Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54080.t1 | XP_013465742.1 | 97.4 | 232 | 6 | 0 | 2 | 233 | 3 | 234 | 2.10E-122 | 448.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54080.t1 | Q941D3 | 61.4 | 236 | 85 | 2 | 3 | 232 | 2 | 237 | 1.5e-76 | 287.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54080.t1 | A0A072VE99 | 97.4 | 232 | 6 | 0 | 2 | 233 | 3 | 234 | 1.5e-122 | 448.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene54080 | 0.841249 | 5.33E-58 | -1.69E-46 |
| MS.gene049171 | MS.gene54080 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene049173 | MS.gene54080 | 0.839972 | 1.15E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene54080 | 0.827528 | 1.49E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene54080 | 0.829346 | 5.42E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene54080 | 0.806554 | 7.78E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene54080 | 0.821053 | 4.95E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene54080 | 0.80026 | 1.57E-48 | -1.69E-46 |
| MS.gene049356 | MS.gene54080 | 0.817496 | 3.20E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene54080 | 0.817107 | 3.92E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene54080 | 0.813982 | 1.94E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene54080 | 0.850032 | 2.21E-60 | -1.69E-46 |
| MS.gene049661 | MS.gene54080 | 0.838908 | 2.17E-57 | -1.69E-46 |
| MS.gene049662 | MS.gene54080 | 0.822657 | 2.11E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene54080 | 0.843532 | 1.32E-58 | -1.69E-46 |
| MS.gene050076 | MS.gene54080 | 0.814039 | 1.89E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene54080 | 0.822408 | 2.41E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene54080 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene54080 | 0.807857 | 4.12E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene54080 | 0.838407 | 2.93E-57 | -1.69E-46 |
| MS.gene050538 | MS.gene54080 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene54080 | 0.821481 | 3.95E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene54080 | 0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene54080 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene54080 | 0.821731 | 3.45E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene54080 | 0.823001 | 1.75E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene54080 | 0.843913 | 1.05E-58 | -1.69E-46 |
| MS.gene05100 | MS.gene54080 | 0.835135 | 2.00E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene54080 | 0.803012 | 4.27E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene54080 | 0.857716 | 1.35E-62 | -1.69E-46 |
| MS.gene051228 | MS.gene54080 | 0.826424 | 2.73E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene54080 | 0.880369 | 5.81E-70 | -1.69E-46 |
| MS.gene051692 | MS.gene54080 | 0.875218 | 3.66E-68 | -1.69E-46 |
| MS.gene051810 | MS.gene54080 | 0.833658 | 4.70E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene54080 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene051858 | MS.gene54080 | 0.8576 | 1.46E-62 | -1.69E-46 |
| MS.gene051949 | MS.gene54080 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene54080 | 0.82066 | 6.10E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene54080 | 0.820213 | 7.73E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene54080 | 0.805822 | 1.11E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene54080 | 0.807297 | 5.42E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene54080 | 0.820764 | 5.77E-53 | -1.69E-46 |
| MS.gene052290 | MS.gene54080 | 0.819932 | 8.96E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene54080 | 0.813813 | 2.12E-51 | -1.69E-46 |
| MS.gene052322 | MS.gene54080 | 0.834602 | 2.73E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene54080 | 0.804846 | 1.78E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene54080 | 0.804112 | 2.53E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene54080 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene54080 | 0.849157 | 3.87E-60 | -1.69E-46 |
| MS.gene052484 | MS.gene54080 | 0.844956 | 5.48E-59 | -1.69E-46 |
| MS.gene052485 | MS.gene54080 | 0.829338 | 5.44E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene54080 | 0.808273 | 3.36E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene54080 | 0.835462 | 1.65E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene54080 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene54080 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene54080 | 0.839048 | 2.00E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene54080 | 0.838459 | 2.84E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene54080 | 0.84781 | 9.14E-60 | -1.69E-46 |
| MS.gene053209 | MS.gene54080 | 0.835289 | 1.83E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene54080 | 0.83149 | 1.62E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene54080 | 0.823267 | 1.52E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene54080 | 0.850548 | 1.58E-60 | -1.69E-46 |
| MS.gene053449 | MS.gene54080 | 0.814962 | 1.18E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene54080 | 0.804723 | 1.88E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene54080 | 0.873233 | 1.72E-67 | -1.69E-46 |
| MS.gene053916 | MS.gene54080 | 0.834959 | 2.22E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene54080 | 0.806034 | 1.00E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene54080 | 0.848796 | 4.88E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene54080 | 0.834916 | 2.27E-56 | -1.69E-46 |
| MS.gene054802 | MS.gene54080 | 0.805802 | 1.12E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene54080 | 0.8013 | 9.61E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene54080 | 0.8073 | 5.41E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene54080 | 0.807684 | 4.48E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene54080 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene54080 | 0.83348 | 5.21E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene54080 | 0.830059 | 3.63E-55 | -1.69E-46 |
| MS.gene055206 | MS.gene54080 | 0.84203 | 3.32E-58 | -1.69E-46 |
| MS.gene055212 | MS.gene54080 | 0.800675 | 1.29E-48 | -1.69E-46 |
| MS.gene055254 | MS.gene54080 | 0.818889 | 1.55E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene54080 | 0.824861 | 6.42E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene54080 | 0.830483 | 2.86E-55 | -1.69E-46 |
| MS.gene055397 | MS.gene54080 | 0.834807 | 2.42E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene54080 | 0.84305 | 1.78E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene54080 | 0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene54080 | 0.833907 | 4.07E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene54080 | 0.863225 | 2.90E-64 | -1.69E-46 |
| MS.gene05592 | MS.gene54080 | 0.826018 | 3.41E-54 | -1.69E-46 |
| MS.gene055941 | MS.gene54080 | 0.829668 | 4.52E-55 | -1.69E-46 |
| MS.gene05602 | MS.gene54080 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene54080 | 0.81243 | 4.26E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene54080 | 0.816463 | 5.46E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene54080 | 0.847354 | 1.22E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene54080 | 0.811586 | 6.50E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene54080 | 0.840058 | 1.09E-57 | -1.69E-46 |
| MS.gene05664 | MS.gene54080 | 0.821227 | 4.52E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene54080 | 0.816472 | 5.43E-52 | -1.69E-46 |
| MS.gene05666 | MS.gene54080 | 0.811847 | 5.71E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene54080 | 0.807204 | 5.67E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene54080 | 0.824558 | 7.56E-54 | -1.69E-46 |
| MS.gene057048 | MS.gene54080 | 0.821678 | 3.55E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene54080 | 0.813606 | 2.35E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene54080 | 0.824059 | 9.91E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene54080 | 0.858932 | 5.87E-63 | -1.69E-46 |
| MS.gene057146 | MS.gene54080 | 0.807109 | 5.94E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene54080 | 0.815058 | 1.12E-51 | -1.69E-46 |
| MS.gene057295 | MS.gene54080 | 0.852164 | 5.53E-61 | -1.69E-46 |
| MS.gene057331 | MS.gene54080 | 0.808104 | 3.65E-50 | -1.69E-46 |
| MS.gene05733 | MS.gene54080 | 0.803077 | 4.14E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene54080 | 0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene54080 | 0.820124 | 8.09E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene54080 | 0.811188 | 7.93E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene54080 | 0.817593 | 3.04E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene54080 | 0.822551 | 2.23E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene54080 | 0.832873 | 7.37E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene54080 | 0.805022 | 1.63E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene54080 | 0.832888 | 7.31E-56 | -1.69E-46 |
| MS.gene058006 | MS.gene54080 | 0.858161 | 9.96E-63 | -1.69E-46 |
| MS.gene058019 | MS.gene54080 | 0.837129 | 6.24E-57 | -1.69E-46 |
| MS.gene058082 | MS.gene54080 | 0.817945 | 2.53E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene54080 | 0.833852 | 4.20E-56 | -1.69E-46 |
| MS.gene058365 | MS.gene54080 | 0.804884 | 1.74E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene54080 | 0.805866 | 1.09E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene54080 | 0.833698 | 4.59E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene54080 | 0.840977 | 6.28E-58 | -1.69E-46 |
| MS.gene058723 | MS.gene54080 | 0.871998 | 4.46E-67 | -1.69E-46 |
| MS.gene058748 | MS.gene54080 | 0.829029 | 6.47E-55 | -1.69E-46 |
| MS.gene058787 | MS.gene54080 | 0.82506 | 5.76E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene54080 | 0.844683 | 6.50E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene54080 | 0.816512 | 5.32E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene54080 | 0.807657 | 4.54E-50 | -1.69E-46 |
| MS.gene058993 | MS.gene54080 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene54080 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene54080 | 0.810701 | 1.01E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene54080 | 0.815847 | 7.50E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene54080 | 0.84023 | 9.85E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene54080 | 0.800413 | 1.46E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene54080 | 0.817046 | 4.04E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene54080 | 0.832052 | 1.18E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene54080 | 0.840622 | 7.78E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene54080 | 0.844674 | 6.53E-59 | -1.69E-46 |
| MS.gene059718 | MS.gene54080 | 0.844269 | 8.40E-59 | -1.69E-46 |
| MS.gene059902 | MS.gene54080 | 0.850001 | 2.25E-60 | -1.69E-46 |
| MS.gene059960 | MS.gene54080 | 0.834239 | 3.36E-56 | -1.69E-46 |
| MS.gene060193 | MS.gene54080 | 0.824077 | 9.82E-54 | -1.69E-46 |
| MS.gene060341 | MS.gene54080 | 0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene54080 | 0.823887 | 1.09E-53 | -1.69E-46 |
| MS.gene060761 | MS.gene54080 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene54080 | 0.818069 | 2.38E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene54080 | 0.857414 | 1.66E-62 | -1.69E-46 |
| MS.gene060818 | MS.gene54080 | 0.815574 | 8.62E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene54080 | 0.820408 | 6.97E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene54080 | 0.81942 | 1.17E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene54080 | 0.817511 | 3.17E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene54080 | 0.855664 | 5.42E-62 | -1.69E-46 |
| MS.gene061150 | MS.gene54080 | 0.818605 | 1.80E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene54080 | 0.847045 | 1.48E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54080.t1 | MTR_1g009980 | 97.414 | 232 | 6 | 0 | 2 | 233 | 3 | 234 | 1.67e-168 | 464 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54080.t1 | AT5G19940 | 62.025 | 237 | 82 | 3 | 3 | 232 | 2 | 237 | 4.78e-103 | 298 |
| MS.gene54080.t1 | AT5G19940 | 60.090 | 223 | 81 | 3 | 3 | 218 | 2 | 223 | 1.27e-92 | 272 |
Find 45 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAATGCCCTTTAATATT+TGG | 0.156574 | 1.2:-10187253 | MS.gene54080:CDS |
| TTGGAAAGTTATTATTATTA+TGG | 0.188383 | 1.2:+10189619 | None:intergenic |
| GATTCACCTCCAAATATTAA+AGG | 0.263064 | 1.2:+10187244 | None:intergenic |
| CATGATCCTAACTTCAATTC+AGG | 0.271381 | 1.2:+10185293 | None:intergenic |
| GATGGAGAGGTTTCTCTAAA+AGG | 0.274120 | 1.2:-10186160 | MS.gene54080:intron |
| AAAATCGCATTTACTGCTTT+AGG | 0.285729 | 1.2:-10186190 | MS.gene54080:CDS |
| GAAACGGATGTTAAATGATT+TGG | 0.301672 | 1.2:+10189593 | None:intergenic |
| CAAAACAAAGGAAATGGTTC+AGG | 0.305881 | 1.2:-10186242 | MS.gene54080:CDS |
| GAAGCGCCTGAATTGAAGTT+AGG | 0.366884 | 1.2:-10185299 | MS.gene54080:CDS |
| AGAGGTGGCTGAAGTAGTTC+AGG | 0.402001 | 1.2:-10187305 | MS.gene54080:CDS |
| GGTGGGTATCGGAGTGCATT+GGG | 0.413827 | 1.2:-10186277 | MS.gene54080:CDS |
| TTTCATCTACATAAGTGATT+CGG | 0.422972 | 1.2:+10185234 | None:intergenic |
| ATGTTAAATGATTTGGATGT+TGG | 0.431771 | 1.2:+10189600 | None:intergenic |
| GGATCATGGAAAGGACAATA+TGG | 0.440706 | 1.2:-10185278 | MS.gene54080:CDS |
| AGAGAAGCTACGAGATCGTT+AGG | 0.445678 | 1.2:+10189501 | None:intergenic |
| CGTAGCTTCTCTTCTTTCAA+AGG | 0.466795 | 1.2:-10189490 | MS.gene54080:intron |
| ATTCACCTCCAAATATTAAA+GGG | 0.468719 | 1.2:+10187245 | None:intergenic |
| AGGTGGGTATCGGAGTGCAT+TGG | 0.479445 | 1.2:-10186278 | MS.gene54080:CDS |
| AATATTAAAGGGCATTTCAC+CGG | 0.488802 | 1.2:+10187256 | None:intergenic |
| CAGCCAACATCCCCTGGAGG+TGG | 0.497585 | 1.2:-10186295 | MS.gene54080:CDS |
| TCTAACACGGATGTCCGAAC+AGG | 0.503886 | 1.2:-10189525 | MS.gene54080:CDS |
| CATCCCCTGGAGGTGGGTAT+CGG | 0.509376 | 1.2:-10186288 | MS.gene54080:CDS |
| AAATGCCCTTTAATATTTGG+AGG | 0.511861 | 1.2:-10187250 | MS.gene54080:intron |
| TGTTCACAGCCAACATCCCC+TGG | 0.520663 | 1.2:-10186301 | MS.gene54080:CDS |
| AATCAGGTGGTGCAAACAGA+TGG | 0.526942 | 1.2:-10187358 | MS.gene54080:intron |
| TCAAAGCTCTAGATACTGAA+TGG | 0.532008 | 1.2:-10185337 | MS.gene54080:CDS |
| GCACTCCGATACCCACCTCC+AGG | 0.533764 | 1.2:+10186283 | None:intergenic |
| CTGAATTGAAGTTAGGATCA+TGG | 0.550366 | 1.2:-10185292 | MS.gene54080:CDS |
| TACCCACCTCCAGGGGATGT+TGG | 0.554072 | 1.2:+10186292 | None:intergenic |
| ATCCGTGTTAGATACAGAAA+CGG | 0.567178 | 1.2:+10189536 | None:intergenic |
| CACTCCGATACCCACCTCCA+GGG | 0.587739 | 1.2:+10186284 | None:intergenic |
| CGAGATCGTTAGGACCTGTT+CGG | 0.590020 | 1.2:+10189511 | None:intergenic |
| GTTAGATACAGAAACGGAAG+CGG | 0.602486 | 1.2:+10189542 | None:intergenic |
| TTCCGTTTCTGTATCTAACA+CGG | 0.609458 | 1.2:-10189538 | MS.gene54080:CDS |
| AGGTTAGGATTGGGATCCAG+AGG | 0.617399 | 1.2:-10185206 | MS.gene54080:CDS |
| AGCCAACATCCCCTGGAGGT+GGG | 0.619542 | 1.2:-10186294 | MS.gene54080:CDS |
| TTGCTTTCCAGAGTGGGATG+TGG | 0.621177 | 1.2:-10186329 | MS.gene54080:intron |
| CAGGTGGTGCAAACAGATGG+AGG | 0.622209 | 1.2:-10187355 | MS.gene54080:CDS |
| GAAGTATTGTGTGAAAGAGC+CGG | 0.642144 | 1.2:-10187275 | MS.gene54080:CDS |
| TTGAAGTTAGGATCATGGAA+AGG | 0.658607 | 1.2:-10185287 | MS.gene54080:CDS |
| AAAGGAAGAACACAAAGAGG+TGG | 0.660750 | 1.2:-10187320 | MS.gene54080:CDS |
| GCAAAAGGAAGAACACAAAG+AGG | 0.672287 | 1.2:-10187323 | MS.gene54080:CDS |
| ACTCCGATACCCACCTCCAG+GGG | 0.688603 | 1.2:+10186285 | None:intergenic |
| TCATGGAAAGGACAATATGG+AGG | 0.694503 | 1.2:-10185275 | MS.gene54080:CDS |
| TCACAGCCAACATCCCCTGG+AGG | 0.744676 | 1.2:-10186298 | MS.gene54080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAAAATAAAAAA+AGG | + | chr1.2:10189346-10189365 | None:intergenic | 0.0% |
| !! | AAATATTAAATGTAATGAAA+TGG | + | chr1.2:10187416-10187435 | None:intergenic | 10.0% |
| !! | TAATTTCTTTACAATTAAAA+AGG | - | chr1.2:10188180-10188199 | MS.gene54080:intron | 10.0% |
| !!! | ACTGTTTTTTAAATTATTTT+GGG | - | chr1.2:10188430-10188449 | MS.gene54080:intron | 10.0% |
| !!! | ATATTAACTAATTTTCTTAA+GGG | + | chr1.2:10186005-10186024 | None:intergenic | 10.0% |
| !!! | GATTTTAAGTATTTAATTAT+AGG | - | chr1.2:10189245-10189264 | MS.gene54080:intron | 10.0% |
| !!! | TACTGTTTTTTAAATTATTT+TGG | - | chr1.2:10188429-10188448 | MS.gene54080:intron | 10.0% |
| !!! | TTTTTATTTTACTTTACTAT+TGG | - | chr1.2:10186146-10186165 | MS.gene54080:intron | 10.0% |
| !! | AAGGAAATTATTACATTAAA+AGG | + | chr1.2:10185939-10185958 | None:intergenic | 15.0% |
| !! | TTGGAAAGTTATTATTATTA+TGG | + | chr1.2:10185240-10185259 | None:intergenic | 15.0% |
| !!! | AAATAAAGATTTAAAAGTAC+AGG | + | chr1.2:10187450-10187469 | None:intergenic | 15.0% |
| !!! | AAATATTACCTTTTATTTGT+TGG | - | chr1.2:10188039-10188058 | MS.gene54080:intron | 15.0% |
| !!! | AATGTAATAATTTCCTTTTT+TGG | - | chr1.2:10185942-10185961 | MS.gene54080:intron | 15.0% |
| !!! | ATGTTTTAGAAAAATAATTG+GGG | - | chr1.2:10186857-10186876 | MS.gene54080:intron | 15.0% |
| !!! | ATTTCTGTTTTTTTTAATCA+AGG | - | chr1.2:10188864-10188883 | MS.gene54080:intron | 15.0% |
| !!! | CATATTAACTAATTTTCTTA+AGG | + | chr1.2:10186006-10186025 | None:intergenic | 15.0% |
| !!! | CTGTTTTTTAAATTATTTTG+GGG | - | chr1.2:10188431-10188450 | MS.gene54080:intron | 15.0% |
| !!! | GATGTTTTAGAAAAATAATT+GGG | - | chr1.2:10186856-10186875 | MS.gene54080:intron | 15.0% |
| !!! | TGATGTTTTAGAAAAATAAT+TGG | - | chr1.2:10186855-10186874 | MS.gene54080:intron | 15.0% |
| !! | AAGTCTAAGAATATTAGTAA+TGG | - | chr1.2:10185664-10185683 | MS.gene54080:intron | 20.0% |
| !! | AATAGAAATTTGAAAAACAC+GGG | + | chr1.2:10188002-10188021 | None:intergenic | 20.0% |
| !! | AATATTATACATTGTCAACT+AGG | + | chr1.2:10186968-10186987 | None:intergenic | 20.0% |
| !! | ACTAAAATATTGTTTGTGAT+GGG | - | chr1.2:10186576-10186595 | MS.gene54080:intron | 20.0% |
| !! | ACTTTATTAAATATGCAGAT+AGG | + | chr1.2:10187703-10187722 | None:intergenic | 20.0% |
| !! | ATTAAATGTAATGAAATGGA+AGG | + | chr1.2:10187412-10187431 | None:intergenic | 20.0% |
| !! | CATAGAAAAGCAATAAAAAA+GGG | - | chr1.2:10189413-10189432 | MS.gene54080:intron | 20.0% |
| !! | GAATAGAAATTTGAAAAACA+CGG | + | chr1.2:10188003-10188022 | None:intergenic | 20.0% |
| !! | TACAATTAAAAAGGACATTA+GGG | - | chr1.2:10188189-10188208 | MS.gene54080:intron | 20.0% |
| !! | TGTATATCAGTAGAAAAATA+CGG | + | chr1.2:10187008-10187027 | None:intergenic | 20.0% |
| !! | TTACAATTAAAAAGGACATT+AGG | - | chr1.2:10188188-10188207 | MS.gene54080:intron | 20.0% |
| !! | TTTATACATAAGCACTTATA+TGG | + | chr1.2:10187746-10187765 | None:intergenic | 20.0% |
| !!! | ACAAACATTTTACAAATTGA+AGG | - | chr1.2:10189308-10189327 | MS.gene54080:intron | 20.0% |
| !!! | GTAAAATTCAATTTTCAGTA+TGG | + | chr1.2:10187473-10187492 | None:intergenic | 20.0% |
| !!! | TAAATTTTAACACAATCTCA+AGG | + | chr1.2:10187667-10187686 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTAATCAAGGTT+GGG | - | chr1.2:10188869-10188888 | MS.gene54080:intron | 20.0% |
| !!! | TTCCTAACATTTTCTTTTAT+AGG | + | chr1.2:10186533-10186552 | None:intergenic | 20.0% |
| !!! | TTGAATTTTACCTTTTAATC+AGG | - | chr1.2:10187482-10187501 | MS.gene54080:intron | 20.0% |
| !!! | TTGTATGAATTTTATACACA+CGG | - | chr1.2:10185472-10185491 | MS.gene54080:intron | 20.0% |
| !!! | TTTTTTCAAAACAAAGGAAA+TGG | - | chr1.2:10188608-10188627 | MS.gene54080:intron | 20.0% |
| ! | AAATGCCACATTTGTTTAAT+TGG | - | chr1.2:10188301-10188320 | MS.gene54080:intron | 25.0% |
| ! | AATGTTAAAGTTGACTAAAG+AGG | - | chr1.2:10185710-10185729 | MS.gene54080:intron | 25.0% |
| ! | AATGTTATGTTTACATCAAG+GGG | - | chr1.2:10189050-10189069 | MS.gene54080:intron | 25.0% |
| ! | AATTATCAAAATAGGTGAAG+TGG | - | chr1.2:10186085-10186104 | MS.gene54080:intron | 25.0% |
| ! | AGAATGTTATGTTTACATCA+AGG | - | chr1.2:10189048-10189067 | MS.gene54080:intron | 25.0% |
| ! | AGATTTAGAAATTAATGAGC+TGG | - | chr1.2:10186553-10186572 | MS.gene54080:intron | 25.0% |
| ! | ATCATGTCAAATATGTATGA+TGG | - | chr1.2:10188734-10188753 | MS.gene54080:intron | 25.0% |
| ! | ATTATCAAAATAGGTGAAGT+GGG | - | chr1.2:10186086-10186105 | MS.gene54080:intron | 25.0% |
| ! | ATTATCATGTAAGATGTTGT+TGG | - | chr1.2:10187037-10187056 | MS.gene54080:intron | 25.0% |
| ! | ATTCACCTCCAAATATTAAA+GGG | + | chr1.2:10187614-10187633 | None:intergenic | 25.0% |
| ! | CCATAGAAAAGCAATAAAAA+AGG | - | chr1.2:10189412-10189431 | MS.gene54080:intron | 25.0% |
| ! | CTTACTTGATGTATGAAAAT+GGG | - | chr1.2:10189484-10189503 | MS.gene54080:intron | 25.0% |
| ! | CTTATGTAGATGAAAAAATC+AGG | - | chr1.2:10189630-10189649 | MS.gene54080:CDS | 25.0% |
| ! | GAAAAATGCCAACAAATAAA+AGG | + | chr1.2:10188050-10188069 | None:intergenic | 25.0% |
| ! | GAATGTTATGTTTACATCAA+GGG | - | chr1.2:10189049-10189068 | MS.gene54080:intron | 25.0% |
| ! | GACCTATAAAAGAAAATGTT+AGG | - | chr1.2:10186528-10186547 | MS.gene54080:intron | 25.0% |
| ! | GACTAAAATATTGTTTGTGA+TGG | - | chr1.2:10186575-10186594 | MS.gene54080:intron | 25.0% |
| ! | GTTAGTTAGTAGTTAGTAAA+TGG | - | chr1.2:10188993-10189012 | MS.gene54080:intron | 25.0% |
| ! | TATATAGTAGTACTAAGCAA+TGG | - | chr1.2:10187214-10187233 | MS.gene54080:intron | 25.0% |
| ! | TCAAGAATTTAACAACAAAG+TGG | - | chr1.2:10188068-10188087 | MS.gene54080:intron | 25.0% |
| ! | TGATTATTCTTCTCTTTCAA+CGG | - | chr1.2:10185496-10185515 | MS.gene54080:intron | 25.0% |
| ! | TTGAGTCTTAACTAACAAAT+TGG | - | chr1.2:10189198-10189217 | MS.gene54080:intron | 25.0% |
| ! | TTTCATCTACATAAGTGATT+CGG | + | chr1.2:10189625-10189644 | None:intergenic | 25.0% |
| !! | AATTTTACCTTTTAATCAGG+TGG | - | chr1.2:10187485-10187504 | MS.gene54080:intron | 25.0% |
| !! | ATGTTAAATGATTTGGATGT+TGG | + | chr1.2:10185259-10185278 | None:intergenic | 25.0% |
| !! | CACGTTATTTATTTCTTACA+CGG | - | chr1.2:10186815-10186834 | MS.gene54080:intron | 25.0% |
| !!! | ATATGCAAGTTGATTATCAA+TGG | + | chr1.2:10185619-10185638 | None:intergenic | 25.0% |
| !!! | ATTTACTGCTTTAGGTTTTT+TGG | - | chr1.2:10188674-10188693 | MS.gene54080:intron | 25.0% |
| !!! | CAGAGTTTTTTTCAAAACAA+AGG | - | chr1.2:10188602-10188621 | MS.gene54080:intron | 25.0% |
| !!! | CCTTTTTTATTGCTTTTCTA+TGG | + | chr1.2:10189415-10189434 | None:intergenic | 25.0% |
| !!! | CTGTTTTTTTTAATCAAGGT+TGG | - | chr1.2:10188868-10188887 | MS.gene54080:intron | 25.0% |
| !!! | TTATTTTGGTCTGTTTAGAT+TGG | + | chr1.2:10187954-10187973 | None:intergenic | 25.0% |
| AAAACACCCAATTAAGAGAA+GGG | - | chr1.2:10185780-10185799 | MS.gene54080:intron | 30.0% | |
| AAAATCGCATTTACTGCTTT+AGG | - | chr1.2:10188666-10188685 | MS.gene54080:intron | 30.0% | |
| AAATGCCCTTTAATATTTGG+AGG | - | chr1.2:10187606-10187625 | MS.gene54080:intron | 30.0% | |
| AATGAGAATACTTGAGAGTT+GGG | - | chr1.2:10186372-10186391 | MS.gene54080:intron | 30.0% | |
| AGACTATTTGATAGAGCTTA+CGG | + | chr1.2:10187895-10187914 | None:intergenic | 30.0% | |
| AGTCTTAACTAACAAATTGG+AGG | - | chr1.2:10189201-10189220 | MS.gene54080:intron | 30.0% | |
| CTCCTTACTACAAAATCTAT+GGG | + | chr1.2:10186464-10186483 | None:intergenic | 30.0% | |
| CTTATAAGACTAGATGTGTT+AGG | - | chr1.2:10186339-10186358 | MS.gene54080:intron | 30.0% | |
| CTTTGACCAAAAAAAGAGAA+GGG | - | chr1.2:10185808-10185827 | MS.gene54080:intron | 30.0% | |
| GAAAAAATCAGGTTAGGATT+GGG | - | chr1.2:10189641-10189660 | MS.gene54080:CDS | 30.0% | |
| GAAACGGATGTTAAATGATT+TGG | + | chr1.2:10185266-10185285 | None:intergenic | 30.0% | |
| GATTCACCTCCAAATATTAA+AGG | + | chr1.2:10187615-10187634 | None:intergenic | 30.0% | |
| GCAAACCAATTAAACAAATG+TGG | + | chr1.2:10188309-10188328 | None:intergenic | 30.0% | |
| GCTTACTTGATGTATGAAAA+TGG | - | chr1.2:10189483-10189502 | MS.gene54080:intron | 30.0% | |
| GTAGATGAAAAAATCAGGTT+AGG | - | chr1.2:10189635-10189654 | MS.gene54080:CDS | 30.0% | |
| GTGAAATGCCCTTTAATATT+TGG | - | chr1.2:10187603-10187622 | MS.gene54080:intron | 30.0% | |
| TAAGACCAATGATGTTCTAT+GGG | - | chr1.2:10186240-10186259 | MS.gene54080:CDS | 30.0% | |
| TAATTTATTATGCCAGACTG+TGG | - | chr1.2:10186117-10186136 | MS.gene54080:intron | 30.0% | |
| TATTAAATATGCAGATAGGC+TGG | + | chr1.2:10187699-10187718 | None:intergenic | 30.0% | |
| TCAACCAATGCACAAATAAA+CGG | - | chr1.2:10186679-10186698 | MS.gene54080:intron | 30.0% | |
| TCAACTAGGTCATATATTGT+GGG | + | chr1.2:10186954-10186973 | None:intergenic | 30.0% | |
| TCAACTGTGTCAAGTAATAT+GGG | - | chr1.2:10187166-10187185 | MS.gene54080:intron | 30.0% | |
| TCTCCTTACTACAAAATCTA+TGG | + | chr1.2:10186465-10186484 | None:intergenic | 30.0% | |
| TGAAAAAATCAGGTTAGGAT+TGG | - | chr1.2:10189640-10189659 | MS.gene54080:CDS | 30.0% | |
| TGGGGAATCATGAAATAAAA+TGG | - | chr1.2:10186875-10186894 | MS.gene54080:intron | 30.0% | |
| TGTTGTTACTATTGGCATAA+TGG | - | chr1.2:10186656-10186675 | MS.gene54080:intron | 30.0% | |
| TTGTTGATCAGCTATTATCA+CGG | + | chr1.2:10185762-10185781 | None:intergenic | 30.0% | |
| ! | AACTTGGTTGTTGTTACTAT+TGG | - | chr1.2:10186648-10186667 | MS.gene54080:intron | 30.0% |
| ! | ATTGCACATTGTTTTCAACT+TGG | + | chr1.2:10188096-10188115 | None:intergenic | 30.0% |
| ! | TCCATCATCTTTTCTACTAT+GGG | + | chr1.2:10186404-10186423 | None:intergenic | 30.0% |
| ! | TTCCATCATCTTTTCTACTA+TGG | + | chr1.2:10186405-10186424 | None:intergenic | 30.0% |
| ! | TTTTGTCAGTATGTTGAACA+AGG | + | chr1.2:10188507-10188526 | None:intergenic | 30.0% |
| !! | AAAGATGATGGAAAATAGAC+TGG | - | chr1.2:10186412-10186431 | MS.gene54080:intron | 30.0% |
| !! | AAGATGATGGAAAATAGACT+GGG | - | chr1.2:10186413-10186432 | MS.gene54080:intron | 30.0% |
| !! | AATATTAAAGGGCATTTCAC+CGG | + | chr1.2:10187603-10187622 | None:intergenic | 30.0% |
| !! | ATTAGTCTTGCTATAAAGTC+TGG | + | chr1.2:10187331-10187350 | None:intergenic | 30.0% |
| !! | ATTTTGTTTCTCACAACATC+AGG | + | chr1.2:10188651-10188670 | None:intergenic | 30.0% |
| !!! | AAACGCATAAGCTGTTTTTA+CGG | + | chr1.2:10185294-10185313 | None:intergenic | 30.0% |
| !!! | GCTGTTTTTATAAGCAATTC+TGG | - | chr1.2:10187816-10187835 | MS.gene54080:intron | 30.0% |
| !!! | TAATTTCCTTTTTTGGCATC+CGG | - | chr1.2:10185949-10185968 | MS.gene54080:intron | 30.0% |
| AAAAACAAACAGTGAACCTC+TGG | + | chr1.2:10189669-10189688 | None:intergenic | 35.0% | |
| AAAATACTGCTCAAGTCGAA+GGG | - | chr1.2:10186198-10186217 | MS.gene54080:CDS | 35.0% | |
| AAAATAGACTGGGATGGTTT+GGG | - | chr1.2:10186423-10186442 | MS.gene54080:intron | 35.0% | |
| AACCAATGCACAAATAAACG+GGG | - | chr1.2:10186681-10186700 | MS.gene54080:intron | 35.0% | |
| ACAAAATTGCTTTCCAGAGT+GGG | - | chr1.2:10188521-10188540 | MS.gene54080:intron | 35.0% | |
| ACATCCTGTGAATAGTTACT+TGG | - | chr1.2:10188341-10188360 | MS.gene54080:intron | 35.0% | |
| ACCCATAGTAGAAAAGATGA+TGG | - | chr1.2:10186400-10186419 | MS.gene54080:intron | 35.0% | |
| ACTGATCATCAATCATTAGC+TGG | - | chr1.2:10188841-10188860 | MS.gene54080:intron | 35.0% | |
| AGCATTTCCCTTCTCTTAAT+TGG | + | chr1.2:10185790-10185809 | None:intergenic | 35.0% | |
| ATCCGTGTTAGATACAGAAA+CGG | + | chr1.2:10185323-10185342 | None:intergenic | 35.0% | |
| ATGAGAATACTTGAGAGTTG+GGG | - | chr1.2:10186373-10186392 | MS.gene54080:intron | 35.0% | |
| CAAAACAAAGGAAATGGTTC+AGG | - | chr1.2:10188614-10188633 | MS.gene54080:intron | 35.0% | |
| CAAAACACCCAATTAAGAGA+AGG | - | chr1.2:10185779-10185798 | MS.gene54080:intron | 35.0% | |
| CAACCAATGCACAAATAAAC+GGG | - | chr1.2:10186680-10186699 | MS.gene54080:intron | 35.0% | |
| CATGATCCTAACTTCAATTC+AGG | + | chr1.2:10189566-10189585 | None:intergenic | 35.0% | |
| CTCGTTAAGGATGTTGAAAA+AGG | - | chr1.2:10185849-10185868 | MS.gene54080:intron | 35.0% | |
| CTGAATTGAAGTTAGGATCA+TGG | - | chr1.2:10189564-10189583 | MS.gene54080:CDS | 35.0% | |
| GAATGAGAATACTTGAGAGT+TGG | - | chr1.2:10186371-10186390 | MS.gene54080:intron | 35.0% | |
| GAGAATAGTTAGATCACTAG+AGG | - | chr1.2:10186497-10186516 | MS.gene54080:intron | 35.0% | |
| GATGTATGAAAATGGGAAAC+AGG | - | chr1.2:10189491-10189510 | MS.gene54080:CDS | 35.0% | |
| GCACGAATAAATGCATAATG+TGG | + | chr1.2:10187637-10187656 | None:intergenic | 35.0% | |
| GCATTTCCCTTCTCTTAATT+GGG | + | chr1.2:10185789-10185808 | None:intergenic | 35.0% | |
| GCTTTGACCAAAAAAAGAGA+AGG | - | chr1.2:10185807-10185826 | MS.gene54080:intron | 35.0% | |
| GTAAGACCAATGATGTTCTA+TGG | - | chr1.2:10186239-10186258 | MS.gene54080:CDS | 35.0% | |
| GTCAACTAGGTCATATATTG+TGG | + | chr1.2:10186955-10186974 | None:intergenic | 35.0% | |
| GTCAACTGTGTCAAGTAATA+TGG | - | chr1.2:10187165-10187184 | MS.gene54080:intron | 35.0% | |
| TAAAAATTCACTCCACAGTC+TGG | + | chr1.2:10186132-10186151 | None:intergenic | 35.0% | |
| TCAAAGATACGAATTACGGT+GGG | + | chr1.2:10188763-10188782 | None:intergenic | 35.0% | |
| TCTATCCCATAGAACATCAT+TGG | + | chr1.2:10186248-10186267 | None:intergenic | 35.0% | |
| TGAAATGTTAGCCAACAGAA+GGG | - | chr1.2:10189276-10189295 | MS.gene54080:intron | 35.0% | |
| TTATCCATAGTGTAGTGCTT+GGG | - | chr1.2:10188118-10188137 | MS.gene54080:intron | 35.0% | |
| TTCCGTTTCTGTATCTAACA+CGG | - | chr1.2:10185318-10185337 | MS.gene54080:CDS | 35.0% | |
| TTGAAATGTTAGCCAACAGA+AGG | - | chr1.2:10189275-10189294 | MS.gene54080:intron | 35.0% | |
| TTGAAGTTAGGATCATGGAA+AGG | - | chr1.2:10189569-10189588 | MS.gene54080:CDS | 35.0% | |
| TTTATCCATAGTGTAGTGCT+TGG | - | chr1.2:10188117-10188136 | MS.gene54080:intron | 35.0% | |
| ! | AACATCAGAGTATCCAAACA+AGG | + | chr1.2:10186842-10186861 | None:intergenic | 35.0% |
| ! | AGTAAGGAGAGTTGATTAGA+TGG | - | chr1.2:10186475-10186494 | MS.gene54080:intron | 35.0% |
| ! | ATTGATGATCAGTCCCATAA+CGG | + | chr1.2:10188834-10188853 | None:intergenic | 35.0% |
| ! | CGGTGTTGAACATTAATACA+AGG | + | chr1.2:10185742-10185761 | None:intergenic | 35.0% |
| ! | GACCCATAGATTTTGTAGTA+AGG | - | chr1.2:10186459-10186478 | MS.gene54080:intron | 35.0% |
| ! | GCTTTTCTATGGATAGAGAA+AGG | + | chr1.2:10189404-10189423 | None:intergenic | 35.0% |
| ! | TGTCATTAAGCACTGTTATC+TGG | - | chr1.2:10188270-10188289 | MS.gene54080:intron | 35.0% |
| ! | TTTGAACAAGAGCACAAGAA+TGG | - | chr1.2:10187252-10187271 | MS.gene54080:CDS | 35.0% |
| !! | AACAAATCAAAAGCACTACG+CGG | + | chr1.2:10187978-10187997 | None:intergenic | 35.0% |
| !! | AGAGACTAACTTGTTCTTGT+TGG | - | chr1.2:10189369-10189388 | MS.gene54080:intron | 35.0% |
| !! | CAATTTCTGAGACGAAAAAG+AGG | + | chr1.2:10189152-10189171 | None:intergenic | 35.0% |
| !! | TCAAAGCTCTAGATACTGAA+TGG | - | chr1.2:10189519-10189538 | MS.gene54080:CDS | 35.0% |
| !!! | AAGTTTTTTCCCACTAAGTG+GGG | + | chr1.2:10186633-10186652 | None:intergenic | 35.0% |
| !!! | ACTGCTTTAGGTTTTTTGGA+TGG | - | chr1.2:10188678-10188697 | MS.gene54080:intron | 35.0% |
| !!! | CAAGTTTTTTCCCACTAAGT+GGG | + | chr1.2:10186634-10186653 | None:intergenic | 35.0% |
| !!! | CGCTTATTTTATTCTCGTGT+TGG | + | chr1.2:10186289-10186308 | None:intergenic | 35.0% |
| !!! | GCATTTCCCTTCTCTTTTTT+TGG | + | chr1.2:10185817-10185836 | None:intergenic | 35.0% |
| !!! | TTTAGGTTTTTTGGATGGAG+AGG | - | chr1.2:10188683-10188702 | MS.gene54080:intron | 35.0% |
| AAAGGAAGAACACAAAGAGG+TGG | - | chr1.2:10187536-10187555 | MS.gene54080:intron | 40.0% | |
| AAATATGCAGATAGGCTGGT+AGG | + | chr1.2:10187695-10187714 | None:intergenic | 40.0% | |
| AATATGCAGATAGGCTGGTA+GGG | + | chr1.2:10187694-10187713 | None:intergenic | 40.0% | |
| AATGCACAAATAAACGGGGA+GGG | - | chr1.2:10186685-10186704 | MS.gene54080:intron | 40.0% | |
| ACGTCCTTATGCTAGTAGAT+AGG | - | chr1.2:10187918-10187937 | MS.gene54080:intron | 40.0% | |
| AGTTAGATCACTAGAGGTAG+AGG | - | chr1.2:10186503-10186522 | MS.gene54080:intron | 40.0% | |
| ATCTCCAACCAACATGTTGT+TGG | + | chr1.2:10188970-10188989 | None:intergenic | 40.0% | |
| CAAAATACTGCTCAAGTCGA+AGG | - | chr1.2:10186197-10186216 | MS.gene54080:CDS | 40.0% | |
| CAAAGACGAAAATGTTGCGT+TGG | - | chr1.2:10186312-10186331 | MS.gene54080:CDS | 40.0% | |
| CCACTTAGTGGGAAAAAACT+TGG | - | chr1.2:10186632-10186651 | MS.gene54080:intron | 40.0% | |
| CGTAGCTTCTCTTCTTTCAA+AGG | - | chr1.2:10185366-10185385 | MS.gene54080:intron | 40.0% | |
| CTAGGTCATATATTGTGGGA+CGG | + | chr1.2:10186950-10186969 | None:intergenic | 40.0% | |
| CTGTGTCAAGTAATATGGGA+CGG | - | chr1.2:10187170-10187189 | MS.gene54080:intron | 40.0% | |
| GAAAATAGACTGGGATGGTT+TGG | - | chr1.2:10186422-10186441 | MS.gene54080:intron | 40.0% | |
| GACAAAATTGCTTTCCAGAG+TGG | - | chr1.2:10188520-10188539 | MS.gene54080:intron | 40.0% | |
| GATGGAGAGGTTTCTCTAAA+AGG | - | chr1.2:10188696-10188715 | MS.gene54080:intron | 40.0% | |
| GCAAAAGGAAGAACACAAAG+AGG | - | chr1.2:10187533-10187552 | MS.gene54080:intron | 40.0% | |
| GCCAAAAACCACAGATTACT+AGG | + | chr1.2:10188367-10188386 | None:intergenic | 40.0% | |
| GGATCATGGAAAGGACAATA+TGG | - | chr1.2:10189578-10189597 | MS.gene54080:CDS | 40.0% | |
| GGGGTCAAAGATACGAATTA+CGG | + | chr1.2:10188767-10188786 | None:intergenic | 40.0% | |
| GTCAAAGATACGAATTACGG+TGG | + | chr1.2:10188764-10188783 | None:intergenic | 40.0% | |
| GTTAGATACAGAAACGGAAG+CGG | + | chr1.2:10185317-10185336 | None:intergenic | 40.0% | |
| GTTTGCACCACCTGATTAAA+AGG | + | chr1.2:10187495-10187514 | None:intergenic | 40.0% | |
| TAGGCCAAGTAACTATTCAC+AGG | + | chr1.2:10188348-10188367 | None:intergenic | 40.0% | |
| TAGTAGTGGTTAGCACTACT+GGG | + | chr1.2:10186756-10186775 | None:intergenic | 40.0% | |
| TCATGGAAAGGACAATATGG+AGG | - | chr1.2:10189581-10189600 | MS.gene54080:CDS | 40.0% | |
| TCTCCAACCAACATGTTGTT+GGG | + | chr1.2:10188969-10188988 | None:intergenic | 40.0% | |
| TGAGCCTATCTACTAGCATA+AGG | + | chr1.2:10187925-10187944 | None:intergenic | 40.0% | |
| TGATGGAAAATAGACTGGGA+TGG | - | chr1.2:10186417-10186436 | MS.gene54080:intron | 40.0% | |
| TGCTAACCACTACTACAACA+CGG | - | chr1.2:10186761-10186780 | MS.gene54080:intron | 40.0% | |
| TGTATCACCAAAAACACCAG+AGG | + | chr1.2:10186179-10186198 | None:intergenic | 40.0% | |
| TGTTCTATGGGATAGAGTGT+TGG | - | chr1.2:10186252-10186271 | MS.gene54080:CDS | 40.0% | |
| TTACTTGGCCTAGTAATCTG+TGG | - | chr1.2:10188356-10188375 | MS.gene54080:intron | 40.0% | |
| TTTACCCAAGCACTACACTA+TGG | + | chr1.2:10188125-10188144 | None:intergenic | 40.0% | |
| TTTCTTACACGGTCCTTGTT+TGG | - | chr1.2:10186826-10186845 | MS.gene54080:intron | 40.0% | |
| ! | AAACTCGGGTTCTTTTCCTA+GGG | - | chr1.2:10188922-10188941 | MS.gene54080:intron | 40.0% |
| ! | AAGCACTACGCGGTTTATTT+TGG | + | chr1.2:10187968-10187987 | None:intergenic | 40.0% |
| ! | CAACATGTTGGTTGGAGATA+TGG | - | chr1.2:10188971-10188990 | MS.gene54080:intron | 40.0% |
| ! | GCCTAGTAATCTGTGGTTTT+TGG | - | chr1.2:10188363-10188382 | MS.gene54080:intron | 40.0% |
| ! | GTTCTATGGGATAGAGTGTT+GGG | - | chr1.2:10186253-10186272 | MS.gene54080:CDS | 40.0% |
| ! | TGGAGGAGTTTTACTGCAAA+AGG | - | chr1.2:10187518-10187537 | MS.gene54080:intron | 40.0% |
| ! | TTGATGATCAGTCCCATAAC+GGG | + | chr1.2:10188833-10188852 | None:intergenic | 40.0% |
| !! | ATCATTGGTCTTACTCTGTC+CGG | + | chr1.2:10186233-10186252 | None:intergenic | 40.0% |
| !! | GAAGTATTGTGTGAAAGAGC+CGG | - | chr1.2:10187581-10187600 | MS.gene54080:intron | 40.0% |
| !! | GTCATTTTAGTCCCTTCTGT+TGG | + | chr1.2:10189290-10189309 | None:intergenic | 40.0% |
| !!! | ATAAGCTGTTTTTACGGCGA+GGG | + | chr1.2:10185288-10185307 | None:intergenic | 40.0% |
| !!! | CCAAGTTTTTTCCCACTAAG+TGG | + | chr1.2:10186635-10186654 | None:intergenic | 40.0% |
| AACATCCTTAACGAGTGCTC+CGG | + | chr1.2:10185844-10185863 | None:intergenic | 45.0% | |
| AATCAGGTGGTGCAAACAGA+TGG | - | chr1.2:10187498-10187517 | MS.gene54080:intron | 45.0% | |
| ACGACTCTAGCAGTCAAACT+CGG | - | chr1.2:10188907-10188926 | MS.gene54080:intron | 45.0% | |
| ACTAAGTGGGGTTGACTACA+TGG | + | chr1.2:10186621-10186640 | None:intergenic | 45.0% | |
| AGAGAAGCTACGAGATCGTT+AGG | + | chr1.2:10185358-10185377 | None:intergenic | 45.0% | |
| AGAGAAGGGAAATGCTAACC+CGG | - | chr1.2:10185822-10185841 | MS.gene54080:intron | 45.0% | |
| ATATGCAGATAGGCTGGTAG+GGG | + | chr1.2:10187693-10187712 | None:intergenic | 45.0% | |
| ATGCACAAATAAACGGGGAG+GGG | - | chr1.2:10186686-10186705 | MS.gene54080:intron | 45.0% | |
| ATGTAGTCAACCCCACTTAG+TGG | - | chr1.2:10186620-10186639 | MS.gene54080:intron | 45.0% | |
| CAACTCTCCCAACAACATGT+TGG | - | chr1.2:10188959-10188978 | MS.gene54080:intron | 45.0% | |
| CAATGCACAAATAAACGGGG+AGG | - | chr1.2:10186684-10186703 | MS.gene54080:intron | 45.0% | |
| CTAACCACTACTACAACACG+GGG | - | chr1.2:10186763-10186782 | MS.gene54080:intron | 45.0% | |
| CTCCCCGTTTATTTGTGCAT+TGG | + | chr1.2:10186686-10186705 | None:intergenic | 45.0% | |
| GCTAACCACTACTACAACAC+GGG | - | chr1.2:10186762-10186781 | MS.gene54080:intron | 45.0% | |
| GTAGTAGTGGTTAGCACTAC+TGG | + | chr1.2:10186757-10186776 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr1.2:10187174-10187193 | MS.gene54080:intron | 45.0% | |
| GTCATATATTGTGGGACGGA+GGG | + | chr1.2:10186946-10186965 | None:intergenic | 45.0% | |
| TAACCACTACTACAACACGG+GGG | - | chr1.2:10186764-10186783 | MS.gene54080:intron | 45.0% | |
| TACATCATGCAGAGCATGTG+TGG | + | chr1.2:10188220-10188239 | None:intergenic | 45.0% | |
| TACTATTGGCGTAATGCCTC+TGG | - | chr1.2:10186160-10186179 | MS.gene54080:intron | 45.0% | |
| TCGTATCTTTGACCCCCATT+AGG | - | chr1.2:10188771-10188790 | MS.gene54080:intron | 45.0% | |
| TCTCCCAACAACATGTTGGT+TGG | - | chr1.2:10188963-10188982 | MS.gene54080:intron | 45.0% | |
| TGACAATATGACTCTCCCCT+AGG | + | chr1.2:10188941-10188960 | None:intergenic | 45.0% | |
| TGTAGTCAACCCCACTTAGT+GGG | - | chr1.2:10186621-10186640 | MS.gene54080:intron | 45.0% | |
| TGTCAAGTAATATGGGACGG+AGG | - | chr1.2:10187173-10187192 | MS.gene54080:intron | 45.0% | |
| ! | AACTCGGGTTCTTTTCCTAG+GGG | - | chr1.2:10188923-10188942 | MS.gene54080:intron | 45.0% |
| ! | ACTGCTAGAGTCGTCCTTTT+GGG | + | chr1.2:10188901-10188920 | None:intergenic | 45.0% |
| ! | AGTCGAAGGGTCAATTTTGC+CGG | - | chr1.2:10186211-10186230 | MS.gene54080:CDS | 45.0% |
| ! | CAAACTCGGGTTCTTTTCCT+AGG | - | chr1.2:10188921-10188940 | MS.gene54080:intron | 45.0% |
| ! | CGTAATGCCTCTGGTGTTTT+TGG | - | chr1.2:10186169-10186188 | MS.gene54080:CDS | 45.0% |
| ! | GAAGCGCCTGAATTGAAGTT+AGG | - | chr1.2:10189557-10189576 | MS.gene54080:CDS | 45.0% |
| !! | TGTTTTTACGGCGAGGGAAA+CGG | + | chr1.2:10185282-10185301 | None:intergenic | 45.0% |
| !!! | CATAAGCTGTTTTTACGGCG+AGG | + | chr1.2:10185289-10185308 | None:intergenic | 45.0% |
| !! | AATAAACTAAAAATAATTTA+TGG | - | chr1.2:10187851-10187870 | MS.gene54080:intron | 5.0% |
| !! | ATTAAATTAATTATCAAAAT+AGG | - | chr1.2:10186077-10186096 | MS.gene54080:intron | 5.0% |
| !!! | ATTTTAAGTATTTAATTATA+GGG | - | chr1.2:10189246-10189265 | MS.gene54080:intron | 5.0% |
| ACATCCTTAACGAGTGCTCC+GGG | + | chr1.2:10185843-10185862 | None:intergenic | 50.0% | |
| AGAGGTGGCTGAAGTAGTTC+AGG | - | chr1.2:10187551-10187570 | MS.gene54080:intron | 50.0% | |
| AGGTTAGGATTGGGATCCAG+AGG | - | chr1.2:10189650-10189669 | MS.gene54080:CDS | 50.0% | |
| AGGTTGGGATACCTCCCAAA+AGG | - | chr1.2:10188884-10188903 | MS.gene54080:intron | 50.0% | |
| ATACCTTCGGACGCCTAATG+GGG | + | chr1.2:10188787-10188806 | None:intergenic | 50.0% | |
| CACTACTGGGACATGAGCAT+TGG | + | chr1.2:10186743-10186762 | None:intergenic | 50.0% | |
| CGACTCTAGCAGTCAAACTC+GGG | - | chr1.2:10188908-10188927 | MS.gene54080:intron | 50.0% | |
| CGAGATCGTTAGGACCTGTT+CGG | + | chr1.2:10185348-10185367 | None:intergenic | 50.0% | |
| GATACCTTCGGACGCCTAAT+GGG | + | chr1.2:10188788-10188807 | None:intergenic | 50.0% | |
| GGTCATATATTGTGGGACGG+AGG | + | chr1.2:10186947-10186966 | None:intergenic | 50.0% | |
| GTAAGCCATGGGGATACCTT+CGG | + | chr1.2:10188800-10188819 | None:intergenic | 50.0% | |
| TCTAACACGGATGTCCGAAC+AGG | - | chr1.2:10185331-10185350 | MS.gene54080:CDS | 50.0% | |
| TGCACAAATAAACGGGGAGG+GGG | - | chr1.2:10186687-10186706 | MS.gene54080:intron | 50.0% | |
| TTGCTTTCCAGAGTGGGATG+TGG | - | chr1.2:10188527-10188546 | MS.gene54080:intron | 50.0% | |
| ! | GACTGCTAGAGTCGTCCTTT+TGG | + | chr1.2:10188902-10188921 | None:intergenic | 50.0% |
| !! | CTATGGGATAGAGTGTTGGG+CGG | - | chr1.2:10186256-10186275 | MS.gene54080:CDS | 50.0% |
| !! | GGACATGAGCATTGGTGTGT+GGG | + | chr1.2:10186735-10186754 | None:intergenic | 50.0% |
| AACACGGGGGACGATGACTA+TGG | - | chr1.2:10186777-10186796 | MS.gene54080:intron | 55.0% | |
| ACTCCCTCTGGACCCGTTAT+GGG | - | chr1.2:10188818-10188837 | MS.gene54080:intron | 55.0% | |
| CAAATAAACGGGGAGGGGGA+AGG | - | chr1.2:10186691-10186710 | MS.gene54080:intron | 55.0% | |
| CAGGTGGTGCAAACAGATGG+AGG | - | chr1.2:10187501-10187520 | MS.gene54080:intron | 55.0% | |
| CAGTACACCACATCCCACTC+TGG | + | chr1.2:10188537-10188556 | None:intergenic | 55.0% | |
| GGATACCTTCGGACGCCTAA+TGG | + | chr1.2:10188789-10188808 | None:intergenic | 55.0% | |
| GTCCAGAGGGAGTAAGCCAT+GGG | + | chr1.2:10188811-10188830 | None:intergenic | 55.0% | |
| TACCTTCGGACGCCTAATGG+GGG | + | chr1.2:10188786-10188805 | None:intergenic | 55.0% | |
| TACTCCCTCTGGACCCGTTA+TGG | - | chr1.2:10188817-10188836 | MS.gene54080:intron | 55.0% | |
| TCCAGAGGGAGTAAGCCATG+GGG | + | chr1.2:10188810-10188829 | None:intergenic | 55.0% | |
| TGTTCACAGCCAACATCCCC+TGG | - | chr1.2:10188555-10188574 | MS.gene54080:intron | 55.0% | |
| ! | CTAACCCGGAGCACTCGTTA+AGG | - | chr1.2:10185836-10185855 | MS.gene54080:intron | 55.0% |
| ! | GCTAGAGTCGTCCTTTTGGG+AGG | + | chr1.2:10188898-10188917 | None:intergenic | 55.0% |
| !! | AGGTGGGTATCGGAGTGCAT+TGG | - | chr1.2:10188578-10188597 | MS.gene54080:intron | 55.0% |
| !! | AGTCCCATAACGGGTCCAGA+GGG | + | chr1.2:10188824-10188843 | None:intergenic | 55.0% |
| !! | GGGACATGAGCATTGGTGTG+TGG | + | chr1.2:10186736-10186755 | None:intergenic | 55.0% |
| !! | GGTGGGTATCGGAGTGCATT+GGG | - | chr1.2:10188579-10188598 | MS.gene54080:intron | 55.0% |
| !!! | CTTTTTTGGCATCCGGTGCC+CGG | - | chr1.2:10185956-10185975 | MS.gene54080:intron | 55.0% |
| !!! | TTTTTTGGCATCCGGTGCCC+GGG | - | chr1.2:10185957-10185976 | MS.gene54080:intron | 55.0% |
| ACTCCGATACCCACCTCCAG+GGG | + | chr1.2:10188574-10188593 | None:intergenic | 60.0% | |
| AGCCAACATCCCCTGGAGGT+GGG | - | chr1.2:10188562-10188581 | MS.gene54080:intron | 60.0% | |
| AGGGTCATGCTAACCGCCAG+CGG | + | chr1.2:10185986-10186005 | None:intergenic | 60.0% | |
| ATAAACGGGGAGGGGGAAGG+AGG | - | chr1.2:10186694-10186713 | MS.gene54080:intron | 60.0% | |
| CACTCCGATACCCACCTCCA+GGG | + | chr1.2:10188575-10188594 | None:intergenic | 60.0% | |
| CATCCCCTGGAGGTGGGTAT+CGG | - | chr1.2:10188568-10188587 | MS.gene54080:intron | 60.0% | |
| CGTCCCCCGTGTTGTAGTAG+TGG | + | chr1.2:10186770-10186789 | None:intergenic | 60.0% | |
| GGTCCAGAGGGAGTAAGCCA+TGG | + | chr1.2:10188812-10188831 | None:intergenic | 60.0% | |
| TACCCACCTCCAGGGGATGT+TGG | + | chr1.2:10188567-10188586 | None:intergenic | 60.0% | |
| TCACAGCCAACATCCCCTGG+AGG | - | chr1.2:10188558-10188577 | MS.gene54080:intron | 60.0% | |
| TCCCCATGGCTTACTCCCTC+TGG | - | chr1.2:10188806-10188825 | MS.gene54080:intron | 60.0% | |
| ! | GAGGGGGAAGGAGGTGTAGT+GGG | - | chr1.2:10186703-10186722 | MS.gene54080:intron | 60.0% |
| !! | CAGTCCCATAACGGGTCCAG+AGG | + | chr1.2:10188825-10188844 | None:intergenic | 60.0% |
| !! | CGGGCACCGGATGCCAAAAA+AGG | + | chr1.2:10185958-10185977 | None:intergenic | 60.0% |
| !! | TTTTTGGCATCCGGTGCCCG+GGG | - | chr1.2:10185958-10185977 | MS.gene54080:intron | 60.0% |
| CAGCCAACATCCCCTGGAGG+TGG | - | chr1.2:10188561-10188580 | MS.gene54080:intron | 65.0% | |
| GACCCCCATTAGGCGTCCGA+AGG | - | chr1.2:10188781-10188800 | MS.gene54080:intron | 65.0% | |
| GCACTCCGATACCCACCTCC+AGG | + | chr1.2:10188576-10188595 | None:intergenic | 65.0% | |
| ! | GGAGGGGGAAGGAGGTGTAG+TGG | - | chr1.2:10186702-10186721 | MS.gene54080:intron | 65.0% |
| !! | GGCGTCCGAAGGTATCCCCA+TGG | - | chr1.2:10188792-10188811 | MS.gene54080:intron | 65.0% |
| CTAACCGCCAGCGGTGCCCC+GGG | + | chr1.2:10185977-10185996 | None:intergenic | 75.0% | |
| GCTAACCGCCAGCGGTGCCC+CGG | + | chr1.2:10185978-10185997 | None:intergenic | 75.0% | |
| ! | GCCAGCGGTGCCCCGGGCAC+CGG | + | chr1.2:10185971-10185990 | None:intergenic | 85.0% |
| !!! | GGTGCCCGGGGCACCGCTGG+CGG | - | chr1.2:10185970-10185989 | MS.gene54080:intron | 85.0% |
| !!! | TCCGGTGCCCGGGGCACCGC+TGG | - | chr1.2:10185967-10185986 | MS.gene54080:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 10185178 | 10189700 | 10185178 | ID=MS.gene54080 |
| chr1.2 | mRNA | 10185178 | 10189700 | 10185178 | ID=MS.gene54080.t1;Parent=MS.gene54080 |
| chr1.2 | exon | 10189491 | 10189700 | 10189491 | ID=MS.gene54080.t1.exon1;Parent=MS.gene54080.t1 |
| chr1.2 | CDS | 10189491 | 10189700 | 10189491 | ID=cds.MS.gene54080.t1;Parent=MS.gene54080.t1 |
| chr1.2 | exon | 10187251 | 10187374 | 10187251 | ID=MS.gene54080.t1.exon2;Parent=MS.gene54080.t1 |
| chr1.2 | CDS | 10187251 | 10187374 | 10187251 | ID=cds.MS.gene54080.t1;Parent=MS.gene54080.t1 |
| chr1.2 | exon | 10186161 | 10186340 | 10186161 | ID=MS.gene54080.t1.exon3;Parent=MS.gene54080.t1 |
| chr1.2 | CDS | 10186161 | 10186340 | 10186161 | ID=cds.MS.gene54080.t1;Parent=MS.gene54080.t1 |
| chr1.2 | exon | 10185178 | 10185365 | 10185178 | ID=MS.gene54080.t1.exon4;Parent=MS.gene54080.t1 |
| chr1.2 | CDS | 10185178 | 10185365 | 10185178 | ID=cds.MS.gene54080.t1;Parent=MS.gene54080.t1 |
| Gene Sequence |
| Protein sequence |
