AlfalfaGEDB | MS.gene32747

M. sativa cultivar XinJiangDaYe / MS.gene32747

KEGG: -
GO: -
PFAM: PF07911.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32747.t1	XP_003603233.2	94.9	117	6	0	1	117	1	117	2.70E-57	231.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32747.t1	G7J943	94.9	117	6	0	1	117	1	117	1.9e-57	231.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene32747	0.811151	8.08E-51	-1.69E-46
MS.gene049262	MS.gene32747	0.802322	5.93E-49	-1.69E-46
MS.gene049404	MS.gene32747	0.802811	4.70E-49	-1.69E-46
MS.gene049435	MS.gene32747	0.817958	2.52E-52	-1.69E-46
MS.gene050026	MS.gene32747	0.808169	3.53E-50	-1.69E-46
MS.gene050073	MS.gene32747	0.800977	1.12E-48	-1.69E-46
MS.gene050442	MS.gene32747	0.800271	1.56E-48	-1.69E-46
MS.gene050611	MS.gene32747	0.811079	8.38E-51	-1.69E-46
MS.gene050680	MS.gene32747	0.825697	4.07E-54	-1.69E-46
MS.gene050750	MS.gene32747	0.804234	2.38E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32747.t1	MTR_3g105340	94.068	118	7	0	1	118	1	118	1.73e-81	235
MS.gene32747.t1	MTR_1g014930	53.509	114	46	2	12	118	17	130	3.89e-36	120
MS.gene32747.t1	MTR_8g021190	55.208	96	41	1	8	101	27	122	3.64e-34	116
MS.gene32747.t1	MTR_4g125030	55.102	98	42	1	10	105	21	118	6.50e-32	109
MS.gene32747.t1	MTR_4g125010	46.957	115	55	3	5	115	18	130	6.51e-28	100
MS.gene32747.t1	MTR_5g006430	47.297	74	38	1	10	82	1	74	1.53e-22	85.1
MS.gene32747.t1	MTR_2g101140	52.778	72	33	1	1	72	52	122	1.06e-20	82.8
MS.gene32747.t1	MTR_8g013990	57.143	63	26	1	11	73	62	123	1.34e-20	82.4
MS.gene32747.t1	MTR_3g109860	36.111	108	68	1	11	117	36	143	8.85e-20	79.3
MS.gene32747.t1	MTR_1g103550	45.946	74	38	2	10	81	1	74	1.28e-19	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32747.t1	AT1G72510	57.447	94	38	1	14	105	36	129	1.81e-34	117
MS.gene32747.t1	AT1G72510	57.447	94	38	1	14	105	36	129	1.81e-34	117
MS.gene32747.t1	AT2G09970	48.980	98	47	2	11	105	33	130	1.49e-27	99.8
MS.gene32747.t1	AT5G20670	48.454	97	45	3	12	105	23	117	7.62e-23	87.4
MS.gene32747.t1	AT1G54095	45.192	104	52	3	1	101	6	107	1.91e-21	83.6
MS.gene32747.t1	AT4G14819	36.697	109	62	3	10	118	1	102	3.47e-19	76.6
MS.gene32747.t1	AT3G22540	38.462	91	51	3	10	99	1	87	5.60e-18	73.6
MS.gene32747.t1	AT1G79770	43.878	98	47	3	7	100	47	140	9.80e-16	69.3
MS.gene32747.t1	AT5G25840	42.391	92	38	3	3	82	34	122	1.16e-13	63.9
MS.gene32747.t1	AT2G25780	38.202	89	51	3	15	100	39	126	1.44e-12	60.8

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Find 30 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAAAGGTTGTTCCCT+CGG	0.525593	3.1:+83178397	None:intergenic
AAATCAACCGTAGGTTTATT+GGG	0.333585	3.1:+83178463	None:intergenic
AACCGAAACCGCGGCGACGA+TGG	0.582114	3.1:-83178698	MS.gene32747:CDS
AACCGCGGCGACGATGGAGG+TGG	0.571492	3.1:-83178692	MS.gene32747:CDS
AAGTCCTCCCAATAAACCTA+CGG	0.635821	3.1:-83178470	MS.gene32747:CDS
ACCTGGGTCGTTGGATTTGT+GGG	0.391134	3.1:-83178594	MS.gene32747:CDS
CAAATCAACCGTAGGTTTAT+TGG	0.207844	3.1:+83178462	None:intergenic
CATGTTCGTGAGAAATACCT+GGG	0.642264	3.1:-83178610	MS.gene32747:CDS
CCAACCGTTCGAAAACTCAA+AGG	0.637318	3.1:+83178385	None:intergenic
CCAGGTATTTCTCACGAACA+TGG	0.611108	3.1:+83178611	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAACCGTAGGTTTATT+GGG	+	chr3.1:83178615-83178634	None:intergenic	30.0%
CAAATCAACCGTAGGTTTAT+TGG	+	chr3.1:83178616-83178635	None:intergenic	35.0%
AAACTCAAAGGTTGTTCCCT+CGG	+	chr3.1:83178681-83178700	None:intergenic	40.0%
AAGTCCTCCCAATAAACCTA+CGG	-	chr3.1:83178605-83178624	MS.gene32747:CDS	40.0%
CATGTTCGTGAGAAATACCT+GGG	-	chr3.1:83178465-83178484	MS.gene32747:CDS	40.0%
CGAACATGGTCAATATACGA+CGG	+	chr3.1:83178453-83178472	None:intergenic	40.0%
GCAAGAATCAAATCAACCGT+AGG	+	chr3.1:83178624-83178643	None:intergenic	40.0%
CCAACCGTTCGAAAACTCAA+AGG	+	chr3.1:83178693-83178712	None:intergenic	45.0%
CCAGGTATTTCTCACGAACA+TGG	+	chr3.1:83178467-83178486	None:intergenic	45.0%
CCATGTTCGTGAGAAATACC+TGG	-	chr3.1:83178464-83178483	MS.gene32747:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	83178369	83178728	83178369	ID=MS.gene32747
chr3.1	mRNA	83178369	83178728	83178369	ID=MS.gene32747.t1;Parent=MS.gene32747
chr3.1	exon	83178369	83178728	83178369	ID=MS.gene32747.t1.exon1;Parent=MS.gene32747.t1
chr3.1	CDS	83178369	83178728	83178369	ID=cds.MS.gene32747.t1;Parent=MS.gene32747.t1

Gene Sequence	>MS.gene32747 ATGGCTTTAACCGAAACCGCGGCGACGATGGAGGTGGTAGCCGTGAAGTGCTACTGTTGCGGCTTAACGGAGGAGTGCACTCCGTCGTATATTGACCATGTTCGTGAGAAATACCTGGGTCGTTGGATTTGTGGGCTATGTGCAGAGGCAGTGAAAGAAGAAGCTTTGAAATCGAAGAGAGATATTAGCACCGATGAAGCTCTTAATCAACACATGAATTTCAGAACTTTAACATCAAGTCCTCCCAATAAACCTACGGTTGATTTGATTCTTGCTGTGAAACATCTTCTTTTTCGGTCTTTGGATTCTCCGAGGGAACAACCTTTGAGTTTTCGAACGGTTGGTAGATCGCATAGATAA
Protein sequence	>MS.gene32747.t1 MALTETAATMEVVAVKCYCCGLTEECTPSYIDHVREKYLGRWICGLCAEAVKEEALKSKRDISTDEALNQHMNFRTLTSSPPNKPTVDLILAVKHLLFRSLDSPREQPLSFRTVGRSHR