Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61716.t1 | KEH28672.1 | 95.4 | 65 | 3 | 0 | 1 | 65 | 1 | 65 | 7.20E-27 | 130.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61716.t1 | A0A072UG52 | 95.4 | 65 | 3 | 0 | 1 | 65 | 1 | 65 | 5.2e-27 | 130.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051800 | MS.gene61716 | 0.813528 | 2.45E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene61716 | 0.810601 | 1.06E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene61716 | 0.81035 | 1.20E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene61716 | 0.830118 | 3.52E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene61716 | 0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene61716 | 0.801677 | 8.04E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene61716 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene61716 | 0.814263 | 1.68E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene61716 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene61716 | 0.810591 | 1.07E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene61716 | 0.810217 | 1.29E-50 | -1.69E-46 |
| MS.gene060843 | MS.gene61716 | 0.873867 | 1.05E-67 | -1.69E-46 |
| MS.gene060844 | MS.gene61716 | 0.940726 | 1.42E-100 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61716.t1 | MTR_4g009870 | 95.977 | 174 | 7 | 0 | 1 | 174 | 1 | 174 | 1.44e-115 | 331 |
| MS.gene61716.t1 | MTR_4g009870 | 33.537 | 164 | 85 | 3 | 26 | 165 | 147 | 310 | 1.58e-13 | 67.4 |
| MS.gene61716.t1 | MTR_4g009870 | 95.977 | 174 | 7 | 0 | 1 | 174 | 1 | 174 | 1.83e-115 | 332 |
| MS.gene61716.t1 | MTR_4g009870 | 33.735 | 166 | 108 | 2 | 1 | 165 | 194 | 358 | 6.52e-15 | 71.6 |
| MS.gene61716.t1 | MTR_4g009870 | 30.994 | 171 | 116 | 2 | 4 | 173 | 173 | 342 | 4.83e-13 | 66.2 |
| MS.gene61716.t1 | MTR_4g009870 | 35.503 | 169 | 108 | 1 | 1 | 169 | 98 | 265 | 5.98e-13 | 65.9 |
| MS.gene61716.t1 | MTR_4g009870 | 35.135 | 148 | 95 | 1 | 26 | 173 | 147 | 293 | 6.09e-13 | 65.9 |
| MS.gene61716.t1 | MTR_4g116170 | 66.092 | 174 | 59 | 0 | 1 | 174 | 197 | 370 | 4.96e-65 | 209 |
| MS.gene61716.t1 | MTR_4g116170 | 31.928 | 166 | 111 | 2 | 1 | 165 | 390 | 554 | 9.50e-17 | 77.0 |
| MS.gene61716.t1 | MTR_4g116170 | 35.882 | 170 | 108 | 1 | 4 | 173 | 321 | 489 | 7.52e-15 | 71.6 |
| MS.gene61716.t1 | MTR_4g116170 | 28.182 | 220 | 111 | 2 | 1 | 173 | 246 | 465 | 1.49e-13 | 68.2 |
| MS.gene61716.t1 | MTR_4g116170 | 31.395 | 172 | 110 | 3 | 6 | 170 | 365 | 535 | 5.14e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61716.t1 | AT1G15740 | 70.286 | 175 | 51 | 1 | 1 | 174 | 205 | 379 | 2.41e-70 | 223 |
| MS.gene61716.t1 | AT1G15740 | 37.647 | 170 | 105 | 1 | 4 | 173 | 330 | 498 | 6.63e-18 | 80.5 |
| MS.gene61716.t1 | AT1G15740 | 34.014 | 147 | 96 | 1 | 28 | 174 | 306 | 451 | 5.03e-13 | 66.6 |
| MS.gene61716.t1 | AT1G15740 | 30.481 | 187 | 104 | 2 | 4 | 165 | 378 | 563 | 2.45e-11 | 61.6 |
| MS.gene61716.t1 | AT4G23840 | 34.911 | 169 | 104 | 2 | 1 | 168 | 79 | 242 | 8.15e-13 | 65.9 |
Find 38 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGCTTGGATTCACTTTC+AGG | 0.068243 | 4.3:-83631483 | MS.gene61716:intron |
| TGTAGTAAAGTCACTGATTT+TGG | 0.168024 | 4.3:-83632130 | MS.gene61716:CDS |
| GAAGCTTGCCCTCTTAAATT+TGG | 0.198047 | 4.3:-83631526 | MS.gene61716:CDS |
| TTAAGCAGGATTGACAAAAT+TGG | 0.248392 | 4.3:-83630167 | MS.gene61716:intron |
| CTTCTCTGGTCTTGTTAACT+TGG | 0.285104 | 4.3:-83632992 | MS.gene61716:CDS |
| TCCGATATGAAGCCTTTATC+AGG | 0.299738 | 4.3:-83632624 | MS.gene61716:intron |
| TAACTTGGTCAAGTTGGATT+TGG | 0.325759 | 4.3:-83632977 | MS.gene61716:CDS |
| GAGAGATGTCCTGGGATTCA+TGG | 0.355408 | 4.3:-83632955 | MS.gene61716:CDS |
| TTGGATTTGGAGAGATGTCC+TGG | 0.400413 | 4.3:-83632964 | MS.gene61716:CDS |
| AACCTTGATTCATGTAAGAT+TGG | 0.403335 | 4.3:-83630136 | MS.gene61716:CDS |
| AGATGCAACAAACCTGATAA+AGG | 0.406288 | 4.3:+83632612 | None:intergenic |
| TCTTGTAACATCTGCATGCT+TGG | 0.409080 | 4.3:-83631496 | MS.gene61716:CDS |
| TTTCTGACAGAGGGTGTGAT+AGG | 0.424800 | 4.3:-83630599 | MS.gene61716:CDS |
| CAAGGAATGAGTGCCTTCTC+TGG | 0.429753 | 4.3:-83633006 | None:intergenic |
| GACACCCTTCCAAATTTAAG+AGG | 0.430139 | 4.3:+83631517 | None:intergenic |
| ACCTGATAAAGGCTTCATAT+CGG | 0.443237 | 4.3:+83632623 | None:intergenic |
| AGATTCAAGTTTGACAGTGC+AGG | 0.445204 | 4.3:+83630636 | None:intergenic |
| AAAGTTGAAAGTATTAAACT+TGG | 0.469983 | 4.3:-83630414 | MS.gene61716:CDS |
| TCTTGTTAACTTGGTCAAGT+TGG | 0.476241 | 4.3:-83632983 | MS.gene61716:CDS |
| CACCAATCTTACATGAATCA+AGG | 0.510275 | 4.3:+83630134 | None:intergenic |
| TGATGAAGGATTGGTGAACT+TGG | 0.515944 | 4.3:-83630113 | MS.gene61716:CDS |
| GATTCAAGTTTGACAGTGCA+GGG | 0.517023 | 4.3:+83630637 | None:intergenic |
| CTTGCCCTCTTAAATTTGGA+AGG | 0.517960 | 4.3:-83631522 | MS.gene61716:CDS |
| TCATGTAAGATTGGTGATGA+AGG | 0.532453 | 4.3:-83630127 | MS.gene61716:CDS |
| GAAGGATTGGTGAACTTGGC+AGG | 0.535990 | 4.3:-83630109 | None:intergenic |
| AAGTTGAAAGTATTAAACTT+GGG | 0.557845 | 4.3:-83630413 | MS.gene61716:CDS |
| GCATGTTTAGCTCATTTGAA+AGG | 0.558223 | 4.3:-83630371 | MS.gene61716:intron |
| CAAGTTAACAAGACCAGAGA+AGG | 0.565092 | 4.3:+83632993 | None:intergenic |
| TAAGATTGGTGATGAAGGAT+TGG | 0.567788 | 4.3:-83630122 | MS.gene61716:CDS |
| TTGCCCTCTTAAATTTGGAA+GGG | 0.576199 | 4.3:-83631521 | MS.gene61716:CDS |
| AACTTGGGATTTAATGACAT+AGG | 0.577016 | 4.3:-83630398 | MS.gene61716:CDS |
| ACAGTGCCTCCATGAATCCC+AGG | 0.590376 | 4.3:+83632946 | None:intergenic |
| TGGATTTGGAGAGATGTCCT+GGG | 0.594319 | 4.3:-83632963 | MS.gene61716:CDS |
| ACACCCTTCCAAATTTAAGA+GGG | 0.605875 | 4.3:+83631518 | None:intergenic |
| GATGCAATATTTCTGACAGA+GGG | 0.606799 | 4.3:-83630608 | MS.gene61716:CDS |
| TGGAATCTCTCAATATGAAG+TGG | 0.616270 | 4.3:-83632665 | MS.gene61716:CDS |
| AGATGCAATATTTCTGACAG+AGG | 0.657280 | 4.3:-83630609 | MS.gene61716:CDS |
| AGATGTCCTGGGATTCATGG+AGG | 0.711361 | 4.3:-83632952 | MS.gene61716:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAAGTAAGAAAAATAT+CGG | - | chr4.3:83631909-83631928 | MS.gene61716:intron | 15.0% |
| !! | ATTCTTAGAAAATATTACTA+AGG | - | chr4.3:83631413-83631432 | MS.gene61716:intron | 15.0% |
| !! | GTATAATTACATAATTTACA+GGG | - | chr4.3:83632578-83632597 | MS.gene61716:intron | 15.0% |
| !! | TAATGCTAATAAAAAAGAAA+AGG | + | chr4.3:83632110-83632129 | None:intergenic | 15.0% |
| !!! | AAAATTTTGTTTCCAATATT+GGG | - | chr4.3:83632054-83632073 | MS.gene61716:intron | 15.0% |
| !!! | TTCATTTAAATTAGTTTTCT+CGG | - | chr4.3:83631984-83632003 | MS.gene61716:intron | 15.0% |
| !! | ACTTAAGTAAGAAAAATATC+GGG | - | chr4.3:83631910-83631929 | MS.gene61716:intron | 20.0% |
| !! | ATAACTTCAATCAAACTATT+TGG | - | chr4.3:83630396-83630415 | MS.gene61716:CDS | 20.0% |
| !! | ATAGGAATTGTATTTGAAAA+TGG | - | chr4.3:83632889-83632908 | MS.gene61716:intron | 20.0% |
| !! | ATATTAAATCAAAACTCCAA+TGG | + | chr4.3:83632431-83632450 | None:intergenic | 20.0% |
| !! | GGTATAATTACATAATTTAC+AGG | - | chr4.3:83632577-83632596 | MS.gene61716:intron | 20.0% |
| !! | TATTAAATCAAAACTCCAAT+GGG | + | chr4.3:83632430-83632449 | None:intergenic | 20.0% |
| !!! | AAACTTTTTTGTTTACACAA+AGG | + | chr4.3:83630218-83630237 | None:intergenic | 20.0% |
| !!! | AAAGTTGAAAGTATTAAACT+TGG | - | chr4.3:83632696-83632715 | MS.gene61716:intron | 20.0% |
| !!! | AAATTTTGTTTCCAATATTG+GGG | - | chr4.3:83632055-83632074 | MS.gene61716:intron | 20.0% |
| !!! | AAGTTGAAAGTATTAAACTT+GGG | - | chr4.3:83632697-83632716 | MS.gene61716:intron | 20.0% |
| !!! | ACTTATGTATATTTTTAAGC+AGG | - | chr4.3:83632929-83632948 | MS.gene61716:intron | 20.0% |
| !!! | AGTTATGAAGAAATCAATTT+TGG | + | chr4.3:83630382-83630401 | None:intergenic | 20.0% |
| !!! | CAAAATTTTGTTTCCAATAT+TGG | - | chr4.3:83632053-83632072 | MS.gene61716:intron | 20.0% |
| !!! | CAATATTGGAAACAAAATTT+TGG | + | chr4.3:83632055-83632074 | None:intergenic | 20.0% |
| !!! | TCATTTAAATTAGTTTTCTC+GGG | - | chr4.3:83631985-83632004 | MS.gene61716:intron | 20.0% |
| ! | AAGAAAAGGTTAATACTGTA+TGG | + | chr4.3:83632096-83632115 | None:intergenic | 25.0% |
| ! | AAGAAGACAATAACCTAAAT+AGG | + | chr4.3:83630621-83630640 | None:intergenic | 25.0% |
| ! | AATACTGTATGGACAATATT+GGG | + | chr4.3:83632085-83632104 | None:intergenic | 25.0% |
| ! | AATTGCACTAAATTCTTGTT+AGG | - | chr4.3:83631713-83631732 | MS.gene61716:intron | 25.0% |
| ! | ACAAACTACTGGTAAAATAA+CGG | - | chr4.3:83632830-83632849 | MS.gene61716:intron | 25.0% |
| ! | ATAGGCTTAAAATTCTATGA+AGG | + | chr4.3:83631660-83631679 | None:intergenic | 25.0% |
| ! | CATAACAAAATAACCAGAAT+AGG | + | chr4.3:83631678-83631697 | None:intergenic | 25.0% |
| ! | CTTAAGTAAGAAAAATATCG+GGG | - | chr4.3:83631911-83631930 | MS.gene61716:intron | 25.0% |
| ! | TAATACTGTATGGACAATAT+TGG | + | chr4.3:83632086-83632105 | None:intergenic | 25.0% |
| ! | TGGCATATAATAACTTAATG+AGG | - | chr4.3:83632396-83632415 | MS.gene61716:intron | 25.0% |
| ! | TTAAGTAAGAAAAATATCGG+GGG | - | chr4.3:83631912-83631931 | MS.gene61716:intron | 25.0% |
| ! | TTGTCATAGAAATATTTGTG+TGG | - | chr4.3:83631948-83631967 | MS.gene61716:intron | 25.0% |
| ! | TTTGAAGGTTGTATAATAAC+TGG | + | chr4.3:83630276-83630295 | None:intergenic | 25.0% |
| !! | ATAGAATTTTAAGCCTATTC+TGG | - | chr4.3:83631662-83631681 | MS.gene61716:intron | 25.0% |
| !! | ATTGTCTTACACTAGTTTAT+AGG | - | chr4.3:83631075-83631094 | MS.gene61716:intron | 25.0% |
| !!! | ATGTTTAGCTTGAAACAAAA+AGG | - | chr4.3:83631166-83631185 | MS.gene61716:intron | 25.0% |
| !!! | ATTCTAAAGCTAATTCTTTC+AGG | - | chr4.3:83632555-83632574 | MS.gene61716:intron | 25.0% |
| !!! | CTATTTGGTTCATATTTTTC+AGG | - | chr4.3:83630411-83630430 | MS.gene61716:CDS | 25.0% |
| !!! | TTCTAAAGCTAATTCTTTCA+GGG | - | chr4.3:83632556-83632575 | MS.gene61716:intron | 25.0% |
| !!! | TTTTTTTTTCCTTTCTTCAC+TGG | - | chr4.3:83631788-83631807 | MS.gene61716:intron | 25.0% |
| AAATAGGAACTATTCAGTAG+TGG | + | chr4.3:83630605-83630624 | None:intergenic | 30.0% | |
| AAATCTCGAAAACAAAGCAT+TGG | + | chr4.3:83630558-83630577 | None:intergenic | 30.0% | |
| AACCAAGACAACATTGAAAA+CGG | + | chr4.3:83631549-83631568 | None:intergenic | 30.0% | |
| AACCTGAAATTTCCTTTAAC+AGG | + | chr4.3:83631497-83631516 | None:intergenic | 30.0% | |
| AACCTTGATTCATGTAAGAT+TGG | - | chr4.3:83632974-83632993 | MS.gene61716:CDS | 30.0% | |
| AACTTGGGATTTAATGACAT+AGG | - | chr4.3:83632712-83632731 | MS.gene61716:intron | 30.0% | |
| AAGCTGAAACACTGTTTAAT+AGG | - | chr4.3:83631829-83631848 | MS.gene61716:intron | 30.0% | |
| ACCAATGATTTGAAGGTAAT+AGG | + | chr4.3:83631449-83631468 | None:intergenic | 30.0% | |
| ACTTATTCTGTACAAACTAC+TGG | - | chr4.3:83632819-83632838 | MS.gene61716:intron | 30.0% | |
| AGATAGTTCAGTTGAAGATT+CGG | + | chr4.3:83631199-83631218 | None:intergenic | 30.0% | |
| AGTTATTGTAGGAATGTTGA+TGG | - | chr4.3:83632640-83632659 | MS.gene61716:CDS | 30.0% | |
| ATACTGTATGGACAATATTG+GGG | + | chr4.3:83632084-83632103 | None:intergenic | 30.0% | |
| ATTTCCTTTAACAGGTAAAG+AGG | + | chr4.3:83631489-83631508 | None:intergenic | 30.0% | |
| CATTCCTACAATAACTGTTT+CGG | + | chr4.3:83632636-83632655 | None:intergenic | 30.0% | |
| CTACTGAATAGTTCCTATTT+AGG | - | chr4.3:83630605-83630624 | MS.gene61716:CDS | 30.0% | |
| GTAACTTAATGATGTCTTTC+TGG | - | chr4.3:83632376-83632395 | MS.gene61716:intron | 30.0% | |
| TACCTGTTAAAGGAAATTTC+AGG | - | chr4.3:83631492-83631511 | MS.gene61716:CDS | 30.0% | |
| TGAAGTTCATCAAAGAACAT+TGG | + | chr4.3:83630247-83630266 | None:intergenic | 30.0% | |
| TGCTAGAGTAGAATAAAGAT+AGG | - | chr4.3:83632871-83632890 | MS.gene61716:intron | 30.0% | |
| TGTCTGAAAAGTAAAGCTTT+GGG | - | chr4.3:83630317-83630336 | MS.gene61716:intron | 30.0% | |
| TTAAGCAGGATTGACAAAAT+TGG | - | chr4.3:83632943-83632962 | MS.gene61716:CDS | 30.0% | |
| TTGTCATCTTCTTAGACATA+TGG | - | chr4.3:83630789-83630808 | MS.gene61716:intron | 30.0% | |
| TTGTCTGAAAAGTAAAGCTT+TGG | - | chr4.3:83630316-83630335 | MS.gene61716:intron | 30.0% | |
| ! | AAAGCATTCACAAGACAATA+AGG | + | chr4.3:83631757-83631776 | None:intergenic | 30.0% |
| ! | AACCTTAATGCTTTTACGAA+AGG | - | chr4.3:83632027-83632046 | MS.gene61716:intron | 30.0% |
| ! | ATAATTTACAGGGTGCTTAT+TGG | - | chr4.3:83632588-83632607 | MS.gene61716:intron | 30.0% |
| ! | GATATTTCGAATTTGCTTTC+TGG | + | chr4.3:83631392-83631411 | None:intergenic | 30.0% |
| ! | TAATTTACAGGGTGCTTATT+GGG | - | chr4.3:83632589-83632608 | MS.gene61716:intron | 30.0% |
| !! | ACAAAGCATTGGTAAATTTC+TGG | + | chr4.3:83630547-83630566 | None:intergenic | 30.0% |
| !! | ATTTACCTTGGTTCTTTTAC+AGG | - | chr4.3:83632667-83632686 | MS.gene61716:CDS | 30.0% |
| !! | TTCCTTTCGTAAAAGCATTA+AGG | + | chr4.3:83632032-83632051 | None:intergenic | 30.0% |
| !! | TTCGTAAAAGCATTAAGGTT+TGG | + | chr4.3:83632027-83632046 | None:intergenic | 30.0% |
| !!! | TGGGATCTACATTTTGTTTT+TGG | - | chr4.3:83632608-83632627 | MS.gene61716:intron | 30.0% |
| !!! | TGTAGTAAAGTCACTGATTT+TGG | - | chr4.3:83630980-83630999 | MS.gene61716:intron | 30.0% |
| !!! | TTAAATTAGTTTTCTCGGGT+GGG | - | chr4.3:83631989-83632008 | MS.gene61716:intron | 30.0% |
| !!! | TTTAAATTAGTTTTCTCGGG+TGG | - | chr4.3:83631988-83632007 | MS.gene61716:intron | 30.0% |
| !!! | TTTTTCAGGTCTAACTAAGT+TGG | - | chr4.3:83630425-83630444 | MS.gene61716:intron | 30.0% |
| AATGAGGATGTAATACCCAT+TGG | - | chr4.3:83632412-83632431 | MS.gene61716:intron | 35.0% | |
| ACACCCTTCCAAATTTAAGA+GGG | + | chr4.3:83631595-83631614 | None:intergenic | 35.0% | |
| ACCTGATAAAGGCTTCATAT+CGG | + | chr4.3:83630490-83630509 | None:intergenic | 35.0% | |
| AGATGCAACAAACCTGATAA+AGG | + | chr4.3:83630501-83630520 | None:intergenic | 35.0% | |
| ATAGTTCAGTTGAAGATTCG+GGG | + | chr4.3:83631197-83631216 | None:intergenic | 35.0% | |
| CACCAATCTTACATGAATCA+AGG | + | chr4.3:83632979-83632998 | None:intergenic | 35.0% | |
| CACTCCTTGAGTCATTAAAA+TGG | - | chr4.3:83632261-83632280 | MS.gene61716:intron | 35.0% | |
| CATTCACACCAATGATTTGA+AGG | + | chr4.3:83631456-83631475 | None:intergenic | 35.0% | |
| CTTGAGTCATTAAAATGGAG+AGG | - | chr4.3:83632266-83632285 | MS.gene61716:intron | 35.0% | |
| GATAGTTCAGTTGAAGATTC+GGG | + | chr4.3:83631198-83631217 | None:intergenic | 35.0% | |
| GATGAGTGAACTTTGTTGAT+TGG | - | chr4.3:83632342-83632361 | MS.gene61716:intron | 35.0% | |
| GCCTATTACCTTCAAATCAT+TGG | - | chr4.3:83631445-83631464 | MS.gene61716:intron | 35.0% | |
| GCTTACGCAGTTATAAATTG+AGG | + | chr4.3:83631353-83631372 | None:intergenic | 35.0% | |
| TACTGTATGGACAATATTGG+GGG | + | chr4.3:83632083-83632102 | None:intergenic | 35.0% | |
| TACTTAAGTTCAACGAGTAG+TGG | + | chr4.3:83631899-83631918 | None:intergenic | 35.0% | |
| TAGCTCATTTGAAAGGTGAT+TGG | - | chr4.3:83632746-83632765 | MS.gene61716:intron | 35.0% | |
| TAGTAATCGTAATCAGCTGT+TGG | - | chr4.3:83632163-83632182 | MS.gene61716:CDS | 35.0% | |
| TGAAACATCACAATAAGGCA+AGG | + | chr4.3:83631036-83631055 | None:intergenic | 35.0% | |
| TGCTGTGAAACATCACAATA+AGG | + | chr4.3:83631041-83631060 | None:intergenic | 35.0% | |
| TGGAAAATACACCAACATCA+TGG | + | chr4.3:83630585-83630604 | None:intergenic | 35.0% | |
| TGGAATCTCTCAATATGAAG+TGG | - | chr4.3:83630445-83630464 | MS.gene61716:intron | 35.0% | |
| TTGCCCTCTTAAATTTGGAA+GGG | - | chr4.3:83631589-83631608 | MS.gene61716:intron | 35.0% | |
| ! | AGATGCAATATTTCTGACAG+AGG | - | chr4.3:83632501-83632520 | MS.gene61716:intron | 35.0% |
| ! | CACACAAGCATATCTTTTGA+AGG | + | chr4.3:83630291-83630310 | None:intergenic | 35.0% |
| ! | GAGATTTTCTTCCATGATGT+TGG | - | chr4.3:83630571-83630590 | MS.gene61716:intron | 35.0% |
| ! | GATGCAATATTTCTGACAGA+GGG | - | chr4.3:83632502-83632521 | MS.gene61716:intron | 35.0% |
| ! | GCATGTTTAGCTCATTTGAA+AGG | - | chr4.3:83632739-83632758 | MS.gene61716:intron | 35.0% |
| ! | TCTTGTTAACTTGGTCAAGT+TGG | - | chr4.3:83630127-83630146 | MS.gene61716:CDS | 35.0% |
| ! | TGCATCCTTTTGATCACAAT+AGG | - | chr4.3:83630521-83630540 | MS.gene61716:intron | 35.0% |
| ! | TTCCGTTTTCAATGTTGTCT+TGG | - | chr4.3:83631544-83631563 | MS.gene61716:intron | 35.0% |
| ! | TTTGGCATCAGTTTTCTAAG+AGG | - | chr4.3:83630998-83631017 | MS.gene61716:intron | 35.0% |
| !! | CTCTCCATTTTAATGACTCA+AGG | + | chr4.3:83632268-83632287 | None:intergenic | 35.0% |
| !! | GTTGATGGTAACATTTACCT+TGG | - | chr4.3:83632655-83632674 | MS.gene61716:CDS | 35.0% |
| !! | TAACTTGGTCAAGTTGGATT+TGG | - | chr4.3:83630133-83630152 | MS.gene61716:CDS | 35.0% |
| !! | TAAGATTGGTGATGAAGGAT+TGG | - | chr4.3:83632988-83633007 | MS.gene61716:CDS | 35.0% |
| !! | TCATGTAAGATTGGTGATGA+AGG | - | chr4.3:83632983-83633002 | MS.gene61716:CDS | 35.0% |
| AACTTGGGTGGAATATGAGT+GGG | + | chr4.3:83630652-83630671 | None:intergenic | 40.0% | |
| AGTAAGAAAAATATCGGGGG+AGG | - | chr4.3:83631915-83631934 | MS.gene61716:intron | 40.0% | |
| ATGTTGTCTTGGTTCATTCC+AGG | - | chr4.3:83631555-83631574 | MS.gene61716:intron | 40.0% | |
| CAAATCATTGGTGTGAATGC+AGG | - | chr4.3:83631457-83631476 | MS.gene61716:intron | 40.0% | |
| CAAGTTAACAAGACCAGAGA+AGG | + | chr4.3:83630120-83630139 | None:intergenic | 40.0% | |
| CACTCAATGCCTTTCAACTT+GGG | + | chr4.3:83630667-83630686 | None:intergenic | 40.0% | |
| CATGCACAGAGACAAGTATA+TGG | + | chr4.3:83630751-83630770 | None:intergenic | 40.0% | |
| CTTGCCCTCTTAAATTTGGA+AGG | - | chr4.3:83631588-83631607 | MS.gene61716:intron | 40.0% | |
| CTTGTCAAGCTTGTAAGTTC+TGG | + | chr4.3:83630855-83630874 | None:intergenic | 40.0% | |
| GAAGCTTGCCCTCTTAAATT+TGG | - | chr4.3:83631584-83631603 | MS.gene61716:intron | 40.0% | |
| GACACCCTTCCAAATTTAAG+AGG | + | chr4.3:83631596-83631615 | None:intergenic | 40.0% | |
| GCAAGGGTTGGAGAAATAAA+AGG | + | chr4.3:83632218-83632237 | None:intergenic | 40.0% | |
| GGGTTGGAGAAATAAAAGGT+TGG | + | chr4.3:83632214-83632233 | None:intergenic | 40.0% | |
| TCACTCAATGCCTTTCAACT+TGG | + | chr4.3:83630668-83630687 | None:intergenic | 40.0% | |
| TCCGATATGAAGCCTTTATC+AGG | - | chr4.3:83630486-83630505 | MS.gene61716:intron | 40.0% | |
| TCGTAATCAGCTGTTGGAAA+TGG | - | chr4.3:83632169-83632188 | MS.gene61716:intron | 40.0% | |
| TCTGGCCTATTGTGATCAAA+AGG | + | chr4.3:83630529-83630548 | None:intergenic | 40.0% | |
| TCTTGTAACATCTGCATGCT+TGG | - | chr4.3:83631614-83631633 | MS.gene61716:intron | 40.0% | |
| TGCACCTCTTTACCTGTTAA+AGG | - | chr4.3:83631482-83631501 | MS.gene61716:intron | 40.0% | |
| TGCTCAAATCAGAATCTGCT+TGG | + | chr4.3:83631874-83631893 | None:intergenic | 40.0% | |
| ! | AGATTCAAGTTTGACAGTGC+AGG | + | chr4.3:83632477-83632496 | None:intergenic | 40.0% |
| ! | CATATTCCACCCAAGTTGAA+AGG | - | chr4.3:83630655-83630674 | MS.gene61716:intron | 40.0% |
| ! | GATTCAAGTTTGACAGTGCA+GGG | + | chr4.3:83632476-83632495 | None:intergenic | 40.0% |
| ! | TGATGAAGGATTGGTGAACT+TGG | - | chr4.3:83632997-83633016 | MS.gene61716:CDS | 40.0% |
| !! | CTTCTCTGGTCTTGTTAACT+TGG | - | chr4.3:83630118-83630137 | MS.gene61716:CDS | 40.0% |
| !! | GCACTGTTCATTTTCAAGGT+TGG | - | chr4.3:83630180-83630199 | MS.gene61716:intron | 40.0% |
| AGCACTCAACCAGTGAAGAA+AGG | + | chr4.3:83631800-83631819 | None:intergenic | 45.0% | |
| AGCTGTTGGAAATGGTAGTC+GGG | - | chr4.3:83632177-83632196 | MS.gene61716:intron | 45.0% | |
| AGGAGTGACAAGACAGTTTG+AGG | + | chr4.3:83632248-83632267 | None:intergenic | 45.0% | |
| CAACTTGGGTGGAATATGAG+TGG | + | chr4.3:83630653-83630672 | None:intergenic | 45.0% | |
| CAGCTGTTGGAAATGGTAGT+CGG | - | chr4.3:83632176-83632195 | MS.gene61716:intron | 45.0% | |
| CCAGTCCTGTAAAAGAACCA+AGG | + | chr4.3:83632675-83632694 | None:intergenic | 45.0% | |
| CTTGTCAAGCTTGCAAGTTC+TGG | + | chr4.3:83630947-83630966 | None:intergenic | 45.0% | |
| GCATGCTTGGATTCACTTTC+AGG | - | chr4.3:83631627-83631646 | MS.gene61716:intron | 45.0% | |
| GGAGTGACAAGACAGTTTGA+GGG | + | chr4.3:83632247-83632266 | None:intergenic | 45.0% | |
| GGCTCCGAAACAGTTATTGT+AGG | - | chr4.3:83632629-83632648 | MS.gene61716:CDS | 45.0% | |
| TCAATGCCTTTCAACTTGGG+TGG | + | chr4.3:83630664-83630683 | None:intergenic | 45.0% | |
| TGGATTTGGAGAGATGTCCT+GGG | - | chr4.3:83630147-83630166 | MS.gene61716:CDS | 45.0% | |
| TTGGATTTGGAGAGATGTCC+TGG | - | chr4.3:83630146-83630165 | MS.gene61716:CDS | 45.0% | |
| ! | TTTCTGACAGAGGGTGTGAT+AGG | - | chr4.3:83632511-83632530 | MS.gene61716:intron | 45.0% |
| !! | CCTTGGTTCTTTTACAGGAC+TGG | - | chr4.3:83632672-83632691 | MS.gene61716:CDS | 45.0% |
| !!! | GGAGGCACTGTTCATTTTCA+AGG | - | chr4.3:83630176-83630195 | MS.gene61716:intron | 45.0% |
| AGATGTCCTGGGATTCATGG+AGG | - | chr4.3:83630158-83630177 | MS.gene61716:CDS | 50.0% | |
| AGGGCAAGCTTCTGTAATCC+TGG | + | chr4.3:83631576-83631595 | None:intergenic | 50.0% | |
| GAGAGATGTCCTGGGATTCA+TGG | - | chr4.3:83630155-83630174 | MS.gene61716:CDS | 50.0% | |
| GCTGTTGGAAATGGTAGTCG+GGG | - | chr4.3:83632178-83632197 | MS.gene61716:intron | 50.0% | |
| GTGACAAGACAGTTTGAGGG+AGG | + | chr4.3:83632244-83632263 | None:intergenic | 50.0% | |
| ! | AGTTTGAGGGAGGAGTGCAA+GGG | + | chr4.3:83632234-83632253 | None:intergenic | 50.0% |
| ACAGTGCCTCCATGAATCCC+AGG | + | chr4.3:83630167-83630186 | None:intergenic | 55.0% | |
| TTCTCGGGTGGGAGAGTAGT+GGG | - | chr4.3:83632000-83632019 | MS.gene61716:intron | 55.0% | |
| TTTCTCGGGTGGGAGAGTAG+TGG | - | chr4.3:83631999-83632018 | MS.gene61716:intron | 55.0% | |
| TTTGACAGTGCAGGGAGCTC+TGG | + | chr4.3:83632468-83632487 | None:intergenic | 55.0% | |
| ! | CAGTTTGAGGGAGGAGTGCA+AGG | + | chr4.3:83632235-83632254 | None:intergenic | 55.0% |
| !! | TATTGGGGGCGCCCCAATAT+TGG | + | chr4.3:83632069-83632088 | None:intergenic | 55.0% |
| ! | TGAGGGAGGAGTGCAAGGGT+TGG | + | chr4.3:83632230-83632249 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 83630110 | 83633022 | 83630110 | ID=MS.gene61716 |
| chr4.3 | mRNA | 83630110 | 83633022 | 83630110 | ID=MS.gene61716.t1;Parent=MS.gene61716 |
| chr4.3 | exon | 83632935 | 83633022 | 83632935 | ID=MS.gene61716.t1.exon1;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83632935 | 83633022 | 83632935 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| chr4.3 | exon | 83632625 | 83632699 | 83632625 | ID=MS.gene61716.t1.exon2;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83632625 | 83632699 | 83632625 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| chr4.3 | exon | 83632113 | 83632184 | 83632113 | ID=MS.gene61716.t1.exon3;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83632113 | 83632184 | 83632113 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| chr4.3 | exon | 83631484 | 83631555 | 83631484 | ID=MS.gene61716.t1.exon4;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83631484 | 83631555 | 83631484 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| chr4.3 | exon | 83630592 | 83630663 | 83630592 | ID=MS.gene61716.t1.exon5;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83630592 | 83630663 | 83630592 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| chr4.3 | exon | 83630372 | 83630443 | 83630372 | ID=MS.gene61716.t1.exon6;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83630372 | 83630443 | 83630372 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| chr4.3 | exon | 83630110 | 83630181 | 83630110 | ID=MS.gene61716.t1.exon7;Parent=MS.gene61716.t1 |
| chr4.3 | CDS | 83630110 | 83630181 | 83630110 | ID=cds.MS.gene61716.t1;Parent=MS.gene61716.t1 |
| Gene Sequence |
| Protein sequence |
