.1:+3178151 | None:intergenic |
| TGATATGACTGATAAGCTTT+TGG | 0.287922 | 4.1:-3179943 | MS.gene049071:CDS |
| AAGCACCTTTCTCTTTATCT+TGG | 0.381545 | 4.1:+3178078 | None:intergenic |
| ACGTAGGCTCTCAACTGTTT+TGG | 0.388493 | 4.1:-3178245 | MS.gene049071:CDS |
| CTTCCATGTTTCTAGTTACA+AGG | 0.421817 | 4.1:+3178125 | None:intergenic |
| TTTCATGACAGTTACAATAT+GGG | 0.424343 | 4.1:-3179328 | MS.gene049071:intron |
| ATCAACTCGAAAAGGATCCT+TGG | 0.424814 | 4.1:+3179962 | None:intergenic |
| TTTCTAGTTACAAGGTAAGC+TGG | 0.444914 | 4.1:+3178133 | None:intergenic |
| ACATAGTGTGATGCTTTGCC+TGG | 0.454332 | 4.1:+3179294 | None:intergenic |
| ATGCCGGATGGTTCAAAAGT+TGG | 0.484865 | 4.1:-3180009 | MS.gene049071:CDS |
| TCAACTCGAAAAGGATCCTT+GGG | 0.487619 | 4.1:+3179963 | None:intergenic |
| TAACCGTGTCAGCCTTCTGC+AGG | 0.495522 | 4.1:-3179264 | MS.gene049071:intron |
| AATCGTCCCGTCCGGTAACA+TGG | 0.517679 | 4.1:+3180172 | None:intergenic |
| ACATGGAAGACTTGATTACA+TGG | 0.518432 | 4.1:-3178111 | MS.gene049071:CDS |
| ATGCAGCGCTACCATGTTAC+CGG | 0.520504 | 4.1:-3180183 | MS.gene049071:CDS |
| TCAGTCATATCAACTCGAAA+AGG | 0.520506 | 4.1:+3179954 | None:intergenic |
| TTCTAGTTACAAGGTAAGCT+GGG | 0.525625 | 4.1:+3178134 | None:intergenic |
| AGTGTGATGCTTTGCCTGGT+TGG | 0.526362 | 4.1:+3179298 | None:intergenic |
| TTCTTCCAAGATAAAGAGAA+AGG | 0.564085 | 4.1:-3178083 | MS.gene049071:CDS |
| TTGGAATGGAAGAGAGAAGG+GGG | 0.573733 | 4.1:-3180225 | MS.gene049071:CDS |
| GGAAGACTTGATTACATGGG+TGG | 0.589794 | 4.1:-3178107 | MS.gene049071:CDS |
| AGCTAAAGCATCATGAGCAA+AGG | 0.591441 | 4.1:-3180269 | MS.gene049071:CDS |
| GCGCTACCATGTTACCGGAC+GGG | 0.593016 | 4.1:-3180178 | MS.gene049071:CDS |
| TTACCTGCAGAAGGCTGACA+CGG | 0.596614 | 4.1:+3179261 | None:intergenic |
| GAACAAGGACATGTTCGAGT+TGG | 0.597698 | 4.1:-3178175 | MS.gene049071:CDS |
| GGTAAACACTGTGAAACAGA+TGG | 0.604130 | 4.1:-3179988 | MS.gene049071:CDS |
| GCTTCAGTACAATGACAAGT+TGG | 0.608210 | 4.1:-3178059 | MS.gene049071:CDS |
| ATAGGTATTCGAGTATATGC+CGG | 0.611429 | 4.1:-3180025 | MS.gene049071:intron |
| TGTGAAACAGATGGATCCCA+AGG | 0.635519 | 4.1:-3179979 | MS.gene049071:CDS |
| TTTGGAATGGAAGAGAGAAG+GGG | 0.646764 | 4.1:-3180226 | MS.gene049071:CDS |
| TTACCTTGTAACTAGAAACA+TGG | 0.656200 | 4.1:-3178128 | MS.gene049071:CDS |
| AGCGCTACCATGTTACCGGA+CGG | 0.657895 | 4.1:-3180179 | MS.gene049071:CDS |
| ATATGGGTGTGATTCCAACC+AGG | 0.661105 | 4.1:-3179312 | MS.gene049071:CDS |
| GCTGTAACTTATATTGAACA+AGG | 0.683794 | 4.1:-3178190 | MS.gene049071:CDS |
| GTATTCGAGTATATGCCGGA+TGG | 0.685170 | 4.1:-3180021 | MS.gene049071:CDS |
| CATGGAAGACTTGATTACAT+GGG | 0.687449 | 4.1:-3178110 | MS.gene049071:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTTGTTTCATAATTA+TGG | - | chr4.1:3178450-3178469 | MS.gene049071:intron | 10.0% |
| !!! | TATTTTTCTTTTTTTTAGTT+TGG | - | chr4.1:3178212-3178231 | MS.gene049071:CDS | 10.0% |
| !! | AAATTTAATGCATGAAAAAT+AGG | - | chr4.1:3179754-3179773 | MS.gene049071:intron | 15.0% |
| !! | TAAGTTATATAACAAAACTA+TGG | + | chr4.1:3178770-3178789 | None:intergenic | 15.0% |
| !! | GTTTATTCAATCACATAAAA+TGG | + | chr4.1:3179733-3179752 | None:intergenic | 20.0% |
| !! | TAAATTATATACAAGTTGCA+GGG | - | chr4.1:3178657-3178676 | MS.gene049071:intron | 20.0% |
| !! | TACTAAATATTTCGATAGAT+AGG | + | chr4.1:3179321-3179340 | None:intergenic | 20.0% |
| !! | TGATTGAATTACTATGTAAA+TGG | - | chr4.1:3179294-3179313 | MS.gene049071:CDS | 20.0% |
| !! | TTACATATTTATGTCATGAA+TGG | + | chr4.1:3178695-3178714 | None:intergenic | 20.0% |
| !!! | TGAAGAATTTTATTTTTCAG+TGG | + | chr4.1:3179784-3179803 | None:intergenic | 20.0% |
| ! | CTAATGTTAGATGTTTACTT+CGG | - | chr4.1:3179534-3179553 | MS.gene049071:intron | 25.0% |
| ! | GTAAATTATATACAAGTTGC+AGG | - | chr4.1:3178656-3178675 | MS.gene049071:intron | 25.0% |
| ! | TAATGAGCAAACAAATAAAG+TGG | + | chr4.1:3179124-3179143 | None:intergenic | 25.0% |
| ! | TCATTAGAATGTATGTTCAT+AGG | - | chr4.1:3179138-3179157 | MS.gene049071:intron | 25.0% |
| ! | TTAGTATGTCAAAAGAAAGA+TGG | + | chr4.1:3178508-3178527 | None:intergenic | 25.0% |
| ! | TTTCAAAATTCAAAGCCATT+TGG | + | chr4.1:3179261-3179280 | None:intergenic | 25.0% |
| ! | TTTCATGACAGTTACAATAT+GGG | - | chr4.1:3178984-3179003 | MS.gene049071:intron | 25.0% |
| !! | AATAGAAGCACAAATAGATT+TGG | + | chr4.1:3178560-3178579 | None:intergenic | 25.0% |
| !! | ATAGAAGCACAAATAGATTT+GGG | + | chr4.1:3178559-3178578 | None:intergenic | 25.0% |
| !! | ATTCATTTTCTTTGTGGAAT+TGG | - | chr4.1:3178245-3178264 | MS.gene049071:CDS | 25.0% |
| !! | TCTTATTTAACTAAGAAGCT+TGG | - | chr4.1:3179231-3179250 | MS.gene049071:intron | 25.0% |
| !! | TTCATTTTCTTTGTGGAATT+GGG | - | chr4.1:3178246-3178265 | MS.gene049071:CDS | 25.0% |
| !! | TTTTATGTTGTTCTTGCATT+TGG | - | chr4.1:3178189-3178208 | MS.gene049071:CDS | 25.0% |
| !! | TTTTCATGACAGTTACAATA+TGG | - | chr4.1:3178983-3179002 | MS.gene049071:intron | 25.0% |
| !!! | AACAATCATCCTTTTTGAAA+TGG | + | chr4.1:3178834-3178853 | None:intergenic | 25.0% |
| !!! | AGTTAATCAAGTTGAAACAT+TGG | - | chr4.1:3179917-3179936 | MS.gene049071:intron | 25.0% |
| !!! | GCTAAGTTATCTAGTTTTAA+GGG | - | chr4.1:3179592-3179611 | MS.gene049071:intron | 25.0% |
| !!! | TGCTAAGTTATCTAGTTTTA+AGG | - | chr4.1:3179591-3179610 | MS.gene049071:intron | 25.0% |
| !!! | TTTGAGAAAGGTGAATTTTT+TGG | - | chr4.1:3178068-3178087 | MS.gene049071:CDS | 25.0% |
| AAAACTAACAAGACGAGATT+AGG | + | chr4.1:3179958-3179977 | None:intergenic | 30.0% | |
| AAACTAACAAGACGAGATTA+GGG | + | chr4.1:3179957-3179976 | None:intergenic | 30.0% | |
| AGTGTCTATAGTTATGGATT+TGG | - | chr4.1:3179406-3179425 | MS.gene049071:intron | 30.0% | |
| GCTGTAACTTATATTGAACA+AGG | - | chr4.1:3180122-3180141 | MS.gene049071:intron | 30.0% | |
| GTAAACATCTAACATTAGCA+TGG | + | chr4.1:3179532-3179551 | None:intergenic | 30.0% | |
| GTGGTATATATATTGTAGCA+AGG | - | chr4.1:3179698-3179717 | MS.gene049071:intron | 30.0% | |
| GTGTCTATAGTTATGGATTT+GGG | - | chr4.1:3179407-3179426 | MS.gene049071:intron | 30.0% | |
| TATAACTTACAAGTCTGTCT+AGG | - | chr4.1:3178781-3178800 | MS.gene049071:intron | 30.0% | |
| TGATTTGAACTGAATTGTTG+TGG | - | chr4.1:3178584-3178603 | MS.gene049071:intron | 30.0% | |
| TTACCTTGTAACTAGAAACA+TGG | - | chr4.1:3180184-3180203 | MS.gene049071:CDS | 30.0% | |
| TTACCTTTCTTCTAATGTGA+CGG | - | chr4.1:3179851-3179870 | MS.gene049071:intron | 30.0% | |
| TTCTTCCAAGATAAAGAGAA+AGG | - | chr4.1:3180229-3180248 | MS.gene049071:CDS | 30.0% | |
| ! | ATTGTGGTGGAAATATGAAT+AGG | - | chr4.1:3178269-3178288 | MS.gene049071:intron | 30.0% |
| ! | GAGGTATTAATGAACATTTC+AGG | - | chr4.1:3179431-3179450 | MS.gene049071:intron | 30.0% |
| ! | TAGAAGCACAAATAGATTTG+GGG | + | chr4.1:3178558-3178577 | None:intergenic | 30.0% |
| ! | TGATATGACTGATAAGCTTT+TGG | - | chr4.1:3178369-3178388 | MS.gene049071:intron | 30.0% |
| ! | TTTATCATCGTTTTGTAGCT+AGG | - | chr4.1:3179646-3179665 | MS.gene049071:intron | 30.0% |
| !! | CAAGAAAGTGTCTATAGTTA+TGG | - | chr4.1:3179400-3179419 | MS.gene049071:intron | 30.0% |
| !! | TAGCTGATTCATTTTCTTTG+TGG | - | chr4.1:3178239-3178258 | MS.gene049071:CDS | 30.0% |
| !! | TCAAGTTGAAACATTGGTTA+TGG | - | chr4.1:3179923-3179942 | MS.gene049071:intron | 30.0% |
| !!! | GAAAGGTGAATTTTTTGGAA+TGG | - | chr4.1:3178073-3178092 | MS.gene049071:CDS | 30.0% |
| AACAAAGTTCGGAGCAAATT+AGG | + | chr4.1:3180034-3180053 | None:intergenic | 35.0% | |
| AACGATGATAAACCATATGC+TGG | + | chr4.1:3179638-3179657 | None:intergenic | 35.0% | |
| AACTAACAAGACGAGATTAG+GGG | + | chr4.1:3179956-3179975 | None:intergenic | 35.0% | |
| AAGCACCTTTCTCTTTATCT+TGG | + | chr4.1:3180237-3180256 | None:intergenic | 35.0% | |
| AAGTCAAAGTCTAGGAACAT+TGG | - | chr4.1:3179485-3179504 | MS.gene049071:intron | 35.0% | |
| ACATGGAAGACTTGATTACA+TGG | - | chr4.1:3180201-3180220 | MS.gene049071:CDS | 35.0% | |
| AGAAACAGAAGTCAAAGTCT+AGG | - | chr4.1:3179477-3179496 | MS.gene049071:intron | 35.0% | |
| AGAAGAAGCAAAAAGAAAGC+AGG | + | chr4.1:3178878-3178897 | None:intergenic | 35.0% | |
| AGTCAAAGTCTAGGAACATT+GGG | - | chr4.1:3179486-3179505 | MS.gene049071:intron | 35.0% | |
| ATAGGTATTCGAGTATATGC+CGG | - | chr4.1:3178287-3178306 | MS.gene049071:intron | 35.0% | |
| ATATATTGTAGCAAGGCCAA+GGG | - | chr4.1:3179705-3179724 | MS.gene049071:intron | 35.0% | |
| ATCTAACATTAGCATGGACA+CGG | + | chr4.1:3179526-3179545 | None:intergenic | 35.0% | |
| ATTATATACAAGTTGCAGGG+TGG | - | chr4.1:3178660-3178679 | MS.gene049071:intron | 35.0% | |
| CATGGAAGACTTGATTACAT+GGG | - | chr4.1:3180202-3180221 | MS.gene049071:CDS | 35.0% | |
| TATAGTTATGGATTTGGGTG+AGG | - | chr4.1:3179412-3179431 | MS.gene049071:intron | 35.0% | |
| TATATATTGTAGCAAGGCCA+AGG | - | chr4.1:3179704-3179723 | MS.gene049071:intron | 35.0% | |
| TCAGTCATATCAACTCGAAA+AGG | + | chr4.1:3178361-3178380 | None:intergenic | 35.0% | |
| ! | GCATGATAGTGAACAAAGTT+CGG | + | chr4.1:3180045-3180064 | None:intergenic | 35.0% |
| ! | GCTTTCTTTTTGCTTCTTCT+TGG | - | chr4.1:3178878-3178897 | MS.gene049071:intron | 35.0% |
| ! | GGATACGACACTATGATTTT+TGG | - | chr4.1:3178605-3178624 | MS.gene049071:intron | 35.0% |
| ! | TTACCAACTTTTGAACCATC+CGG | + | chr4.1:3178309-3178328 | None:intergenic | 35.0% |
| ! | TTAGACCTGCCATTTCAAAA+AGG | - | chr4.1:3178822-3178841 | MS.gene049071:intron | 35.0% |
| ! | TTCTAGTTACAAGGTAAGCT+GGG | + | chr4.1:3180181-3180200 | None:intergenic | 35.0% |
| !! | ATACCACTTTTCATACGACT+CGG | + | chr4.1:3179685-3179704 | None:intergenic | 35.0% |
| !! | CTTCCATGTTTCTAGTTACA+AGG | + | chr4.1:3180190-3180209 | None:intergenic | 35.0% |
| !! | TTCTGTTTCTAGACTGTTCA+TGG | + | chr4.1:3179467-3179486 | None:intergenic | 35.0% |
| !! | TTTCTAGTTACAAGGTAAGC+TGG | + | chr4.1:3180182-3180201 | None:intergenic | 35.0% |
| !! | TTTTTAGCCCAAAACTTAGC+TGG | + | chr4.1:3179877-3179896 | None:intergenic | 35.0% |
| !!! | ATCATCCTTTTTGAAATGGC+AGG | + | chr4.1:3178830-3178849 | None:intergenic | 35.0% |
| !!! | CGGTTGTTTTAATACAGTTG+AGG | - | chr4.1:3179554-3179573 | MS.gene049071:intron | 35.0% |
| !!! | GCTAAGTTTTGGGCTAAAAA+TGG | - | chr4.1:3179877-3179896 | MS.gene049071:intron | 35.0% |
| !!! | TTTTGGAATGGAAGAGAGAA+GGG | - | chr4.1:3178085-3178104 | MS.gene049071:CDS | 35.0% |
| !!! | TTTTTGGAATGGAAGAGAGA+AGG | - | chr4.1:3178084-3178103 | MS.gene049071:CDS | 35.0% |
| AAGAAGCTTGGACTTCCAAA+TGG | - | chr4.1:3179243-3179262 | MS.gene049071:intron | 40.0% | |
| AATAGTTGAACTGACTGCGA+TGG | - | chr4.1:3178719-3178738 | MS.gene049071:intron | 40.0% | |
| AGACTGTTCATGGACTTTGA+AGG | + | chr4.1:3179457-3179476 | None:intergenic | 40.0% | |
| ATCAACTCGAAAAGGATCCT+TGG | + | chr4.1:3178353-3178372 | None:intergenic | 40.0% | |
| ATCACATAAAATGGCACCCT+TGG | + | chr4.1:3179724-3179743 | None:intergenic | 40.0% | |
| CAAATAGATTTGGGGAGTCA+TGG | + | chr4.1:3178550-3178569 | None:intergenic | 40.0% | |
| CAACTTTACCAACATGTGGT+TGG | - | chr4.1:3179180-3179199 | MS.gene049071:intron | 40.0% | |
| GACGATGTAATGCAAAGTTG+TGG | + | chr4.1:3180012-3180031 | None:intergenic | 40.0% | |
| GCTGGGTCTGTAATTGTATT+TGG | + | chr4.1:3180164-3180183 | None:intergenic | 40.0% | |
| GCTTCAACTTTACCAACATG+TGG | - | chr4.1:3179176-3179195 | MS.gene049071:intron | 40.0% | |
| GCTTCAGTACAATGACAAGT+TGG | - | chr4.1:3180253-3180272 | MS.gene049071:CDS | 40.0% | |
| GGTAAACACTGTGAAACAGA+TGG | - | chr4.1:3178324-3178343 | MS.gene049071:intron | 40.0% | |
| GTATTCAAACAAGTGAAGCC+TGG | - | chr4.1:3179338-3179357 | MS.gene049071:intron | 40.0% | |
| TCAACTCGAAAAGGATCCTT+GGG | + | chr4.1:3178352-3178371 | None:intergenic | 40.0% | |
| TCTTTGTGGAATTGGGATTG+TGG | - | chr4.1:3178253-3178272 | MS.gene049071:intron | 40.0% | |
| ! | AGCTAAAGCATCATGAGCAA+AGG | - | chr4.1:3178043-3178062 | MS.gene049071:CDS | 40.0% |
| ! | GAAGCCTGGCTAGTTAAATA+AGG | - | chr4.1:3179352-3179371 | MS.gene049071:intron | 40.0% |
| ! | GGGCAAATTTTGTCACATGA+AGG | - | chr4.1:3179612-3179631 | MS.gene049071:intron | 40.0% |
| ! | TTTGGAATGGAAGAGAGAAG+GGG | - | chr4.1:3178086-3178105 | MS.gene049071:CDS | 40.0% |
| !! | CTTGCCTTATTTAACTAGCC+AGG | + | chr4.1:3179359-3179378 | None:intergenic | 40.0% |
| !! | TGAGCAAAGGCTTTTGAGAA+AGG | - | chr4.1:3178056-3178075 | MS.gene049071:CDS | 40.0% |
| AACTGACTGCGATGGTTCTT+CGG | - | chr4.1:3178727-3178746 | MS.gene049071:intron | 45.0% | |
| ACATAGTGTGATGCTTTGCC+TGG | + | chr4.1:3179021-3179040 | None:intergenic | 45.0% | |
| ATATGGGTGTGATTCCAACC+AGG | - | chr4.1:3179000-3179019 | MS.gene049071:intron | 45.0% | |
| ATGCCGGATGGTTCAAAAGT+TGG | - | chr4.1:3178303-3178322 | MS.gene049071:intron | 45.0% | |
| CTTCCGAGTCGTATGAAAAG+TGG | - | chr4.1:3179679-3179698 | MS.gene049071:intron | 45.0% | |
| GAACAAGGACATGTTCGAGT+TGG | - | chr4.1:3180137-3180156 | MS.gene049071:intron | 45.0% | |
| GGAAGACTTGATTACATGGG+TGG | - | chr4.1:3180205-3180224 | MS.gene049071:CDS | 45.0% | |
| GTATTCGAGTATATGCCGGA+TGG | - | chr4.1:3178291-3178310 | MS.gene049071:intron | 45.0% | |
| GTTCACTATCATGCAGACGT+AGG | - | chr4.1:3180051-3180070 | MS.gene049071:intron | 45.0% | |
| TGGCCGTCACATTAGAAGAA+AGG | + | chr4.1:3179857-3179876 | None:intergenic | 45.0% | |
| TGTCTGAGTGCTAAGAAGCT+TGG | - | chr4.1:3179205-3179224 | MS.gene049071:intron | 45.0% | |
| TGTGAAACAGATGGATCCCA+AGG | - | chr4.1:3178333-3178352 | MS.gene049071:intron | 45.0% | |
| TTGGAATGGAAGAGAGAAGG+GGG | - | chr4.1:3178087-3178106 | MS.gene049071:CDS | 45.0% | |
| TTGTGGAATTGGGATTGTGG+TGG | - | chr4.1:3178256-3178275 | MS.gene049071:intron | 45.0% | |
| ! | ACGTAGGCTCTCAACTGTTT+TGG | - | chr4.1:3180067-3180086 | MS.gene049071:intron | 45.0% |
| ! | CTTTTTGTAATCGTCCCGTC+CGG | + | chr4.1:3178151-3178170 | None:intergenic | 45.0% |
| ! | GTGTTCCTTTTACCTGCAGA+AGG | + | chr4.1:3179063-3179082 | None:intergenic | 45.0% |
| AGTGTGATGCTTTGCCTGGT+TGG | + | chr4.1:3179017-3179036 | None:intergenic | 50.0% | |
| ATGCAGCGCTACCATGTTAC+CGG | - | chr4.1:3178129-3178148 | MS.gene049071:CDS | 50.0% | |
| CAGACAGACCAACCACATGT+TGG | + | chr4.1:3179191-3179210 | None:intergenic | 50.0% | |
| GTCACATGAAGGCCAGCATA+TGG | - | chr4.1:3179623-3179642 | MS.gene049071:intron | 50.0% | |
| GTCAGCCTTCTGCAGGTAAA+AGG | - | chr4.1:3179055-3179074 | MS.gene049071:intron | 50.0% | |
| TTACCTGCAGAAGGCTGACA+CGG | + | chr4.1:3179054-3179073 | None:intergenic | 50.0% | |
| ! | GTGACGGCCAGCTAAGTTTT+GGG | - | chr4.1:3179867-3179886 | MS.gene049071:intron | 50.0% |
| ! | TGTGACGGCCAGCTAAGTTT+TGG | - | chr4.1:3179866-3179885 | MS.gene049071:intron | 50.0% |
| AATCGTCCCGTCCGGTAACA+TGG | + | chr4.1:3178143-3178162 | None:intergenic | 55.0% | |
| AGCGCTACCATGTTACCGGA+CGG | - | chr4.1:3178133-3178152 | MS.gene049071:CDS | 55.0% | |
| AGGGGGTCACAGAGAGAACA+TGG | - | chr4.1:3178104-3178123 | MS.gene049071:CDS | 55.0% | |
| TAACCGTGTCAGCCTTCTGC+AGG | - | chr4.1:3179048-3179067 | MS.gene049071:intron | 55.0% | |
| GCGCTACCATGTTACCGGAC+GGG | - | chr4.1:3178134-3178153 | MS.gene049071:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 3178036 | 3180298 | 3178036 | ID=MS.gene049071 |
| chr4.1 | mRNA | 3178036 | 3180298 | 3178036 | ID=MS.gene049071.t1;Parent=MS.gene049071 |
| chr4.1 | exon | 3180165 | 3180298 | 3180165 | ID=MS.gene049071.t1.exon1;Parent=MS.gene049071.t1 |
| chr4.1 | CDS | 3180165 | 3180298 | 3180165 | ID=cds.MS.gene049071.t1;Parent=MS.gene049071.t1 |
| chr4.1 | exon | 3179936 | 3180043 | 3179936 | ID=MS.gene049071.t1.exon2;Parent=MS.gene049071.t1 |
| chr4.1 | CDS | 3179936 | 3180043 | 3179936 | ID=cds.MS.gene049071.t1;Parent=MS.gene049071.t1 |
| chr4.1 | exon | 3179265 | 3179339 | 3179265 | ID=MS.gene049071.t1.exon3;Parent=MS.gene049071.t1 |
| chr4.1 | CDS | 3179265 | 3179339 | 3179265 | ID=cds.MS.gene049071.t1;Parent=MS.gene049071.t1 |
| chr4.1 | exon | 3178036 | 3178267 | 3178036 | ID=MS.gene049071.t1.exon4;Parent=MS.gene049071.t1 |
| chr4.1 | CDS | 3178036 | 3178267 | 3178036 | ID=cds.MS.gene049071.t1;Parent=MS.gene049071.t1 |
| Gene Sequence |
| Protein sequence |
