Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060844.t1 | KEH28672.1 | 95.4 | 65 | 3 | 0 | 1 | 65 | 1 | 65 | 7.20E-27 | 130.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060844.t1 | A0A072UG52 | 95.4 | 65 | 3 | 0 | 1 | 65 | 1 | 65 | 5.2e-27 | 130.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060843 | MS.gene060844 | 0.914264 | 2.35E-84 | -1.69E-46 |
| MS.gene060844 | MS.gene060845 | 0.831594 | 1.53E-55 | -1.69E-46 |
| MS.gene060844 | MS.gene32747 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene060844 | MS.gene38381 | 0.815498 | 8.96E-52 | -1.69E-46 |
| MS.gene060844 | MS.gene38555 | 0.800282 | 1.55E-48 | -1.69E-46 |
| MS.gene060844 | MS.gene47903 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene060844 | MS.gene61716 | 0.940726 | 1.42E-100 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060844.t1 | MTR_4g009870 | 95.977 | 174 | 7 | 0 | 1 | 174 | 1 | 174 | 1.44e-115 | 331 |
| MS.gene060844.t1 | MTR_4g009870 | 33.537 | 164 | 85 | 3 | 26 | 165 | 147 | 310 | 1.58e-13 | 67.4 |
| MS.gene060844.t1 | MTR_4g009870 | 95.977 | 174 | 7 | 0 | 1 | 174 | 1 | 174 | 1.83e-115 | 332 |
| MS.gene060844.t1 | MTR_4g009870 | 33.735 | 166 | 108 | 2 | 1 | 165 | 194 | 358 | 6.52e-15 | 71.6 |
| MS.gene060844.t1 | MTR_4g009870 | 30.994 | 171 | 116 | 2 | 4 | 173 | 173 | 342 | 4.83e-13 | 66.2 |
| MS.gene060844.t1 | MTR_4g009870 | 35.503 | 169 | 108 | 1 | 1 | 169 | 98 | 265 | 5.98e-13 | 65.9 |
| MS.gene060844.t1 | MTR_4g009870 | 35.135 | 148 | 95 | 1 | 26 | 173 | 147 | 293 | 6.09e-13 | 65.9 |
| MS.gene060844.t1 | MTR_4g116170 | 66.092 | 174 | 59 | 0 | 1 | 174 | 197 | 370 | 4.96e-65 | 209 |
| MS.gene060844.t1 | MTR_4g116170 | 31.928 | 166 | 111 | 2 | 1 | 165 | 390 | 554 | 9.50e-17 | 77.0 |
| MS.gene060844.t1 | MTR_4g116170 | 35.882 | 170 | 108 | 1 | 4 | 173 | 321 | 489 | 7.52e-15 | 71.6 |
| MS.gene060844.t1 | MTR_4g116170 | 28.182 | 220 | 111 | 2 | 1 | 173 | 246 | 465 | 1.49e-13 | 68.2 |
| MS.gene060844.t1 | MTR_4g116170 | 31.395 | 172 | 110 | 3 | 6 | 170 | 365 | 535 | 5.14e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060844.t1 | AT1G15740 | 70.286 | 175 | 51 | 1 | 1 | 174 | 205 | 379 | 2.41e-70 | 223 |
| MS.gene060844.t1 | AT1G15740 | 37.647 | 170 | 105 | 1 | 4 | 173 | 330 | 498 | 6.63e-18 | 80.5 |
| MS.gene060844.t1 | AT1G15740 | 34.014 | 147 | 96 | 1 | 28 | 174 | 306 | 451 | 5.03e-13 | 66.6 |
| MS.gene060844.t1 | AT1G15740 | 30.481 | 187 | 104 | 2 | 4 | 165 | 378 | 563 | 2.45e-11 | 61.6 |
| MS.gene060844.t1 | AT4G23840 | 34.911 | 169 | 104 | 2 | 1 | 168 | 79 | 242 | 8.15e-13 | 65.9 |
Find 38 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGCTTGGATTCACTTTC+AGG | 0.068243 | 4.3:+83599138 | MS.gene060844:CDS |
| TGTAGTAAAGTCACTGATTT+TGG | 0.168024 | 4.3:+83598491 | MS.gene060844:CDS |
| GAAGCTTGCCCTCTTAAATT+TGG | 0.198047 | 4.3:+83599095 | MS.gene060844:CDS |
| TTAAGCAGGATTGACAAAAT+TGG | 0.248392 | 4.3:+83600453 | MS.gene060844:intron |
| CTTCTCTGGTCTTGTTAACT+TGG | 0.285104 | 4.3:+83597629 | MS.gene060844:CDS |
| TCCGATATGAAGCCTTTATC+AGG | 0.299738 | 4.3:+83597997 | MS.gene060844:CDS |
| TAACTTGGTCAAGTTGGATT+TGG | 0.325759 | 4.3:+83597644 | MS.gene060844:CDS |
| GAGAGATGTCCTGGGATTCA+TGG | 0.355408 | 4.3:+83597666 | MS.gene060844:CDS |
| TTGGATTTGGAGAGATGTCC+TGG | 0.400413 | 4.3:+83597657 | MS.gene060844:CDS |
| AACCTTGATTCATGTAAGAT+TGG | 0.403335 | 4.3:+83600484 | MS.gene060844:CDS |
| AGATGCAACAAACCTGATAA+AGG | 0.406288 | 4.3:-83598009 | None:intergenic |
| TCTTGTAACATCTGCATGCT+TGG | 0.409080 | 4.3:+83599125 | MS.gene060844:CDS |
| TTTCTGACAGAGGGTGTGAT+AGG | 0.424800 | 4.3:+83600021 | MS.gene060844:CDS |
| CAAGGAATGAGTGCCTTCTC+TGG | 0.429753 | 4.3:+83597615 | None:intergenic |
| GACACCCTTCCAAATTTAAG+AGG | 0.430139 | 4.3:-83599104 | None:intergenic |
| ACCTGATAAAGGCTTCATAT+CGG | 0.443237 | 4.3:-83597998 | None:intergenic |
| AGATTCAAGTTTGACAGTGC+AGG | 0.445204 | 4.3:-83599984 | None:intergenic |
| AAAGTTGAAAGTATTAAACT+TGG | 0.469983 | 4.3:+83600206 | MS.gene060844:CDS |
| TCTTGTTAACTTGGTCAAGT+TGG | 0.476241 | 4.3:+83597638 | MS.gene060844:CDS |
| CACCAATCTTACATGAATCA+AGG | 0.510275 | 4.3:-83600486 | None:intergenic |
| TGATGAAGGATTGGTGAACT+TGG | 0.515944 | 4.3:+83600507 | MS.gene060844:CDS |
| GATTCAAGTTTGACAGTGCA+GGG | 0.517023 | 4.3:-83599983 | None:intergenic |
| CTTGCCCTCTTAAATTTGGA+AGG | 0.517960 | 4.3:+83599099 | MS.gene060844:CDS |
| TCATGTAAGATTGGTGATGA+AGG | 0.532453 | 4.3:+83600493 | MS.gene060844:CDS |
| GAAGGATTGGTGAACTTGGC+AGG | 0.535990 | 4.3:+83600511 | MS.gene060844:CDS |
| AAGTTGAAAGTATTAAACTT+GGG | 0.557845 | 4.3:+83600207 | MS.gene060844:CDS |
| GCATGTTTAGCTCATTTGAA+AGG | 0.558223 | 4.3:+83600249 | MS.gene060844:CDS |
| CAAGTTAACAAGACCAGAGA+AGG | 0.565092 | 4.3:-83597628 | None:intergenic |
| TAAGATTGGTGATGAAGGAT+TGG | 0.567788 | 4.3:+83600498 | MS.gene060844:CDS |
| TTGCCCTCTTAAATTTGGAA+GGG | 0.576199 | 4.3:+83599100 | MS.gene060844:CDS |
| AACTTGGGATTTAATGACAT+AGG | 0.577016 | 4.3:+83600222 | MS.gene060844:CDS |
| ACAGTGCCTCCATGAATCCC+AGG | 0.590376 | 4.3:-83597675 | None:intergenic |
| TGGATTTGGAGAGATGTCCT+GGG | 0.594319 | 4.3:+83597658 | MS.gene060844:CDS |
| ACACCCTTCCAAATTTAAGA+GGG | 0.605875 | 4.3:-83599103 | None:intergenic |
| GATGCAATATTTCTGACAGA+GGG | 0.606799 | 4.3:+83600012 | MS.gene060844:CDS |
| TGGAATCTCTCAATATGAAG+TGG | 0.616270 | 4.3:+83597956 | MS.gene060844:CDS |
| AGATGCAATATTTCTGACAG+AGG | 0.657280 | 4.3:+83600011 | MS.gene060844:CDS |
| AGATGTCCTGGGATTCATGG+AGG | 0.711361 | 4.3:+83597669 | MS.gene060844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAAGTAAGAAAAATAT+CGG | + | chr4.3:83599420-83599439 | MS.gene060844:intron | 15.0% |
| !! | ATTCTTAGAAAATATTACTA+AGG | + | chr4.3:83598924-83598943 | MS.gene060844:intron | 15.0% |
| !! | GTATAATTACATAATTTACA+GGG | + | chr4.3:83600088-83600107 | MS.gene060844:intron | 15.0% |
| !! | TAATGCTAATAAAAAAGAAA+AGG | - | chr4.3:83599620-83599639 | None:intergenic | 15.0% |
| !!! | AAAATTTTGTTTCCAATATT+GGG | + | chr4.3:83599564-83599583 | MS.gene060844:intron | 15.0% |
| !!! | TTCATTTAAATTAGTTTTCT+CGG | + | chr4.3:83599494-83599513 | MS.gene060844:intron | 15.0% |
| !! | ACTTAAGTAAGAAAAATATC+GGG | + | chr4.3:83599421-83599440 | MS.gene060844:intron | 20.0% |
| !! | ATAACTTCAATCAAACTATT+TGG | + | chr4.3:83597907-83597926 | MS.gene060844:intron | 20.0% |
| !! | ATAGGAATTGTATTTGAAAA+TGG | + | chr4.3:83600399-83600418 | MS.gene060844:intron | 20.0% |
| !! | ATATTAAATCAAAACTCCAA+TGG | - | chr4.3:83599941-83599960 | None:intergenic | 20.0% |
| !! | GGTATAATTACATAATTTAC+AGG | + | chr4.3:83600087-83600106 | MS.gene060844:intron | 20.0% |
| !! | TATTAAATCAAAACTCCAAT+GGG | - | chr4.3:83599940-83599959 | None:intergenic | 20.0% |
| !!! | AAACTTTTTTGTTTACACAA+AGG | - | chr4.3:83597729-83597748 | None:intergenic | 20.0% |
| !!! | AAAGTTGAAAGTATTAAACT+TGG | + | chr4.3:83600206-83600225 | MS.gene060844:CDS | 20.0% |
| !!! | AAATTTTGTTTCCAATATTG+GGG | + | chr4.3:83599565-83599584 | MS.gene060844:intron | 20.0% |
| !!! | AAGTTGAAAGTATTAAACTT+GGG | + | chr4.3:83600207-83600226 | MS.gene060844:CDS | 20.0% |
| !!! | ACTTATGTATATTTTTAAGC+AGG | + | chr4.3:83600439-83600458 | MS.gene060844:intron | 20.0% |
| !!! | AGTTATGAAGAAATCAATTT+TGG | - | chr4.3:83597893-83597912 | None:intergenic | 20.0% |
| !!! | CAAAATTTTGTTTCCAATAT+TGG | + | chr4.3:83599563-83599582 | MS.gene060844:intron | 20.0% |
| !!! | CAATATTGGAAACAAAATTT+TGG | - | chr4.3:83599565-83599584 | None:intergenic | 20.0% |
| !!! | TCATTTAAATTAGTTTTCTC+GGG | + | chr4.3:83599495-83599514 | MS.gene060844:intron | 20.0% |
| ! | AAGAAAAGGTTAATACTGTA+TGG | - | chr4.3:83599606-83599625 | None:intergenic | 25.0% |
| ! | AAGAAGACAATAACCTAAAT+AGG | - | chr4.3:83598132-83598151 | None:intergenic | 25.0% |
| ! | AATACTGTATGGACAATATT+GGG | - | chr4.3:83599595-83599614 | None:intergenic | 25.0% |
| ! | AATTGCACTAAATTCTTGTT+AGG | + | chr4.3:83599224-83599243 | MS.gene060844:intron | 25.0% |
| ! | ACAAACTACTGGTAAAATAA+CGG | + | chr4.3:83600340-83600359 | MS.gene060844:intron | 25.0% |
| ! | ATAGGCTTAAAATTCTATGA+AGG | - | chr4.3:83599171-83599190 | None:intergenic | 25.0% |
| ! | CATAACAAAATAACCAGAAT+AGG | - | chr4.3:83599189-83599208 | None:intergenic | 25.0% |
| ! | CTTAAGTAAGAAAAATATCG+GGG | + | chr4.3:83599422-83599441 | MS.gene060844:intron | 25.0% |
| ! | TAATACTGTATGGACAATAT+TGG | - | chr4.3:83599596-83599615 | None:intergenic | 25.0% |
| ! | TGGCATATAATAACTTAATG+AGG | + | chr4.3:83599906-83599925 | MS.gene060844:intron | 25.0% |
| ! | TTGTCATAGAAATATTTGTG+TGG | + | chr4.3:83599458-83599477 | MS.gene060844:intron | 25.0% |
| ! | TTTGAAGGTTGTATAATAAC+TGG | - | chr4.3:83597787-83597806 | None:intergenic | 25.0% |
| !! | ATAGAATTTTAAGCCTATTC+TGG | + | chr4.3:83599173-83599192 | MS.gene060844:intron | 25.0% |
| !! | ATTGTCTTACACTAGTTTAT+AGG | + | chr4.3:83598586-83598605 | MS.gene060844:intron | 25.0% |
| !!! | ATGTTTAGCTTGAAACAAAA+AGG | + | chr4.3:83598677-83598696 | MS.gene060844:intron | 25.0% |
| !!! | ATTCTAAAGCTAATTCTTTC+AGG | + | chr4.3:83600065-83600084 | MS.gene060844:intron | 25.0% |
| !!! | CTATTTGGTTCATATTTTTC+AGG | + | chr4.3:83597922-83597941 | MS.gene060844:intron | 25.0% |
| !!! | TTCTAAAGCTAATTCTTTCA+GGG | + | chr4.3:83600066-83600085 | MS.gene060844:intron | 25.0% |
| !!! | TTTTTTTTTCCTTTCTTCAC+TGG | + | chr4.3:83599299-83599318 | MS.gene060844:intron | 25.0% |
| AAATAGGAACTATTCAGTAG+TGG | - | chr4.3:83598116-83598135 | None:intergenic | 30.0% | |
| AAATCTCGAAAACAAAGCAT+TGG | - | chr4.3:83598069-83598088 | None:intergenic | 30.0% | |
| AACCAAGACAACATTGAAAA+CGG | - | chr4.3:83599060-83599079 | None:intergenic | 30.0% | |
| AACCTGAAATTTCCTTTAAC+AGG | - | chr4.3:83599008-83599027 | None:intergenic | 30.0% | |
| AACCTTGATTCATGTAAGAT+TGG | + | chr4.3:83600484-83600503 | MS.gene060844:CDS | 30.0% | |
| AACTTGGGATTTAATGACAT+AGG | + | chr4.3:83600222-83600241 | MS.gene060844:CDS | 30.0% | |
| AAGCTGAAACACTGTTTAAT+AGG | + | chr4.3:83599340-83599359 | MS.gene060844:intron | 30.0% | |
| ACCAATGATTTGAAGGTAAT+AGG | - | chr4.3:83598960-83598979 | None:intergenic | 30.0% | |
| ACTTATTCTGTACAAACTAC+TGG | + | chr4.3:83600329-83600348 | MS.gene060844:intron | 30.0% | |
| AGATAGTTCAGTTGAAGATT+CGG | - | chr4.3:83598710-83598729 | None:intergenic | 30.0% | |
| AGTTATTGTAGGAATGTTGA+TGG | + | chr4.3:83600150-83600169 | MS.gene060844:intron | 30.0% | |
| ATACTGTATGGACAATATTG+GGG | - | chr4.3:83599594-83599613 | None:intergenic | 30.0% | |
| ATTTCCTTTAACAGGTAAAG+AGG | - | chr4.3:83599000-83599019 | None:intergenic | 30.0% | |
| CATTCCTACAATAACTGTTT+CGG | - | chr4.3:83600146-83600165 | None:intergenic | 30.0% | |
| CTACTGAATAGTTCCTATTT+AGG | + | chr4.3:83598116-83598135 | MS.gene060844:intron | 30.0% | |
| GTAACTTAATGATGTCTTTC+TGG | + | chr4.3:83599886-83599905 | MS.gene060844:intron | 30.0% | |
| TACCTGTTAAAGGAAATTTC+AGG | + | chr4.3:83599003-83599022 | MS.gene060844:intron | 30.0% | |
| TGAAGTTCATCAAAGAACAT+TGG | - | chr4.3:83597758-83597777 | None:intergenic | 30.0% | |
| TGCTAGAGTAGAATAAAGAT+AGG | + | chr4.3:83600381-83600400 | MS.gene060844:intron | 30.0% | |
| TGTCTGAAAAGTAAAGCTTT+GGG | + | chr4.3:83597828-83597847 | MS.gene060844:intron | 30.0% | |
| TTAAGCAGGATTGACAAAAT+TGG | + | chr4.3:83600453-83600472 | MS.gene060844:intron | 30.0% | |
| TTGTCATCTTCTTAGACATA+TGG | + | chr4.3:83598300-83598319 | MS.gene060844:intron | 30.0% | |
| TTGTCTGAAAAGTAAAGCTT+TGG | + | chr4.3:83597827-83597846 | MS.gene060844:intron | 30.0% | |
| ! | AAAGCATTCACAAGACAATA+AGG | - | chr4.3:83599268-83599287 | None:intergenic | 30.0% |
| ! | AACCTTAATGCTTTTACGAA+AGG | + | chr4.3:83599537-83599556 | MS.gene060844:intron | 30.0% |
| ! | ATAATTTACAGGGTGCTTAT+TGG | + | chr4.3:83600098-83600117 | MS.gene060844:intron | 30.0% |
| ! | GATATTTCGAATTTGCTTTC+TGG | - | chr4.3:83598903-83598922 | None:intergenic | 30.0% |
| ! | TAATTTACAGGGTGCTTATT+GGG | + | chr4.3:83600099-83600118 | MS.gene060844:intron | 30.0% |
| !! | ACAAAGCATTGGTAAATTTC+TGG | - | chr4.3:83598058-83598077 | None:intergenic | 30.0% |
| !! | ATTTACCTTGGTTCTTTTAC+AGG | + | chr4.3:83600177-83600196 | MS.gene060844:intron | 30.0% |
| !! | TTCCTTTCGTAAAAGCATTA+AGG | - | chr4.3:83599542-83599561 | None:intergenic | 30.0% |
| !! | TTCGTAAAAGCATTAAGGTT+TGG | - | chr4.3:83599537-83599556 | None:intergenic | 30.0% |
| !!! | TGGGATCTACATTTTGTTTT+TGG | + | chr4.3:83600118-83600137 | MS.gene060844:intron | 30.0% |
| !!! | TGTAGTAAAGTCACTGATTT+TGG | + | chr4.3:83598491-83598510 | MS.gene060844:CDS | 30.0% |
| !!! | TTAAATTAGTTTTCTCGGGT+GGG | + | chr4.3:83599499-83599518 | MS.gene060844:intron | 30.0% |
| !!! | TTTAAATTAGTTTTCTCGGG+TGG | + | chr4.3:83599498-83599517 | MS.gene060844:intron | 30.0% |
| !!! | TTTTTCAGGTCTAACTAAGT+TGG | + | chr4.3:83597936-83597955 | MS.gene060844:intron | 30.0% |
| AAGTAAGAAAAATATCGGGG+AGG | + | chr4.3:83599425-83599444 | MS.gene060844:intron | 35.0% | |
| AATGAGGATGTAATACCCAT+TGG | + | chr4.3:83599922-83599941 | MS.gene060844:intron | 35.0% | |
| ACACCCTTCCAAATTTAAGA+GGG | - | chr4.3:83599106-83599125 | None:intergenic | 35.0% | |
| ACCTGATAAAGGCTTCATAT+CGG | - | chr4.3:83598001-83598020 | None:intergenic | 35.0% | |
| AGATGCAACAAACCTGATAA+AGG | - | chr4.3:83598012-83598031 | None:intergenic | 35.0% | |
| ATAGTTCAGTTGAAGATTCG+GGG | - | chr4.3:83598708-83598727 | None:intergenic | 35.0% | |
| CACCAATCTTACATGAATCA+AGG | - | chr4.3:83600489-83600508 | None:intergenic | 35.0% | |
| CACTCCTTGAGTCATTAAAA+TGG | + | chr4.3:83599771-83599790 | MS.gene060844:intron | 35.0% | |
| CATTCACACCAATGATTTGA+AGG | - | chr4.3:83598967-83598986 | None:intergenic | 35.0% | |
| CTTGAGTCATTAAAATGGAG+AGG | + | chr4.3:83599776-83599795 | MS.gene060844:intron | 35.0% | |
| GATAGTTCAGTTGAAGATTC+GGG | - | chr4.3:83598709-83598728 | None:intergenic | 35.0% | |
| GATGAGTGAACTTTGTTGAT+TGG | + | chr4.3:83599852-83599871 | MS.gene060844:intron | 35.0% | |
| GCCTATTACCTTCAAATCAT+TGG | + | chr4.3:83598956-83598975 | MS.gene060844:intron | 35.0% | |
| GCTTACGCAGTTATAAATTG+AGG | - | chr4.3:83598864-83598883 | None:intergenic | 35.0% | |
| TACTGTATGGACAATATTGG+GGG | - | chr4.3:83599593-83599612 | None:intergenic | 35.0% | |
| TACTTAAGTTCAACGAGTAG+TGG | - | chr4.3:83599410-83599429 | None:intergenic | 35.0% | |
| TAGCTCATTTGAAAGGTGAT+TGG | + | chr4.3:83600256-83600275 | MS.gene060844:intron | 35.0% | |
| TAGTAATCGTAATCAGCTGT+TGG | + | chr4.3:83599673-83599692 | MS.gene060844:intron | 35.0% | |
| TGAAACATCACAATAAGGCA+AGG | - | chr4.3:83598547-83598566 | None:intergenic | 35.0% | |
| TGCTGTGAAACATCACAATA+AGG | - | chr4.3:83598552-83598571 | None:intergenic | 35.0% | |
| TGGAAAATACACCAACATCA+TGG | - | chr4.3:83598096-83598115 | None:intergenic | 35.0% | |
| TGGAATCTCTCAATATGAAG+TGG | + | chr4.3:83597956-83597975 | MS.gene060844:CDS | 35.0% | |
| TTGCCCTCTTAAATTTGGAA+GGG | + | chr4.3:83599100-83599119 | MS.gene060844:CDS | 35.0% | |
| ! | AGATGCAATATTTCTGACAG+AGG | + | chr4.3:83600011-83600030 | MS.gene060844:CDS | 35.0% |
| ! | CACACAAGCATATCTTTTGA+AGG | - | chr4.3:83597802-83597821 | None:intergenic | 35.0% |
| ! | GAGATTTTCTTCCATGATGT+TGG | + | chr4.3:83598082-83598101 | MS.gene060844:intron | 35.0% |
| ! | GATGCAATATTTCTGACAGA+GGG | + | chr4.3:83600012-83600031 | MS.gene060844:CDS | 35.0% |
| ! | GCATGTTTAGCTCATTTGAA+AGG | + | chr4.3:83600249-83600268 | MS.gene060844:CDS | 35.0% |
| ! | TCTTGTTAACTTGGTCAAGT+TGG | + | chr4.3:83597638-83597657 | MS.gene060844:CDS | 35.0% |
| ! | TGCATCCTTTTGATCACAAT+AGG | + | chr4.3:83598032-83598051 | MS.gene060844:intron | 35.0% |
| ! | TTCCGTTTTCAATGTTGTCT+TGG | + | chr4.3:83599055-83599074 | MS.gene060844:intron | 35.0% |
| ! | TTTGGCATCAGTTTTCTAAG+AGG | + | chr4.3:83598509-83598528 | MS.gene060844:CDS | 35.0% |
| !! | CTCTCCATTTTAATGACTCA+AGG | - | chr4.3:83599778-83599797 | None:intergenic | 35.0% |
| !! | GTTGATGGTAACATTTACCT+TGG | + | chr4.3:83600165-83600184 | MS.gene060844:intron | 35.0% |
| !! | TAACTTGGTCAAGTTGGATT+TGG | + | chr4.3:83597644-83597663 | MS.gene060844:CDS | 35.0% |
| !! | TAAGATTGGTGATGAAGGAT+TGG | + | chr4.3:83600498-83600517 | MS.gene060844:CDS | 35.0% |
| !! | TCATGTAAGATTGGTGATGA+AGG | + | chr4.3:83600493-83600512 | MS.gene060844:CDS | 35.0% |
| AACTTGGGTGGAATATGAGT+GGG | - | chr4.3:83598163-83598182 | None:intergenic | 40.0% | |
| ATGTTGTCTTGGTTCATTCC+AGG | + | chr4.3:83599066-83599085 | MS.gene060844:intron | 40.0% | |
| CAAATCATTGGTGTGAATGC+AGG | + | chr4.3:83598968-83598987 | MS.gene060844:intron | 40.0% | |
| CAAGTTAACAAGACCAGAGA+AGG | - | chr4.3:83597631-83597650 | None:intergenic | 40.0% | |
| CACTCAATGCCTTTCAACTT+GGG | - | chr4.3:83598178-83598197 | None:intergenic | 40.0% | |
| CATGCACAGAGACAAGTATA+TGG | - | chr4.3:83598262-83598281 | None:intergenic | 40.0% | |
| CTTGCCCTCTTAAATTTGGA+AGG | + | chr4.3:83599099-83599118 | MS.gene060844:CDS | 40.0% | |
| CTTGTCAAGCTTGTAAGTTC+TGG | - | chr4.3:83598366-83598385 | None:intergenic | 40.0% | |
| GAAGCTTGCCCTCTTAAATT+TGG | + | chr4.3:83599095-83599114 | MS.gene060844:CDS | 40.0% | |
| GACACCCTTCCAAATTTAAG+AGG | - | chr4.3:83599107-83599126 | None:intergenic | 40.0% | |
| GCAAGGGTTGGAGAAATAAA+AGG | - | chr4.3:83599728-83599747 | None:intergenic | 40.0% | |
| GGGTTGGAGAAATAAAAGGT+TGG | - | chr4.3:83599724-83599743 | None:intergenic | 40.0% | |
| TCACTCAATGCCTTTCAACT+TGG | - | chr4.3:83598179-83598198 | None:intergenic | 40.0% | |
| TCCGATATGAAGCCTTTATC+AGG | + | chr4.3:83597997-83598016 | MS.gene060844:CDS | 40.0% | |
| TCGTAATCAGCTGTTGGAAA+TGG | + | chr4.3:83599679-83599698 | MS.gene060844:intron | 40.0% | |
| TCTGGCCTATTGTGATCAAA+AGG | - | chr4.3:83598040-83598059 | None:intergenic | 40.0% | |
| TCTTGTAACATCTGCATGCT+TGG | + | chr4.3:83599125-83599144 | MS.gene060844:CDS | 40.0% | |
| TGCACCTCTTTACCTGTTAA+AGG | + | chr4.3:83598993-83599012 | MS.gene060844:intron | 40.0% | |
| TGCTCAAATCAGAATCTGCT+TGG | - | chr4.3:83599385-83599404 | None:intergenic | 40.0% | |
| ! | AGATTCAAGTTTGACAGTGC+AGG | - | chr4.3:83599987-83600006 | None:intergenic | 40.0% |
| ! | CATATTCCACCCAAGTTGAA+AGG | + | chr4.3:83598166-83598185 | MS.gene060844:intron | 40.0% |
| ! | GATTCAAGTTTGACAGTGCA+GGG | - | chr4.3:83599986-83600005 | None:intergenic | 40.0% |
| ! | TGATGAAGGATTGGTGAACT+TGG | + | chr4.3:83600507-83600526 | MS.gene060844:CDS | 40.0% |
| !! | CTTCTCTGGTCTTGTTAACT+TGG | + | chr4.3:83597629-83597648 | MS.gene060844:CDS | 40.0% |
| !! | GCACTGTTCATTTTCAAGGT+TGG | + | chr4.3:83597691-83597710 | MS.gene060844:intron | 40.0% |
| AGCACTCAACCAGTGAAGAA+AGG | - | chr4.3:83599311-83599330 | None:intergenic | 45.0% | |
| AGCTGTTGGAAATGGTAGTC+GGG | + | chr4.3:83599687-83599706 | MS.gene060844:intron | 45.0% | |
| AGGAGTGACAAGACAGTTTG+AGG | - | chr4.3:83599758-83599777 | None:intergenic | 45.0% | |
| CAACTTGGGTGGAATATGAG+TGG | - | chr4.3:83598164-83598183 | None:intergenic | 45.0% | |
| CAGCTGTTGGAAATGGTAGT+CGG | + | chr4.3:83599686-83599705 | MS.gene060844:intron | 45.0% | |
| CCAGTCCTGTAAAAGAACCA+AGG | - | chr4.3:83600185-83600204 | None:intergenic | 45.0% | |
| CTTGTCAAGCTTGCAAGTTC+TGG | - | chr4.3:83598458-83598477 | None:intergenic | 45.0% | |
| GCATGCTTGGATTCACTTTC+AGG | + | chr4.3:83599138-83599157 | MS.gene060844:CDS | 45.0% | |
| GGAGTGACAAGACAGTTTGA+GGG | - | chr4.3:83599757-83599776 | None:intergenic | 45.0% | |
| GGCTCCGAAACAGTTATTGT+AGG | + | chr4.3:83600139-83600158 | MS.gene060844:intron | 45.0% | |
| TCAATGCCTTTCAACTTGGG+TGG | - | chr4.3:83598175-83598194 | None:intergenic | 45.0% | |
| TGGATTTGGAGAGATGTCCT+GGG | + | chr4.3:83597658-83597677 | MS.gene060844:CDS | 45.0% | |
| TTGGATTTGGAGAGATGTCC+TGG | + | chr4.3:83597657-83597676 | MS.gene060844:CDS | 45.0% | |
| ! | TTTCTGACAGAGGGTGTGAT+AGG | + | chr4.3:83600021-83600040 | MS.gene060844:CDS | 45.0% |
| !! | CCTTGGTTCTTTTACAGGAC+TGG | + | chr4.3:83600182-83600201 | MS.gene060844:intron | 45.0% |
| !!! | GGAGGCACTGTTCATTTTCA+AGG | + | chr4.3:83597687-83597706 | MS.gene060844:CDS | 45.0% |
| AGATGTCCTGGGATTCATGG+AGG | + | chr4.3:83597669-83597688 | MS.gene060844:CDS | 50.0% | |
| AGGGCAAGCTTCTGTAATCC+TGG | - | chr4.3:83599087-83599106 | None:intergenic | 50.0% | |
| GAGAGATGTCCTGGGATTCA+TGG | + | chr4.3:83597666-83597685 | MS.gene060844:CDS | 50.0% | |
| GCTGTTGGAAATGGTAGTCG+GGG | + | chr4.3:83599688-83599707 | MS.gene060844:intron | 50.0% | |
| GTGACAAGACAGTTTGAGGG+AGG | - | chr4.3:83599754-83599773 | None:intergenic | 50.0% | |
| ! | AGTTTGAGGGAGGAGTGCAA+GGG | - | chr4.3:83599744-83599763 | None:intergenic | 50.0% |
| ACAGTGCCTCCATGAATCCC+AGG | - | chr4.3:83597678-83597697 | None:intergenic | 55.0% | |
| TTCTCGGGTGGGAGAGTAGT+GGG | + | chr4.3:83599510-83599529 | MS.gene060844:intron | 55.0% | |
| TTTCTCGGGTGGGAGAGTAG+TGG | + | chr4.3:83599509-83599528 | MS.gene060844:intron | 55.0% | |
| TTTGACAGTGCAGGGAGCTC+TGG | - | chr4.3:83599978-83599997 | None:intergenic | 55.0% | |
| ! | CAGTTTGAGGGAGGAGTGCA+AGG | - | chr4.3:83599745-83599764 | None:intergenic | 55.0% |
| !! | TATTGGGGGCGCCCCAATAT+TGG | - | chr4.3:83599579-83599598 | None:intergenic | 55.0% |
| ! | TGAGGGAGGAGTGCAAGGGT+TGG | - | chr4.3:83599740-83599759 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 83597621 | 83600532 | 83597621 | ID=MS.gene060844 |
| chr4.3 | mRNA | 83597621 | 83600532 | 83597621 | ID=MS.gene060844.t1;Parent=MS.gene060844 |
| chr4.3 | exon | 83597621 | 83597708 | 83597621 | ID=MS.gene060844.t1.exon1;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83597621 | 83597708 | 83597621 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| chr4.3 | exon | 83597944 | 83598018 | 83597944 | ID=MS.gene060844.t1.exon2;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83597944 | 83598018 | 83597944 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| chr4.3 | exon | 83598459 | 83598530 | 83598459 | ID=MS.gene060844.t1.exon3;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83598459 | 83598530 | 83598459 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| chr4.3 | exon | 83599088 | 83599159 | 83599088 | ID=MS.gene060844.t1.exon4;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83599088 | 83599159 | 83599088 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| chr4.3 | exon | 83599979 | 83600050 | 83599979 | ID=MS.gene060844.t1.exon5;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83599979 | 83600050 | 83599979 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| chr4.3 | exon | 83600199 | 83600270 | 83600199 | ID=MS.gene060844.t1.exon6;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83600199 | 83600270 | 83600199 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| chr4.3 | exon | 83600461 | 83600532 | 83600461 | ID=MS.gene060844.t1.exon7;Parent=MS.gene060844.t1 |
| chr4.3 | CDS | 83600461 | 83600532 | 83600461 | ID=cds.MS.gene060844.t1;Parent=MS.gene060844.t1 |
| Gene Sequence |
| Protein sequence |
