Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060761.t1 | XP_003605528.1 | 96 | 199 | 5 | 2 | 1 | 196 | 1 | 199 | 9.70E-97 | 362.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060761.t1 | Q5P316 | 34.4 | 93 | 60 | 1 | 103 | 195 | 26 | 117 | 4.2e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060761.t1 | G7JN88 | 96.0 | 199 | 5 | 2 | 1 | 196 | 1 | 199 | 7.0e-97 | 362.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051949 | MS.gene060761 | 0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene060761 | 0.81201 | 5.26E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene060761 | 0.806376 | 8.48E-50 | -1.69E-46 |
| MS.gene060761 | MS.gene062930 | 0.812943 | 3.29E-51 | -1.69E-46 |
| MS.gene060761 | MS.gene063413 | 0.828441 | 8.98E-55 | -1.69E-46 |
| MS.gene060761 | MS.gene20448 | 0.800219 | 1.60E-48 | -1.69E-46 |
| MS.gene060761 | MS.gene24329 | 0.824933 | 6.17E-54 | -1.69E-46 |
| MS.gene060761 | MS.gene26917 | 0.822093 | 2.85E-53 | -1.69E-46 |
| MS.gene060761 | MS.gene27358 | 0.823633 | 1.25E-53 | -1.69E-46 |
| MS.gene060761 | MS.gene29925 | 0.802132 | 6.49E-49 | -1.69E-46 |
| MS.gene060761 | MS.gene37487 | 0.811935 | 5.46E-51 | -1.69E-46 |
| MS.gene060761 | MS.gene51808 | 0.824968 | 6.05E-54 | -1.69E-46 |
| MS.gene060761 | MS.gene54080 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene060761 | MS.gene66305 | 0.815792 | 7.71E-52 | -1.69E-46 |
| MS.gene060761 | MS.gene75231 | 0.800491 | 1.41E-48 | -1.69E-46 |
| MS.gene060761 | MS.gene76525 | 0.803645 | 3.16E-49 | -1.69E-46 |
| MS.gene060761 | MS.gene77566 | 0.808773 | 2.63E-50 | -1.69E-46 |
| MS.gene060761 | MS.gene84483 | 0.809847 | 1.55E-50 | -1.69E-46 |
| MS.gene060761 | MS.gene87369 | 0.802919 | 4.46E-49 | -1.69E-46 |
| MS.gene060761 | MS.gene90765 | 0.821386 | 4.15E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060761.t1 | MTR_4g032660 | 95.980 | 199 | 5 | 2 | 1 | 196 | 1 | 199 | 2.29e-137 | 382 |
| MS.gene060761.t1 | MTR_3g012540 | 46.154 | 117 | 62 | 1 | 78 | 193 | 64 | 180 | 6.30e-31 | 111 |
| MS.gene060761.t1 | MTR_5g006310 | 38.739 | 111 | 68 | 0 | 83 | 193 | 226 | 336 | 2.45e-21 | 90.5 |
| MS.gene060761.t1 | MTR_1g114200 | 32.990 | 97 | 65 | 0 | 97 | 193 | 15 | 111 | 4.93e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060761.t1 | AT3G20230 | 66.460 | 161 | 51 | 1 | 36 | 196 | 29 | 186 | 3.69e-78 | 232 |
| MS.gene060761.t1 | AT1G08845 | 41.322 | 121 | 71 | 0 | 73 | 193 | 62 | 182 | 2.74e-29 | 107 |
| MS.gene060761.t1 | AT1G08845 | 41.322 | 121 | 71 | 0 | 73 | 193 | 62 | 182 | 2.74e-29 | 107 |
| MS.gene060761.t1 | AT1G08845 | 41.322 | 121 | 71 | 0 | 73 | 193 | 107 | 227 | 3.59e-29 | 108 |
| MS.gene060761.t1 | AT5G27820 | 34.021 | 97 | 64 | 0 | 97 | 193 | 15 | 111 | 7.39e-18 | 75.9 |
| MS.gene060761.t1 | AT3G22450 | 39.655 | 116 | 69 | 1 | 79 | 193 | 175 | 290 | 6.13e-15 | 72.0 |
| MS.gene060761.t1 | AT3G22450 | 39.655 | 116 | 69 | 1 | 79 | 193 | 175 | 290 | 6.13e-15 | 72.0 |
Find 39 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGATTGTTGGAGTTT+GGG | 0.214382 | 4.4:+71190429 | None:intergenic |
| CCTGAAGCTTGTAGAGTAAT+TGG | 0.243088 | 4.4:-71187583 | MS.gene060761:CDS |
| ACTTTGGGATTGTTGGAGTT+TGG | 0.258651 | 4.4:+71190428 | None:intergenic |
| CGCTTCCATGATTTCCTGCT+GGG | 0.263722 | 4.4:+71187763 | None:intergenic |
| TCAATCCTTTCATTCTTTCT+CGG | 0.316725 | 4.4:+71187505 | None:intergenic |
| CCGCTTCCATGATTTCCTGC+TGG | 0.319690 | 4.4:+71187762 | None:intergenic |
| CCAATTACTCTACAAGCTTC+AGG | 0.324712 | 4.4:+71187583 | None:intergenic |
| AAGAGAGTTTCGAAGATCTT+TGG | 0.330634 | 4.4:+71187621 | None:intergenic |
| CTTGATACTGTTAAAGAAAA+CGG | 0.356290 | 4.4:-71187463 | MS.gene060761:CDS |
| AGTGGTTGTTGAGATAGAAA+TGG | 0.382473 | 4.4:+71190460 | None:intergenic |
| TTGATACTGTTAAAGAAAAC+GGG | 0.383944 | 4.4:-71187462 | MS.gene060761:CDS |
| TGAAAGGATTGAAGGTAGAC+TGG | 0.403984 | 4.4:-71187494 | MS.gene060761:CDS |
| TTTGGGATTGTTGGAGTTTG+GGG | 0.432854 | 4.4:+71190430 | None:intergenic |
| TCGAAGATCTTTGGCGTTTG+TGG | 0.436613 | 4.4:+71187630 | None:intergenic |
| AGAACGTACTTTGGGATTGT+TGG | 0.443819 | 4.4:+71190421 | None:intergenic |
| GTGGTTGTTGAGATAGAAAT+GGG | 0.449297 | 4.4:+71190461 | None:intergenic |
| AGAAACCCAGCAGGAAATCA+TGG | 0.462560 | 4.4:-71187768 | MS.gene060761:CDS |
| GAGATAGAAATGGGTAAAGA+AGG | 0.473587 | 4.4:+71190470 | None:intergenic |
| AGAAAGAATGAAAGGATTGA+AGG | 0.478137 | 4.4:-71187502 | MS.gene060761:CDS |
| GTACATTCATTCGAGCTGCT+TGG | 0.492460 | 4.4:-71187819 | MS.gene060761:CDS |
| TTGGGATTGTTGGAGTTTGG+GGG | 0.510893 | 4.4:+71190431 | None:intergenic |
| CTTGAAAATGAAAGCGAAGT+CGG | 0.521163 | 4.4:+71190500 | None:intergenic |
| TGATAACGAGTTGTGTTGGT+TGG | 0.525995 | 4.4:-71190601 | MS.gene060761:CDS |
| AGCGAAGTCGGAGACGAAGA+AGG | 0.528230 | 4.4:+71190512 | None:intergenic |
| ACAAGCTTCAGGATCTATCA+AGG | 0.541521 | 4.4:+71187594 | None:intergenic |
| GATAACGAGTTGTGTTGGTT+GGG | 0.544905 | 4.4:-71190600 | MS.gene060761:CDS |
| TCTGTTGCGATAATAAGCTT+CGG | 0.552339 | 4.4:-71190550 | MS.gene060761:CDS |
| GCTTCAGGATCTATCAAGGA+TGG | 0.567230 | 4.4:+71187598 | None:intergenic |
| CCAGCAGGAAATCATGGAAG+CGG | 0.573597 | 4.4:-71187762 | MS.gene060761:CDS |
| ATGAACCGAGAAAGAATGAA+AGG | 0.579896 | 4.4:-71187510 | MS.gene060761:CDS |
| GAAAGGATTGAAGGTAGACT+GGG | 0.594965 | 4.4:-71187493 | MS.gene060761:CDS |
| GCTTATTGCAGAGCGATCAA+AGG | 0.597674 | 4.4:-71187557 | MS.gene060761:CDS |
| AAGCTTGTAGAGTAATTGGA+AGG | 0.614586 | 4.4:-71187579 | MS.gene060761:CDS |
| GGAAGCTGATGTATATGCAA+TGG | 0.615199 | 4.4:-71187536 | MS.gene060761:CDS |
| AAGCTGAAAAGAAACCCAGC+AGG | 0.616349 | 4.4:-71187777 | MS.gene060761:CDS |
| GAAATGATAACGAGTTGTGT+TGG | 0.616458 | 4.4:-71190605 | MS.gene060761:CDS |
| GCTTGGACTCGAAGATCTCG+AGG | 0.620097 | 4.4:-71187802 | MS.gene060761:CDS |
| CAGAGCGATGCTGATGCTGA+AGG | 0.646208 | 4.4:+71190569 | None:intergenic |
| CACGCGAAAGTGACACATCG+TGG | 0.651769 | 4.4:-71187679 | MS.gene060761:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTGATATAAAGATTAT+GGG | - | chr4.4:71189243-71189262 | MS.gene060761:intron | 10.0% |
| !! | TAATCAGTTATTATAAATAT+AGG | + | chr4.4:71189092-71189111 | None:intergenic | 10.0% |
| !! | TAATTTAAACTAACTTTATA+TGG | - | chr4.4:71190124-71190143 | MS.gene060761:intron | 10.0% |
| !! | AAGAAAATGTCTAATAAAAA+CGG | + | chr4.4:71190334-71190353 | None:intergenic | 15.0% |
| !! | GATATTTGATATAAAGATTA+TGG | - | chr4.4:71189242-71189261 | MS.gene060761:intron | 15.0% |
| !! | TTTAAACAGAAATAAGTATT+TGG | - | chr4.4:71189313-71189332 | MS.gene060761:intron | 15.0% |
| !!! | AAAATAAATAATTTGCACTT+TGG | - | chr4.4:71189793-71189812 | MS.gene060761:intron | 15.0% |
| !!! | AAGTTTATTTTATCTTATGA+AGG | - | chr4.4:71189414-71189433 | MS.gene060761:intron | 15.0% |
| !!! | TTCAATAATCTAATTTTTCT+TGG | - | chr4.4:71189549-71189568 | MS.gene060761:intron | 15.0% |
| !!! | TTTTTTGCAAAAGAAATAAT+TGG | - | chr4.4:71189162-71189181 | MS.gene060761:intron | 15.0% |
| !! | AACACTTGATATAGATATTA+TGG | - | chr4.4:71189881-71189900 | MS.gene060761:intron | 20.0% |
| !! | AAGTTATTAGTTACAATACT+TGG | - | chr4.4:71189437-71189456 | MS.gene060761:intron | 20.0% |
| !! | AGTTATTAGTTACAATACTT+GGG | - | chr4.4:71189438-71189457 | MS.gene060761:intron | 20.0% |
| !! | TGAAAACAGTACTTATTATT+AGG | + | chr4.4:71189533-71189552 | None:intergenic | 20.0% |
| !!! | AAAATTTGTTTATCCAAACA+GGG | + | chr4.4:71187884-71187903 | None:intergenic | 20.0% |
| !!! | AAATTTTATTTTACAGCTTC+TGG | - | chr4.4:71187897-71187916 | MS.gene060761:intron | 20.0% |
| !!! | AAGCTTAAAAGGTTTTTTTA+TGG | + | chr4.4:71189965-71189984 | None:intergenic | 20.0% |
| !!! | ACATATTGATTTTACTTATG+AGG | - | chr4.4:71190020-71190039 | MS.gene060761:intron | 20.0% |
| !!! | AGTTTGACAATGTTTAATTT+TGG | + | chr4.4:71187956-71187975 | None:intergenic | 20.0% |
| !!! | ATAACTGATTATTTTACCTT+TGG | - | chr4.4:71189101-71189120 | MS.gene060761:intron | 20.0% |
| !!! | CATATTGATTTTACTTATGA+GGG | - | chr4.4:71190021-71190040 | MS.gene060761:intron | 20.0% |
| !!! | TAAAAGGTTTTTTTATGGAT+TGG | + | chr4.4:71189960-71189979 | None:intergenic | 20.0% |
| !!! | TAAAATTTGTTTATCCAAAC+AGG | + | chr4.4:71187885-71187904 | None:intergenic | 20.0% |
| ! | ATAAGAAGTAAGAGAAATTG+AGG | - | chr4.4:71188228-71188247 | MS.gene060761:intron | 25.0% |
| ! | CTAATAGTGTTGTCAAATAT+CGG | - | chr4.4:71188577-71188596 | MS.gene060761:intron | 25.0% |
| ! | CTTGATACTGTTAAAGAAAA+CGG | - | chr4.4:71190586-71190605 | MS.gene060761:CDS | 25.0% |
| ! | GAGTTATGTAATTAAGAATC+TGG | + | chr4.4:71189592-71189611 | None:intergenic | 25.0% |
| ! | TAAGAAGTAAGAGAAATTGA+GGG | - | chr4.4:71188229-71188248 | MS.gene060761:intron | 25.0% |
| ! | TATTATTCATAAGCTTCTCA+AGG | + | chr4.4:71188092-71188111 | None:intergenic | 25.0% |
| ! | TATTGTCCAATGATGTAATT+AGG | + | chr4.4:71188211-71188230 | None:intergenic | 25.0% |
| ! | TGATATAAAGATTATGGGTA+TGG | - | chr4.4:71189248-71189267 | MS.gene060761:intron | 25.0% |
| ! | TTATATCACTTCTCATATGT+AGG | - | chr4.4:71189462-71189481 | MS.gene060761:intron | 25.0% |
| ! | TTGATACTGTTAAAGAAAAC+GGG | - | chr4.4:71190587-71190606 | MS.gene060761:CDS | 25.0% |
| ! | TTGTTTGTATTTATGAGAAC+TGG | - | chr4.4:71189695-71189714 | MS.gene060761:intron | 25.0% |
| !! | AAAAAAACCTTTTAAGCTTG+AGG | - | chr4.4:71189966-71189985 | MS.gene060761:intron | 25.0% |
| !! | AAACATTGTCAAACTGTTTT+AGG | - | chr4.4:71187961-71187980 | MS.gene060761:intron | 25.0% |
| !! | AACATTGTCAAACTGTTTTA+GGG | - | chr4.4:71187962-71187981 | MS.gene060761:intron | 25.0% |
| !! | ATGGTGAAATTTGAACATTT+TGG | - | chr4.4:71189214-71189233 | MS.gene060761:intron | 25.0% |
| !! | GTTTAAAGAAGACAATTTTC+TGG | - | chr4.4:71189375-71189394 | MS.gene060761:intron | 25.0% |
| !! | TTTTACACGAGTACTAATAT+TGG | + | chr4.4:71190102-71190121 | None:intergenic | 25.0% |
| !!! | TCGCTTTTCTAGTTTATTAT+TGG | - | chr4.4:71189762-71189781 | MS.gene060761:intron | 25.0% |
| !!! | TGAGAACTGGTTTTTTTTTT+TGG | - | chr4.4:71189708-71189727 | MS.gene060761:intron | 25.0% |
| AAGCAGGCATTATTTAGTAT+TGG | + | chr4.4:71190159-71190178 | None:intergenic | 30.0% | |
| AATTCAGTTTAACATCTGCA+GGG | - | chr4.4:71190208-71190227 | MS.gene060761:intron | 30.0% | |
| ACAGATCCTAATTACATCAT+TGG | - | chr4.4:71188202-71188221 | MS.gene060761:intron | 30.0% | |
| AGAAAGAATGAAAGGATTGA+AGG | - | chr4.4:71190547-71190566 | MS.gene060761:CDS | 30.0% | |
| AGAAGAAAAATGAAGTCCAA+AGG | + | chr4.4:71189120-71189139 | None:intergenic | 30.0% | |
| AGAAGTTCTTCAACTGAAAT+GGG | - | chr4.4:71189924-71189943 | MS.gene060761:intron | 30.0% | |
| AGCTTATTATTTGCATAAGC+TGG | - | chr4.4:71188118-71188137 | MS.gene060761:intron | 30.0% | |
| ATGAATACATACCAGAATCA+TGG | - | chr4.4:71188843-71188862 | MS.gene060761:intron | 30.0% | |
| ATGAGTATATGGTAGAAATG+TGG | - | chr4.4:71187845-71187864 | MS.gene060761:intron | 30.0% | |
| CATTTGTGACAATATCATGT+GGG | - | chr4.4:71189653-71189672 | MS.gene060761:intron | 30.0% | |
| GTGTTGAAACTATGAGTATA+TGG | - | chr4.4:71187834-71187853 | MS.gene060761:intron | 30.0% | |
| TAAACAACCTCAAGCTTAAA+AGG | + | chr4.4:71189976-71189995 | None:intergenic | 30.0% | |
| TAATTCAGTTTAACATCTGC+AGG | - | chr4.4:71190207-71190226 | MS.gene060761:intron | 30.0% | |
| TAGAAGTTCTTCAACTGAAA+TGG | - | chr4.4:71189923-71189942 | MS.gene060761:intron | 30.0% | |
| TATGAGAACTGGTTAATCTT+TGG | - | chr4.4:71189736-71189755 | MS.gene060761:intron | 30.0% | |
| TCAATCCTTTCATTCTTTCT+CGG | + | chr4.4:71190547-71190566 | None:intergenic | 30.0% | |
| TCCAATTTGAACATACTTCT+AGG | - | chr4.4:71189271-71189290 | MS.gene060761:intron | 30.0% | |
| TGATGTAATTAGGATCTGTT+TGG | + | chr4.4:71188201-71188220 | None:intergenic | 30.0% | |
| TGTTCAAATTTCACCATTCA+TGG | + | chr4.4:71189211-71189230 | None:intergenic | 30.0% | |
| ! | ATTGTCACTCAAATGAGTTT+TGG | + | chr4.4:71188351-71188370 | None:intergenic | 30.0% |
| ! | TGACATTGGTTGTTACTATT+AGG | + | chr4.4:71188879-71188898 | None:intergenic | 30.0% |
| ! | TTGTCACTCAAATGAGTTTT+GGG | + | chr4.4:71188350-71188369 | None:intergenic | 30.0% |
| !! | TTTTGGTTACATATGAGAAC+TGG | - | chr4.4:71189725-71189744 | MS.gene060761:intron | 30.0% |
| !!! | TTGGTCAATTTTTTCTTTCG+TGG | - | chr4.4:71189812-71189831 | MS.gene060761:intron | 30.0% |
| AAAGCCAAAAATCCGACATA+TGG | + | chr4.4:71188689-71188708 | None:intergenic | 35.0% | |
| AAGAGAGTTTCGAAGATCTT+TGG | + | chr4.4:71190431-71190450 | None:intergenic | 35.0% | |
| AAGCTTGTAGAGTAATTGGA+AGG | - | chr4.4:71190470-71190489 | MS.gene060761:CDS | 35.0% | |
| ACAGATACCTGAATGATAAC+AGG | - | chr4.4:71189501-71189520 | MS.gene060761:intron | 35.0% | |
| AGTAAGAGAAATTGAGGGTA+TGG | - | chr4.4:71188234-71188253 | MS.gene060761:intron | 35.0% | |
| AGTGGTTGTTGAGATAGAAA+TGG | + | chr4.4:71187592-71187611 | None:intergenic | 35.0% | |
| AGTGTGTTAGAACGTACTTT+GGG | + | chr4.4:71187639-71187658 | None:intergenic | 35.0% | |
| ATGAACCGAGAAAGAATGAA+AGG | - | chr4.4:71190539-71190558 | MS.gene060761:CDS | 35.0% | |
| ATGCGTCCTATGAAATTATG+CGG | - | chr4.4:71188317-71188336 | MS.gene060761:intron | 35.0% | |
| CACTGAACTTCTGATATTAG+AGG | - | chr4.4:71189185-71189204 | MS.gene060761:intron | 35.0% | |
| CCTATGTAGCATCTTTAACA+AGG | - | chr4.4:71189036-71189055 | MS.gene060761:intron | 35.0% | |
| CCTTGTTAAAGATGCTACAT+AGG | + | chr4.4:71189039-71189058 | None:intergenic | 35.0% | |
| CCTTTCATTAGTCAGTTTGA+GGG | + | chr4.4:71188511-71188530 | None:intergenic | 35.0% | |
| CTTGAAAATGAAAGCGAAGT+CGG | + | chr4.4:71187552-71187571 | None:intergenic | 35.0% | |
| GAGATAGAAATGGGTAAAGA+AGG | + | chr4.4:71187582-71187601 | None:intergenic | 35.0% | |
| GATAGCAGCTCACAAATTTA+AGG | - | chr4.4:71188760-71188779 | MS.gene060761:intron | 35.0% | |
| GCATTTGTGACAATATCATG+TGG | - | chr4.4:71189652-71189671 | MS.gene060761:intron | 35.0% | |
| GTGGTTGTTGAGATAGAAAT+GGG | + | chr4.4:71187591-71187610 | None:intergenic | 35.0% | |
| TAGATATTATGGCGCACTTT+AGG | - | chr4.4:71189892-71189911 | MS.gene060761:intron | 35.0% | |
| TCAATACTCTAACCACACTT+GGG | - | chr4.4:71188896-71188915 | MS.gene060761:intron | 35.0% | |
| TCTGTTGCGATAATAAGCTT+CGG | - | chr4.4:71187499-71187518 | MS.gene060761:CDS | 35.0% | |
| TTTGGATTGTGACACTGTTT+GGG | + | chr4.4:71188183-71188202 | None:intergenic | 35.0% | |
| ! | CTACGAGTAACTACTCATTT+TGG | + | chr4.4:71188787-71188806 | None:intergenic | 35.0% |
| ! | GCCTAGAAGTATGTTCAAAT+TGG | + | chr4.4:71189275-71189294 | None:intergenic | 35.0% |
| ! | GTAAGAGAAATTGAGGGTAT+GGG | - | chr4.4:71188235-71188254 | MS.gene060761:intron | 35.0% |
| ! | TAACTCTGTCTCGTGAATTT+TGG | - | chr4.4:71189606-71189625 | MS.gene060761:intron | 35.0% |
| !! | GATTTTTGGAAAAACTGCCA+TGG | - | chr4.4:71188632-71188651 | MS.gene060761:intron | 35.0% |
| !! | TGTGGTTAGAGTATTGACAT+TGG | + | chr4.4:71188893-71188912 | None:intergenic | 35.0% |
| AAACTCATTGAGACCCTGTT+TGG | - | chr4.4:71187868-71187887 | MS.gene060761:intron | 40.0% | |
| AACAGTCCCTGTCAGAAATT+CGG | + | chr4.4:71189842-71189861 | None:intergenic | 40.0% | |
| ACAAGCTTCAGGATCTATCA+AGG | + | chr4.4:71190458-71190477 | None:intergenic | 40.0% | |
| ACGAGTCCGCATAATTTCAT+AGG | + | chr4.4:71188326-71188345 | None:intergenic | 40.0% | |
| ATACATACCAGAATCATGGC+AGG | - | chr4.4:71188847-71188866 | MS.gene060761:intron | 40.0% | |
| CCAATTACTCTACAAGCTTC+AGG | + | chr4.4:71190469-71190488 | None:intergenic | 40.0% | |
| CCCTCAAACTGACTAATGAA+AGG | - | chr4.4:71188508-71188527 | MS.gene060761:intron | 40.0% | |
| CCTGAAGCTTGTAGAGTAAT+TGG | - | chr4.4:71190466-71190485 | MS.gene060761:CDS | 40.0% | |
| CTGATATTAGAGGCCATGAA+TGG | - | chr4.4:71189195-71189214 | MS.gene060761:intron | 40.0% | |
| GAAAGGATTGAAGGTAGACT+GGG | - | chr4.4:71190556-71190575 | MS.gene060761:CDS | 40.0% | |
| GAGTGTGTTAGAACGTACTT+TGG | + | chr4.4:71187640-71187659 | None:intergenic | 40.0% | |
| GCAACATAAAACACACTGCA+TGG | + | chr4.4:71189634-71189653 | None:intergenic | 40.0% | |
| GCCTTTCATTAGTCAGTTTG+AGG | + | chr4.4:71188512-71188531 | None:intergenic | 40.0% | |
| GGAAGCTGATGTATATGCAA+TGG | - | chr4.4:71190513-71190532 | MS.gene060761:CDS | 40.0% | |
| GTAAATACCTGCCATGATTC+TGG | + | chr4.4:71188857-71188876 | None:intergenic | 40.0% | |
| GTACAGACCTGTTATCATTC+AGG | + | chr4.4:71189511-71189530 | None:intergenic | 40.0% | |
| GTCAATACTCTAACCACACT+TGG | - | chr4.4:71188895-71188914 | MS.gene060761:intron | 40.0% | |
| GTGTTGTCAAATATCGGTCA+TGG | - | chr4.4:71188583-71188602 | MS.gene060761:intron | 40.0% | |
| GTTTGGATTGTGACACTGTT+TGG | + | chr4.4:71188184-71188203 | None:intergenic | 40.0% | |
| TGAAAGGATTGAAGGTAGAC+TGG | - | chr4.4:71190555-71190574 | MS.gene060761:CDS | 40.0% | |
| TTGTCAAATATCGGTCATGG+TGG | - | chr4.4:71188586-71188605 | MS.gene060761:intron | 40.0% | |
| TTTCTGACAGGGACTGTTAA+TGG | - | chr4.4:71189844-71189863 | MS.gene060761:intron | 40.0% | |
| TTTGGGAGAACTCATGACAT+GGG | + | chr4.4:71188166-71188185 | None:intergenic | 40.0% | |
| ! | GGATATCTGTGGCAGATTTT+TGG | - | chr4.4:71188618-71188637 | MS.gene060761:intron | 40.0% |
| ! | TGATAACGAGTTGTGTTGGT+TGG | - | chr4.4:71187448-71187467 | MS.gene060761:CDS | 40.0% |
| ! | TTTGGGATTGTTGGAGTTTG+GGG | + | chr4.4:71187622-71187641 | None:intergenic | 40.0% |
| !! | ACTTTGGGATTGTTGGAGTT+TGG | + | chr4.4:71187624-71187643 | None:intergenic | 40.0% |
| !! | AGAACGTACTTTGGGATTGT+TGG | + | chr4.4:71187631-71187650 | None:intergenic | 40.0% |
| !! | CTTTGGGATTGTTGGAGTTT+GGG | + | chr4.4:71187623-71187642 | None:intergenic | 40.0% |
| !! | GATAACGAGTTGTGTTGGTT+GGG | - | chr4.4:71187449-71187468 | MS.gene060761:CDS | 40.0% |
| AAGCTGAAAAGAAACCCAGC+AGG | - | chr4.4:71190272-71190291 | MS.gene060761:intron | 45.0% | |
| AGAAACCCAGCAGGAAATCA+TGG | - | chr4.4:71190281-71190300 | MS.gene060761:intron | 45.0% | |
| CACATTAGCACAAGTGAAGC+AGG | + | chr4.4:71190175-71190194 | None:intergenic | 45.0% | |
| CATCCTTCACAAATTGGCCA+TGG | + | chr4.4:71188652-71188671 | None:intergenic | 45.0% | |
| CATGGCCAATTTGTGAAGGA+TGG | - | chr4.4:71188650-71188669 | MS.gene060761:intron | 45.0% | |
| CGATGACAAATTGCAGACCA+TGG | + | chr4.4:71188715-71188734 | None:intergenic | 45.0% | |
| CTTGTGTGTTCAATTCTCCC+CGG | - | chr4.4:71188924-71188943 | MS.gene060761:intron | 45.0% | |
| GCCAAATTGCCCACCAAAAT+TGG | + | chr4.4:71188952-71188971 | None:intergenic | 45.0% | |
| GCTTATTGCAGAGCGATCAA+AGG | - | chr4.4:71190492-71190511 | MS.gene060761:CDS | 45.0% | |
| GCTTCAGGATCTATCAAGGA+TGG | + | chr4.4:71190454-71190473 | None:intergenic | 45.0% | |
| GTACATTCATTCGAGCTGCT+TGG | - | chr4.4:71190230-71190249 | MS.gene060761:intron | 45.0% | |
| GTTTGGGAGAACTCATGACA+TGG | + | chr4.4:71188167-71188186 | None:intergenic | 45.0% | |
| TACTCTAACCACACTTGGGT+TGG | - | chr4.4:71188900-71188919 | MS.gene060761:intron | 45.0% | |
| TCGAAGATCTTTGGCGTTTG+TGG | + | chr4.4:71190422-71190441 | None:intergenic | 45.0% | |
| TGACAAATTGCAGACCATGG+TGG | + | chr4.4:71188712-71188731 | None:intergenic | 45.0% | |
| TTGGGAGAACTCATGACATG+GGG | + | chr4.4:71188165-71188184 | None:intergenic | 45.0% | |
| TTGGGATTGTTGGAGTTTGG+GGG | + | chr4.4:71187621-71187640 | None:intergenic | 45.0% | |
| !! | GCCAATTTTGGTGGGCAATT+TGG | - | chr4.4:71188948-71188967 | MS.gene060761:intron | 45.0% |
| !! | GGTGCCATATGTCGGATTTT+TGG | - | chr4.4:71188682-71188701 | MS.gene060761:intron | 45.0% |
| !!! | GGATTTTTGGCTTTCCACCA+TGG | - | chr4.4:71188695-71188714 | MS.gene060761:intron | 45.0% |
| !! | ATAATAATAATGAATAATTA+AGG | + | chr4.4:71187703-71187722 | None:intergenic | 5.0% |
| ACTCATGACATGGGGCTGTT+TGG | + | chr4.4:71188157-71188176 | None:intergenic | 50.0% | |
| CCAGCAGGAAATCATGGAAG+CGG | - | chr4.4:71190287-71190306 | MS.gene060761:intron | 50.0% | |
| CGCTGCCATCCTTCACAAAT+TGG | + | chr4.4:71188658-71188677 | None:intergenic | 50.0% | |
| CGCTTCCATGATTTCCTGCT+GGG | + | chr4.4:71190289-71190308 | None:intergenic | 50.0% | |
| CGGGGAGAATTGAACACACA+AGG | + | chr4.4:71188926-71188945 | None:intergenic | 50.0% | |
| CTGCCATGGCCAATTTGTGA+AGG | - | chr4.4:71188646-71188665 | MS.gene060761:intron | 50.0% | |
| GGCGATCCGAATTTCTGACA+GGG | - | chr4.4:71189833-71189852 | MS.gene060761:intron | 50.0% | |
| TGGCGATCCGAATTTCTGAC+AGG | - | chr4.4:71189832-71189851 | MS.gene060761:intron | 50.0% | |
| TTGCCCACCAAAATTGGCAC+CGG | + | chr4.4:71188946-71188965 | None:intergenic | 50.0% | |
| !! | ATTCTCCCCGGTGCCAATTT+TGG | - | chr4.4:71188936-71188955 | MS.gene060761:intron | 50.0% |
| ACACAAGGCCAACCCAAGTG+TGG | + | chr4.4:71188911-71188930 | None:intergenic | 55.0% | |
| AGCGAAGTCGGAGACGAAGA+AGG | + | chr4.4:71187540-71187559 | None:intergenic | 55.0% | |
| CACGCGAAAGTGACACATCG+TGG | - | chr4.4:71190370-71190389 | MS.gene060761:intron | 55.0% | |
| CAGAGCGATGCTGATGCTGA+AGG | + | chr4.4:71187483-71187502 | None:intergenic | 55.0% | |
| CCGCTTCCATGATTTCCTGC+TGG | + | chr4.4:71190290-71190309 | None:intergenic | 55.0% | |
| GCTTGGACTCGAAGATCTCG+AGG | - | chr4.4:71190247-71190266 | MS.gene060761:intron | 55.0% | |
| TGCCCACCAAAATTGGCACC+GGG | + | chr4.4:71188945-71188964 | None:intergenic | 55.0% | |
| ! | TATCGGTCATGGTGGCGCTA+TGG | - | chr4.4:71188594-71188613 | MS.gene060761:intron | 55.0% |
| !! | TCCCCGGTGCCAATTTTGGT+GGG | - | chr4.4:71188940-71188959 | MS.gene060761:intron | 55.0% |
| GCCCACCAAAATTGGCACCG+GGG | + | chr4.4:71188944-71188963 | None:intergenic | 60.0% | |
| GGAGTTTGGGGGAGAGAGAG+TGG | + | chr4.4:71187610-71187629 | None:intergenic | 60.0% | |
| TGTGAAGGATGGCAGCGCTG+CGG | - | chr4.4:71188661-71188680 | MS.gene060761:intron | 60.0% | |
| !! | AGCGCTGCGGTGCCATATGT+CGG | - | chr4.4:71188674-71188693 | MS.gene060761:intron | 60.0% |
| !! | CTCCCCGGTGCCAATTTTGG+TGG | - | chr4.4:71188939-71188958 | MS.gene060761:intron | 60.0% |
| !! | GGCGCTATGGCGGATATCTG+TGG | - | chr4.4:71188607-71188626 | MS.gene060761:intron | 60.0% |
| ! | CGGTCATGGTGGCGCTATGG+CGG | - | chr4.4:71188597-71188616 | MS.gene060761:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 71187447 | 71190624 | 71187447 | ID=MS.gene060761 |
| chr4.4 | mRNA | 71187447 | 71190624 | 71187447 | ID=MS.gene060761.t1;Parent=MS.gene060761 |
| chr4.4 | exon | 71190430 | 71190624 | 71190430 | ID=MS.gene060761.t1.exon1;Parent=MS.gene060761.t1 |
| chr4.4 | CDS | 71190430 | 71190624 | 71190430 | ID=cds.MS.gene060761.t1;Parent=MS.gene060761.t1 |
| chr4.4 | exon | 71187447 | 71187842 | 71187447 | ID=MS.gene060761.t1.exon2;Parent=MS.gene060761.t1 |
| chr4.4 | CDS | 71187447 | 71187842 | 71187447 | ID=cds.MS.gene060761.t1;Parent=MS.gene060761.t1 |
| Gene Sequence |
| Protein sequence |
