Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38555.t1 | XP_003602887.2 | 97.5 | 197 | 5 | 0 | 1 | 197 | 163 | 359 | 5.20E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38555.t1 | Q8GXL7 | 58.6 | 87 | 31 | 2 | 1 | 82 | 175 | 261 | 3.1e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38555.t1 | A0A072V126 | 97.5 | 197 | 5 | 0 | 1 | 197 | 59 | 255 | 3.7e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38555.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene38555 | 0.801348 | 9.39E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene38555 | 0.803609 | 3.21E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene38555 | 0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene38555 | 0.831991 | 1.22E-55 | -1.69E-46 |
| MS.gene053166 | MS.gene38555 | 0.823294 | 1.50E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene38555 | 0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene38555 | 0.817499 | 3.20E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene38555 | 0.80082 | 1.20E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene38555 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene38555 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene060844 | MS.gene38555 | 0.800282 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38555.t1 | MTR_3g100040 | 97.462 | 197 | 5 | 0 | 1 | 197 | 59 | 255 | 3.03e-140 | 391 |
| MS.gene38555.t1 | MTR_3g100040 | 97.462 | 197 | 5 | 0 | 1 | 197 | 163 | 359 | 1.09e-139 | 394 |
| MS.gene38555.t1 | MTR_3g060200 | 52.273 | 176 | 71 | 4 | 1 | 165 | 10 | 183 | 3.66e-47 | 157 |
| MS.gene38555.t1 | MTR_3g060200 | 52.727 | 165 | 57 | 2 | 1 | 145 | 11 | 174 | 5.30e-46 | 156 |
| MS.gene38555.t1 | MTR_3g060200 | 53.614 | 166 | 55 | 3 | 1 | 145 | 10 | 174 | 6.88e-46 | 156 |
| MS.gene38555.t1 | MTR_3g060200 | 52.727 | 165 | 57 | 2 | 1 | 145 | 11 | 174 | 6.08e-45 | 156 |
| MS.gene38555.t1 | MTR_4g093730 | 38.571 | 210 | 86 | 7 | 1 | 197 | 140 | 319 | 3.85e-33 | 121 |
| MS.gene38555.t1 | MTR_5g066510 | 55.319 | 94 | 36 | 2 | 1 | 91 | 167 | 257 | 3.40e-27 | 104 |
| MS.gene38555.t1 | MTR_3g100050 | 56.977 | 86 | 34 | 1 | 1 | 86 | 164 | 246 | 9.77e-27 | 103 |
| MS.gene38555.t1 | MTR_4g008070 | 42.708 | 96 | 46 | 3 | 1 | 89 | 1 | 94 | 1.49e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38555.t1 | AT1G51600 | 51.000 | 100 | 40 | 2 | 1 | 91 | 179 | 278 | 2.56e-25 | 100 |
| MS.gene38555.t1 | AT1G51600 | 51.000 | 100 | 40 | 2 | 1 | 91 | 179 | 278 | 2.56e-25 | 100 |
| MS.gene38555.t1 | AT3G21175 | 58.621 | 87 | 31 | 2 | 1 | 82 | 175 | 261 | 3.77e-25 | 99.4 |
| MS.gene38555.t1 | AT3G21175 | 58.621 | 87 | 31 | 2 | 1 | 82 | 173 | 259 | 4.14e-25 | 99.4 |
| MS.gene38555.t1 | AT4G24470 | 56.098 | 82 | 33 | 2 | 1 | 82 | 178 | 256 | 1.12e-23 | 95.9 |
| MS.gene38555.t1 | AT4G24470 | 56.098 | 82 | 33 | 2 | 1 | 82 | 178 | 256 | 1.12e-23 | 95.9 |
| MS.gene38555.t1 | AT4G24470 | 56.098 | 82 | 33 | 2 | 1 | 82 | 178 | 256 | 1.23e-23 | 95.9 |
Find 62 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAACTCACAGAGATTC+AGG | 0.223095 | 3.2:+83051996 | None:intergenic |
| CATGCATTGCACAAAGTTCT+TGG | 0.241152 | 3.2:+83051824 | None:intergenic |
| GATACAGATATTGACATTCC+TGG | 0.340740 | 3.2:-83049545 | MS.gene38555:CDS |
| GCTGGTCCGCGACGCATTGC+AGG | 0.357972 | 3.2:+83051851 | None:intergenic |
| ATTGGTAATTTGTCATTCTT+CGG | 0.372377 | 3.2:-83049877 | MS.gene38555:CDS |
| ACCAGACGACTTTGCTCAAC+AGG | 0.377857 | 3.2:+83051139 | None:intergenic |
| ACCTTCTAATCAAAGTTTCC+AGG | 0.390784 | 3.2:+83049527 | None:intergenic |
| TGCTAGGATGCATCGGGAAA+AGG | 0.402415 | 3.2:-83052102 | None:intergenic |
| ACTCACAGAGATTCAGGATT+AGG | 0.406041 | 3.2:+83052002 | None:intergenic |
| ACAGTTGGCTTGACATCAAC+AGG | 0.416226 | 3.2:+83050238 | None:intergenic |
| GCTAGGATGCATCGGGAAAA+GGG | 0.419663 | 3.2:-83052101 | None:intergenic |
| GGAACCAGGGCTTTGCTTCA+AGG | 0.426853 | 3.2:+83052067 | None:intergenic |
| CACAAAGTTCTTGGTCCAGC+TGG | 0.446059 | 3.2:+83051833 | None:intergenic |
| GCAATGCATGCGGCCTCATG+TGG | 0.449902 | 3.2:-83051811 | MS.gene38555:CDS |
| CTCTAGTTGGAATTCAGCAC+AGG | 0.449996 | 3.2:-83052045 | MS.gene38555:CDS |
| GTCAAGCCAACTGTTCTTGA+AGG | 0.454609 | 3.2:-83050229 | MS.gene38555:CDS |
| ATTTCTTGCTAGGATGCATC+GGG | 0.457873 | 3.2:-83052108 | None:intergenic |
| CTTTCTAATCCTTCAGATGC+AGG | 0.461274 | 3.2:-83049584 | MS.gene38555:CDS |
| GCAATGCGTCGCGGACCAGC+TGG | 0.462401 | 3.2:-83051848 | MS.gene38555:CDS |
| AGCAAAATGACCAACCTTGT+TGG | 0.463402 | 3.2:+83051787 | None:intergenic |
| TCCTGTTGAGCAAAGTCGTC+TGG | 0.466212 | 3.2:-83051140 | MS.gene38555:intron |
| ACCTTCCGCACCAACAGTCT+TGG | 0.467444 | 3.2:+83050075 | None:intergenic |
| TCCAAGACTGTTGGTGCGGA+AGG | 0.498699 | 3.2:-83050076 | MS.gene38555:CDS |
| AAAGCCCTGGTTCCTCTAGT+TGG | 0.498939 | 3.2:-83052058 | MS.gene38555:CDS |
| CGGCCTCATGTGGGCCAACA+AGG | 0.505964 | 3.2:-83051801 | MS.gene38555:intron |
| GAACCAGGGCTTTGCTTCAA+GGG | 0.507428 | 3.2:+83052068 | None:intergenic |
| TATTTCTTGCTAGGATGCAT+CGG | 0.512222 | 3.2:-83052109 | None:intergenic |
| TTCGGAAAATGATGATGAGC+AGG | 0.513065 | 3.2:-83049859 | MS.gene38555:intron |
| TTAGACATTCCTGCATCTGA+AGG | 0.515486 | 3.2:+83049575 | None:intergenic |
| AATTCCCCTTCAAGAACAGT+TGG | 0.521168 | 3.2:+83050223 | None:intergenic |
| TGGAATTCAGCACAGGGTGC+TGG | 0.521463 | 3.2:-83052038 | MS.gene38555:CDS |
| GAAGAACCTTCCAAGACTGT+TGG | 0.545293 | 3.2:-83050085 | MS.gene38555:CDS |
| GACACTCAGAGATCTCAGTA+AGG | 0.560391 | 3.2:-83051176 | MS.gene38555:CDS |
| GCACAGGGTGCTGGTCAAGA+TGG | 0.560830 | 3.2:-83052029 | MS.gene38555:CDS |
| GCACCCTTGAAGCAAAGCCC+TGG | 0.567134 | 3.2:-83052071 | MS.gene38555:CDS |
| ACTACAACTACCTCATCACC+AGG | 0.568839 | 3.2:+83050031 | None:intergenic |
| TCAAGCCAACTGTTCTTGAA+GGG | 0.572288 | 3.2:-83050228 | MS.gene38555:CDS |
| CTCAGAGATCTCAGTAAGGG+TGG | 0.581454 | 3.2:-83051172 | MS.gene38555:CDS |
| CAACCTTGTTGGCCCACATG+AGG | 0.589336 | 3.2:+83051798 | None:intergenic |
| TGCATCAAACCCTGGTGATG+AGG | 0.590145 | 3.2:-83050041 | MS.gene38555:intron |
| GAATTCCAACTAGAGGAACC+AGG | 0.591328 | 3.2:+83052053 | None:intergenic |
| CAATGCATGCGGCCTCATGT+GGG | 0.602828 | 3.2:-83051810 | MS.gene38555:CDS |
| ATGTCAATATCTGTATCTGA+AGG | 0.610986 | 3.2:+83049551 | None:intergenic |
| TCCGCACCAACAGTCTTGGA+AGG | 0.612491 | 3.2:+83050079 | None:intergenic |
| GAAGAATGACAAATTACCAA+TGG | 0.616321 | 3.2:+83049879 | None:intergenic |
| GGATTAGAAAGCTCGACCAC+GGG | 0.617309 | 3.2:+83049596 | None:intergenic |
| CAAGCCAACTGTTCTTGAAG+GGG | 0.619999 | 3.2:-83050227 | MS.gene38555:CDS |
| ACCTTCCAAGACTGTTGGTG+CGG | 0.622461 | 3.2:-83050080 | MS.gene38555:CDS |
| CTAGGATGCATCGGGAAAAG+GGG | 0.623092 | 3.2:-83052100 | None:intergenic |
| AGACGTAGATGTCAACATTG+TGG | 0.641093 | 3.2:-83051893 | MS.gene38555:CDS |
| AGGATTAGAAAGCTCGACCA+CGG | 0.642905 | 3.2:+83049595 | None:intergenic |
| AGAACTTTGTGCAATGCATG+CGG | 0.654215 | 3.2:-83051821 | MS.gene38555:CDS |
| CTGTGCTGAATTCCAACTAG+AGG | 0.664420 | 3.2:+83052046 | None:intergenic |
| AATACTCCTGCAATGCGTCG+CGG | 0.665782 | 3.2:-83051857 | MS.gene38555:CDS |
| ACACTCAGAGATCTCAGTAA+GGG | 0.666946 | 3.2:-83051175 | MS.gene38555:CDS |
| TCTAGTTGGAATTCAGCACA+GGG | 0.669194 | 3.2:-83052044 | MS.gene38555:CDS |
| AATGATCATGCATCAAACCC+TGG | 0.673623 | 3.2:-83050049 | MS.gene38555:CDS |
| AATTCCAACTAGAGGAACCA+GGG | 0.673882 | 3.2:+83052054 | None:intergenic |
| ATATGACCTACAGGAACCCG+TGG | 0.688581 | 3.2:-83049612 | MS.gene38555:intron |
| GTTGGCTTGACATCAACAGG+AGG | 0.690482 | 3.2:+83050241 | None:intergenic |
| TTGGCTTGACATCAACAGGA+GGG | 0.707354 | 3.2:+83050242 | None:intergenic |
| CTACAACTACCTCATCACCA+GGG | 0.715371 | 3.2:+83050032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTCTTTTAATTCAATTT+GGG | - | chr3.2:83051639-83051658 | MS.gene38555:intron | 10.0% |
| !!! | TTTATTCTTTTAATTCAATT+TGG | - | chr3.2:83051638-83051657 | MS.gene38555:intron | 10.0% |
| !! | ATATATTCATTACAAACTAT+TGG | - | chr3.2:83050640-83050659 | MS.gene38555:intron | 15.0% |
| !! | TATATTCATTACAAACTATT+GGG | - | chr3.2:83050641-83050660 | MS.gene38555:intron | 15.0% |
| !!! | CAAATAAACTTTTTTGAAAA+TGG | - | chr3.2:83051045-83051064 | MS.gene38555:intron | 15.0% |
| !!! | TATTCTTTTAATTCAATTTG+GGG | - | chr3.2:83051640-83051659 | MS.gene38555:intron | 15.0% |
| !!! | TATTTGAAAATGTTGATAAA+AGG | + | chr3.2:83051031-83051050 | None:intergenic | 15.0% |
| !! | AAATTTCATTCAAGATGAAA+GGG | + | chr3.2:83051359-83051378 | None:intergenic | 20.0% |
| !! | ATCAGAAATACAAAGTAATA+AGG | + | chr3.2:83050335-83050354 | None:intergenic | 20.0% |
| !! | GAAACATATTATCTTATCAA+TGG | - | chr3.2:83050699-83050718 | MS.gene38555:intron | 20.0% |
| !! | TCTATGACTTCATTAATAAA+AGG | + | chr3.2:83050885-83050904 | None:intergenic | 20.0% |
| !! | TTAAGTTTAGTAGAAAACTT+GGG | - | chr3.2:83051192-83051211 | MS.gene38555:intron | 20.0% |
| !! | TTCAAACTGGTTATTAAAAT+TGG | + | chr3.2:83050603-83050622 | None:intergenic | 20.0% |
| !!! | ATTCTTTTAATTCAATTTGG+GGG | - | chr3.2:83051641-83051660 | MS.gene38555:intron | 20.0% |
| !!! | ATTTTAAGTTGTTTTTAGAC+AGG | - | chr3.2:83050672-83050691 | MS.gene38555:intron | 20.0% |
| !!! | CTATTTGCATAAAACTTTTA+TGG | - | chr3.2:83051501-83051520 | MS.gene38555:intron | 20.0% |
| !!! | TATAGATCATCAATAACTTT+TGG | - | chr3.2:83050094-83050113 | MS.gene38555:CDS | 20.0% |
| ! | AAACTGGTTATTAAAATTGG+AGG | + | chr3.2:83050600-83050619 | None:intergenic | 25.0% |
| ! | ATGAACTAATTACCTGTTTA+TGG | - | chr3.2:83051073-83051092 | MS.gene38555:intron | 25.0% |
| ! | CAAATTTCATTCAAGATGAA+AGG | + | chr3.2:83051360-83051379 | None:intergenic | 25.0% |
| ! | GTTAAGTTTAGTAGAAAACT+TGG | - | chr3.2:83051191-83051210 | MS.gene38555:intron | 25.0% |
| ! | TAAGAGAGAATAATACAAGT+TGG | - | chr3.2:83050778-83050797 | MS.gene38555:intron | 25.0% |
| ! | TCAGCTGTAAACAATAAAAA+TGG | + | chr3.2:83050194-83050213 | None:intergenic | 25.0% |
| ! | TGTAAAAATCCCATGAAATA+AGG | - | chr3.2:83050910-83050929 | MS.gene38555:intron | 25.0% |
| ! | TTGTCATTCATTATCTTTCA+TGG | - | chr3.2:83050166-83050185 | MS.gene38555:intron | 25.0% |
| !! | AAAACCATTTGATTTCAAAC+TGG | + | chr3.2:83050616-83050635 | None:intergenic | 25.0% |
| !! | ATAACCAGTTTGAAATCAAA+TGG | - | chr3.2:83050609-83050628 | MS.gene38555:intron | 25.0% |
| !! | ATTGGTAATTTGTCATTCTT+CGG | - | chr3.2:83051750-83051769 | MS.gene38555:intron | 25.0% |
| !! | ATTTGCAATTGGCTTAATAA+AGG | + | chr3.2:83050553-83050572 | None:intergenic | 25.0% |
| !!! | AGATGTTGTATTTTGACTAT+AGG | - | chr3.2:83050283-83050302 | MS.gene38555:intron | 25.0% |
| !!! | AGTTTGAAATCAAATGGTTT+TGG | - | chr3.2:83050615-83050634 | MS.gene38555:intron | 25.0% |
| !!! | TCTGTGAGTTTTAAACATAT+TGG | - | chr3.2:83049639-83049658 | MS.gene38555:intron | 25.0% |
| AAATTTCCTGTAGTTCTTTG+TGG | - | chr3.2:83051144-83051163 | MS.gene38555:CDS | 30.0% | |
| AAGGCTGTTCAAAAATAAAC+TGG | + | chr3.2:83051284-83051303 | None:intergenic | 30.0% | |
| ATCTTAGATTCTTTAGTCAC+AGG | - | chr3.2:83050818-83050837 | MS.gene38555:intron | 30.0% | |
| ATGTCAATATCTGTATCTGA+AGG | + | chr3.2:83052079-83052098 | None:intergenic | 30.0% | |
| GAAGAATGACAAATTACCAA+TGG | + | chr3.2:83051751-83051770 | None:intergenic | 30.0% | |
| TCATCTTGAATGAAATTTGC+AGG | - | chr3.2:83051361-83051380 | MS.gene38555:intron | 30.0% | |
| TGACAATCAAAACCATAAAC+AGG | + | chr3.2:83051088-83051107 | None:intergenic | 30.0% | |
| ! | AAAACTTTTATGGTGTGTTC+AGG | - | chr3.2:83051511-83051530 | MS.gene38555:intron | 30.0% |
| ! | AAACTTTTATGGTGTGTTCA+GGG | - | chr3.2:83051512-83051531 | MS.gene38555:intron | 30.0% |
| ! | ACTGTGATACCTTATTTCAT+GGG | + | chr3.2:83050922-83050941 | None:intergenic | 30.0% |
| ! | TTTAAAACTCACAGAGATTC+AGG | + | chr3.2:83049634-83049653 | None:intergenic | 30.0% |
| !! | AAACATATTGGTTCTTGTGT+GGG | - | chr3.2:83049651-83049670 | MS.gene38555:intron | 30.0% |
| !! | TAAACATATTGGTTCTTGTG+TGG | - | chr3.2:83049650-83049669 | MS.gene38555:intron | 30.0% |
| !! | TTTCTCTGGTATTGACAAAT+GGG | - | chr3.2:83051675-83051694 | MS.gene38555:intron | 30.0% |
| !!! | AAGTTGTTTTTAGACAGGAA+AGG | - | chr3.2:83050677-83050696 | MS.gene38555:intron | 30.0% |
| !!! | TATGGTTTTGATGAAATGCT+TGG | - | chr3.2:83049869-83049888 | MS.gene38555:CDS | 30.0% |
| !!! | TTTTCTCTGGTATTGACAAA+TGG | - | chr3.2:83051674-83051693 | MS.gene38555:intron | 30.0% |
| AAAAACAACACCCAGTCTTT+CGG | - | chr3.2:83049991-83050010 | MS.gene38555:intron | 35.0% | |
| AATCTTCCACAAAGAACTAC+AGG | + | chr3.2:83051153-83051172 | None:intergenic | 35.0% | |
| AGAATGCAACAAACAAGTAC+AGG | + | chr3.2:83050359-83050378 | None:intergenic | 35.0% | |
| ATTGTTTACAGCTGAGACAA+TGG | - | chr3.2:83050199-83050218 | MS.gene38555:intron | 35.0% | |
| GATACAGATATTGACATTCC+TGG | - | chr3.2:83052082-83052101 | MS.gene38555:CDS | 35.0% | |
| TCTGCTTCTTAACTCTGATA+GGG | - | chr3.2:83050428-83050447 | MS.gene38555:intron | 35.0% | |
| TGACAAATGGGTATTTGTTC+AGG | - | chr3.2:83051687-83051706 | MS.gene38555:intron | 35.0% | |
| TTTGCCGATGAAACTTGAAA+TGG | - | chr3.2:83051899-83051918 | MS.gene38555:intron | 35.0% | |
| ! | CACAATTATTTTCCAGTAGC+TGG | - | chr3.2:83049925-83049944 | MS.gene38555:intron | 35.0% |
| ! | CACTGTGATACCTTATTTCA+TGG | + | chr3.2:83050923-83050942 | None:intergenic | 35.0% |
| ! | GAAATAAGGTATCACAGTGA+AGG | - | chr3.2:83050924-83050943 | MS.gene38555:intron | 35.0% |
| !! | AGCTCCATTTCAAGTTTCAT+CGG | + | chr3.2:83051906-83051925 | None:intergenic | 35.0% |
| !! | GGTCATTTTGCTAACAAGTA+TGG | - | chr3.2:83049851-83049870 | MS.gene38555:intron | 35.0% |
| !! | TTTTGATTGTCACGAAGAGA+TGG | - | chr3.2:83051096-83051115 | MS.gene38555:intron | 35.0% |
| !!! | AAGACTGGGTGTTGTTTTTT+TGG | + | chr3.2:83049990-83050009 | None:intergenic | 35.0% |
| !!! | AGACTGGGTGTTGTTTTTTT+GGG | + | chr3.2:83049989-83050008 | None:intergenic | 35.0% |
| !!! | TCAAGATGAAAGGGTGTTTT+AGG | + | chr3.2:83051350-83051369 | None:intergenic | 35.0% |
| AATGATCATGCATCAAACCC+TGG | - | chr3.2:83051578-83051597 | MS.gene38555:intron | 40.0% | |
| AATTCCAACTAGAGGAACCA+GGG | + | chr3.2:83049576-83049595 | None:intergenic | 40.0% | |
| AATTCCCCTTCAAGAACAGT+TGG | + | chr3.2:83051407-83051426 | None:intergenic | 40.0% | |
| ACAACATCTAATCCACCACT+GGG | + | chr3.2:83050272-83050291 | None:intergenic | 40.0% | |
| ACAATGTTGACATCTACGTC+TGG | + | chr3.2:83049735-83049754 | None:intergenic | 40.0% | |
| ACACTCAGAGATCTCAGTAA+GGG | - | chr3.2:83050452-83050471 | MS.gene38555:intron | 40.0% | |
| ACTCACAGAGATTCAGGATT+AGG | + | chr3.2:83049628-83049647 | None:intergenic | 40.0% | |
| AGAACTTTGTGCAATGCATG+CGG | - | chr3.2:83049806-83049825 | MS.gene38555:intron | 40.0% | |
| AGACGTAGATGTCAACATTG+TGG | - | chr3.2:83049734-83049753 | MS.gene38555:intron | 40.0% | |
| AGATGACAAATCCGAAAGAC+TGG | + | chr3.2:83050005-83050024 | None:intergenic | 40.0% | |
| AGCAAAATGACCAACCTTGT+TGG | + | chr3.2:83049843-83049862 | None:intergenic | 40.0% | |
| AGCCAATTGCAAATGCTAAG+TGG | - | chr3.2:83050559-83050578 | MS.gene38555:intron | 40.0% | |
| CATGCATTGCACAAAGTTCT+TGG | + | chr3.2:83049806-83049825 | None:intergenic | 40.0% | |
| CCTAACAAAAACACTGCCAT+TGG | - | chr3.2:83051732-83051751 | MS.gene38555:intron | 40.0% | |
| CTGCTTCTTAACTCTGATAG+GGG | - | chr3.2:83050429-83050448 | MS.gene38555:intron | 40.0% | |
| CTTTCTAATCCTTCAGATGC+AGG | - | chr3.2:83052043-83052062 | MS.gene38555:CDS | 40.0% | |
| GATGACAAATCCGAAAGACT+GGG | + | chr3.2:83050004-83050023 | None:intergenic | 40.0% | |
| GCCAATTGCAAATGCTAAGT+GGG | - | chr3.2:83050560-83050579 | MS.gene38555:intron | 40.0% | |
| GGATTAACTATAAAGCCCCA+GGG | + | chr3.2:83050242-83050261 | None:intergenic | 40.0% | |
| GTCTGCTTCTTAACTCTGAT+AGG | - | chr3.2:83050427-83050446 | MS.gene38555:intron | 40.0% | |
| TACAACATCTAATCCACCAC+TGG | + | chr3.2:83050273-83050292 | None:intergenic | 40.0% | |
| TCAAGCCAACTGTTCTTGAA+GGG | - | chr3.2:83051399-83051418 | MS.gene38555:intron | 40.0% | |
| TCCCACTTAGCATTTGCAAT+TGG | + | chr3.2:83050564-83050583 | None:intergenic | 40.0% | |
| TCTAGTTGGAATTCAGCACA+GGG | - | chr3.2:83049583-83049602 | MS.gene38555:CDS | 40.0% | |
| TCTTGCGTTTACAAGTGTAC+TGG | + | chr3.2:83051930-83051949 | None:intergenic | 40.0% | |
| TGAAAGAACTTGAGCCACAA+AGG | + | chr3.2:83051308-83051327 | None:intergenic | 40.0% | |
| TTAGACATTCCTGCATCTGA+AGG | + | chr3.2:83052055-83052074 | None:intergenic | 40.0% | |
| TTCATCGGCAAAGTTCAAGT+GGG | + | chr3.2:83051891-83051910 | None:intergenic | 40.0% | |
| TTTCATCGGCAAAGTTCAAG+TGG | + | chr3.2:83051892-83051911 | None:intergenic | 40.0% | |
| TTTGAACAGCCTTACCTTTG+TGG | - | chr3.2:83051291-83051310 | MS.gene38555:intron | 40.0% | |
| ! | ATGAGCCTTATATGACCTAC+AGG | - | chr3.2:83052006-83052025 | MS.gene38555:intron | 40.0% |
| ! | TATTTTCCAGTAGCTGGAGT+TGG | - | chr3.2:83049931-83049950 | MS.gene38555:intron | 40.0% |
| ! | TTCGGAAAATGATGATGAGC+AGG | - | chr3.2:83051768-83051787 | MS.gene38555:intron | 40.0% |
| !! | CCAATGGCAGTGTTTTTGTT+AGG | + | chr3.2:83051735-83051754 | None:intergenic | 40.0% |
| !!! | ATGAAAGGGTGTTTTAGGAC+TGG | + | chr3.2:83051345-83051364 | None:intergenic | 40.0% |
| ACTACAACTACCTCATCACC+AGG | + | chr3.2:83051599-83051618 | None:intergenic | 45.0% | |
| AGGATTAGAAAGCTCGACCA+CGG | + | chr3.2:83052035-83052054 | None:intergenic | 45.0% | |
| CAAGCCAACTGTTCTTGAAG+GGG | - | chr3.2:83051400-83051419 | MS.gene38555:intron | 45.0% | |
| CACAGTTCACACAACTATGC+TGG | - | chr3.2:83051842-83051861 | MS.gene38555:CDS | 45.0% | |
| CTACAACTACCTCATCACCA+GGG | + | chr3.2:83051598-83051617 | None:intergenic | 45.0% | |
| CTCTAGTTGGAATTCAGCAC+AGG | - | chr3.2:83049582-83049601 | MS.gene38555:CDS | 45.0% | |
| CTGTGCTGAATTCCAACTAG+AGG | + | chr3.2:83049584-83049603 | None:intergenic | 45.0% | |
| GAACTTGAGCCACAAAGGTA+AGG | + | chr3.2:83051303-83051322 | None:intergenic | 45.0% | |
| GAAGAACCTTCCAAGACTGT+TGG | - | chr3.2:83051542-83051561 | MS.gene38555:intron | 45.0% | |
| GAATTCCAACTAGAGGAACC+AGG | + | chr3.2:83049577-83049596 | None:intergenic | 45.0% | |
| GACACTCAGAGATCTCAGTA+AGG | - | chr3.2:83050451-83050470 | MS.gene38555:intron | 45.0% | |
| GGGATTAACTATAAAGCCCC+AGG | + | chr3.2:83050243-83050262 | None:intergenic | 45.0% | |
| GGGTTCCTGTAGGTCATATA+AGG | + | chr3.2:83052014-83052033 | None:intergenic | 45.0% | |
| GTCAAGCCAACTGTTCTTGA+AGG | - | chr3.2:83051398-83051417 | MS.gene38555:intron | 45.0% | |
| TAATCCACCACTGGGTGTAA+GGG | + | chr3.2:83050264-83050283 | None:intergenic | 45.0% | |
| TCATCGGCAAAGTTCAAGTG+GGG | + | chr3.2:83051890-83051909 | None:intergenic | 45.0% | |
| ! | GGGTTCAGACATCTTTTCTC+TGG | - | chr3.2:83051661-83051680 | MS.gene38555:intron | 45.0% |
| ! | TTGGCTTGACATCAACAGGA+GGG | + | chr3.2:83051388-83051407 | None:intergenic | 45.0% |
| !! | ACAGTTGGCTTGACATCAAC+AGG | + | chr3.2:83051392-83051411 | None:intergenic | 45.0% |
| !!! | AAAAAATTGTTTTAATATTA+AGG | + | chr3.2:83051234-83051253 | None:intergenic | 5.0% |
| AAAGCCCTGGTTCCTCTAGT+TGG | - | chr3.2:83049569-83049588 | MS.gene38555:CDS | 50.0% | |
| AATACTCCTGCAATGCGTCG+CGG | - | chr3.2:83049770-83049789 | MS.gene38555:intron | 50.0% | |
| AATCCACCACTGGGTGTAAG+GGG | + | chr3.2:83050263-83050282 | None:intergenic | 50.0% | |
| ACCAGACGACTTTGCTCAAC+AGG | + | chr3.2:83050491-83050510 | None:intergenic | 50.0% | |
| ACCTTCCAAGACTGTTGGTG+CGG | - | chr3.2:83051547-83051566 | MS.gene38555:intron | 50.0% | |
| ATATGACCTACAGGAACCCG+TGG | - | chr3.2:83052015-83052034 | MS.gene38555:CDS | 50.0% | |
| CAAGTGGGGCTACTTGAACT+CGG | + | chr3.2:83051876-83051895 | None:intergenic | 50.0% | |
| CACAAAGTTCTTGGTCCAGC+TGG | + | chr3.2:83049797-83049816 | None:intergenic | 50.0% | |
| CTAATCCACCACTGGGTGTA+AGG | + | chr3.2:83050265-83050284 | None:intergenic | 50.0% | |
| CTCAGAGATCTCAGTAAGGG+TGG | - | chr3.2:83050455-83050474 | MS.gene38555:intron | 50.0% | |
| GAACCAGGGCTTTGCTTCAA+GGG | + | chr3.2:83049562-83049581 | None:intergenic | 50.0% | |
| GGATTAGAAAGCTCGACCAC+GGG | + | chr3.2:83052034-83052053 | None:intergenic | 50.0% | |
| GTTAATCCCCTTACACCCAG+TGG | - | chr3.2:83050254-83050273 | MS.gene38555:intron | 50.0% | |
| TCCTGTTGAGCAAAGTCGTC+TGG | - | chr3.2:83050487-83050506 | MS.gene38555:intron | 50.0% | |
| ! | TGCATCAAACCCTGGTGATG+AGG | - | chr3.2:83051586-83051605 | MS.gene38555:intron | 50.0% |
| !! | GTTGGCTTGACATCAACAGG+AGG | + | chr3.2:83051389-83051408 | None:intergenic | 50.0% |
| AATCCCCTTACACCCAGTGG+TGG | - | chr3.2:83050257-83050276 | MS.gene38555:intron | 55.0% | |
| ACAGCTGAGACAATGGTCCC+TGG | - | chr3.2:83050206-83050225 | MS.gene38555:CDS | 55.0% | |
| ACCTTCCGCACCAACAGTCT+TGG | + | chr3.2:83051555-83051574 | None:intergenic | 55.0% | |
| CAACCTTGTTGGCCCACATG+AGG | + | chr3.2:83049832-83049851 | None:intergenic | 55.0% | |
| CAATGCATGCGGCCTCATGT+GGG | - | chr3.2:83049817-83049836 | MS.gene38555:intron | 55.0% | |
| CTCATGTGGGCCAACAAGGT+TGG | - | chr3.2:83049830-83049849 | MS.gene38555:intron | 55.0% | |
| GAGACAATGGTCCCTGGCAT+GGG | - | chr3.2:83050212-83050231 | MS.gene38555:CDS | 55.0% | |
| GGAACCAGGGCTTTGCTTCA+AGG | + | chr3.2:83049563-83049582 | None:intergenic | 55.0% | |
| TCCAAGACTGTTGGTGCGGA+AGG | - | chr3.2:83051551-83051570 | MS.gene38555:intron | 55.0% | |
| TCCGCACCAACAGTCTTGGA+AGG | + | chr3.2:83051551-83051570 | None:intergenic | 55.0% | |
| TGAGACAATGGTCCCTGGCA+TGG | - | chr3.2:83050211-83050230 | MS.gene38555:CDS | 55.0% | |
| TGGAATTCAGCACAGGGTGC+TGG | - | chr3.2:83049589-83049608 | MS.gene38555:CDS | 55.0% | |
| TGGGGCTACTTGAACTCGGA+TGG | + | chr3.2:83051872-83051891 | None:intergenic | 55.0% | |
| GCAATGCATGCGGCCTCATG+TGG | - | chr3.2:83049816-83049835 | MS.gene38555:intron | 60.0% | |
| GCACCCTTGAAGCAAAGCCC+TGG | - | chr3.2:83049556-83049575 | MS.gene38555:CDS | 60.0% | |
| GTGCAGCCAACTCCAGCTAC+TGG | + | chr3.2:83049940-83049959 | None:intergenic | 60.0% | |
| !! | GCACAGGGTGCTGGTCAAGA+TGG | - | chr3.2:83049598-83049617 | MS.gene38555:CDS | 60.0% |
| CGGCCTCATGTGGGCCAACA+AGG | - | chr3.2:83049826-83049845 | MS.gene38555:intron | 65.0% | |
| GCTCGACCACGGGTTCCTGT+AGG | + | chr3.2:83052024-83052043 | None:intergenic | 65.0% | |
| CCCAGGGAGCTCCCATGCCA+GGG | + | chr3.2:83050226-83050245 | None:intergenic | 70.0% | |
| CCCTGGCATGGGAGCTCCCT+GGG | - | chr3.2:83050223-83050242 | MS.gene38555:CDS | 70.0% | |
| CCTGGCATGGGAGCTCCCTG+GGG | - | chr3.2:83050224-83050243 | MS.gene38555:CDS | 70.0% | |
| GCAATGCGTCGCGGACCAGC+TGG | - | chr3.2:83049779-83049798 | MS.gene38555:intron | 70.0% | |
| GCTGGTCCGCGACGCATTGC+AGG | + | chr3.2:83049779-83049798 | None:intergenic | 70.0% | |
| TCCCTGGCATGGGAGCTCCC+TGG | - | chr3.2:83050222-83050241 | MS.gene38555:CDS | 70.0% | |
| CCCCAGGGAGCTCCCATGCC+AGG | + | chr3.2:83050227-83050246 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 83049532 | 83052117 | 83049532 | ID=MS.gene38555 |
| chr3.2 | mRNA | 83049532 | 83052117 | 83049532 | ID=MS.gene38555.t1;Parent=MS.gene38555 |
| chr3.2 | exon | 83052008 | 83052117 | 83052008 | ID=MS.gene38555.t1.exon1;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83052008 | 83052117 | 83052008 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| chr3.2 | exon | 83051802 | 83051913 | 83051802 | ID=MS.gene38555.t1.exon2;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83051802 | 83051913 | 83051802 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| chr3.2 | exon | 83051141 | 83051200 | 83051141 | ID=MS.gene38555.t1.exon3;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83051141 | 83051200 | 83051141 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| chr3.2 | exon | 83050201 | 83050266 | 83050201 | ID=MS.gene38555.t1.exon4;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83050201 | 83050266 | 83050201 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| chr3.2 | exon | 83050042 | 83050116 | 83050042 | ID=MS.gene38555.t1.exon5;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83050042 | 83050116 | 83050042 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| chr3.2 | exon | 83049860 | 83049940 | 83049860 | ID=MS.gene38555.t1.exon6;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83049860 | 83049940 | 83049860 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| chr3.2 | exon | 83049532 | 83049621 | 83049532 | ID=MS.gene38555.t1.exon7;Parent=MS.gene38555.t1 |
| chr3.2 | CDS | 83049532 | 83049621 | 83049532 | ID=cds.MS.gene38555.t1;Parent=MS.gene38555.t1 |
| Gene Sequence |
| Protein sequence |
