Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060855.t1 | XP_024641885.1 | 100 | 225 | 0 | 0 | 1 | 225 | 1 | 225 | 2.30E-118 | 434.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060855.t1 | Q9SZ96 | 84.5 | 226 | 35 | 0 | 1 | 226 | 1 | 226 | 2.5e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060855.t1 | G7IBV3 | 100.0 | 225 | 0 | 0 | 1 | 225 | 1 | 225 | 1.7e-118 | 434.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050009 | MS.gene060855 | 0.810289 | 1.24E-50 | -1.69E-46 |
| MS.gene055331 | MS.gene060855 | 0.815757 | 7.85E-52 | -1.69E-46 |
| MS.gene060855 | MS.gene27047 | 0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene060855 | MS.gene32853 | 0.813318 | 2.72E-51 | -1.69E-46 |
| MS.gene060855 | MS.gene37459 | 0.825216 | 5.29E-54 | -1.69E-46 |
| MS.gene060855 | MS.gene58096 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene060855 | MS.gene67231 | 0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene060855 | MS.gene70240 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene060855 | MS.gene83234 | 0.800362 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060855.t1 | MTR_1g098240 | 100.000 | 225 | 0 | 0 | 1 | 225 | 1 | 225 | 4.99e-165 | 458 |
| MS.gene060855.t1 | MTR_3g095130 | 76.444 | 225 | 53 | 0 | 1 | 225 | 1 | 225 | 3.00e-127 | 363 |
| MS.gene060855.t1 | MTR_8g092190 | 73.333 | 225 | 60 | 0 | 1 | 225 | 1 | 225 | 7.18e-122 | 349 |
| MS.gene060855.t1 | MTR_3g095130 | 77.273 | 176 | 40 | 0 | 50 | 225 | 1 | 176 | 2.66e-98 | 288 |
| MS.gene060855.t1 | MTR_1g026590 | 55.399 | 213 | 93 | 1 | 16 | 226 | 14 | 226 | 1.34e-63 | 201 |
| MS.gene060855.t1 | MTR_5g004620 | 53.704 | 216 | 96 | 3 | 8 | 219 | 7 | 222 | 1.92e-62 | 199 |
| MS.gene060855.t1 | MTR_2g094640 | 37.915 | 211 | 131 | 0 | 16 | 226 | 13 | 223 | 6.49e-41 | 143 |
| MS.gene060855.t1 | MTR_4g058860 | 36.893 | 206 | 130 | 0 | 16 | 221 | 13 | 218 | 4.96e-38 | 135 |
| MS.gene060855.t1 | MTR_3g094270 | 38.947 | 190 | 116 | 0 | 32 | 221 | 29 | 218 | 4.43e-35 | 127 |
| MS.gene060855.t1 | MTR_3g094260 | 38.743 | 191 | 115 | 2 | 32 | 221 | 29 | 218 | 8.85e-33 | 121 |
| MS.gene060855.t1 | MTR_2g038410 | 29.665 | 209 | 143 | 1 | 4 | 208 | 45 | 253 | 3.07e-20 | 88.2 |
| MS.gene060855.t1 | MTR_5g096310 | 29.386 | 228 | 143 | 4 | 4 | 222 | 46 | 264 | 2.73e-16 | 77.0 |
| MS.gene060855.t1 | MTR_1291s0010 | 40.659 | 91 | 54 | 0 | 16 | 106 | 13 | 103 | 3.60e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060855.t1 | AT4G09810 | 84.513 | 226 | 35 | 0 | 1 | 226 | 1 | 226 | 2.40e-145 | 405 |
| MS.gene060855.t1 | AT4G09810 | 84.513 | 226 | 35 | 0 | 1 | 226 | 1 | 226 | 3.06e-143 | 403 |
| MS.gene060855.t1 | AT1G34020 | 84.513 | 226 | 35 | 0 | 1 | 226 | 1 | 226 | 9.07e-133 | 377 |
| MS.gene060855.t1 | AT1G34020 | 84.513 | 226 | 35 | 0 | 1 | 226 | 1 | 226 | 9.07e-133 | 377 |
| MS.gene060855.t1 | AT1G34020 | 84.513 | 226 | 35 | 0 | 1 | 226 | 1 | 226 | 9.07e-133 | 377 |
| MS.gene060855.t1 | AT4G39390 | 77.778 | 225 | 50 | 0 | 2 | 226 | 3 | 227 | 5.83e-121 | 347 |
| MS.gene060855.t1 | AT4G39390 | 77.778 | 225 | 50 | 0 | 2 | 226 | 7 | 231 | 9.36e-121 | 347 |
| MS.gene060855.t1 | AT4G39390 | 77.778 | 225 | 50 | 0 | 2 | 226 | 7 | 231 | 9.36e-121 | 347 |
| MS.gene060855.t1 | AT4G09810 | 85.207 | 169 | 25 | 0 | 58 | 226 | 1 | 169 | 2.08e-106 | 308 |
| MS.gene060855.t1 | AT5G42420 | 51.786 | 224 | 106 | 1 | 2 | 223 | 3 | 226 | 1.35e-70 | 219 |
| MS.gene060855.t1 | AT1G21070 | 54.054 | 222 | 99 | 2 | 1 | 219 | 1 | 222 | 2.01e-69 | 216 |
| MS.gene060855.t1 | AT1G76670 | 55.300 | 217 | 94 | 2 | 6 | 219 | 5 | 221 | 2.72e-68 | 213 |
| MS.gene060855.t1 | AT1G76670 | 55.300 | 217 | 94 | 2 | 6 | 219 | 5 | 221 | 2.72e-68 | 213 |
| MS.gene060855.t1 | AT2G28315 | 35.266 | 207 | 134 | 0 | 16 | 222 | 13 | 219 | 6.64e-36 | 129 |
| MS.gene060855.t1 | AT2G28315 | 35.266 | 207 | 134 | 0 | 16 | 222 | 13 | 219 | 8.65e-36 | 129 |
| MS.gene060855.t1 | AT2G30460 | 39.583 | 192 | 116 | 0 | 32 | 223 | 29 | 220 | 1.59e-35 | 129 |
| MS.gene060855.t1 | AT2G30460 | 39.583 | 192 | 116 | 0 | 32 | 223 | 29 | 220 | 1.59e-35 | 129 |
| MS.gene060855.t1 | AT1G06890 | 39.062 | 192 | 117 | 0 | 32 | 223 | 29 | 220 | 1.77e-35 | 129 |
| MS.gene060855.t1 | AT1G06890 | 39.062 | 192 | 117 | 0 | 32 | 223 | 29 | 220 | 1.85e-35 | 129 |
| MS.gene060855.t1 | AT1G06890 | 39.062 | 192 | 117 | 0 | 32 | 223 | 29 | 220 | 1.85e-35 | 129 |
| MS.gene060855.t1 | AT1G06890 | 39.062 | 192 | 117 | 0 | 32 | 223 | 29 | 220 | 1.85e-35 | 129 |
| MS.gene060855.t1 | AT2G30460 | 39.583 | 192 | 116 | 0 | 32 | 223 | 29 | 220 | 3.58e-35 | 127 |
| MS.gene060855.t1 | AT2G30460 | 38.333 | 180 | 111 | 0 | 44 | 223 | 20 | 199 | 4.08e-30 | 114 |
| MS.gene060855.t1 | AT2G30460 | 38.333 | 180 | 111 | 0 | 44 | 223 | 20 | 199 | 4.08e-30 | 114 |
| MS.gene060855.t1 | AT2G30460 | 38.333 | 180 | 111 | 0 | 44 | 223 | 20 | 199 | 4.08e-30 | 114 |
| MS.gene060855.t1 | AT5G42420 | 48.598 | 107 | 53 | 1 | 2 | 106 | 3 | 109 | 1.39e-25 | 101 |
| MS.gene060855.t1 | AT5G55950 | 33.679 | 193 | 124 | 2 | 20 | 208 | 63 | 255 | 1.43e-21 | 90.9 |
| MS.gene060855.t1 | AT5G55950 | 33.679 | 193 | 124 | 2 | 20 | 208 | 3 | 195 | 5.74e-21 | 89.7 |
| MS.gene060855.t1 | AT5G55950 | 31.579 | 209 | 139 | 2 | 4 | 208 | 47 | 255 | 9.09e-21 | 89.7 |
| MS.gene060855.t1 | AT5G57100 | 28.866 | 194 | 132 | 2 | 20 | 208 | 70 | 262 | 2.34e-16 | 76.6 |
| MS.gene060855.t1 | AT5G57100 | 27.230 | 213 | 147 | 3 | 3 | 208 | 51 | 262 | 9.17e-16 | 75.9 |
| MS.gene060855.t1 | AT5G55950 | 31.319 | 182 | 111 | 2 | 36 | 208 | 1 | 177 | 6.23e-15 | 72.8 |
| MS.gene060855.t1 | AT5G57100 | 30.120 | 166 | 108 | 3 | 3 | 161 | 51 | 215 | 9.56e-14 | 68.9 |
Find 47 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATAGGTATTGTTCTTT+TGG | 0.204855 | 1.1:-70605147 | MS.gene060855:CDS |
| ACTAAGTTCTTTCAACCTTT+TGG | 0.208492 | 1.1:-70603890 | MS.gene060855:CDS |
| GGCTGGATCACTATTGTTAT+TGG | 0.217609 | 1.1:-70603848 | MS.gene060855:CDS |
| TTTGCTAACTTCTCTATTGT+TGG | 0.273526 | 1.1:-70605377 | MS.gene060855:CDS |
| CTGCTTATTGGAAGTTTGTT+TGG | 0.283114 | 1.1:-70605201 | MS.gene060855:CDS |
| TTCTTCTCAGCTTTGCTTGA+AGG | 0.285443 | 1.1:+70605754 | None:intergenic |
| TGGGCCCTCTTCTAGACTAT+TGG | 0.285839 | 1.1:-70603828 | MS.gene060855:CDS |
| GATCCCTGTATCCTGCTTAT+TGG | 0.289081 | 1.1:-70605213 | MS.gene060855:CDS |
| GGTGGTTATGGCTTCAGTTT+TGG | 0.294456 | 1.1:-70605652 | MS.gene060855:intron |
| TTCTTACGATGCAGCCTCTT+TGG | 0.298652 | 1.1:-70603779 | None:intergenic |
| CATTGTAAACAAAGCTTTGA+TGG | 0.302927 | 1.1:-70605674 | MS.gene060855:CDS |
| TACAGGGATCATACTCAATT+TGG | 0.310691 | 1.1:+70605226 | None:intergenic |
| CTATCATGACGCTCGTACTA+CGG | 0.348850 | 1.1:-70605460 | MS.gene060855:CDS |
| AAAGCTTTGATGGGTGGTTA+TGG | 0.350738 | 1.1:-70605664 | MS.gene060855:CDS |
| TGTACTCCACACTGCTATAA+AGG | 0.366189 | 1.1:+70605067 | None:intergenic |
| GCTGGATCACTATTGTTATT+GGG | 0.390290 | 1.1:-70603847 | MS.gene060855:CDS |
| ACTTCCAATAAGCAGGATAC+AGG | 0.411849 | 1.1:+70605209 | None:intergenic |
| GCCTGCAGCTACAACGTTAA+CGG | 0.427426 | 1.1:-70605504 | MS.gene060855:intron |
| GACGCTCGTACTACGGGTGC+TGG | 0.431582 | 1.1:-70605453 | MS.gene060855:CDS |
| TTCAATGTTGTCACATCTGT+TGG | 0.444323 | 1.1:-70605703 | MS.gene060855:CDS |
| CATCCATGCCGCAGCATCTA+CGG | 0.452040 | 1.1:+70605726 | None:intergenic |
| TTCAAGCAAAGCTGAGAAGA+AGG | 0.460573 | 1.1:-70605752 | MS.gene060855:CDS |
| TATCATGACGCTCGTACTAC+GGG | 0.465542 | 1.1:-70605459 | MS.gene060855:CDS |
| AGTTTAATGTGGAACTCAGT+TGG | 0.467237 | 1.1:-70605344 | MS.gene060855:CDS |
| CCTGCAGCTACAACGTTAAC+GGG | 0.498929 | 1.1:-70605503 | MS.gene060855:intron |
| CAAACAAACTTCCAATAAGC+AGG | 0.516695 | 1.1:+70605202 | None:intergenic |
| GTCAACCAATAGTCTAGAAG+AGG | 0.519084 | 1.1:+70603823 | None:intergenic |
| CATACAGCACCCGCACAGGC+TGG | 0.523624 | 1.1:-70603865 | MS.gene060855:CDS |
| ATTGTAAACAAAGCTTTGAT+GGG | 0.537492 | 1.1:-70605673 | MS.gene060855:CDS |
| CAGCCGTAGATGCTGCGGCA+TGG | 0.544538 | 1.1:-70605729 | MS.gene060855:CDS |
| AATAGTGATCCAGCCTGTGC+GGG | 0.549143 | 1.1:+70603856 | None:intergenic |
| GACGTAAGTGTAAACATGAA+AGG | 0.563776 | 1.1:-70605101 | MS.gene060855:CDS |
| GTAAACAAAGCTTTGATGGG+TGG | 0.567414 | 1.1:-70605670 | MS.gene060855:CDS |
| CGGGTGCTGTATGTCCCAAA+AGG | 0.569410 | 1.1:+70603875 | None:intergenic |
| AGTATGTTCATTATCTTCAA+CGG | 0.576478 | 1.1:-70603921 | MS.gene060855:CDS |
| CTTCCAATAAGCAGGATACA+GGG | 0.577864 | 1.1:+70605210 | None:intergenic |
| TCGGACAATGGAAGATGAGA+TGG | 0.578480 | 1.1:+70605419 | None:intergenic |
| GGGACATACAGCACCCGCAC+AGG | 0.586372 | 1.1:-70603869 | MS.gene060855:CDS |
| GAATGAATGTCAGTTTAATG+TGG | 0.588693 | 1.1:-70605355 | MS.gene060855:CDS |
| ACAATGGAAGATGAGATGGC+TGG | 0.591393 | 1.1:+70605423 | None:intergenic |
| ACGCTCGTACTACGGGTGCT+GGG | 0.598648 | 1.1:-70605452 | MS.gene060855:CDS |
| CAATAGTGATCCAGCCTGTG+CGG | 0.599047 | 1.1:+70603855 | None:intergenic |
| AGAGACACAAAACTGAGCAT+AGG | 0.624573 | 1.1:-70605161 | MS.gene060855:CDS |
| GAAGGCAGCCGTAGATGCTG+CGG | 0.628788 | 1.1:-70605734 | MS.gene060855:CDS |
| TTATCCAGAACTTACCAAAG+AGG | 0.632878 | 1.1:+70603765 | None:intergenic |
| TCAACCAATAGTCTAGAAGA+GGG | 0.636120 | 1.1:+70603824 | None:intergenic |
| TTGCGGCCTTTATAGCAGTG+TGG | 0.653992 | 1.1:-70605073 | MS.gene060855:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGTAAATAAACAATTTA+AGG | + | chr1.1:70604954-70604973 | None:intergenic | 15.0% |
| !! | ATAAAGCAAATCATACTTAA+AGG | + | chr1.1:70604015-70604034 | None:intergenic | 20.0% |
| !! | CAGAAATATCATTAAGAAAT+TGG | + | chr1.1:70603926-70603945 | None:intergenic | 20.0% |
| !!! | AAAGAAACAAATTTAACTTC+TGG | + | chr1.1:70604276-70604295 | None:intergenic | 20.0% |
| !!! | AAGTTTTATGATATATCAAC+TGG | + | chr1.1:70603972-70603991 | None:intergenic | 20.0% |
| !!! | AGTTTTATGATATATCAACT+GGG | + | chr1.1:70603971-70603990 | None:intergenic | 20.0% |
| !!! | GAAAACAAATTTTAGAAGTT+CGG | + | chr1.1:70604143-70604162 | None:intergenic | 20.0% |
| !!! | GTATTTGTTTCTTAGAATTT+GGG | - | chr1.1:70604550-70604569 | MS.gene060855:intron | 20.0% |
| !!! | TGTATTTGTTTCTTAGAATT+TGG | - | chr1.1:70604549-70604568 | MS.gene060855:intron | 20.0% |
| ! | AGAAATCTATAGATGGAATT+GGG | - | chr1.1:70605126-70605145 | MS.gene060855:CDS | 25.0% |
| ! | AGTATGTTCATTATCTTCAA+CGG | - | chr1.1:70605619-70605638 | MS.gene060855:intron | 25.0% |
| ! | ATGGCAGTTAAAATTCTAAA+TGG | + | chr1.1:70605101-70605120 | None:intergenic | 25.0% |
| ! | GATACTATCTTAGAATTTGA+GGG | - | chr1.1:70605284-70605303 | MS.gene060855:intron | 25.0% |
| ! | GGATTAAAAATTAGATGCTT+GGG | + | chr1.1:70605075-70605094 | None:intergenic | 25.0% |
| ! | TGATACTATCTTAGAATTTG+AGG | - | chr1.1:70605283-70605302 | MS.gene060855:intron | 25.0% |
| !! | AAGCATCTAATTTTTAATCC+GGG | - | chr1.1:70605075-70605094 | MS.gene060855:CDS | 25.0% |
| !! | ACGTGATTCAATTTTTAATG+CGG | + | chr1.1:70604744-70604763 | None:intergenic | 25.0% |
| !! | ATTGTAAACAAAGCTTTGAT+GGG | - | chr1.1:70603867-70603886 | MS.gene060855:CDS | 25.0% |
| !! | CAAGCATCTAATTTTTAATC+CGG | - | chr1.1:70605074-70605093 | MS.gene060855:CDS | 25.0% |
| !! | TAAATGAAGGGTATACTAAA+TGG | + | chr1.1:70604669-70604688 | None:intergenic | 25.0% |
| !! | TTTAGACTTTCAATTTTGTG+CGG | - | chr1.1:70604975-70604994 | MS.gene060855:intron | 25.0% |
| !!! | ATTTGTTTCTTTTTGACCAT+TGG | - | chr1.1:70604284-70604303 | MS.gene060855:intron | 25.0% |
| AAGCAAATCATACTTAAAGG+AGG | + | chr1.1:70604012-70604031 | None:intergenic | 30.0% | |
| ACCTAAGTCATATCTTTGTT+CGG | - | chr1.1:70605377-70605396 | MS.gene060855:CDS | 30.0% | |
| ACTAACTTAATCCCACAAAT+CGG | - | chr1.1:70605313-70605332 | MS.gene060855:intron | 30.0% | |
| AGTTAAAATTCTAAATGGCC+CGG | + | chr1.1:70605096-70605115 | None:intergenic | 30.0% | |
| ATCAGAAACGAATACTAATG+CGG | - | chr1.1:70605439-70605458 | MS.gene060855:CDS | 30.0% | |
| ATCTATAGATTTCTGACACA+TGG | + | chr1.1:70605120-70605139 | None:intergenic | 30.0% | |
| ATGTGTCAGAAATCTATAGA+TGG | - | chr1.1:70605119-70605138 | MS.gene060855:CDS | 30.0% | |
| CAGAAATCTATAGATGGAAT+TGG | - | chr1.1:70605125-70605144 | MS.gene060855:CDS | 30.0% | |
| CCCATTAATATTGAATGCTA+CGG | + | chr1.1:70605579-70605598 | None:intergenic | 30.0% | |
| CCGTAGCATTCAATATTAAT+GGG | - | chr1.1:70605576-70605595 | MS.gene060855:intron | 30.0% | |
| CGGATTAAAAATTAGATGCT+TGG | + | chr1.1:70605076-70605095 | None:intergenic | 30.0% | |
| GAATGAATGTCAGTTTAATG+TGG | - | chr1.1:70604185-70604204 | MS.gene060855:intron | 30.0% | |
| GACACCATATACCAATTAAA+AGG | + | chr1.1:70605530-70605549 | None:intergenic | 30.0% | |
| TAGTGCCTAAAAATAAGGTT+TGG | + | chr1.1:70605358-70605377 | None:intergenic | 30.0% | |
| TATCTTAGAATTTGAGGGTA+GGG | - | chr1.1:70605289-70605308 | MS.gene060855:intron | 30.0% | |
| TCCGTAGCATTCAATATTAA+TGG | - | chr1.1:70605575-70605594 | MS.gene060855:intron | 30.0% | |
| TGGATTCTATCAAGTAAGTT+CGG | - | chr1.1:70604216-70604235 | MS.gene060855:intron | 30.0% | |
| TGTGTAGACAAGAAAAAACA+AGG | - | chr1.1:70604864-70604883 | MS.gene060855:intron | 30.0% | |
| TTAGGTAGTGCCTAAAAATA+AGG | + | chr1.1:70605363-70605382 | None:intergenic | 30.0% | |
| TTTGCTAACTTCTCTATTGT+TGG | - | chr1.1:70604163-70604182 | MS.gene060855:intron | 30.0% | |
| ! | AAGAATGGACATTTGAAATG+TGG | - | chr1.1:70605213-70605232 | MS.gene060855:CDS | 30.0% |
| ! | ACTAAGTTCTTTCAACCTTT+TGG | - | chr1.1:70605650-70605669 | MS.gene060855:intron | 30.0% |
| ! | AGAATGGACATTTGAAATGT+GGG | - | chr1.1:70605214-70605233 | MS.gene060855:CDS | 30.0% |
| ! | CATTGTAAACAAAGCTTTGA+TGG | - | chr1.1:70603866-70603885 | MS.gene060855:CDS | 30.0% |
| ! | CGTGATTCAATTTTTAATGC+GGG | + | chr1.1:70604743-70604762 | None:intergenic | 30.0% |
| ! | CTAAGTTCTTTCAACCTTTT+GGG | - | chr1.1:70605651-70605670 | MS.gene060855:intron | 30.0% |
| ! | CTATCAACACTCCTTTTAAT+TGG | - | chr1.1:70605516-70605535 | MS.gene060855:intron | 30.0% |
| ! | GAAACAAATTTAACTTCTGG+AGG | + | chr1.1:70604273-70604292 | None:intergenic | 30.0% |
| ! | GTTTCTTAGAATTTGGGTTT+GGG | - | chr1.1:70604556-70604575 | MS.gene060855:intron | 30.0% |
| ! | TGTTTCTTAGAATTTGGGTT+TGG | - | chr1.1:70604555-70604574 | MS.gene060855:intron | 30.0% |
| ! | TTAGACTTTCAATTTTGTGC+GGG | - | chr1.1:70604976-70604995 | MS.gene060855:intron | 30.0% |
| ! | TTTCTTAGAATTTGGGTTTG+GGG | - | chr1.1:70604557-70604576 | MS.gene060855:intron | 30.0% |
| !! | AATTTTAGAAGTTCGGACAA+TGG | + | chr1.1:70604136-70604155 | None:intergenic | 30.0% |
| !! | AGCATAGGTATTGTTCTTTT+GGG | - | chr1.1:70604394-70604413 | MS.gene060855:intron | 30.0% |
| !! | CACTCCTTTTAATTGGTATA+TGG | - | chr1.1:70605523-70605542 | MS.gene060855:intron | 30.0% |
| !!! | AAACATGAAAGGTTTTGTTG+CGG | - | chr1.1:70604450-70604469 | MS.gene060855:intron | 30.0% |
| !!! | ACTGTCCAAACCTTATTTTT+AGG | - | chr1.1:70605350-70605369 | MS.gene060855:CDS | 30.0% |
| AAGCATCTAATGTATCTGTG+CGG | - | chr1.1:70605027-70605046 | MS.gene060855:intron | 35.0% | |
| ACCGAACAAAGATATGACTT+AGG | + | chr1.1:70605381-70605400 | None:intergenic | 35.0% | |
| AGATGGAATTGGGTAAATAG+AGG | - | chr1.1:70605136-70605155 | MS.gene060855:CDS | 35.0% | |
| AGTTTAATGTGGAACTCAGT+TGG | - | chr1.1:70604196-70604215 | MS.gene060855:intron | 35.0% | |
| ATCTCTCTCACACTTAAGAA+TGG | - | chr1.1:70605198-70605217 | MS.gene060855:CDS | 35.0% | |
| ATCTTAGAATTTGAGGGTAG+GGG | - | chr1.1:70605290-70605309 | MS.gene060855:intron | 35.0% | |
| CAAACAAACTTCCAATAAGC+AGG | + | chr1.1:70604341-70604360 | None:intergenic | 35.0% | |
| CTATCTTAGAATTTGAGGGT+AGG | - | chr1.1:70605288-70605307 | MS.gene060855:intron | 35.0% | |
| CTTAAGTGTGAGAGAGATAT+AGG | + | chr1.1:70605196-70605215 | None:intergenic | 35.0% | |
| GAAGGAATTGGGTAAATGAA+GGG | + | chr1.1:70604681-70604700 | None:intergenic | 35.0% | |
| GACGTAAGTGTAAACATGAA+AGG | - | chr1.1:70604439-70604458 | MS.gene060855:intron | 35.0% | |
| GATAGAATCGAACTTTGTTC+AGG | + | chr1.1:70604785-70604804 | None:intergenic | 35.0% | |
| GCTCAAACCTTATAAGAACT+TGG | - | chr1.1:70604620-70604639 | MS.gene060855:intron | 35.0% | |
| GGAAATCTATGGAAGGAATT+GGG | + | chr1.1:70604692-70604711 | None:intergenic | 35.0% | |
| GGTAGTACCAAGTTCTTATA+AGG | + | chr1.1:70604630-70604649 | None:intergenic | 35.0% | |
| TACAGGGATCATACTCAATT+TGG | + | chr1.1:70604317-70604336 | None:intergenic | 35.0% | |
| TCAACCAATAGTCTAGAAGA+GGG | + | chr1.1:70605719-70605738 | None:intergenic | 35.0% | |
| TCAGAAACGAATACTAATGC+GGG | - | chr1.1:70605440-70605459 | MS.gene060855:CDS | 35.0% | |
| TTCAATGTTGTCACATCTGT+TGG | - | chr1.1:70603837-70603856 | MS.gene060855:CDS | 35.0% | |
| ! | CACCTTACAAGTCAATTTTG+AGG | + | chr1.1:70604595-70604614 | None:intergenic | 35.0% |
| ! | CTGCTTATTGGAAGTTTGTT+TGG | - | chr1.1:70604339-70604358 | MS.gene060855:intron | 35.0% |
| ! | GCTGGATCACTATTGTTATT+GGG | - | chr1.1:70605693-70605712 | MS.gene060855:CDS | 35.0% |
| ! | TTTTTCTTGTCTACACAGCA+TGG | + | chr1.1:70604861-70604880 | None:intergenic | 35.0% |
| !! | CACCTCAAAATTGACTTGTA+AGG | - | chr1.1:70604590-70604609 | MS.gene060855:intron | 35.0% |
| !! | GAGCATAGGTATTGTTCTTT+TGG | - | chr1.1:70604393-70604412 | MS.gene060855:intron | 35.0% |
| !! | TTAAAAGGAGTGTTGATAGC+AGG | + | chr1.1:70605515-70605534 | None:intergenic | 35.0% |
| AATGGAGCAAAGTTGAACTC+AGG | + | chr1.1:70604651-70604670 | None:intergenic | 40.0% | |
| ACTTCCAATAAGCAGGATAC+AGG | + | chr1.1:70604334-70604353 | None:intergenic | 40.0% | |
| AGAGACACAAAACTGAGCAT+AGG | - | chr1.1:70604379-70604398 | MS.gene060855:intron | 40.0% | |
| AGCATCTAATGTATCTGTGC+GGG | - | chr1.1:70605028-70605047 | MS.gene060855:intron | 40.0% | |
| ATTTCTACTCGAGTGTGAGA+GGG | + | chr1.1:70605421-70605440 | None:intergenic | 40.0% | |
| CGGAAATCTATGGAAGGAAT+TGG | + | chr1.1:70604693-70604712 | None:intergenic | 40.0% | |
| CTCTTCTCCTTGCCTTTATA+TGG | - | chr1.1:70604807-70604826 | MS.gene060855:intron | 40.0% | |
| CTTCCAATAAGCAGGATACA+GGG | + | chr1.1:70604333-70604352 | None:intergenic | 40.0% | |
| GAAATTTAACTGCCACGTGT+CGG | + | chr1.1:70604713-70604732 | None:intergenic | 40.0% | |
| GGAAGGAATTGGGTAAATGA+AGG | + | chr1.1:70604682-70604701 | None:intergenic | 40.0% | |
| GGCTGGATCACTATTGTTAT+TGG | - | chr1.1:70605692-70605711 | MS.gene060855:CDS | 40.0% | |
| GTCAACCAATAGTCTAGAAG+AGG | + | chr1.1:70605720-70605739 | None:intergenic | 40.0% | |
| TCAATTTGGCAATCTGCCAA+TGG | + | chr1.1:70604303-70604322 | None:intergenic | 40.0% | |
| TGTACTCCACACTGCTATAA+AGG | + | chr1.1:70604476-70604495 | None:intergenic | 40.0% | |
| TTCAAGCAAAGCTGAGAAGA+AGG | - | chr1.1:70603788-70603807 | MS.gene060855:CDS | 40.0% | |
| TTCTTCTCAGCTTTGCTTGA+AGG | + | chr1.1:70603789-70603808 | None:intergenic | 40.0% | |
| ! | AAAGCTTTGATGGGTGGTTA+TGG | - | chr1.1:70603876-70603895 | MS.gene060855:CDS | 40.0% |
| ! | AGTCATATCTTTGTTCGGTG+TGG | - | chr1.1:70605382-70605401 | MS.gene060855:CDS | 40.0% |
| ! | ATGGACATTTGAAATGTGGG+TGG | - | chr1.1:70605217-70605236 | MS.gene060855:CDS | 40.0% |
| ! | GTAAACAAAGCTTTGATGGG+TGG | - | chr1.1:70603870-70603889 | MS.gene060855:CDS | 40.0% |
| !! | CATCTTACTAGCCGATTTGT+GGG | + | chr1.1:70605327-70605346 | None:intergenic | 40.0% |
| !! | GGCTGACTTTCTCTCTATTT+TGG | - | chr1.1:70604237-70604256 | MS.gene060855:intron | 40.0% |
| !! | GGTATTGTTCTTTTGGGAGT+TGG | - | chr1.1:70604400-70604419 | MS.gene060855:intron | 40.0% |
| !! | GTCATATCTTTGTTCGGTGT+GGG | - | chr1.1:70605383-70605402 | MS.gene060855:CDS | 40.0% |
| !! | TCATCTTACTAGCCGATTTG+TGG | + | chr1.1:70605328-70605347 | None:intergenic | 40.0% |
| !! | TTAACTTCTGGAGGCACTAA+TGG | + | chr1.1:70604264-70604283 | None:intergenic | 40.0% |
| ACAATGGAAGATGAGATGGC+TGG | + | chr1.1:70604120-70604139 | None:intergenic | 45.0% | |
| ACGTGTCGGAAATCTATGGA+AGG | + | chr1.1:70604699-70604718 | None:intergenic | 45.0% | |
| CATCTAATGTATCTGTGCGG+GGG | - | chr1.1:70605030-70605049 | MS.gene060855:intron | 45.0% | |
| CTATCATGACGCTCGTACTA+CGG | - | chr1.1:70604080-70604099 | MS.gene060855:intron | 45.0% | |
| GAAACGAATACTAATGCGGG+TGG | - | chr1.1:70605443-70605462 | MS.gene060855:CDS | 45.0% | |
| GATCCCTGTATCCTGCTTAT+TGG | - | chr1.1:70604327-70604346 | MS.gene060855:intron | 45.0% | |
| GATTTCTACTCGAGTGTGAG+AGG | + | chr1.1:70605422-70605441 | None:intergenic | 45.0% | |
| GCATCTAATGTATCTGTGCG+GGG | - | chr1.1:70605029-70605048 | MS.gene060855:intron | 45.0% | |
| TATCATGACGCTCGTACTAC+GGG | - | chr1.1:70604081-70604100 | MS.gene060855:intron | 45.0% | |
| TCGGACAATGGAAGATGAGA+TGG | + | chr1.1:70604124-70604143 | None:intergenic | 45.0% | |
| TTCCATAGATTTCCGACACG+TGG | - | chr1.1:70604698-70604717 | MS.gene060855:intron | 45.0% | |
| ! | GGTGGTTATGGCTTCAGTTT+TGG | - | chr1.1:70603888-70603907 | MS.gene060855:CDS | 45.0% |
| AATAGTGATCCAGCCTGTGC+GGG | + | chr1.1:70605687-70605706 | None:intergenic | 50.0% | |
| AGTGCGCGACGTCCATATAA+AGG | + | chr1.1:70604822-70604841 | None:intergenic | 50.0% | |
| CAATAGTGATCCAGCCTGTG+CGG | + | chr1.1:70605688-70605707 | None:intergenic | 50.0% | |
| CCTGCAGCTACAACGTTAAC+GGG | - | chr1.1:70604037-70604056 | MS.gene060855:intron | 50.0% | |
| GCCTGCAGCTACAACGTTAA+CGG | - | chr1.1:70604036-70604055 | MS.gene060855:intron | 50.0% | |
| GCGACGTCCATATAAAGGCA+AGG | + | chr1.1:70604817-70604836 | None:intergenic | 50.0% | |
| TGCCACGTGTCGGAAATCTA+TGG | + | chr1.1:70604703-70604722 | None:intergenic | 50.0% | |
| TGGGCCCTCTTCTAGACTAT+TGG | - | chr1.1:70605712-70605731 | MS.gene060855:CDS | 50.0% | |
| TGTGCGGGTAAACATCTGTG+CGG | - | chr1.1:70604991-70605010 | MS.gene060855:intron | 50.0% | |
| TTGCGGCCTTTATAGCAGTG+TGG | - | chr1.1:70604467-70604486 | MS.gene060855:intron | 50.0% | |
| CATCCATGCCGCAGCATCTA+CGG | + | chr1.1:70603817-70603836 | None:intergenic | 55.0% | |
| CCCGTTAACGTTGTAGCTGC+AGG | + | chr1.1:70604040-70604059 | None:intergenic | 55.0% | |
| TCTACACAGCATGGCAGCAG+TGG | + | chr1.1:70604852-70604871 | None:intergenic | 55.0% | |
| ! | CGGGTGCTGTATGTCCCAAA+AGG | + | chr1.1:70605668-70605687 | None:intergenic | 55.0% |
| ACGCTCGTACTACGGGTGCT+GGG | - | chr1.1:70604088-70604107 | MS.gene060855:intron | 60.0% | |
| GAAGGCAGCCGTAGATGCTG+CGG | - | chr1.1:70603806-70603825 | MS.gene060855:CDS | 60.0% | |
| CAGCCGTAGATGCTGCGGCA+TGG | - | chr1.1:70603811-70603830 | MS.gene060855:CDS | 65.0% | |
| CATACAGCACCCGCACAGGC+TGG | - | chr1.1:70605675-70605694 | MS.gene060855:CDS | 65.0% | |
| GACGCTCGTACTACGGGTGC+TGG | - | chr1.1:70604087-70604106 | MS.gene060855:intron | 65.0% | |
| GGGACATACAGCACCCGCAC+AGG | - | chr1.1:70605671-70605690 | MS.gene060855:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 70603780 | 70605782 | 70603780 | ID=MS.gene060855 |
| chr1.1 | mRNA | 70603780 | 70605782 | 70603780 | ID=MS.gene060855.t1;Parent=MS.gene060855 |
| chr1.1 | exon | 70605653 | 70605782 | 70605653 | ID=MS.gene060855.t1.exon1;Parent=MS.gene060855.t1 |
| chr1.1 | CDS | 70605653 | 70605782 | 70605653 | ID=cds.MS.gene060855.t1;Parent=MS.gene060855.t1 |
| chr1.1 | exon | 70605334 | 70605518 | 70605334 | ID=MS.gene060855.t1.exon2;Parent=MS.gene060855.t1 |
| chr1.1 | CDS | 70605334 | 70605518 | 70605334 | ID=cds.MS.gene060855.t1;Parent=MS.gene060855.t1 |
| chr1.1 | exon | 70605052 | 70605252 | 70605052 | ID=MS.gene060855.t1.exon3;Parent=MS.gene060855.t1 |
| chr1.1 | CDS | 70605052 | 70605252 | 70605052 | ID=cds.MS.gene060855.t1;Parent=MS.gene060855.t1 |
| chr1.1 | exon | 70603780 | 70603941 | 70603780 | ID=MS.gene060855.t1.exon4;Parent=MS.gene060855.t1 |
| chr1.1 | CDS | 70603780 | 70603941 | 70603780 | ID=cds.MS.gene060855.t1;Parent=MS.gene060855.t1 |
| Gene Sequence |
| Protein sequence |
