AlfalfaGEDB | MS.gene75231

M. sativa cultivar XinJiangDaYe / MS.gene75231

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75231.t1	XP_003613903.1	97.1	137	3	1	1	137	1	136	2.80E-69	271.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75231.t1	Q9FG89	59.8	92	37	0	46	137	45	136	1.5e-26	120.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75231.t1	G7JWI9	97.1	137	3	1	1	137	1	136	2.0e-69	271.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene75231	0.834029	3.80E-56	-1.69E-46
MS.gene049171	MS.gene75231	0.936619	1.30E-97	-1.69E-46
MS.gene049173	MS.gene75231	0.868746	5.19E-66	-1.69E-46
MS.gene049217	MS.gene75231	0.893134	8.34E-75	-1.69E-46
MS.gene049222	MS.gene75231	0.945519	2.62E-104	-1.69E-46
MS.gene049232	MS.gene75231	0.889734	1.86E-73	-1.69E-46
MS.gene049281	MS.gene75231	-0.813327	2.71E-51	-1.69E-46
MS.gene049285	MS.gene75231	0.953243	4.21E-111	-1.69E-46
MS.gene049320	MS.gene75231	0.943116	2.15E-102	-1.69E-46
MS.gene04939	MS.gene75231	0.840721	7.33E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75231.t1	MTR_5g042420	97.080	137	3	1	1	137	1	136	1.01e-92	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75231.t1	AT5G43750	48.413	126	63	1	12	137	13	136	2.42e-35	122

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Find 36 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATACCTTGAAATCCAG+TGG	0.629247	1.4:+25307760	None:intergenic
AACATACCTTGAAATCCAGT+GGG	0.550957	1.4:+25307761	None:intergenic
AATACCCCAGCAGCAATGGC+TGG	0.556419	1.4:+25307332	None:intergenic
AATATGCCATGAAAGTTGAG+TGG	0.727294	1.4:+25308728	None:intergenic
AATGAAGGAGAAGAAAAGAA+AGG	0.531960	1.4:-25308443	MS.gene75231:intron
ACAAAATTCTTGTTGAATGC+TGG	0.374097	1.4:-25308680	MS.gene75231:CDS
ACAGGATCTTCATTAAGGTC+AGG	0.545810	1.4:+25308641	None:intergenic
ACATACCTTGAAATCCAGTG+GGG	0.718019	1.4:+25307762	None:intergenic
ACCCCAGCAGCAATGGCTGG+TGG	0.569943	1.4:+25307335	None:intergenic
AGGAGGGACAAGTGAGAGTG+AGG	0.582918	1.4:+25308799	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGATTACCTACAAAGG+AGG	-	chr1.4:25308192-25308211	MS.gene75231:intron	30.0%
AATGAAGGAGAAGAAAAGAA+AGG	-	chr1.4:25307667-25307686	MS.gene75231:intron	30.0%
ACAAAATTCTTGTTGAATGC+TGG	-	chr1.4:25307430-25307449	MS.gene75231:intron	30.0%
AGGAATAAGATTACCTACAA+AGG	-	chr1.4:25308189-25308208	MS.gene75231:intron	30.0%
ATAAGATTACCTACAAAGGA+GGG	-	chr1.4:25308193-25308212	MS.gene75231:intron	30.0%
CTTGCAACAGTAAAATTTGA+TGG	-	chr1.4:25308040-25308059	MS.gene75231:intron	30.0%
TATAAATAAAGGGGAAACAG+GGG	+	chr1.4:25307983-25308002	None:intergenic	30.0%
TCTAATTTGATTCTCATGCA+GGG	-	chr1.4:25308734-25308753	MS.gene75231:CDS	30.0%
TGTTGAGTTATTGTTACTCT+TGG	+	chr1.4:25307413-25307432	None:intergenic	30.0%
TTCTAATTTGATTCTCATGC+AGG	-	chr1.4:25308733-25308752	MS.gene75231:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	25307298	25308834	25307298	ID=MS.gene75231
chr1.4	mRNA	25307298	25308834	25307298	ID=MS.gene75231.t1;Parent=MS.gene75231
chr1.4	exon	25308610	25308834	25308610	ID=MS.gene75231.t1.exon1;Parent=MS.gene75231.t1
chr1.4	CDS	25308610	25308834	25308610	ID=cds.MS.gene75231.t1;Parent=MS.gene75231.t1
chr1.4	exon	25308444	25308507	25308444	ID=MS.gene75231.t1.exon2;Parent=MS.gene75231.t1
chr1.4	CDS	25308444	25308507	25308444	ID=cds.MS.gene75231.t1;Parent=MS.gene75231.t1
chr1.4	exon	25307768	25307830	25307768	ID=MS.gene75231.t1.exon3;Parent=MS.gene75231.t1
chr1.4	CDS	25307768	25307830	25307768	ID=cds.MS.gene75231.t1;Parent=MS.gene75231.t1
chr1.4	exon	25307298	25307377	25307298	ID=MS.gene75231.t1.exon4;Parent=MS.gene75231.t1
chr1.4	CDS	25307298	25307377	25307298	ID=cds.MS.gene75231.t1;Parent=MS.gene75231.t1

Gene Sequence

>MS.gene75231

ATGGCGCTATGTTCCTCACTCTCACTTGTCCCTCCTATCATCACTCCATCCAAACTCACTTCAAAATCCTTCTCATCTCCAACACCACTCAACTTTCATGGCATATTCACTACCAAGAGTAACAATAACTCAACAAAATTCTTGTTGAATGCTGGTTTCAATCTTATTGAGCCTGACCTTAATGAAGATCCTGTTGACCAATTTCGCACTAATGGCATTCCACCTGTATTTTTTTTTCATATTTATACTTCATTTTGTTTAATTACTTTTTTTTACTATAGTTTTGTTTTTGTGATGAGATTTGTTTGTTTTGTGTTGATTATATAGGAAGAATTTGAGTATGGAATATTTGATGGTCATCATACTTTCAATGAAGGAGAAGAAAAGAAAGGTATTTGTTTTTTCATTGCTTACTTTCTTAGTTTTACAGTATCTTTTCATTTTTCAATCACTTTGTTTTTTAATGGAAATTGGAGCATGTTGGTACTCATGGTAATTGAGATATTTTTATTTTGAAAAACTGGAGTATAAGGAAATTGTTATTAATTAAAGAGACAATTTTCATTGTATTGTCGAAGGATTTGAACTCGATGTCTTATGTTACCATTTCAAACTCTTGCCATTGCCATTGTTGTCACACCTCATGGACAAACAAACGAGATATTAAGAGAGTGATGGATTTCCCCTGTTTCCCCTTTATTTATATTTTAATTTTTAAGGAATTATTACTAGGTGTTTGTTTCTTGCAACAGTAAAATTTGATGGGAATTATTCAAATTCATAATGTTAGAATGATTAGGAAAAGAAAAATGCACCTACCAACAGGGTTGAATCGAACGAAAGGGGTTAGACTTCTGCAAGATGATCAACAAAAGTTTGAATTTCGATTGAAGGAATAAGATTACCTACAAAGGAGGGAATCTATGAGGACAAAAATGATCCTGATTCCTGACTAAGTCTGTATCTGTTTTCCTAACAAAGTTCATGATGGATGTTAATTTCAGGAACATTTTGGGGTGCAATTATGGATGATGTAATAGCAGTAGGACCCCCCACTGGATTTCAAGGTATGTTTTACTTGCACCAATATATATAATTTTCTAACTTGTATTACAAGCATGTTTTTAAAAACTTGACGGGTGATTGAGCCCGTAAAACCTCCAAATTGTGGTTCAGTTAGCTCAAACGGTTGATCTGAATGACTAATGAATAAATAAGTCGTGGTTGTGTTGCAATTGCGGAGTTTTATAAACAGAAATGTTTGCGACCTTGATCACAATATCAGCGATATCGAAGTATTTTTGTCTCCACAACTGCACTGCAACCGAGATTGAGGCAGTATCGACCACAAAAATCAGCAACATGAAAGCTTGCCACTTGAGCCGGCCCTTGACCACAATTTTGACTGTAATCATTGATTTCGATTATTGTTTAATTCTAATTTGATTCTCATGCAGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTGCTGGGGTATTCTTCGATGTTCCGGTAATTCTAAATGTTAATTGA

Protein sequence

>MS.gene75231.t1

MALCSSLSLVPPIITPSKLTSKSFSSPTPLNFHGIFTTKSNNNSTKFLLNAGFNLIEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKKGTFWGAIMDDVIAVGPPTGFQGLISWLFPPAIAAGVFFDVPVILNVN