Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015811.t1 | XP_003630714.1 | 99.5 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 6.90E-97 | 363.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015811.t1 | P32899 | 56.1 | 180 | 78 | 1 | 1 | 179 | 2 | 181 | 2.8e-54 | 213.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015811.t1 | B7FMK3 | 99.5 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 5.0e-97 | 363.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015811.t1 | MTR_8g102530 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 2.99e-135 | 375 |
MS.gene015811.t1 | MTR_8g102530 | 95.055 | 182 | 0 | 1 | 1 | 182 | 1 | 173 | 1.70e-125 | 350 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015811.t1 | AT5G15750 | 80.110 | 181 | 36 | 0 | 1 | 181 | 1 | 181 | 2.02e-110 | 313 |
Find 36 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGGGTCTGTAATTGTATT+TGG | 0.229997 | 4.3:+2828779 | None:intergenic |
TGATATGACTGATAAGCTTT+TGG | 0.287922 | 4.3:-2830571 | MS.gene015811:CDS |
AAGCACCTTTCTCTTTATCT+TGG | 0.381545 | 4.3:+2828706 | None:intergenic |
ACGTAGGCTCTCAACTGTTT+TGG | 0.388493 | 4.3:-2828873 | MS.gene015811:CDS |
CTTCCATGTTTCTAGTTACA+AGG | 0.421817 | 4.3:+2828753 | None:intergenic |
TTTCATGACAGTTACAATAT+GGG | 0.424343 | 4.3:-2829956 | MS.gene015811:intron |
ATCAACTCGAAAAGGATCCT+TGG | 0.424814 | 4.3:+2830590 | None:intergenic |
TTTCTAGTTACAAGGTAAGC+TGG | 0.444914 | 4.3:+2828761 | None:intergenic |
ACATAGTGTGATGCTTTGCC+TGG | 0.454332 | 4.3:+2829922 | None:intergenic |
ATGCCGGATGGTTCAAAAGT+TGG | 0.484865 | 4.3:-2830637 | MS.gene015811:CDS |
TCAACTCGAAAAGGATCCTT+GGG | 0.487619 | 4.3:+2830591 | None:intergenic |
TAACCGTGTCAGCCTTCTGC+AGG | 0.495522 | 4.3:-2829892 | MS.gene015811:intron |
AATCGTCCCGTCCGGTAACA+TGG | 0.517679 | 4.3:+2830800 | None:intergenic |
ACATGGAAGACTTGATTACA+TGG | 0.518432 | 4.3:-2828739 | MS.gene015811:CDS |
ATGCAGCGCTACCATGTTAC+CGG | 0.520504 | 4.3:-2830811 | MS.gene015811:CDS |
TCAGTCATATCAACTCGAAA+AGG | 0.520506 | 4.3:+2830582 | None:intergenic |
TTCTAGTTACAAGGTAAGCT+GGG | 0.525625 | 4.3:+2828762 | None:intergenic |
AGTGTGATGCTTTGCCTGGT+TGG | 0.526362 | 4.3:+2829926 | None:intergenic |
TTCTTCCAAGATAAAGAGAA+AGG | 0.564085 | 4.3:-2828711 | MS.gene015811:CDS |
TTGGAATGGAAGAGAGAAGG+GGG | 0.573733 | 4.3:-2830853 | MS.gene015811:CDS |
GGAAGACTTGATTACATGGG+TGG | 0.589794 | 4.3:-2828735 | MS.gene015811:CDS |
AGCTAAAGCATCATGAGCAA+AGG | 0.591441 | 4.3:-2830897 | MS.gene015811:CDS |
GCGCTACCATGTTACCGGAC+GGG | 0.593016 | 4.3:-2830806 | MS.gene015811:CDS |
TTACCTGCAGAAGGCTGACA+CGG | 0.596614 | 4.3:+2829889 | None:intergenic |
GAACAAGGACATGTTCGAGT+TGG | 0.597698 | 4.3:-2828803 | MS.gene015811:CDS |
GGTAAACACTGTGAAACAGA+TGG | 0.604130 | 4.3:-2830616 | MS.gene015811:CDS |
GCTTCAGTACAATGACAAGT+TGG | 0.608210 | 4.3:-2828687 | MS.gene015811:CDS |
ATAGGTATTCGAGTATATGC+CGG | 0.611429 | 4.3:-2830653 | MS.gene015811:intron |
TGTGAAACAGATGGATCCCA+AGG | 0.635519 | 4.3:-2830607 | MS.gene015811:CDS |
TTTGGAATGGAAGAGAGAAG+GGG | 0.646764 | 4.3:-2830854 | MS.gene015811:CDS |
TTACCTTGTAACTAGAAACA+TGG | 0.656200 | 4.3:-2828756 | MS.gene015811:CDS |
AGCGCTACCATGTTACCGGA+CGG | 0.657895 | 4.3:-2830807 | MS.gene015811:CDS |
ATATGGGTGTGATTCCAACC+AGG | 0.661105 | 4.3:-2829940 | MS.gene015811:CDS |
GCTGTAACTTATATTGAACA+AGG | 0.683794 | 4.3:-2828818 | MS.gene015811:CDS |
GTATTCGAGTATATGCCGGA+TGG | 0.685170 | 4.3:-2830649 | MS.gene015811:CDS |
CATGGAAGACTTGATTACAT+GGG | 0.687449 | 4.3:-2828738 | MS.gene015811:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATATTTGTTTCATAATTA+TGG | - | chr4.3:2829078-2829097 | MS.gene015811:intron | 10.0% |
!! | AAATTTAATGCATGAAAAAT+AGG | - | chr4.3:2830382-2830401 | MS.gene015811:intron | 15.0% |
!! | TAAGTTATATAACAAAACTA+TGG | + | chr4.3:2829398-2829417 | None:intergenic | 15.0% |
!!! | TGTTTTTCTTTTTTTTAGTT+TGG | - | chr4.3:2828840-2828859 | MS.gene015811:CDS | 15.0% |
!! | GTTTATTCAATCACATAAAA+TGG | + | chr4.3:2830361-2830380 | None:intergenic | 20.0% |
!! | TAAATTATATACAAGTTGCA+GGG | - | chr4.3:2829285-2829304 | MS.gene015811:intron | 20.0% |
!! | TACTAAATATTTCGATAGAT+AGG | + | chr4.3:2829949-2829968 | None:intergenic | 20.0% |
!! | TGATTGAATTACTATGTAAA+TGG | - | chr4.3:2829922-2829941 | MS.gene015811:CDS | 20.0% |
!! | TTACATATTTATGTCATGAA+TGG | + | chr4.3:2829323-2829342 | None:intergenic | 20.0% |
! | CTAATGTTAGATGTTTACTT+CGG | - | chr4.3:2830162-2830181 | MS.gene015811:intron | 25.0% |
! | GTAAATTATATACAAGTTGC+AGG | - | chr4.3:2829284-2829303 | MS.gene015811:intron | 25.0% |
! | TAATGAGCAAACAAATAAAG+TGG | + | chr4.3:2829752-2829771 | None:intergenic | 25.0% |
! | TTAGTATGTCAAAAGAAAGA+TGG | + | chr4.3:2829136-2829155 | None:intergenic | 25.0% |
! | TTTCAAAATTCAAAGCCATT+TGG | + | chr4.3:2829889-2829908 | None:intergenic | 25.0% |
! | TTTCATGACAGTTACAATAT+GGG | - | chr4.3:2829612-2829631 | MS.gene015811:intron | 25.0% |
!! | AATAGAAGCACAAATAGATT+TGG | + | chr4.3:2829188-2829207 | None:intergenic | 25.0% |
!! | ATAGAAGCACAAATAGATTT+GGG | + | chr4.3:2829187-2829206 | None:intergenic | 25.0% |
!! | ATTCATTTTCTTTGTGGAAT+TGG | - | chr4.3:2828873-2828892 | MS.gene015811:CDS | 25.0% |
!! | TCTTATTTAACTAAGAAGCT+TGG | - | chr4.3:2829859-2829878 | MS.gene015811:intron | 25.0% |
!! | TTCATTTTCTTTGTGGAATT+GGG | - | chr4.3:2828874-2828893 | MS.gene015811:CDS | 25.0% |
!! | TTTTATGTTGTTCTTGCATT+TGG | - | chr4.3:2828817-2828836 | MS.gene015811:CDS | 25.0% |
!! | TTTTCATGACAGTTACAATA+TGG | - | chr4.3:2829611-2829630 | MS.gene015811:intron | 25.0% |
!!! | AACAATCATCCTTTTTGAAA+TGG | + | chr4.3:2829462-2829481 | None:intergenic | 25.0% |
!!! | AGTTAATCAAGTTGAAACAT+TGG | - | chr4.3:2830545-2830564 | MS.gene015811:intron | 25.0% |
!!! | GCTAAGTTATCTAGTTTTAA+GGG | - | chr4.3:2830220-2830239 | MS.gene015811:intron | 25.0% |
!!! | TGAAGAATTTCATTTTTCAG+TGG | + | chr4.3:2830412-2830431 | None:intergenic | 25.0% |
!!! | TGCTAAGTTATCTAGTTTTA+AGG | - | chr4.3:2830219-2830238 | MS.gene015811:intron | 25.0% |
!!! | TTTGAGAAAGGTGAATTTTT+TGG | - | chr4.3:2828696-2828715 | MS.gene015811:CDS | 25.0% |
AAAACTAACAAGACGAGATT+AGG | + | chr4.3:2830586-2830605 | None:intergenic | 30.0% | |
AAACTAACAAGACGAGATTA+GGG | + | chr4.3:2830585-2830604 | None:intergenic | 30.0% | |
AGTGTCTATAGTTATGGATT+TGG | - | chr4.3:2830034-2830053 | MS.gene015811:intron | 30.0% | |
GCTGTAACTTATATTGAACA+AGG | - | chr4.3:2830750-2830769 | MS.gene015811:intron | 30.0% | |
GTAAACATCTAACATTAGCA+TGG | + | chr4.3:2830160-2830179 | None:intergenic | 30.0% | |
GTGGTATATATATTGTAGCA+AGG | - | chr4.3:2830326-2830345 | MS.gene015811:intron | 30.0% | |
GTGTCTATAGTTATGGATTT+GGG | - | chr4.3:2830035-2830054 | MS.gene015811:intron | 30.0% | |
TATAACTTACAAGTCTGTCT+AGG | - | chr4.3:2829409-2829428 | MS.gene015811:intron | 30.0% | |
TGATTTGAACTGAATTGTTG+TGG | - | chr4.3:2829212-2829231 | MS.gene015811:intron | 30.0% | |
TTACCTTGTAACTAGAAACA+TGG | - | chr4.3:2830812-2830831 | MS.gene015811:CDS | 30.0% | |
TTACCTTTCTTCTAATGTGA+CGG | - | chr4.3:2830479-2830498 | MS.gene015811:intron | 30.0% | |
TTCTTCCAAGATAAAGAGAA+AGG | - | chr4.3:2830857-2830876 | MS.gene015811:CDS | 30.0% | |
! | ATTGTGGTGGAAATATGAAT+AGG | - | chr4.3:2828897-2828916 | MS.gene015811:intron | 30.0% |
! | GAGGTATTAATGAACATTTC+AGG | - | chr4.3:2830059-2830078 | MS.gene015811:intron | 30.0% |
! | TAGAAGCACAAATAGATTTG+GGG | + | chr4.3:2829186-2829205 | None:intergenic | 30.0% |
! | TGATATGACTGATAAGCTTT+TGG | - | chr4.3:2828997-2829016 | MS.gene015811:intron | 30.0% |
! | TTTATCATCGTTTTGTAGCT+AGG | - | chr4.3:2830274-2830293 | MS.gene015811:intron | 30.0% |
!! | CAAGAAAGTGTCTATAGTTA+TGG | - | chr4.3:2830028-2830047 | MS.gene015811:intron | 30.0% |
!! | TAGCTGATTCATTTTCTTTG+TGG | - | chr4.3:2828867-2828886 | MS.gene015811:CDS | 30.0% |
!! | TCAAGTTGAAACATTGGTTA+TGG | - | chr4.3:2830551-2830570 | MS.gene015811:intron | 30.0% |
!!! | GAAAGGTGAATTTTTTGGAA+TGG | - | chr4.3:2828701-2828720 | MS.gene015811:CDS | 30.0% |
AACAAAGTTCGGAGCAAATT+AGG | + | chr4.3:2830662-2830681 | None:intergenic | 35.0% | |
AACGATGATAAACCATATGC+TGG | + | chr4.3:2830266-2830285 | None:intergenic | 35.0% | |
AACTAACAAGACGAGATTAG+GGG | + | chr4.3:2830584-2830603 | None:intergenic | 35.0% | |
AAGCACCTTTCTCTTTATCT+TGG | + | chr4.3:2830865-2830884 | None:intergenic | 35.0% | |
AAGTCAAAGTCTAGGAACAT+TGG | - | chr4.3:2830113-2830132 | MS.gene015811:intron | 35.0% | |
ACATGGAAGACTTGATTACA+TGG | - | chr4.3:2830829-2830848 | MS.gene015811:CDS | 35.0% | |
AGAAACAGAAGTCAAAGTCT+AGG | - | chr4.3:2830105-2830124 | MS.gene015811:intron | 35.0% | |
AGAAGAAGCAAAAAGAAAGC+AGG | + | chr4.3:2829506-2829525 | None:intergenic | 35.0% | |
AGTCAAAGTCTAGGAACATT+GGG | - | chr4.3:2830114-2830133 | MS.gene015811:intron | 35.0% | |
ATAGGTATTCGAGTATATGC+CGG | - | chr4.3:2828915-2828934 | MS.gene015811:intron | 35.0% | |
ATATATTGTAGCAAGGCCAA+GGG | - | chr4.3:2830333-2830352 | MS.gene015811:intron | 35.0% | |
ATCTAACATTAGCATGGACA+CGG | + | chr4.3:2830154-2830173 | None:intergenic | 35.0% | |
ATTATATACAAGTTGCAGGG+TGG | - | chr4.3:2829288-2829307 | MS.gene015811:intron | 35.0% | |
CATGGAAGACTTGATTACAT+GGG | - | chr4.3:2830830-2830849 | MS.gene015811:CDS | 35.0% | |
TATAGTTATGGATTTGGGTG+AGG | - | chr4.3:2830040-2830059 | MS.gene015811:intron | 35.0% | |
TATATATTGTAGCAAGGCCA+AGG | - | chr4.3:2830332-2830351 | MS.gene015811:intron | 35.0% | |
TCAGTCATATCAACTCGAAA+AGG | + | chr4.3:2828989-2829008 | None:intergenic | 35.0% | |
! | GCATGATAGTGAACAAAGTT+CGG | + | chr4.3:2830673-2830692 | None:intergenic | 35.0% |
! | GCTTTCTTTTTGCTTCTTCT+TGG | - | chr4.3:2829506-2829525 | MS.gene015811:intron | 35.0% |
! | GGATACGACACTATGATTTT+TGG | - | chr4.3:2829233-2829252 | MS.gene015811:intron | 35.0% |
! | TTACCAACTTTTGAACCATC+CGG | + | chr4.3:2828937-2828956 | None:intergenic | 35.0% |
! | TTAGACCTGCCATTTCAAAA+AGG | - | chr4.3:2829450-2829469 | MS.gene015811:intron | 35.0% |
! | TTCTAGTTACAAGGTAAGCT+GGG | + | chr4.3:2830809-2830828 | None:intergenic | 35.0% |
!! | ATACCACTTTTCATACGACT+CGG | + | chr4.3:2830313-2830332 | None:intergenic | 35.0% |
!! | CTTCCATGTTTCTAGTTACA+AGG | + | chr4.3:2830818-2830837 | None:intergenic | 35.0% |
!! | TTCTGTTTCTAGACTGTTCA+TGG | + | chr4.3:2830095-2830114 | None:intergenic | 35.0% |
!! | TTTCTAGTTACAAGGTAAGC+TGG | + | chr4.3:2830810-2830829 | None:intergenic | 35.0% |
!! | TTTTTAGCCCAAAACTTAGC+TGG | + | chr4.3:2830505-2830524 | None:intergenic | 35.0% |
!!! | ATCATCCTTTTTGAAATGGC+AGG | + | chr4.3:2829458-2829477 | None:intergenic | 35.0% |
!!! | CGGTTGTTTTAATACAGTTG+AGG | - | chr4.3:2830182-2830201 | MS.gene015811:intron | 35.0% |
!!! | GCTAAGTTTTGGGCTAAAAA+TGG | - | chr4.3:2830505-2830524 | MS.gene015811:intron | 35.0% |
!!! | TTTTGGAATGGAAGAGAGAA+GGG | - | chr4.3:2828713-2828732 | MS.gene015811:CDS | 35.0% |
!!! | TTTTTGGAATGGAAGAGAGA+AGG | - | chr4.3:2828712-2828731 | MS.gene015811:CDS | 35.0% |
AAGAAGCTTGGACTTCCAAA+TGG | - | chr4.3:2829871-2829890 | MS.gene015811:intron | 40.0% | |
AATAGTTGAACTGACTGCGA+TGG | - | chr4.3:2829347-2829366 | MS.gene015811:intron | 40.0% | |
AGACTGTTCATGGACTTTGA+AGG | + | chr4.3:2830085-2830104 | None:intergenic | 40.0% | |
ATCAACTCGAAAAGGATCCT+TGG | + | chr4.3:2828981-2829000 | None:intergenic | 40.0% | |
ATCACATAAAATGGCACCCT+TGG | + | chr4.3:2830352-2830371 | None:intergenic | 40.0% | |
CAAATAGATTTGGGGAGTCA+TGG | + | chr4.3:2829178-2829197 | None:intergenic | 40.0% | |
CAACTTTACCAACATGTGGT+TGG | - | chr4.3:2829808-2829827 | MS.gene015811:intron | 40.0% | |
GACGATGTAATGCAAAGTTG+TGG | + | chr4.3:2830640-2830659 | None:intergenic | 40.0% | |
GCTGGGTCTGTAATTGTATT+TGG | + | chr4.3:2830792-2830811 | None:intergenic | 40.0% | |
GCTTCAACTTTACCAACATG+TGG | - | chr4.3:2829804-2829823 | MS.gene015811:intron | 40.0% | |
GCTTCAGTACAATGACAAGT+TGG | - | chr4.3:2830881-2830900 | MS.gene015811:CDS | 40.0% | |
GGTAAACACTGTGAAACAGA+TGG | - | chr4.3:2828952-2828971 | MS.gene015811:intron | 40.0% | |
GTATTCAAACAAGTGAAGCC+TGG | - | chr4.3:2829966-2829985 | MS.gene015811:intron | 40.0% | |
TCAACTCGAAAAGGATCCTT+GGG | + | chr4.3:2828980-2828999 | None:intergenic | 40.0% | |
TCTTTGTGGAATTGGGATTG+TGG | - | chr4.3:2828881-2828900 | MS.gene015811:intron | 40.0% | |
! | AGCTAAAGCATCATGAGCAA+AGG | - | chr4.3:2828671-2828690 | MS.gene015811:CDS | 40.0% |
! | GAAGCCTGGCTAGTTAAATA+AGG | - | chr4.3:2829980-2829999 | MS.gene015811:intron | 40.0% |
! | GGGCAAATTTTGTCACATGA+AGG | - | chr4.3:2830240-2830259 | MS.gene015811:intron | 40.0% |
! | TTTGGAATGGAAGAGAGAAG+GGG | - | chr4.3:2828714-2828733 | MS.gene015811:CDS | 40.0% |
!! | CTTGCCTTATTTAACTAGCC+AGG | + | chr4.3:2829987-2830006 | None:intergenic | 40.0% |
!! | TGAGCAAAGGCTTTTGAGAA+AGG | - | chr4.3:2828684-2828703 | MS.gene015811:CDS | 40.0% |
AACTGACTGCGATGGTTCTT+CGG | - | chr4.3:2829355-2829374 | MS.gene015811:intron | 45.0% | |
ACATAGTGTGATGCTTTGCC+TGG | + | chr4.3:2829649-2829668 | None:intergenic | 45.0% | |
ATATGGGTGTGATTCCAACC+AGG | - | chr4.3:2829628-2829647 | MS.gene015811:intron | 45.0% | |
ATGCCGGATGGTTCAAAAGT+TGG | - | chr4.3:2828931-2828950 | MS.gene015811:intron | 45.0% | |
CTTCCGAGTCGTATGAAAAG+TGG | - | chr4.3:2830307-2830326 | MS.gene015811:intron | 45.0% | |
GAACAAGGACATGTTCGAGT+TGG | - | chr4.3:2830765-2830784 | MS.gene015811:intron | 45.0% | |
GGAAGACTTGATTACATGGG+TGG | - | chr4.3:2830833-2830852 | MS.gene015811:CDS | 45.0% | |
GTATTCGAGTATATGCCGGA+TGG | - | chr4.3:2828919-2828938 | MS.gene015811:intron | 45.0% | |
GTTCACTATCATGCAGACGT+AGG | - | chr4.3:2830679-2830698 | MS.gene015811:intron | 45.0% | |
TGGCCGTCACATTAGAAGAA+AGG | + | chr4.3:2830485-2830504 | None:intergenic | 45.0% | |
TGTCTGAGTGCTAAGAAGCT+TGG | - | chr4.3:2829833-2829852 | MS.gene015811:intron | 45.0% | |
TGTGAAACAGATGGATCCCA+AGG | - | chr4.3:2828961-2828980 | MS.gene015811:intron | 45.0% | |
TTGGAATGGAAGAGAGAAGG+GGG | - | chr4.3:2828715-2828734 | MS.gene015811:CDS | 45.0% | |
TTGTGGAATTGGGATTGTGG+TGG | - | chr4.3:2828884-2828903 | MS.gene015811:intron | 45.0% | |
! | ACGTAGGCTCTCAACTGTTT+TGG | - | chr4.3:2830695-2830714 | MS.gene015811:intron | 45.0% |
! | CTTTTTGTAATCGTCCCGTC+CGG | + | chr4.3:2828779-2828798 | None:intergenic | 45.0% |
! | GTGTTCCTTTTACCTGCAGA+AGG | + | chr4.3:2829691-2829710 | None:intergenic | 45.0% |
AGTGTGATGCTTTGCCTGGT+TGG | + | chr4.3:2829645-2829664 | None:intergenic | 50.0% | |
ATGCAGCGCTACCATGTTAC+CGG | - | chr4.3:2828757-2828776 | MS.gene015811:CDS | 50.0% | |
CAGACAGACCAACCACATGT+TGG | + | chr4.3:2829819-2829838 | None:intergenic | 50.0% | |
GTCACATGAAGGCCAGCATA+TGG | - | chr4.3:2830251-2830270 | MS.gene015811:intron | 50.0% | |
GTCAGCCTTCTGCAGGTAAA+AGG | - | chr4.3:2829683-2829702 | MS.gene015811:intron | 50.0% | |
TTACCTGCAGAAGGCTGACA+CGG | + | chr4.3:2829682-2829701 | None:intergenic | 50.0% | |
! | GTGACGGCCAGCTAAGTTTT+GGG | - | chr4.3:2830495-2830514 | MS.gene015811:intron | 50.0% |
! | TGTGACGGCCAGCTAAGTTT+TGG | - | chr4.3:2830494-2830513 | MS.gene015811:intron | 50.0% |
AATCGTCCCGTCCGGTAACA+TGG | + | chr4.3:2828771-2828790 | None:intergenic | 55.0% | |
AGCGCTACCATGTTACCGGA+CGG | - | chr4.3:2828761-2828780 | MS.gene015811:CDS | 55.0% | |
AGGGGGTCACAGAGAGAACA+TGG | - | chr4.3:2828732-2828751 | MS.gene015811:CDS | 55.0% | |
TAACCGTGTCAGCCTTCTGC+AGG | - | chr4.3:2829676-2829695 | MS.gene015811:intron | 55.0% | |
GCGCTACCATGTTACCGGAC+GGG | - | chr4.3:2828762-2828781 | MS.gene015811:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 2828664 | 2830926 | 2828664 | ID=MS.gene015811 |
chr4.3 | mRNA | 2828664 | 2830926 | 2828664 | ID=MS.gene015811.t1;Parent=MS.gene015811 |
chr4.3 | exon | 2830793 | 2830926 | 2830793 | ID=MS.gene015811.t1.exon1;Parent=MS.gene015811.t1 |
chr4.3 | CDS | 2830793 | 2830926 | 2830793 | ID=cds.MS.gene015811.t1;Parent=MS.gene015811.t1 |
chr4.3 | exon | 2830564 | 2830671 | 2830564 | ID=MS.gene015811.t1.exon2;Parent=MS.gene015811.t1 |
chr4.3 | CDS | 2830564 | 2830671 | 2830564 | ID=cds.MS.gene015811.t1;Parent=MS.gene015811.t1 |
chr4.3 | exon | 2829893 | 2829967 | 2829893 | ID=MS.gene015811.t1.exon3;Parent=MS.gene015811.t1 |
chr4.3 | CDS | 2829893 | 2829967 | 2829893 | ID=cds.MS.gene015811.t1;Parent=MS.gene015811.t1 |
chr4.3 | exon | 2828664 | 2828895 | 2828664 | ID=MS.gene015811.t1.exon4;Parent=MS.gene015811.t1 |
chr4.3 | CDS | 2828664 | 2828895 | 2828664 | ID=cds.MS.gene015811.t1;Parent=MS.gene015811.t1 |
Gene Sequence |
Protein sequence |