Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47903.t1 | XP_003597016.2 | 51.1 | 131 | 48 | 3 | 19 | 149 | 30 | 144 | 3.60E-20 | 108.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47903.t1 | P47927 | 76.2 | 42 | 10 | 0 | 8 | 49 | 160 | 201 | 1.5e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47903.t1 | A0A072VC55 | 51.1 | 131 | 48 | 3 | 19 | 149 | 30 | 144 | 2.6e-20 | 108.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene47903 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene47903 | 0.819864 | 9.28E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene47903 | 0.807846 | 4.14E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene47903 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene47903 | 0.81638 | 5.70E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene47903 | 0.822273 | 2.59E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene47903 | 0.814668 | 1.37E-51 | -1.69E-46 |
| MS.gene052867 | MS.gene47903 | 0.80925 | 2.08E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene47903 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene053966 | MS.gene47903 | 0.811703 | 6.13E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene47903 | 0.802497 | 5.46E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene47903 | 0.823135 | 1.63E-53 | -1.69E-46 |
| MS.gene05417 | MS.gene47903 | 0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene47903 | -0.818601 | 1.80E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene47903 | 0.816965 | 4.21E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene47903 | 0.806929 | 6.48E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene47903 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene47903 | 0.807707 | 4.43E-50 | -1.69E-46 |
| MS.gene05531 | MS.gene47903 | 0.812648 | 3.81E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene47903 | 0.803249 | 3.81E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene47903 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene47903 | 0.840044 | 1.10E-57 | -1.69E-46 |
| MS.gene056162 | MS.gene47903 | 0.804893 | 1.74E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene47903 | 0.813956 | 1.97E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene47903 | 0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene47903 | 0.804451 | 2.15E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene47903 | 0.805231 | 1.47E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene47903 | 0.827617 | 1.42E-54 | -1.69E-46 |
| MS.gene057869 | MS.gene47903 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene47903 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene47903 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene47903 | 0.827244 | 1.74E-54 | -1.69E-46 |
| MS.gene059584 | MS.gene47903 | 0.804592 | 2.01E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene47903 | 0.817861 | 2.65E-52 | -1.69E-46 |
| MS.gene060844 | MS.gene47903 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene47903 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene060919 | MS.gene47903 | 0.812612 | 3.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47903.t1 | MTR_2g088700 | 92.982 | 57 | 4 | 0 | 93 | 149 | 88 | 144 | 4.71e-30 | 111 |
| MS.gene47903.t1 | MTR_2g088700 | 92.982 | 57 | 4 | 0 | 93 | 149 | 88 | 144 | 4.75e-30 | 111 |
| MS.gene47903.t1 | MTR_6g028140 | 48.148 | 54 | 28 | 0 | 93 | 146 | 83 | 136 | 5.89e-11 | 59.7 |
| MS.gene47903.t1 | MTR_5g089200 | 44.872 | 78 | 42 | 1 | 13 | 90 | 151 | 227 | 8.53e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47903.t1 | AT3G03800 | 53.571 | 56 | 26 | 0 | 93 | 148 | 84 | 139 | 3.39e-14 | 68.9 |
| MS.gene47903.t1 | AT3G03800 | 53.571 | 56 | 26 | 0 | 93 | 148 | 84 | 139 | 3.39e-14 | 68.9 |
| MS.gene47903.t1 | AT5G08080 | 57.447 | 47 | 20 | 0 | 93 | 139 | 83 | 129 | 7.86e-13 | 64.3 |
| MS.gene47903.t1 | AT5G08080 | 57.447 | 47 | 20 | 0 | 93 | 139 | 83 | 129 | 7.86e-13 | 64.3 |
| MS.gene47903.t1 | AT5G08080 | 57.447 | 47 | 20 | 0 | 93 | 139 | 83 | 129 | 9.73e-13 | 64.7 |
| MS.gene47903.t1 | AT5G08080 | 57.447 | 47 | 20 | 0 | 93 | 139 | 83 | 129 | 9.73e-13 | 64.7 |
| MS.gene47903.t1 | AT5G08080 | 57.447 | 47 | 20 | 0 | 93 | 139 | 94 | 140 | 9.92e-13 | 64.7 |
Find 23 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGATCTTGACAGAGTTCC+AGG | 0.316919 | 4.1:+11721943 | MS.gene47903:CDS |
| TTAAGAAGCGCAAGTCTCTT+TGG | 0.358710 | 4.1:+11721061 | MS.gene47903:CDS |
| CGTCTATGTTTCTTAATCTC+AGG | 0.392267 | 4.1:+11720964 | MS.gene47903:CDS |
| TTACATAGAACATACCTTAT+GGG | 0.397491 | 4.1:-11720439 | None:intergenic |
| CATTCTTGCTCCGTCAATAC+CGG | 0.466523 | 4.1:-11721805 | None:intergenic |
| TTATGAAGAGGATTTGAAGC+AGG | 0.468923 | 4.1:+11720800 | MS.gene47903:CDS |
| TATGATAATTTCATCCCATA+AGG | 0.480276 | 4.1:+11720425 | None:intergenic |
| GAAAAGGATATTGATGAGGT+TGG | 0.486934 | 4.1:+11721592 | MS.gene47903:intron |
| CAAAAGCCTGGCTGTGAGAA+GGG | 0.499127 | 4.1:+11721780 | MS.gene47903:CDS |
| CCGGTTCCCTTCTCACAGCC+AGG | 0.501105 | 4.1:-11721786 | None:intergenic |
| CCTGGCTGTGAGAAGGGAAC+CGG | 0.506291 | 4.1:+11721786 | MS.gene47903:CDS |
| GAGAAGGGAACCGGTATTGA+CGG | 0.524006 | 4.1:+11721795 | MS.gene47903:CDS |
| CTTTGGTTCATGCAGCTGCT+CGG | 0.524841 | 4.1:+11720603 | MS.gene47903:CDS |
| TTGGTGCCTTAGCGATGGTA+AGG | 0.529609 | 4.1:+11721080 | MS.gene47903:CDS |
| CTAAACAATAGACAAAAGCC+TGG | 0.535553 | 4.1:+11721768 | MS.gene47903:CDS |
| ACAAAAGCCTGGCTGTGAGA+AGG | 0.542434 | 4.1:+11721779 | MS.gene47903:CDS |
| CAACATTGAAGATTATGAAG+AGG | 0.549840 | 4.1:+11720788 | MS.gene47903:CDS |
| TCTCTTTGGTGCCTTAGCGA+TGG | 0.574751 | 4.1:+11721075 | MS.gene47903:CDS |
| AAAATACCTTACCATCGCTA+AGG | 0.592387 | 4.1:-11721086 | None:intergenic |
| AGAGCTGCAATTAAGTTCAG+AGG | 0.598621 | 4.1:+11720744 | MS.gene47903:CDS |
| AATTAAGTTCAGAGGAGTCG+AGG | 0.627825 | 4.1:+11720752 | MS.gene47903:CDS |
| GATGGAAAAGGATATTGATG+AGG | 0.655016 | 4.1:+11721588 | MS.gene47903:intron |
| GGTTGGAAAGATTGCACATG+TGG | 0.657598 | 4.1:+11721609 | MS.gene47903:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGCATATAATAAATTTT+TGG | + | chr4.1:11720695-11720714 | MS.gene47903:intron | 10.0% |
| !! | AAAAATATTCTCAACATTAA+AGG | - | chr4.1:11720565-11720584 | None:intergenic | 15.0% |
| !! | AAATTGAATGTAAAAATTGT+AGG | + | chr4.1:11720472-11720491 | MS.gene47903:intron | 15.0% |
| !! | AATAATTGATTGAAAACTAT+AGG | - | chr4.1:11720877-11720896 | None:intergenic | 15.0% |
| !! | AATTGAATGTAAAAATTGTA+GGG | + | chr4.1:11720473-11720492 | MS.gene47903:intron | 15.0% |
| !! | TGTTATATAGATTTCAAATA+TGG | + | chr4.1:11721707-11721726 | MS.gene47903:intron | 15.0% |
| !!! | AAATTTCATTCATTCTTTTA+TGG | + | chr4.1:11720653-11720672 | MS.gene47903:intron | 15.0% |
| !!! | ATCAATTATTACCTTTTTTT+TGG | + | chr4.1:11720887-11720906 | MS.gene47903:intron | 15.0% |
| !!! | TAATGTTGAGAATATTTTTT+CGG | + | chr4.1:11720566-11720585 | MS.gene47903:intron | 15.0% |
| !!! | TTACATTGATTGATTTTATT+GGG | + | chr4.1:11722464-11722483 | MS.gene47903:intron | 15.0% |
| !!! | TTTACATTGATTGATTTTAT+TGG | + | chr4.1:11722463-11722482 | MS.gene47903:intron | 15.0% |
| !! | AAGTTTACATTTCAAAATAC+AGG | - | chr4.1:11722301-11722320 | None:intergenic | 20.0% |
| !! | AATTCAAGATACCAAAAAAA+AGG | - | chr4.1:11720901-11720920 | None:intergenic | 20.0% |
| !! | ATGGATAAAAAATAGTTAAC+CGG | + | chr4.1:11721726-11721745 | MS.gene47903:intron | 20.0% |
| !!! | AATGTTGAGAATATTTTTTC+GGG | + | chr4.1:11720567-11720586 | MS.gene47903:intron | 20.0% |
| !!! | AATTTTAACTTCAATGTGAA+TGG | + | chr4.1:11721285-11721304 | MS.gene47903:intron | 20.0% |
| !!! | ACTTTGTATATCATGAATTT+TGG | - | chr4.1:11722197-11722216 | None:intergenic | 20.0% |
| !!! | TGTAATTGTTTTATGATGAA+TGG | + | chr4.1:11720511-11720530 | MS.gene47903:intron | 20.0% |
| ! | AACACAGTTAACTTTATCAA+GGG | - | chr4.1:11722125-11722144 | None:intergenic | 25.0% |
| ! | TAAAATTCATGATATGCACA+AGG | + | chr4.1:11722246-11722265 | MS.gene47903:intron | 25.0% |
| ! | TGGATAAAAAATAGTTAACC+GGG | + | chr4.1:11721727-11721746 | MS.gene47903:intron | 25.0% |
| ! | TGTTGTGATTTAAATGAGTT+TGG | + | chr4.1:11720920-11720939 | MS.gene47903:intron | 25.0% |
| ! | TTACATAGAACATACCTTAT+GGG | - | chr4.1:11720442-11720461 | None:intergenic | 25.0% |
| ! | TTTACATAGAACATACCTTA+TGG | - | chr4.1:11720443-11720462 | None:intergenic | 25.0% |
| !! | AAGGTTTGAACATGTAATTT+TGG | + | chr4.1:11722425-11722444 | MS.gene47903:intron | 25.0% |
| !! | TAATGCTCATAAGATTTTAC+TGG | + | chr4.1:11721534-11721553 | MS.gene47903:intron | 25.0% |
| !! | TCTGAAAATCAATTTGTTTC+AGG | + | chr4.1:11720534-11720553 | MS.gene47903:intron | 25.0% |
| !! | TGAAATGTAAACTTTGAGAA+AGG | + | chr4.1:11722307-11722326 | MS.gene47903:intron | 25.0% |
| !!! | ATGTTGAGAATATTTTTTCG+GGG | + | chr4.1:11720568-11720587 | MS.gene47903:intron | 25.0% |
| !!! | GAAAAACAACTTCTAGTTTT+AGG | - | chr4.1:11721986-11722005 | None:intergenic | 25.0% |
| AATACAAGATGAATATCGTG+AGG | + | chr4.1:11722059-11722078 | MS.gene47903:intron | 30.0% | |
| ACACAGTTAACTTTATCAAG+GGG | - | chr4.1:11722124-11722143 | None:intergenic | 30.0% | |
| AGTTCCTTGACTAAAAAGTT+CGG | + | chr4.1:11721922-11721941 | MS.gene47903:intron | 30.0% | |
| AGTTTGGAGGAATTAATTTC+AGG | + | chr4.1:11720936-11720955 | MS.gene47903:intron | 30.0% | |
| ATCATAACAATTGTCTTGGA+TGG | + | chr4.1:11721570-11721589 | MS.gene47903:intron | 30.0% | |
| ATCTACTTTGATATGACTCA+TGG | + | chr4.1:11722379-11722398 | MS.gene47903:intron | 30.0% | |
| ATTACATGTTCAAACCTTTG+TGG | - | chr4.1:11722423-11722442 | None:intergenic | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | - | chr4.1:11721748-11721767 | None:intergenic | 30.0% | |
| CAACACAGTTAACTTTATCA+AGG | - | chr4.1:11722126-11722145 | None:intergenic | 30.0% | |
| CAACATTGAAGATTATGAAG+AGG | + | chr4.1:11720788-11720807 | MS.gene47903:CDS | 30.0% | |
| CATTTCAAAATACAGGCAAA+TGG | - | chr4.1:11722294-11722313 | None:intergenic | 30.0% | |
| CTGAATCATAACAATTGTCT+TGG | + | chr4.1:11721566-11721585 | MS.gene47903:intron | 30.0% | |
| TATTCTCAACATTAAAGGAC+AGG | - | chr4.1:11720560-11720579 | None:intergenic | 30.0% | |
| TGAGAAGATAGACATAAACT+TGG | - | chr4.1:11722008-11722027 | None:intergenic | 30.0% | |
| TGCACTTAGTAACAACAAAA+GGG | - | chr4.1:11722501-11722520 | None:intergenic | 30.0% | |
| TGTGATTTAAATGAGTTTGG+AGG | + | chr4.1:11720923-11720942 | MS.gene47903:intron | 30.0% | |
| ! | AAGTTTTTCATGGCATACAA+AGG | + | chr4.1:11721000-11721019 | MS.gene47903:CDS | 30.0% |
| ! | AATGAAAGTTGAGATCCTTT+TGG | + | chr4.1:11722332-11722351 | MS.gene47903:intron | 30.0% |
| ! | GTAGTACTTTAGAAATTTGC+TGG | + | chr4.1:11722153-11722172 | MS.gene47903:intron | 30.0% |
| ! | TCATAAGATTTTACTGGTAC+TGG | + | chr4.1:11721540-11721559 | MS.gene47903:intron | 30.0% |
| !! | TAGTTCTGATTATTGTGATC+TGG | + | chr4.1:11721165-11721184 | MS.gene47903:intron | 30.0% |
| !!! | CAACTCTTTCAAGTTTTTCA+TGG | + | chr4.1:11720990-11721009 | MS.gene47903:CDS | 30.0% |
| !!! | GGCATACAAAGGATTTTTTA+TGG | + | chr4.1:11721011-11721030 | MS.gene47903:CDS | 30.0% |
| !!! | TGTTGAGAATATTTTTTCGG+GGG | + | chr4.1:11720569-11720588 | MS.gene47903:intron | 30.0% |
| AAAATACCTTACCATCGCTA+AGG | - | chr4.1:11721089-11721108 | None:intergenic | 35.0% | |
| AAGTTAACTGTGTTGCACTA+CGG | + | chr4.1:11722131-11722150 | MS.gene47903:intron | 35.0% | |
| ACAATTGTCTTGGATGGAAA+AGG | + | chr4.1:11721576-11721595 | MS.gene47903:intron | 35.0% | |
| CCTTGTAACAATACCTTTCA+TGG | - | chr4.1:11721475-11721494 | None:intergenic | 35.0% | |
| CGCATGGAGTATAAGAAAAT+TGG | + | chr4.1:11721383-11721402 | MS.gene47903:intron | 35.0% | |
| CGTCTATGTTTCTTAATCTC+AGG | + | chr4.1:11720964-11720983 | MS.gene47903:CDS | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | + | chr4.1:11721768-11721787 | MS.gene47903:CDS | 35.0% | |
| CTGCACTTAGTAACAACAAA+AGG | - | chr4.1:11722502-11722521 | None:intergenic | 35.0% | |
| GAAAAGGATATTGATGAGGT+TGG | + | chr4.1:11721592-11721611 | MS.gene47903:intron | 35.0% | |
| GATGGAAAAGGATATTGATG+AGG | + | chr4.1:11721588-11721607 | MS.gene47903:intron | 35.0% | |
| GTTCCTTGACTAAAAAGTTC+GGG | + | chr4.1:11721923-11721942 | MS.gene47903:intron | 35.0% | |
| TTCCTTGACTAAAAAGTTCG+GGG | + | chr4.1:11721924-11721943 | MS.gene47903:CDS | 35.0% | |
| ! | ATAGCAATAGCAATTTTCGC+AGG | + | chr4.1:11721410-11721429 | MS.gene47903:intron | 35.0% |
| ! | ATTTGAAGCAGGTGAGTTAT+GGG | + | chr4.1:11720811-11720830 | MS.gene47903:intron | 35.0% |
| ! | CAAGTTTCAGTATTTTCGCA+TGG | + | chr4.1:11721367-11721386 | MS.gene47903:intron | 35.0% |
| ! | CATGGAATGAGATAGCTTTT+TGG | + | chr4.1:11722397-11722416 | MS.gene47903:intron | 35.0% |
| ! | GGCAATGTCTGTAATTCTTT+TGG | + | chr4.1:11721493-11721512 | MS.gene47903:intron | 35.0% |
| ! | TTATGAAGAGGATTTGAAGC+AGG | + | chr4.1:11720800-11720819 | MS.gene47903:CDS | 35.0% |
| !! | ACAAAAGCATTTGCCATGAA+AGG | + | chr4.1:11721459-11721478 | MS.gene47903:intron | 35.0% |
| !! | CCATGAAAGGTATTGTTACA+AGG | + | chr4.1:11721472-11721491 | MS.gene47903:intron | 35.0% |
| !!! | CTTTTGTTGTTACTAAGTGC+AGG | + | chr4.1:11722500-11722519 | MS.gene47903:intron | 35.0% |
| AATTAAGTTCAGAGGAGTCG+AGG | + | chr4.1:11720752-11720771 | MS.gene47903:CDS | 40.0% | |
| AGAGCTGCAATTAAGTTCAG+AGG | + | chr4.1:11720744-11720763 | MS.gene47903:CDS | 40.0% | |
| AGATGAATATCGTGAGGTTG+TGG | + | chr4.1:11722065-11722084 | MS.gene47903:intron | 40.0% | |
| GCAGAATAAGTGTGACCAAA+AGG | - | chr4.1:11722350-11722369 | None:intergenic | 40.0% | |
| GTCAAGGAACTGCAATTTCA+AGG | - | chr4.1:11721913-11721932 | None:intergenic | 40.0% | |
| GTGGAGAGAAGAGTTATTAC+AGG | + | chr4.1:11722084-11722103 | MS.gene47903:intron | 40.0% | |
| GTGTTTCAGAACAACATACC+TGG | - | chr4.1:11721964-11721983 | None:intergenic | 40.0% | |
| ! | ATTTTCGCAGGAAGCTAATG+AGG | + | chr4.1:11721422-11721441 | MS.gene47903:intron | 40.0% |
| ! | GATTTGAAGCAGGTGAGTTA+TGG | + | chr4.1:11720810-11720829 | MS.gene47903:intron | 40.0% |
| ! | TTAAGAAGCGCAAGTCTCTT+TGG | + | chr4.1:11721061-11721080 | MS.gene47903:CDS | 40.0% |
| ! | TTTGAAGCAGGTGAGTTATG+GGG | + | chr4.1:11720812-11720831 | MS.gene47903:intron | 40.0% |
| !! | AGATAGCTTTTTGGCCACAA+AGG | + | chr4.1:11722406-11722425 | MS.gene47903:intron | 40.0% |
| !! | ATCCCCGAACTTTTTAGTCA+AGG | - | chr4.1:11721929-11721948 | None:intergenic | 40.0% |
| CATTCTTGCTCCGTCAATAC+CGG | - | chr4.1:11721808-11721827 | None:intergenic | 45.0% | |
| GGTTGGAAAGATTGCACATG+TGG | + | chr4.1:11721609-11721628 | MS.gene47903:CDS | 45.0% | |
| ACAAAAGCCTGGCTGTGAGA+AGG | + | chr4.1:11721779-11721798 | MS.gene47903:CDS | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | + | chr4.1:11721780-11721799 | MS.gene47903:CDS | 50.0% | |
| CGGGGGTTATCAGTACTCTT+TGG | + | chr4.1:11720586-11720605 | MS.gene47903:intron | 50.0% | |
| ! | CTTTGGTTCATGCAGCTGCT+CGG | + | chr4.1:11720603-11720622 | MS.gene47903:CDS | 50.0% |
| ! | GAGAAGGGAACCGGTATTGA+CGG | + | chr4.1:11721795-11721814 | MS.gene47903:CDS | 50.0% |
| ! | TTGGTGCCTTAGCGATGGTA+AGG | + | chr4.1:11721080-11721099 | MS.gene47903:CDS | 50.0% |
| !! | TCTCTTTGGTGCCTTAGCGA+TGG | + | chr4.1:11721075-11721094 | MS.gene47903:CDS | 50.0% |
| GGGGATCTTGACAGAGTTCC+AGG | + | chr4.1:11721943-11721962 | MS.gene47903:CDS | 55.0% | |
| CCTGGCTGTGAGAAGGGAAC+CGG | + | chr4.1:11721786-11721805 | MS.gene47903:CDS | 60.0% | |
| CCGGTTCCCTTCTCACAGCC+AGG | - | chr4.1:11721789-11721808 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11720426 | 11722553 | 11720426 | ID=MS.gene47903 |
| chr4.1 | mRNA | 11720426 | 11722553 | 11720426 | ID=MS.gene47903.t1;Parent=MS.gene47903 |
| chr4.1 | exon | 11720426 | 11720446 | 11720426 | ID=MS.gene47903.t1.exon1;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11720426 | 11720446 | 11720426 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11720599 | 11720624 | 11720599 | ID=MS.gene47903.t1.exon2;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11720599 | 11720624 | 11720599 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11720734 | 11720821 | 11720734 | ID=MS.gene47903.t1.exon3;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11720734 | 11720821 | 11720734 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11720958 | 11721101 | 11720958 | ID=MS.gene47903.t1.exon4;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11720958 | 11721101 | 11720958 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11721598 | 11721663 | 11721598 | ID=MS.gene47903.t1.exon5;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11721598 | 11721663 | 11721598 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11721765 | 11721838 | 11721765 | ID=MS.gene47903.t1.exon6;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11721765 | 11721838 | 11721765 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11721924 | 11721964 | 11721924 | ID=MS.gene47903.t1.exon7;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11721924 | 11721964 | 11721924 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| chr4.1 | exon | 11722522 | 11722553 | 11722522 | ID=MS.gene47903.t1.exon8;Parent=MS.gene47903.t1 |
| chr4.1 | CDS | 11722522 | 11722553 | 11722522 | ID=cds.MS.gene47903.t1;Parent=MS.gene47903.t1 |
| Gene Sequence |
| Protein sequence |
