Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66593.t1 | XP_003630714.1 | 97.3 | 182 | 5 | 0 | 1 | 182 | 1 | 182 | 1.90E-94 | 355.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66593.t1 | P32899 | 55.0 | 180 | 80 | 1 | 1 | 179 | 2 | 181 | 5.2e-53 | 208.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66593.t1 | B7FMK3 | 97.3 | 182 | 5 | 0 | 1 | 182 | 1 | 182 | 1.4e-94 | 355.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66593.t1 | MTR_8g102530 | 97.253 | 182 | 5 | 0 | 1 | 182 | 1 | 182 | 1.70e-132 | 368 |
MS.gene66593.t1 | MTR_8g102530 | 92.857 | 182 | 4 | 1 | 1 | 182 | 1 | 173 | 6.66e-123 | 344 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66593.t1 | AT5G15750 | 79.006 | 181 | 38 | 0 | 1 | 181 | 1 | 181 | 2.90e-108 | 307 |
Find 40 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGGGTCTGTAATTGTATT+TGG | 0.229997 | 4.3:+49950943 | None:intergenic |
TGATATGACTGATAAGCTTT+TGG | 0.287922 | 4.3:-49952658 | MS.gene66593:CDS |
AGCTGTAACTTATATTGAAC+AGG | 0.366283 | 4.3:-49950983 | MS.gene66593:CDS |
AAGCACCTTTCTCTTTATCT+TGG | 0.381545 | 4.3:+49950870 | None:intergenic |
ACGTAGGCTCTCAACTGTTT+TGG | 0.388493 | 4.3:-49951037 | MS.gene66593:CDS |
TTTAATGACAGTTACAATAT+GGG | 0.424343 | 4.3:-49952068 | MS.gene66593:intron |
ATCAACTCGGAAAGGTTCCT+TGG | 0.425381 | 4.3:+49952677 | None:intergenic |
CTTCCATGTTTCTAGTTACA+AGG | 0.426456 | 4.3:+49950917 | None:intergenic |
TTTCTAGTTACAAGGTAAGC+TGG | 0.444914 | 4.3:+49950925 | None:intergenic |
ACATAGTGTGATGCTTTGCC+TGG | 0.454332 | 4.3:+49952034 | None:intergenic |
TTGGAATGGAAGAGAGAAGG+AGG | 0.499925 | 4.3:-49952940 | MS.gene66593:CDS |
ATGCCGGATGGTTCAGAAGT+TGG | 0.502345 | 4.3:-49952724 | MS.gene66593:CDS |
ATGCAGCGCTACCATGTTAC+CGG | 0.507249 | 4.3:-49952898 | MS.gene66593:CDS |
TCAACTCGGAAAGGTTCCTT+GGG | 0.524183 | 4.3:+49952678 | None:intergenic |
TTCTAGTTACAAGGTAAGCT+GGG | 0.525625 | 4.3:+49950926 | None:intergenic |
AGTGTGATGCTTTGCCTGGT+TGG | 0.526362 | 4.3:+49952038 | None:intergenic |
TAACCGTGTCAGCCTTATGC+AGG | 0.538554 | 4.3:-49952004 | MS.gene66593:intron |
GCGCTACCATGTTACCGGTC+GGG | 0.546021 | 4.3:-49952893 | MS.gene66593:CDS |
AATCGTCCCGACCGGTAACA+TGG | 0.550659 | 4.3:+49952887 | None:intergenic |
ACATGGAAGACATGATTACA+TGG | 0.553951 | 4.3:-49950903 | MS.gene66593:CDS |
TTACCAACTTCTGAACCATC+CGG | 0.558041 | 4.3:+49952721 | None:intergenic |
TTCTTCCAAGATAAAGAGAA+AGG | 0.564085 | 4.3:-49950875 | MS.gene66593:CDS |
AGGAGGTCACAGAGAGAACA+TGG | 0.568486 | 4.3:-49952923 | MS.gene66593:CDS |
ATAGGTATTCGAGTATATGC+CGG | 0.597856 | 4.3:-49952740 | MS.gene66593:intron |
GAACAGGGACATGTTCGAGT+TGG | 0.599994 | 4.3:-49950967 | MS.gene66593:CDS |
GGTAAACACGGTGAAACAGA+TGG | 0.602021 | 4.3:-49952703 | MS.gene66593:CDS |
GCTTCAGTACAATGACAAGT+TGG | 0.608210 | 4.3:-49950851 | MS.gene66593:CDS |
TTACCTGCATAAGGCTGACA+CGG | 0.608409 | 4.3:+49952001 | None:intergenic |
GGAAGACATGATTACATGGG+TGG | 0.620356 | 4.3:-49950899 | MS.gene66593:CDS |
AGCTAAAGCATCATGAGCAT+AGG | 0.623806 | 4.3:-49952984 | MS.gene66593:CDS |
TCAGTCATATCAACTCGGAA+AGG | 0.626960 | 4.3:+49952669 | None:intergenic |
AGCGCTACCATGTTACCGGT+CGG | 0.636484 | 4.3:-49952894 | MS.gene66593:CDS |
GGTTCAGAAGTTGGTAAACA+CGG | 0.643580 | 4.3:-49952715 | MS.gene66593:CDS |
GGTGAAACAGATGGATCCCA+AGG | 0.652966 | 4.3:-49952694 | MS.gene66593:CDS |
TTACCTTGTAACTAGAAACA+TGG | 0.656200 | 4.3:-49950920 | MS.gene66593:CDS |
ATATGGGTGTGATTCCAACC+AGG | 0.661105 | 4.3:-49952052 | MS.gene66593:CDS |
GCTTATCAGTCATATCAACT+CGG | 0.663758 | 4.3:+49952664 | None:intergenic |
GTATTCGAGTATATGCCGGA+TGG | 0.685170 | 4.3:-49952736 | MS.gene66593:CDS |
CATGGAAGACATGATTACAT+GGG | 0.691863 | 4.3:-49950902 | MS.gene66593:CDS |
GCTGTAACTTATATTGAACA+GGG | 0.722848 | 4.3:-49950982 | MS.gene66593:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTAAATTTAATAGAAAAAT+AGG | - | chr4.3:49952470-49952489 | MS.gene66593:intron | 10.0% |
!! | TAATATTTGTTTCATAATTA+TGG | - | chr4.3:49951242-49951261 | MS.gene66593:intron | 10.0% |
!!! | ATTTTCATATGAAAAAAATA+AGG | - | chr4.3:49951908-49951927 | MS.gene66593:intron | 10.0% |
!! | TAAATTATATACAAGTTACA+GGG | - | chr4.3:49951411-49951430 | MS.gene66593:intron | 15.0% |
!! | TAAGTTATATAACAAAACTA+TGG | + | chr4.3:49951548-49951567 | None:intergenic | 15.0% |
!!! | TATTTTTCTTTGTTTTAGTT+TGG | - | chr4.3:49951004-49951023 | MS.gene66593:CDS | 15.0% |
!! | AAATGAAATGTGATGAAAAT+AGG | - | chr4.3:49951480-49951499 | MS.gene66593:intron | 20.0% |
!! | AGTTAATAAAGTTGAAACAT+TGG | - | chr4.3:49952632-49952651 | MS.gene66593:intron | 20.0% |
!! | GTAAATTATATACAAGTTAC+AGG | - | chr4.3:49951410-49951429 | MS.gene66593:intron | 20.0% |
!! | TTTAATGACAGTTACAATAT+GGG | - | chr4.3:49951751-49951770 | MS.gene66593:intron | 20.0% |
!! | TTTATGACATTCACATAAAA+TGG | + | chr4.3:49952451-49952470 | None:intergenic | 20.0% |
!!! | TATTTTCATCACATTTCATT+TGG | + | chr4.3:49951481-49951500 | None:intergenic | 20.0% |
!!! | TTGAAGAATTTCATTTTTCA+GGG | + | chr4.3:49952501-49952520 | None:intergenic | 20.0% |
!!! | TTTTAATGACAGTTACAATA+TGG | - | chr4.3:49951750-49951769 | MS.gene66593:intron | 20.0% |
!!! | TTTTTTATATCAAACCCATT+TGG | + | chr4.3:49952018-49952037 | None:intergenic | 20.0% |
! | AGATTATGTCAAAAGAAAGA+TGG | + | chr4.3:49951304-49951323 | None:intergenic | 25.0% |
! | ATGACATAAATAGTGAATAC+AGG | - | chr4.3:49951452-49951471 | MS.gene66593:intron | 25.0% |
! | CTATCTATCGAAATATTTAG+TGG | - | chr4.3:49952073-49952092 | MS.gene66593:intron | 25.0% |
! | TATAACTTACAAGTTTGTCT+AGG | - | chr4.3:49951559-49951578 | MS.gene66593:intron | 25.0% |
! | TGAATGAATTACTGCATAAA+TGG | - | chr4.3:49952048-49952067 | MS.gene66593:CDS | 25.0% |
!! | ATTCATTTTCTTTGTGGAAT+TGG | - | chr4.3:49951037-49951056 | MS.gene66593:CDS | 25.0% |
!! | ATTGTGGTGGAAATATTAAT+AGG | - | chr4.3:49951061-49951080 | MS.gene66593:intron | 25.0% |
!! | TAAAGTTGAAACATTGGTTA+TGG | - | chr4.3:49952638-49952657 | MS.gene66593:intron | 25.0% |
!! | TTCATTTTCTTTGTGGAATT+GGG | - | chr4.3:49951038-49951057 | MS.gene66593:CDS | 25.0% |
!! | TTTTATGTTGTTCTTGCATT+TGG | - | chr4.3:49950981-49951000 | MS.gene66593:CDS | 25.0% |
!!! | AACAATCATCCTTTTTGAAA+TGG | + | chr4.3:49951612-49951631 | None:intergenic | 25.0% |
!!! | GAGGTATTAATGAACATTTT+AGG | - | chr4.3:49952199-49952218 | MS.gene66593:intron | 25.0% |
!!! | GTTGAAGAATTTCATTTTTC+AGG | + | chr4.3:49952502-49952521 | None:intergenic | 25.0% |
!!! | TGAAGAATTTCATTTTTCAG+GGG | + | chr4.3:49952500-49952519 | None:intergenic | 25.0% |
!!! | TTTGAGAAAGGTGAATTTTT+TGG | - | chr4.3:49950860-49950879 | MS.gene66593:CDS | 25.0% |
AAAACTAACAAGACGAGATT+AGG | + | chr4.3:49952673-49952692 | None:intergenic | 30.0% | |
AAACTAACAAGACGAGATTA+GGG | + | chr4.3:49952672-49952691 | None:intergenic | 30.0% | |
AACAAAATTCGGAGCAAATT+AGG | + | chr4.3:49952749-49952768 | None:intergenic | 30.0% | |
AGCTGTAACTTATATTGAAC+AGG | - | chr4.3:49952836-49952855 | MS.gene66593:intron | 30.0% | |
AGTGTCTATAGTTATGGATT+TGG | - | chr4.3:49952174-49952193 | MS.gene66593:intron | 30.0% | |
ATAAGAAGCAAAAAGAAAGC+AGG | + | chr4.3:49951646-49951665 | None:intergenic | 30.0% | |
ATTATATACAAGTTACAGGG+TGG | - | chr4.3:49951414-49951433 | MS.gene66593:intron | 30.0% | |
CATCAATTCAGTTCAAATGA+AGG | + | chr4.3:49951338-49951357 | None:intergenic | 30.0% | |
GCTGTAACTTATATTGAACA+GGG | - | chr4.3:49952837-49952856 | MS.gene66593:intron | 30.0% | |
GTAATCATCTAACATTAGCA+TGG | - | chr4.3:49952289-49952308 | MS.gene66593:intron | 30.0% | |
GTGTCTATAGTTATGGATTT+GGG | - | chr4.3:49952175-49952194 | MS.gene66593:intron | 30.0% | |
TAATGAGCAAACAGATAAAG+TGG | + | chr4.3:49951882-49951901 | None:intergenic | 30.0% | |
TCAAAAAGGATGATTGTTCT+AGG | - | chr4.3:49951614-49951633 | MS.gene66593:intron | 30.0% | |
TCATCTTAAACAAATAGTCC+TGG | - | chr4.3:49951988-49952007 | MS.gene66593:intron | 30.0% | |
TTACCTTGTAACTAGAAACA+TGG | - | chr4.3:49952899-49952918 | MS.gene66593:CDS | 30.0% | |
TTATCTTTCTTCTAATGCGA+CGG | - | chr4.3:49952566-49952585 | MS.gene66593:intron | 30.0% | |
TTCTTCCAAGATAAAGAGAA+AGG | - | chr4.3:49952944-49952963 | MS.gene66593:CDS | 30.0% | |
TTTATATTCGCTTTGTAGCT+AGG | - | chr4.3:49952388-49952407 | MS.gene66593:intron | 30.0% | |
! | GCATGATAGTGAACAAAATT+CGG | + | chr4.3:49952760-49952779 | None:intergenic | 30.0% |
! | GCTTTCTTTTTGCTTCTTAT+TGG | - | chr4.3:49951646-49951665 | MS.gene66593:intron | 30.0% |
! | TGATATGACTGATAAGCTTT+TGG | - | chr4.3:49951161-49951180 | MS.gene66593:intron | 30.0% |
!! | CAAGAAAGTGTCTATAGTTA+TGG | - | chr4.3:49952168-49952187 | MS.gene66593:intron | 30.0% |
!! | TAGCTGATTCATTTTCTTTG+TGG | - | chr4.3:49951031-49951050 | MS.gene66593:CDS | 30.0% |
!! | TTTTTAGCCCAAAACTTAGT+TGG | + | chr4.3:49952592-49952611 | None:intergenic | 30.0% |
!!! | ACTAAGTTTTGGGCTAAAAA+TGG | - | chr4.3:49952592-49952611 | MS.gene66593:intron | 30.0% |
!!! | CAGTTGTTTTAATACAGTAG+AGG | + | chr4.3:49952267-49952286 | None:intergenic | 30.0% |
!!! | GAAAGGTGAATTTTTTGGAA+TGG | - | chr4.3:49950865-49950884 | MS.gene66593:CDS | 30.0% |
AAGCACCTTTCTCTTTATCT+TGG | + | chr4.3:49952952-49952971 | None:intergenic | 35.0% | |
ACATGGAAGACATGATTACA+TGG | - | chr4.3:49952916-49952935 | MS.gene66593:CDS | 35.0% | |
ATACTCCTATTTAACTAGCC+TGG | + | chr4.3:49952119-49952138 | None:intergenic | 35.0% | |
ATAGGTATTCGAGTATATGC+CGG | - | chr4.3:49951079-49951098 | MS.gene66593:intron | 35.0% | |
ATCTAACATTAGCATGGACA+TGG | - | chr4.3:49952295-49952314 | MS.gene66593:intron | 35.0% | |
CATGGAAGACATGATTACAT+GGG | - | chr4.3:49952917-49952936 | MS.gene66593:CDS | 35.0% | |
GCTTATCAGTCATATCAACT+CGG | + | chr4.3:49951158-49951177 | None:intergenic | 35.0% | |
TATAGTTATGGATTTGGGTG+AGG | - | chr4.3:49952180-49952199 | MS.gene66593:intron | 35.0% | |
! | AGATACGACACTATGAGTTT+TGG | - | chr4.3:49951359-49951378 | MS.gene66593:intron | 35.0% |
! | ATTTTAGGCCTTCAAAGTCT+AGG | - | chr4.3:49952214-49952233 | MS.gene66593:intron | 35.0% |
! | GCCAAGTTATCTAGTTTCAA+GGG | - | chr4.3:49952334-49952353 | MS.gene66593:intron | 35.0% |
! | GGCTAGTTAAATAGGAGTAT+AGG | - | chr4.3:49952119-49952138 | MS.gene66593:intron | 35.0% |
! | TGCCAAGTTATCTAGTTTCA+AGG | - | chr4.3:49952333-49952352 | MS.gene66593:intron | 35.0% |
! | TTAGACCTGCCATTTCAAAA+AGG | - | chr4.3:49951600-49951619 | MS.gene66593:intron | 35.0% |
! | TTCTAGTTACAAGGTAAGCT+GGG | + | chr4.3:49952896-49952915 | None:intergenic | 35.0% |
!! | CTTCCATGTTTCTAGTTACA+AGG | + | chr4.3:49952905-49952924 | None:intergenic | 35.0% |
!! | TTTCTAGTTACAAGGTAAGC+TGG | + | chr4.3:49952897-49952916 | None:intergenic | 35.0% |
!!! | ATCATCCTTTTTGAAATGGC+AGG | + | chr4.3:49951608-49951627 | None:intergenic | 35.0% |
!!! | TTTTTGGAATGGAAGAGAGA+AGG | - | chr4.3:49950876-49950895 | MS.gene66593:CDS | 35.0% |
AACTGACTGCAATGGTTCAT+TGG | - | chr4.3:49951505-49951524 | MS.gene66593:intron | 40.0% | |
AATAGGTGAACTGACTGCAA+TGG | - | chr4.3:49951497-49951516 | MS.gene66593:intron | 40.0% | |
AATAGTCCTGGAGTTCCAAA+TGG | - | chr4.3:49952000-49952019 | MS.gene66593:intron | 40.0% | |
AGACTGTTCCTAGACTTTGA+AGG | + | chr4.3:49952225-49952244 | None:intergenic | 40.0% | |
ATAGTCCTGGAGTTCCAAAT+GGG | - | chr4.3:49952001-49952020 | MS.gene66593:intron | 40.0% | |
GACGATGTAATGCAAAGTTG+AGG | + | chr4.3:49952727-49952746 | None:intergenic | 40.0% | |
GCCCTTGAAACTAGATAACT+TGG | + | chr4.3:49952338-49952357 | None:intergenic | 40.0% | |
GCTGGGTCTGTAATTGTATT+TGG | + | chr4.3:49952879-49952898 | None:intergenic | 40.0% | |
GCTTCAGTACAATGACAAGT+TGG | - | chr4.3:49952968-49952987 | MS.gene66593:CDS | 40.0% | |
GTCACATGAAGGTCAACATA+TGG | - | chr4.3:49952365-49952384 | MS.gene66593:intron | 40.0% | |
TCACTATTCCGAGTCGTATA+AGG | - | chr4.3:49952416-49952435 | MS.gene66593:intron | 40.0% | |
TCAGTCATATCAACTCGGAA+AGG | + | chr4.3:49951153-49951172 | None:intergenic | 40.0% | |
TCTTTGTGGAATTGGGATTG+TGG | - | chr4.3:49951045-49951064 | MS.gene66593:intron | 40.0% | |
TTACCAACTTCTGAACCATC+CGG | + | chr4.3:49951101-49951120 | None:intergenic | 40.0% | |
TTCACATAAAATGGCACCCT+TGG | + | chr4.3:49952442-49952461 | None:intergenic | 40.0% | |
! | AGATTTTGCCAACATGTGGT+TGG | - | chr4.3:49951940-49951959 | MS.gene66593:intron | 40.0% |
! | AGCTAAAGCATCATGAGCAT+AGG | - | chr4.3:49950835-49950854 | MS.gene66593:CDS | 40.0% |
! | CTTCAGATTTTGCCAACATG+TGG | - | chr4.3:49951936-49951955 | MS.gene66593:intron | 40.0% |
! | GGGCAAATTTTGTCACATGA+AGG | - | chr4.3:49952354-49952373 | MS.gene66593:intron | 40.0% |
! | GTGTTCCTTTTACCTGCATA+AGG | + | chr4.3:49951830-49951849 | None:intergenic | 40.0% |
!! | GGTTCAGAAGTTGGTAAACA+CGG | - | chr4.3:49951104-49951123 | MS.gene66593:intron | 40.0% |
!! | TGAGCATAGGCTTTTGAGAA+AGG | - | chr4.3:49950848-49950867 | MS.gene66593:CDS | 40.0% |
ACATAGTGTGATGCTTTGCC+TGG | + | chr4.3:49951788-49951807 | None:intergenic | 45.0% | |
ATATGGGTGTGATTCCAACC+AGG | - | chr4.3:49951767-49951786 | MS.gene66593:intron | 45.0% | |
ATCAACTCGGAAAGGTTCCT+TGG | + | chr4.3:49951145-49951164 | None:intergenic | 45.0% | |
CAGACATACCAACCACATGT+TGG | + | chr4.3:49951951-49951970 | None:intergenic | 45.0% | |
GGAAGACATGATTACATGGG+TGG | - | chr4.3:49952920-49952939 | MS.gene66593:CDS | 45.0% | |
GGTAAACACGGTGAAACAGA+TGG | - | chr4.3:49951116-49951135 | MS.gene66593:intron | 45.0% | |
GTATTCGAGTATATGCCGGA+TGG | - | chr4.3:49951083-49951102 | MS.gene66593:intron | 45.0% | |
GTTCACTATCATGCAGACGT+AGG | - | chr4.3:49952766-49952785 | MS.gene66593:intron | 45.0% | |
TCAACTCGGAAAGGTTCCTT+GGG | + | chr4.3:49951144-49951163 | None:intergenic | 45.0% | |
TGGTATGTCTGAGTGCTAAG+AGG | - | chr4.3:49951960-49951979 | MS.gene66593:intron | 45.0% | |
TGGTCAAACAAGTGAAGCCA+GGG | - | chr4.3:49952093-49952112 | MS.gene66593:intron | 45.0% | |
TTACCTGCATAAGGCTGACA+CGG | + | chr4.3:49951821-49951840 | None:intergenic | 45.0% | |
TTGGAATGGAAGAGAGAAGG+AGG | - | chr4.3:49950879-49950898 | MS.gene66593:CDS | 45.0% | |
TTGTGGAATTGGGATTGTGG+TGG | - | chr4.3:49951048-49951067 | MS.gene66593:intron | 45.0% | |
! | ACGTAGGCTCTCAACTGTTT+TGG | - | chr4.3:49952782-49952801 | MS.gene66593:intron | 45.0% |
! | CTTTTTGTAATCGTCCCGAC+CGG | + | chr4.3:49950943-49950962 | None:intergenic | 45.0% |
! | GTCAGCCTTATGCAGGTAAA+AGG | - | chr4.3:49951822-49951841 | MS.gene66593:intron | 45.0% |
! | TCAAACCCATTTGGAACTCC+AGG | + | chr4.3:49952009-49952028 | None:intergenic | 45.0% |
AGGAGGTCACAGAGAGAACA+TGG | - | chr4.3:49950896-49950915 | MS.gene66593:CDS | 50.0% | |
AGTGTGATGCTTTGCCTGGT+TGG | + | chr4.3:49951784-49951803 | None:intergenic | 50.0% | |
ATGCAGCGCTACCATGTTAC+CGG | - | chr4.3:49950921-49950940 | MS.gene66593:CDS | 50.0% | |
ATGCCGGATGGTTCAGAAGT+TGG | - | chr4.3:49951095-49951114 | MS.gene66593:intron | 50.0% | |
GAACAGGGACATGTTCGAGT+TGG | - | chr4.3:49952852-49952871 | MS.gene66593:intron | 50.0% | |
GGTGAAACAGATGGATCCCA+AGG | - | chr4.3:49951125-49951144 | MS.gene66593:intron | 50.0% | |
GTGGTCAAACAAGTGAAGCC+AGG | - | chr4.3:49952092-49952111 | MS.gene66593:intron | 50.0% | |
TCCGAGTCGTATAAGGCCAA+GGG | - | chr4.3:49952423-49952442 | MS.gene66593:intron | 50.0% | |
TGTCTGAGTGCTAAGAGGCT+TGG | - | chr4.3:49951965-49951984 | MS.gene66593:intron | 50.0% | |
TTCCGAGTCGTATAAGGCCA+AGG | - | chr4.3:49952422-49952441 | MS.gene66593:intron | 50.0% | |
! | CAGGGCCAGGCTAGTTAAAT+AGG | - | chr4.3:49952111-49952130 | MS.gene66593:intron | 50.0% |
! | CTATTTAACTAGCCTGGCCC+TGG | + | chr4.3:49952113-49952132 | None:intergenic | 50.0% |
! | GCGACGGCCAACTAAGTTTT+GGG | - | chr4.3:49952582-49952601 | MS.gene66593:intron | 50.0% |
! | TAACCGTGTCAGCCTTATGC+AGG | - | chr4.3:49951815-49951834 | MS.gene66593:intron | 50.0% |
! | TGCGACGGCCAACTAAGTTT+TGG | - | chr4.3:49952581-49952600 | MS.gene66593:intron | 50.0% |
!! | ACCCTTGGCCTTATACGACT+CGG | + | chr4.3:49952427-49952446 | None:intergenic | 50.0% |
AAACAAGTGAAGCCAGGGCC+AGG | - | chr4.3:49952098-49952117 | MS.gene66593:intron | 55.0% | |
AATCGTCCCGACCGGTAACA+TGG | + | chr4.3:49950935-49950954 | None:intergenic | 55.0% | |
AGCGCTACCATGTTACCGGT+CGG | - | chr4.3:49950925-49950944 | MS.gene66593:CDS | 55.0% | |
GCGCTACCATGTTACCGGTC+GGG | - | chr4.3:49950926-49950945 | MS.gene66593:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 49950828 | 49953013 | 49950828 | ID=MS.gene66593 |
chr4.3 | mRNA | 49950828 | 49953013 | 49950828 | ID=MS.gene66593.t1;Parent=MS.gene66593 |
chr4.3 | exon | 49952880 | 49953013 | 49952880 | ID=MS.gene66593.t1.exon1;Parent=MS.gene66593.t1 |
chr4.3 | CDS | 49952880 | 49953013 | 49952880 | ID=cds.MS.gene66593.t1;Parent=MS.gene66593.t1 |
chr4.3 | exon | 49952651 | 49952758 | 49952651 | ID=MS.gene66593.t1.exon2;Parent=MS.gene66593.t1 |
chr4.3 | CDS | 49952651 | 49952758 | 49952651 | ID=cds.MS.gene66593.t1;Parent=MS.gene66593.t1 |
chr4.3 | exon | 49952005 | 49952079 | 49952005 | ID=MS.gene66593.t1.exon3;Parent=MS.gene66593.t1 |
chr4.3 | CDS | 49952005 | 49952079 | 49952005 | ID=cds.MS.gene66593.t1;Parent=MS.gene66593.t1 |
chr4.3 | exon | 49950828 | 49951059 | 49950828 | ID=MS.gene66593.t1.exon4;Parent=MS.gene66593.t1 |
chr4.3 | CDS | 49950828 | 49951059 | 49950828 | ID=cds.MS.gene66593.t1;Parent=MS.gene66593.t1 |
Gene Sequence |
Protein sequence |