AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27047

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27047.t1 MTR_1g024025 95.597 863 35 2 1 863 1 860 0.0 1708
MS.gene27047.t1 MTR_1g024025 78.431 357 24 2 507 863 962 1265 0.0 557
MS.gene27047.t1 MTR_1g024025 47.191 267 82 11 220 472 846 1067 5.61e-40 160
MS.gene27047.t1 MTR_2g018690 67.847 367 114 3 35 398 15 380 5.05e-168 511
MS.gene27047.t1 MTR_5g076270 68.120 367 113 3 35 398 16 381 9.18e-168 508
MS.gene27047.t1 MTR_5g076270 41.060 151 71 3 730 862 670 820 1.06e-25 114
MS.gene27047.t1 MTR_4g124900 72.886 343 90 3 35 376 15 355 1.10e-167 516
MS.gene27047.t1 MTR_4g124900 39.631 217 120 4 634 849 856 1062 6.57e-34 140
MS.gene27047.t1 MTR_4g124900 72.886 343 90 3 35 376 15 355 1.71e-167 516
MS.gene27047.t1 MTR_4g124900 39.631 217 120 4 634 849 879 1085 6.43e-34 141
MS.gene27047.t1 MTR_3g064050 68.219 365 112 3 37 398 20 383 6.14e-167 506
MS.gene27047.t1 MTR_3g064050 42.763 152 84 2 712 862 679 828 3.92e-27 119
MS.gene27047.t1 MTR_2g043250 71.137 343 96 3 35 376 15 355 1.57e-163 506
MS.gene27047.t1 MTR_2g043250 60.952 105 41 0 745 849 974 1078 1.20e-32 137
MS.gene27047.t1 MTR_8g079492 66.757 367 117 4 35 398 15 379 8.86e-161 493
MS.gene27047.t1 MTR_8g079492 50.806 124 61 0 739 862 764 887 9.06e-31 130
MS.gene27047.t1 MTR_8g079492 66.757 367 117 4 35 398 15 379 9.00e-161 493
MS.gene27047.t1 MTR_8g079492 50.806 124 61 0 739 862 763 886 9.12e-31 130
MS.gene27047.t1 MTR_8g101360 68.047 338 107 1 40 376 28 365 1.01e-149 469
MS.gene27047.t1 MTR_8g101360 39.806 206 100 6 649 849 890 1076 4.84e-34 141
MS.gene27047.t1 MTR_8g079492 67.114 298 94 3 104 398 1 297 3.88e-127 402
MS.gene27047.t1 MTR_8g079492 50.806 124 61 0 739 862 681 804 7.51e-31 130
MS.gene27047.t1 MTR_8g100050 53.687 339 154 3 39 376 55 391 2.55e-119 379
MS.gene27047.t1 MTR_2g005240 53.846 338 154 2 39 376 19 354 2.36e-118 374
MS.gene27047.t1 MTR_2g005240 48.387 93 44 3 756 846 546 636 9.41e-18 88.6
MS.gene27047.t1 MTR_8g100050 53.687 339 154 3 39 376 55 391 2.68e-118 379
MS.gene27047.t1 MTR_8g100050 42.857 91 50 2 757 846 710 799 4.96e-15 80.1
MS.gene27047.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 2.37e-112 359
MS.gene27047.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 1.52e-111 359
MS.gene27047.t1 MTR_2g093740 47.143 70 35 2 757 825 682 750 3.20e-14 77.4
MS.gene27047.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 2.78e-111 360
MS.gene27047.t1 MTR_2g093740 42.308 104 58 2 757 859 682 784 4.66e-18 89.7
MS.gene27047.t1 MTR_8g027440 51.009 347 165 4 31 376 16 358 2.80e-111 356
MS.gene27047.t1 MTR_8g027440 41.593 113 57 4 747 855 545 652 1.29e-15 81.6
MS.gene27047.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.03e-108 350
MS.gene27047.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.23e-107 349
MS.gene27047.t1 MTR_2g093740 47.143 70 35 2 757 825 695 763 3.63e-14 77.0
MS.gene27047.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.80e-107 350
MS.gene27047.t1 MTR_2g093740 42.308 104 58 2 757 859 695 797 5.37e-18 89.7
MS.gene27047.t1 MTR_2g014770 50.867 346 147 6 43 376 53 387 1.04e-105 339
MS.gene27047.t1 MTR_4g060460 49.857 349 154 6 43 376 54 396 3.30e-105 343
MS.gene27047.t1 MTR_4g060460 45.055 91 48 2 757 846 658 747 2.53e-18 90.5
MS.gene27047.t1 MTR_4g060460 49.857 349 154 6 43 376 54 396 4.56e-105 343
MS.gene27047.t1 MTR_4g060460 45.055 91 48 2 757 846 663 752 2.48e-18 90.5
MS.gene27047.t1 MTR_2g014770 50.867 346 147 6 43 376 53 387 6.61e-105 339
MS.gene27047.t1 MTR_4g088210 47.721 373 157 8 43 393 38 394 5.76e-104 337
MS.gene27047.t1 MTR_4g088210 47.721 373 157 8 43 393 38 394 6.82e-104 337
MS.gene27047.t1 MTR_4g021580 50.877 342 153 7 41 376 17 349 1.60e-103 334
MS.gene27047.t1 MTR_4g021580 50.877 342 153 7 41 376 17 349 2.68e-103 335
MS.gene27047.t1 MTR_4g021580 41.441 111 59 4 750 859 550 655 1.31e-15 81.6
MS.gene27047.t1 MTR_7g062540 47.384 344 174 5 35 376 6 344 6.68e-100 326
MS.gene27047.t1 MTR_7g062540 42.857 91 49 2 757 846 570 658 1.62e-14 78.2
MS.gene27047.t1 MTR_2g093740 54.032 248 112 2 135 381 27 273 2.47e-83 280
MS.gene27047.t1 MTR_2g093740 47.143 70 35 2 757 825 552 620 2.73e-14 77.4
MS.gene27047.t1 MTR_2g093740 54.032 248 112 2 135 381 27 273 4.03e-83 281
MS.gene27047.t1 MTR_2g093740 42.308 104 58 2 757 859 552 654 3.39e-18 90.1
MS.gene27047.t1 MTR_2g093740 51.341 261 112 3 135 381 27 286 8.02e-80 271
MS.gene27047.t1 MTR_2g093740 47.143 70 35 2 757 825 565 633 2.89e-14 77.4
MS.gene27047.t1 MTR_2g093740 51.341 261 112 3 135 381 27 286 1.26e-79 271
MS.gene27047.t1 MTR_2g093740 42.308 104 58 2 757 859 565 667 3.81e-18 89.7
MS.gene27047.t1 MTR_2g094570 40.741 378 177 8 38 376 6 375 3.54e-79 270
MS.gene27047.t1 MTR_2g094570 40.741 378 177 8 38 376 6 375 6.33e-79 270
MS.gene27047.t1 MTR_1g064430 37.984 387 187 6 36 376 20 399 6.90e-79 270
MS.gene27047.t1 MTR_1g064430 37.984 387 187 6 36 376 33 412 8.42e-79 270
MS.gene27047.t1 MTR_2g094570 40.741 378 177 8 38 376 62 431 1.67e-78 270
MS.gene27047.t1 MTR_4g058930 40.365 384 172 8 40 376 9 382 3.35e-77 265
MS.gene27047.t1 MTR_4g058930 40.365 384 172 8 40 376 9 382 1.00e-76 264
MS.gene27047.t1 MTR_1g094960 38.191 398 196 10 38 394 14 402 2.02e-76 261
MS.gene27047.t1 MTR_7g101280 35.437 412 191 10 36 385 24 422 7.76e-71 246
MS.gene27047.t1 MTR_0041s0110 35.437 412 191 10 36 385 24 422 7.76e-71 246
MS.gene27047.t1 MTR_7g101275 38.050 318 177 6 52 361 1 306 1.92e-66 228
MS.gene27047.t1 MTR_3g073420 36.951 387 200 7 39 387 15 395 2.80e-66 233
MS.gene27047.t1 MTR_8g446900 41.751 297 159 7 84 376 2 288 2.97e-66 226
MS.gene27047.t1 MTR_0041s0120 34.835 333 179 8 52 361 1 318 3.22e-58 205
MS.gene27047.t1 MTR_5g061220 34.688 369 196 10 38 376 14 367 7.64e-57 204
MS.gene27047.t1 MTR_5g040880 32.644 435 246 15 37 457 5 406 1.23e-56 204
MS.gene27047.t1 MTR_5g082140 34.037 379 212 13 38 394 7 369 1.93e-53 193
MS.gene27047.t1 MTR_1g058210 32.153 367 221 10 38 394 7 355 1.69e-49 182
MS.gene27047.t1 MTR_2g024430 35.328 351 180 14 43 376 20 340 1.35e-47 177
MS.gene27047.t1 MTR_3g064050 62.329 146 54 1 254 398 1 146 1.20e-46 177
MS.gene27047.t1 MTR_3g064050 42.763 152 84 2 712 862 442 591 2.05e-27 119
MS.gene27047.t1 MTR_2g006270 33.333 339 206 10 43 376 13 336 6.01e-43 163
MS.gene27047.t1 MTR_2g006380 30.347 346 208 12 40 376 17 338 2.45e-40 155
MS.gene27047.t1 MTR_5g040740 32.622 328 186 11 40 355 9 313 4.25e-40 153
MS.gene27047.t1 MTR_5g060630 31.658 398 212 16 38 396 7 383 2.21e-38 151
MS.gene27047.t1 MTR_5g460740 31.658 398 212 16 38 396 7 383 2.21e-38 151
MS.gene27047.t1 MTR_5g032260 50.993 151 65 2 247 397 30 171 4.11e-37 145
MS.gene27047.t1 MTR_5g074840 47.059 187 63 4 125 307 7 161 3.20e-36 134
MS.gene27047.t1 MTR_5g060780 29.107 347 216 10 40 376 9 335 6.18e-33 132
MS.gene27047.t1 MTR_5g460920 29.226 349 213 12 40 376 9 335 1.17e-32 131
MS.gene27047.t1 MTR_5g062970 34.300 207 127 4 39 242 34 234 3.85e-32 125
MS.gene27047.t1 MTR_5g061890 29.107 347 216 10 40 376 9 335 4.77e-32 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27047.t1 AT1G19850 59.280 889 293 20 19 861 21 886 0.0 971
MS.gene27047.t1 AT1G19850 59.280 889 293 20 19 861 32 897 0.0 971
MS.gene27047.t1 AT1G30330 67.925 371 115 3 31 398 11 380 7.93e-168 511
MS.gene27047.t1 AT1G30330 51.667 120 58 0 737 856 774 893 4.32e-31 132
MS.gene27047.t1 AT1G30330 67.655 371 116 3 31 398 13 382 1.03e-166 509
MS.gene27047.t1 AT1G30330 51.667 120 58 0 737 856 776 895 4.80e-31 131
MS.gene27047.t1 AT1G30330 67.655 371 116 3 31 398 13 382 1.03e-166 509
MS.gene27047.t1 AT1G30330 51.667 120 58 0 737 856 776 895 4.80e-31 131
MS.gene27047.t1 AT1G19220 68.365 373 110 5 35 403 15 383 9.32e-166 511
MS.gene27047.t1 AT1G19220 44.578 166 84 4 687 849 890 1050 4.11e-32 135
MS.gene27047.t1 AT5G37020 66.846 371 118 4 31 398 11 379 2.62e-165 500
MS.gene27047.t1 AT5G37020 53.623 69 32 0 757 825 705 773 7.51e-18 89.0
MS.gene27047.t1 AT5G37020 66.846 371 118 4 31 398 11 379 1.61e-164 499
MS.gene27047.t1 AT5G37020 51.613 93 45 0 757 849 705 797 2.02e-24 110
MS.gene27047.t1 AT5G20730 70.262 343 99 3 35 376 16 356 2.39e-158 493
MS.gene27047.t1 AT5G20730 59.406 101 41 0 749 849 1029 1129 1.76e-31 133
MS.gene27047.t1 AT5G20730 70.058 344 99 4 35 376 16 357 1.15e-156 489
MS.gene27047.t1 AT5G20730 59.406 101 41 0 749 849 1030 1130 1.74e-31 133
MS.gene27047.t1 AT5G20730 70.058 344 99 4 35 376 16 357 1.71e-156 489
MS.gene27047.t1 AT5G20730 59.406 101 41 0 749 849 1030 1130 1.92e-31 133
MS.gene27047.t1 AT5G62000 56.140 342 141 4 39 376 57 393 3.90e-123 392
MS.gene27047.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene27047.t1 AT5G62000 56.140 342 141 4 39 376 57 393 3.90e-123 392
MS.gene27047.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene27047.t1 AT5G62000 56.140 342 141 4 39 376 57 393 3.90e-123 392
MS.gene27047.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene27047.t1 AT5G62000 56.140 342 141 4 39 376 57 393 3.90e-123 392
MS.gene27047.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene27047.t1 AT5G62000 56.140 342 141 4 39 376 57 393 4.67e-123 392
MS.gene27047.t1 AT5G62000 35.838 173 88 6 706 861 683 849 1.03e-18 92.0
MS.gene27047.t1 AT5G37020 65.614 285 94 3 117 398 1 284 7.12e-118 374
MS.gene27047.t1 AT5G37020 51.613 93 45 0 757 849 610 702 1.28e-24 110
MS.gene27047.t1 AT1G59750 53.216 342 150 4 39 376 18 353 2.46e-115 366
MS.gene27047.t1 AT1G59750 48.039 102 49 3 756 855 536 635 5.68e-19 92.4
MS.gene27047.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.67e-115 366
MS.gene27047.t1 AT1G59750 48.039 102 49 3 756 855 541 640 5.79e-19 92.4
MS.gene27047.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.67e-115 366
MS.gene27047.t1 AT1G59750 48.039 102 49 3 756 855 541 640 5.79e-19 92.4
MS.gene27047.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.68e-115 366
MS.gene27047.t1 AT1G59750 48.039 102 49 3 756 855 538 637 6.06e-19 92.4
MS.gene27047.t1 AT2G46530 51.429 350 162 6 40 386 18 362 2.30e-111 354
MS.gene27047.t1 AT2G46530 40.000 95 54 2 757 850 490 582 1.80e-14 77.8
MS.gene27047.t1 AT2G46530 52.367 338 155 5 40 376 39 371 3.73e-111 354
MS.gene27047.t1 AT2G46530 40.000 95 54 2 757 850 511 603 2.10e-14 77.8
MS.gene27047.t1 AT3G61830 52.212 339 154 6 40 376 22 354 1.01e-109 350
MS.gene27047.t1 AT3G61830 46.739 92 44 3 757 846 489 577 7.44e-15 79.3
MS.gene27047.t1 AT5G60450 50.838 358 161 7 35 381 33 386 3.40e-108 350
MS.gene27047.t1 AT5G60450 38.835 103 61 2 757 858 641 742 1.69e-16 84.7
MS.gene27047.t1 AT5G60450 51.275 353 157 7 40 381 62 410 1.86e-107 349
MS.gene27047.t1 AT5G60450 38.835 103 61 2 757 858 665 766 1.74e-16 84.7
MS.gene27047.t1 AT4G23980 52.326 344 147 6 40 376 9 342 2.28e-107 344
MS.gene27047.t1 AT4G23980 46.154 91 46 2 757 846 523 611 2.12e-15 80.9
MS.gene27047.t1 AT4G23980 52.326 344 147 6 40 376 9 342 2.30e-107 344
MS.gene27047.t1 AT4G23980 46.154 91 46 2 757 846 521 609 2.09e-15 80.9
MS.gene27047.t1 AT2G33860 49.284 349 158 4 43 381 54 393 3.14e-103 333
MS.gene27047.t1 AT3G61830 51.623 308 141 6 71 376 2 303 2.29e-94 307
MS.gene27047.t1 AT3G61830 46.739 92 44 3 757 846 438 526 5.76e-15 79.3
MS.gene27047.t1 AT1G34410 44.737 342 181 5 35 376 19 352 4.87e-93 305
MS.gene27047.t1 AT1G34410 40.909 88 49 2 757 843 511 596 4.04e-12 70.5
MS.gene27047.t1 AT1G35540 43.860 342 184 6 35 376 19 352 7.52e-91 300
MS.gene27047.t1 AT1G35540 40.000 90 51 2 757 845 510 597 1.89e-12 71.6
MS.gene27047.t1 AT1G35240 43.567 342 185 5 35 376 19 352 1.07e-89 296
MS.gene27047.t1 AT1G35240 42.045 88 48 2 757 843 497 582 2.90e-12 70.9
MS.gene27047.t1 AT1G35520 44.611 334 177 6 43 376 27 352 5.26e-88 291
MS.gene27047.t1 AT1G35520 40.741 81 45 2 757 836 511 589 2.42e-11 67.8
MS.gene27047.t1 AT1G34310 43.567 342 185 6 35 376 19 352 4.47e-87 289
MS.gene27047.t1 AT1G34310 39.506 81 46 2 757 836 511 589 6.14e-11 66.6
MS.gene27047.t1 AT1G34390 44.737 342 179 7 35 376 19 350 2.43e-85 285
MS.gene27047.t1 AT1G34170 41.071 336 188 6 43 376 25 352 8.68e-81 270
MS.gene27047.t1 AT2G46530 50.545 275 128 6 116 386 5 275 2.00e-78 263
MS.gene27047.t1 AT2G46530 40.000 95 54 2 757 850 403 495 1.03e-14 78.6
MS.gene27047.t1 AT2G33860 54.661 236 106 1 146 381 2 236 5.76e-78 260
MS.gene27047.t1 AT2G28350 38.760 387 179 8 38 376 5 381 1.47e-77 265
MS.gene27047.t1 AT2G28350 38.760 387 179 8 38 376 5 381 3.11e-77 265
MS.gene27047.t1 AT4G30080 39.043 397 188 11 35 389 11 395 6.97e-77 264
MS.gene27047.t1 AT1G34170 38.988 336 169 5 43 376 25 326 4.32e-74 251
MS.gene27047.t1 AT1G34170 38.988 336 169 5 43 376 25 326 2.63e-73 251
MS.gene27047.t1 AT1G77850 36.170 376 191 9 38 376 14 377 3.98e-60 215
MS.gene27047.t1 AT1G77850 36.074 377 192 9 37 376 13 377 4.23e-60 215
MS.gene27047.t1 AT1G43950 44.076 211 111 5 35 245 19 222 1.08e-47 169

Find 171 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATGAATGCATGTTAA+AGG 0.173174 1.1:-941904 None:intergenic
CTTCTTATTCTGCAGATATA+TGG 0.173372 1.1:+941166 MS.gene27047:intron
GCCGTTGCAATCCGGATATT+TGG 0.177793 1.1:+941522 MS.gene27047:CDS
AAATACAGAAAATCTGTTTA+TGG 0.194457 1.1:+940997 MS.gene27047:CDS
GGAAAGATGAAAAGGCTTTC+TGG 0.205659 1.1:-941475 None:intergenic
CATAATTATCCCACACTTCT+TGG 0.212825 1.1:-942310 None:intergenic
AGACATTAAATTCAGAATTA+TGG 0.240617 1.1:+938997 MS.gene27047:CDS
TTAGAACCAGGCCACCTTAA+AGG 0.260988 1.1:-941218 None:intergenic
AGCAAAATCGGGTTAGTGTT+TGG 0.286566 1.1:+941440 MS.gene27047:CDS
CTTTCAGCTGGCATGAGATT+TGG 0.299456 1.1:+941027 MS.gene27047:CDS
TTTAGTCCAAACTCAGATAC+TGG 0.303459 1.1:-939652 None:intergenic
GTGCTTGAAAGGTGAACTTT+TGG 0.314555 1.1:-941861 None:intergenic
TTGTTGCATGATAGGTAAAA+AGG 0.323540 1.1:-941778 None:intergenic
CGCGCAATTGAATGCATGTT+TGG 0.329869 1.1:+942886 MS.gene27047:CDS
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1.1:+941235 MS.gene27047:CDS
TTCTTATTCTGCAGATATAT+GGG 0.354261 1.1:+941167 MS.gene27047:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1.1:-942453 None:intergenic
CCGTTGCAATCCGGATATTT+GGG 0.360826 1.1:+941523 MS.gene27047:CDS
TGCATGTTAAAGGTGTTATT+AGG 0.363217 1.1:-941894 None:intergenic
GCAAAATCGGGTTAGTGTTT+GGG 0.363557 1.1:+941441 MS.gene27047:CDS
TGCTAGTTGGAGATGATCCT+TGG 0.365242 1.1:+942983 MS.gene27047:CDS
GATGGAAGACTAGGGTAGTT+TGG 0.373410 1.1:-939319 None:intergenic
GCATAATCTTGTTGCATGAT+AGG 0.375254 1.1:-941786 None:intergenic
AATACAGAAAATCTGTTTAT+GGG 0.375476 1.1:+940998 MS.gene27047:CDS
GTTTGTTTGTCGGCTCAAAA+AGG 0.375508 1.1:+940377 MS.gene27047:CDS
GCTGTTTACAATAGAAGAAT+CGG 0.384358 1.1:-942201 None:intergenic
TTTGATTATAATATGTTAGT+TGG 0.389191 1.1:-942067 None:intergenic
GTGTTTCCAGTATCTGAGTT+TGG 0.389251 1.1:+939646 MS.gene27047:CDS
TTGTAAATAAACAGGCTGAA+TGG 0.397672 1.1:+941395 MS.gene27047:intron
CACACTTCTTGGTTCATTGA+AGG 0.399760 1.1:-942299 None:intergenic
GTTAAAGAGATGAGTGAAGA+AGG 0.411917 1.1:+943201 MS.gene27047:CDS
GGGAAGTCAAACATATGATT+AGG 0.412107 1.1:-941999 None:intergenic
CATGGCTTCCTTAGAAGAAA+AGG 0.416918 1.1:+938756 None:intergenic
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1.1:+941396 MS.gene27047:intron
TTCTGCAGAATAATAACTCT+TGG 0.422237 1.1:+942651 MS.gene27047:CDS
TCAGTGATGTCGATCCTTTA+AGG 0.425306 1.1:+941204 MS.gene27047:CDS
CTGAATGACACAAAAGGTTC+CGG 0.425971 1.1:+942922 MS.gene27047:CDS
ATGTTACCTTTGTGTAGGTT+CGG 0.426676 1.1:-942694 None:intergenic
CACCCTCAAGATTGCATGGT+TGG 0.430745 1.1:+942497 MS.gene27047:CDS
TTGTTGCAGCTTTCAAAAGA+TGG 0.431109 1.1:-942020 None:intergenic
GATGTTTGAGACCGAGGAAT+CGG 0.432905 1.1:+941053 MS.gene27047:CDS
GAACAACTAGTTCTTGAGTT+GGG 0.432917 1.1:-939892 None:intergenic
GGTGTGGTGATAAGCAAAAT+CGG 0.435666 1.1:+941428 MS.gene27047:CDS
GTCGATCCTTTAAGGTGGCC+TGG 0.437670 1.1:+941212 MS.gene27047:CDS
ATTGTTGAAAAGTGAGCAAC+CGG 0.440957 1.1:+941920 MS.gene27047:CDS
CTTGTGTCATTGCCTCAAGT+GGG 0.444777 1.1:+939038 MS.gene27047:CDS
TATTTGCAGGGCATGTCCTT+CGG 0.447302 1.1:+940954 MS.gene27047:intron
CTAAAACGGCCGTTGCAATC+CGG 0.447348 1.1:+941514 MS.gene27047:CDS
CTTTGACTTCAAGCCTAAAA+CGG 0.447527 1.1:+941500 MS.gene27047:CDS
CTCATCTCTTTAACTTCTGA+AGG 0.449266 1.1:-943192 None:intergenic
GATCTTGTGTAGGGAATTTG+TGG 0.451328 1.1:+943140 MS.gene27047:intron
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1.1:+940718 MS.gene27047:CDS
GGAAAAGCTGTTTCCTCCAT+TGG 0.458270 1.1:+939768 MS.gene27047:CDS
AGATATATGGGTACAATTGT+AGG 0.463723 1.1:+941179 MS.gene27047:intron
TATGGGACTCACCTTTCAGC+TGG 0.465604 1.1:+941015 MS.gene27047:CDS
AAAAGTGTTGGAGGAGTTGT+TGG 0.469435 1.1:+938781 MS.gene27047:CDS
GAATTATGGCATGCTTGTGC+TGG 0.470225 1.1:+939011 MS.gene27047:CDS
GCTAGTTGGAGATGATCCTT+GGG 0.470617 1.1:+942984 MS.gene27047:CDS
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1.1:-941483 None:intergenic
TTTAGGCTTGAAGTCAAAGA+AGG 0.471500 1.1:-941496 None:intergenic
ATTAAAGTACCCGAAAATGA+AGG 0.474465 1.1:+941663 MS.gene27047:CDS
CATTGACACAAATTTCACTT+TGG 0.474844 1.1:-942376 None:intergenic
CCTGTTCACTATGTCCTTGA+GGG 0.475837 1.1:-939079 None:intergenic
AAGAAACGTACCCAAATATC+CGG 0.476983 1.1:-941533 None:intergenic
GAGAGTGATGTTCTGCTAGT+TGG 0.482377 1.1:+942970 MS.gene27047:CDS
TAATAGTGTCAGTACCACTA+TGG 0.485813 1.1:+942409 MS.gene27047:CDS
TCTTGTGTCATTGCCTCAAG+TGG 0.485817 1.1:+939037 MS.gene27047:CDS
CCCTCAAGGACATAGTGAAC+AGG 0.486634 1.1:+939079 MS.gene27047:CDS
AAGAGACACCTTCTCACAAC+GGG 0.488034 1.1:+940349 MS.gene27047:CDS
ACGGGTTGGAGTTTGTTTGT+CGG 0.492443 1.1:+940367 MS.gene27047:CDS
TCTAACTGAGGCTGCTGCAT+TGG 0.492863 1.1:-942137 None:intergenic
AGCTTACAGAATTCAGTGGT+TGG 0.493036 1.1:-939514 None:intergenic
GAAGAAAAGGCTAAAAGTGT+TGG 0.493255 1.1:+938769 MS.gene27047:CDS
ACCTTTGTGTAGGTTCGGAT+TGG 0.493613 1.1:-942689 None:intergenic
AAAATGGTGTTTGAAGTAGA+AGG 0.495433 1.1:-942437 None:intergenic
GAAAAGGCTAAAAGTGTTGG+AGG 0.498865 1.1:+938772 MS.gene27047:CDS
ATGTTTGAGACCGAGGAATC+GGG 0.501076 1.1:+941054 MS.gene27047:CDS
AGAGTTGTCTCGCAGAGAAA+AGG 0.502279 1.1:-942585 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1.1:+941406 MS.gene27047:intron
ATCTTGTGTAGGGAATTTGT+GGG 0.505590 1.1:+943141 MS.gene27047:intron
AACAACTAGTTCTTGAGTTG+GGG 0.512403 1.1:-939891 None:intergenic
CTGTTTACAATAGAAGAATC+GGG 0.516285 1.1:-942200 None:intergenic
TACGTATACTAGTTTCCATC+CGG 0.523910 1.1:-942941 None:intergenic
TGTGTCATTGCCTCAAGTGG+GGG 0.524294 1.1:+939040 MS.gene27047:CDS
TTAAAGAGATGAGTGAAGAA+GGG 0.524881 1.1:+943202 MS.gene27047:CDS
TGCCAACCATGCAATCTTGA+GGG 0.526265 1.1:-942499 None:intergenic
CCGAGGAATCGGGTAAGCGC+AGG 0.529760 1.1:+941064 MS.gene27047:CDS
GAGATTTGCATGATAATACA+TGG 0.533645 1.1:+939915 MS.gene27047:CDS
CGCAGATAGACGTAGACGAA+TGG 0.538497 1.1:+942231 MS.gene27047:CDS
AACTTAAGTTCTAGTCAAGA+TGG 0.540183 1.1:+942521 MS.gene27047:CDS
CCATTGTTGTTGATCACCTG+TGG 0.540797 1.1:-941753 None:intergenic
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1.1:+941412 MS.gene27047:CDS
TTCGGTTCCACGCAGAGCTG+CGG 0.543545 1.1:+939747 MS.gene27047:CDS
CCTGCGCTTACCCGATTCCT+CGG 0.545092 1.1:-941064 None:intergenic
TTGTGTCATTGCCTCAAGTG+GGG 0.545165 1.1:+939039 MS.gene27047:CDS
GTGTGGTGATAAGCAAAATC+GGG 0.545815 1.1:+941429 MS.gene27047:CDS
CGAACAACTAGTTCTTGAGT+TGG 0.551901 1.1:-939893 None:intergenic
TGTTGCAGCTTTCAAAAGAT+GGG 0.552162 1.1:-942019 None:intergenic
TCAGCACCCTCAAGATTGCA+TGG 0.555417 1.1:+942493 MS.gene27047:CDS
GTATGCTCTCTGTGCTTGAA+AGG 0.557270 1.1:-941872 None:intergenic
TGGTATGATGTTTGAGACCG+AGG 0.557923 1.1:+941047 MS.gene27047:CDS
TGGAGCATGTCAATCATTTG+AGG 0.562075 1.1:-942176 None:intergenic
ACCTGTTCACTATGTCCTTG+AGG 0.562382 1.1:-939080 None:intergenic
TTCAATGAACCAAGAAGTGT+GGG 0.563061 1.1:+942301 MS.gene27047:CDS
TAGCAGAAGTAATCTGAGAC+TGG 0.563668 1.1:-942544 None:intergenic
TCAGCAGAAAGTACTGATGA+TGG 0.564399 1.1:-940768 None:intergenic
AACAACTGAGATGGAAGACT+AGG 0.565825 1.1:-939328 None:intergenic
CAAATCTCATGCCAGCTGAA+AGG 0.565921 1.1:-941026 None:intergenic
TGTGGACTTCATATCTTGCA+AGG 0.568033 1.1:-941823 None:intergenic
CTGAACAGCGGAGCATTGCA+AGG 0.572206 1.1:+943234 MS.gene27047:CDS
TGGTTCATTGAAGGTATCGA+GGG 0.572733 1.1:-942290 None:intergenic
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1.1:-940357 None:intergenic
AAATAATGTTACCTTTGTGT+AGG 0.573136 1.1:-942699 None:intergenic
GTTGTGAGAAGGTGTCTCTT+CGG 0.575157 1.1:-940346 None:intergenic
CTTGTCTATTACTTCCCTCA+AGG 0.578102 1.1:+939065 MS.gene27047:CDS
GGATTGTAGAAAATCGTGAA+TGG 0.579311 1.1:-940846 None:intergenic
CTATGATGCAGAAAATGAGT+GGG 0.579800 1.1:+941617 MS.gene27047:intron
AATTGAATGCATGTTTGGAC+TGG 0.580066 1.1:+942891 MS.gene27047:CDS
TTGCCAACCATGCAATCTTG+AGG 0.582580 1.1:-942500 None:intergenic
TAATACAAAATTAGAATCTG+AGG 0.583985 1.1:+941971 MS.gene27047:CDS
CTTCAATGAACCAAGAAGTG+TGG 0.584734 1.1:+942300 MS.gene27047:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.586460 1.1:+941222 MS.gene27047:CDS
ATATTTCGCCACTTAGAACC+AGG 0.586883 1.1:-941230 None:intergenic
GAACTAGTATGAGCGAGTAA+TGG 0.586998 1.1:-942110 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1.1:+940353 MS.gene27047:CDS
CTATATAGCCTTACCAATGG+AGG 0.589175 1.1:-939781 None:intergenic
ACTTGACACAACAACTGAGA+TGG 0.591159 1.1:-939337 None:intergenic
GTGTCATTGCCTCAAGTGGG+GGG 0.591608 1.1:+939041 MS.gene27047:CDS
ATCGAGGGATTCACTACTTG+AGG 0.592078 1.1:-942275 None:intergenic
TCGATTAGCAGCTGCATGAG+CGG 0.593060 1.1:-940820 None:intergenic
CCCAAATATCCGGATTGCAA+CGG 0.593442 1.1:-941523 None:intergenic
TGGATTCTCTATAACCTGTG+TGG 0.593849 1.1:-941841 None:intergenic
TTACAATAGAAGAATCGGGT+TGG 0.596283 1.1:-942196 None:intergenic
TTGGTTCATTGAAGGTATCG+AGG 0.596449 1.1:-942291 None:intergenic
AGTGTTGGAGGAGTTGTTGG+TGG 0.597797 1.1:+938784 MS.gene27047:CDS
ATATAGCTTACAGAATTCAG+TGG 0.600450 1.1:-939518 None:intergenic
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1.1:+941407 MS.gene27047:intron
GAGAAGTCGCAATTGCGAGT+TGG 0.609632 1.1:+940711 MS.gene27047:CDS
GGGTGAGAAACTTACTCCCA+AGG 0.617581 1.1:-943000 None:intergenic
ACAACTAGTTCTTGAGTTGG+GGG 0.617960 1.1:-939890 None:intergenic
ATGACACAAAAGGTTCCGGA+TGG 0.629064 1.1:+942926 MS.gene27047:CDS
GGTCTGCTGAATGACACAAA+AGG 0.630277 1.1:+942916 MS.gene27047:CDS
TACTTTCATCAAAATCAACA+TGG 0.633033 1.1:-942625 None:intergenic
AAAGAAATGCAAGAACATTG+TGG 0.633626 1.1:+938838 MS.gene27047:CDS
ACAACTGAGATGGAAGACTA+GGG 0.639765 1.1:-939327 None:intergenic
ACTTGAGGCAATGACACAAG+AGG 0.641095 1.1:-939035 None:intergenic
GTGGACTTCATATCTTGCAA+GGG 0.645449 1.1:-941822 None:intergenic
CCACAGGTGATCAACAACAA+TGG 0.657687 1.1:+941753 MS.gene27047:CDS
GACATTGATGATTCTAACTG+AGG 0.657820 1.1:-942149 None:intergenic
CATTCGTCTACGTCTATCTG+CGG 0.660180 1.1:-942230 None:intergenic
GCTAGTGATACTAGCACACA+TGG 0.660819 1.1:+939718 MS.gene27047:CDS
TCTCTGCGAGACAACTCTGG+TGG 0.660933 1.1:+942590 MS.gene27047:CDS
AGTAGAAGGATCAACCATAG+TGG 0.662515 1.1:-942423 None:intergenic
ACCCGAAAATGAAGGAACAG+TGG 0.665241 1.1:+941671 MS.gene27047:CDS
CTTGAGGCAATGACACAAGA+GGG 0.667127 1.1:-939034 None:intergenic
CAAACATGCATTCAATTGCG+CGG 0.668814 1.1:-942885 None:intergenic
GAATGCATGTTTGGACTGGA+CGG 0.670392 1.1:+942895 MS.gene27047:CDS
GGGATGAAGCTTCTGAACAG+CGG 0.672458 1.1:+943222 MS.gene27047:CDS
TCTTGTGTAGGGAATTTGTG+GGG 0.680812 1.1:+943142 MS.gene27047:intron
TCTATGATGCAGAAAATGAG+TGG 0.683454 1.1:+941616 MS.gene27047:intron
GCAAGATATGAAGTCCACAC+AGG 0.685567 1.1:+941827 MS.gene27047:CDS
AGTGGAATAACAAAATCCGA+AGG 0.692028 1.1:-940970 None:intergenic
GTGATGTCGATCCTTTAAGG+TGG 0.692501 1.1:+941207 MS.gene27047:CDS
AGGGTAGTTTGGAATCTGTG+AGG 0.694049 1.1:-939308 None:intergenic
TCTGCTGATAGCATGCACAT+TGG 0.695779 1.1:+940783 MS.gene27047:CDS
TATGATGCAGAAAATGAGTG+GGG 0.696824 1.1:+941618 MS.gene27047:intron
GTGATAATATTCGTATACAG+CGG 0.703562 1.1:-943170 None:intergenic
GAAGAGACACCTTCTCACAA+CGG 0.710470 1.1:+940348 MS.gene27047:CDS
ACCAATCCGAACCTACACAA+AGG 0.719172 1.1:+942688 MS.gene27047:CDS
ACATTTCGACATATCTACCG+AGG 0.754798 1.1:+939938 MS.gene27047:CDS
AGTGATACTAGCACACATGG+TGG 0.770082 1.1:+939721 MS.gene27047:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTTTAATATCTAAAA+AGG - chr1.1:943107-943126 None:intergenic 10.0%
!!! AAAGTTTTAATATCTAAAAA+GGG - chr1.1:943106-943125 None:intergenic 10.0%
!!! TTTTTAGATATTAAAACTTT+TGG + chr1.1:943106-943125 MS.gene27047:intron 10.0%
!!! TTTTTTCTTAATTTTTACAA+TGG + chr1.1:938881-938900 MS.gene27047:intron 10.0%
!! AAAAATTAAGAAAAAAGAGA+AGG - chr1.1:938877-938896 None:intergenic 15.0%
!! AAATTTCTTTGTAAATAAAC+AGG + chr1.1:941387-941406 MS.gene27047:intron 15.0%
!! ATCAAAACATACAATTTAAA+GGG - chr1.1:939448-939467 None:intergenic 15.0%
!! ATCTAAAAATATTATATGTC+AGG - chr1.1:940901-940920 None:intergenic 15.0%
!! TATCAAAACATACAATTTAA+AGG - chr1.1:939449-939468 None:intergenic 15.0%
!! TTTGATTATAATATGTTAGT+TGG - chr1.1:942070-942089 None:intergenic 15.0%
!!! AAATTGTATGTTTTGATAAT+AGG + chr1.1:939451-939470 MS.gene27047:intron 15.0%
!!! AGATTCTAATTTTGTATTAT+TGG - chr1.1:941970-941989 None:intergenic 15.0%
!!! ATTTTGATTTGATTGATATT+TGG + chr1.1:938945-938964 MS.gene27047:intron 15.0%
!!! CAATTTTTTCAGATTATTAT+CGG + chr1.1:940071-940090 MS.gene27047:intron 15.0%
!!! TAAGTTTAATAGTCTTATTT+TGG + chr1.1:943054-943073 MS.gene27047:intron 15.0%
!!! TAATTTTGTATTATTGGTTT+TGG - chr1.1:941964-941983 None:intergenic 15.0%
!!! TATTATTTTTCATTTGTGTT+AGG + chr1.1:939615-939634 MS.gene27047:intron 15.0%
!! AAATACAGAAAATCTGTTTA+TGG + chr1.1:940997-941016 MS.gene27047:CDS 20.0%
!! AAATTTAGGGAAAAAATGTA+AGG - chr1.1:940312-940331 None:intergenic 20.0%
!! AATACAGAAAATCTGTTTAT+GGG + chr1.1:940998-941017 MS.gene27047:CDS 20.0%
!! AATGGTATATCTTAATAACT+GGG - chr1.1:941280-941299 None:intergenic 20.0%
!! AGACATTAAATTCAGAATTA+TGG + chr1.1:938997-939016 MS.gene27047:CDS 20.0%
!! ATTGTACATCTAAATGTTAT+TGG + chr1.1:939574-939593 MS.gene27047:intron 20.0%
!! ATTTATGTAGAGATGATTAT+TGG - chr1.1:940654-940673 None:intergenic 20.0%
!! CTTAATCTTAGTAATATAGT+CGG + chr1.1:941357-941376 MS.gene27047:intron 20.0%
!! TAATACAAAATTAGAATCTG+AGG + chr1.1:941971-941990 MS.gene27047:CDS 20.0%
!! TCAAAACATACAATTTAAAG+GGG - chr1.1:939447-939466 None:intergenic 20.0%
!! TTTCAATATTAGGAAAATTG+TGG + chr1.1:940593-940612 MS.gene27047:intron 20.0%
!!! AATATTTTTAGATCTAATCG+TGG + chr1.1:940908-940927 MS.gene27047:intron 20.0%
!!! ATAAACAGATTTTCTGTATT+TGG - chr1.1:940998-941017 None:intergenic 20.0%
!!! ATGTAATGGTTTTCAATATT+AGG + chr1.1:940583-940602 MS.gene27047:intron 20.0%
!!! ATTGTAGTTTTAAGTTTCTT+TGG + chr1.1:939178-939197 MS.gene27047:intron 20.0%
!!! GTTGTACTAATTTTTGTTTA+GGG + chr1.1:938967-938986 MS.gene27047:intron 20.0%
!!! TAACATTATTTCTGTAATGT+TGG + chr1.1:942711-942730 MS.gene27047:intron 20.0%
!!! TTGTACTAATTTTTGTTTAG+GGG + chr1.1:938968-938987 MS.gene27047:intron 20.0%
!!! TTTACAATGGTTATGTTTTA+TGG + chr1.1:938894-938913 MS.gene27047:intron 20.0%
! AAAACACACTAATCAAATGA+GGG - chr1.1:939847-939866 None:intergenic 25.0%
! AAAATAACAAGTTGCTAATC+AGG - chr1.1:940622-940641 None:intergenic 25.0%
! AAAATATTATATGTCAGGTG+AGG - chr1.1:940896-940915 None:intergenic 25.0%
! AAACATATTTAGGTATACCT+TGG - chr1.1:940870-940889 None:intergenic 25.0%
! AAATAATGTTACCTTTGTGT+AGG - chr1.1:942702-942721 None:intergenic 25.0%
! ACTGCAACTTTATTATTGTT+TGG + chr1.1:940219-940238 MS.gene27047:intron 25.0%
! ATAGTTACATTGCAATGTAA+TGG + chr1.1:940569-940588 MS.gene27047:intron 25.0%
! ATGGTATATCTTAATAACTG+GGG - chr1.1:941279-941298 None:intergenic 25.0%
! ATTACATTGCAATGTAACTA+TGG - chr1.1:940570-940589 None:intergenic 25.0%
! CGACTATATTACTAAGATTA+AGG - chr1.1:941359-941378 None:intergenic 25.0%
! CTATAAAACATACTCTATGT+TGG + chr1.1:941332-941351 MS.gene27047:intron 25.0%
! CTGCAACTTTATTATTGTTT+GGG + chr1.1:940220-940239 MS.gene27047:intron 25.0%
! GAATGGTATATCTTAATAAC+TGG - chr1.1:941281-941300 None:intergenic 25.0%
! TACTTTCATCAAAATCAACA+TGG - chr1.1:942628-942647 None:intergenic 25.0%
! TCAACTATTATAGTTAGTTC+AGG - chr1.1:941137-941156 None:intergenic 25.0%
! TGACCTACATGAAAAATTTA+GGG - chr1.1:940325-940344 None:intergenic 25.0%
! TGATGTGTTAATTGTTACAA+GGG + chr1.1:940686-940705 MS.gene27047:intron 25.0%
! TTCTTATTCTGCAGATATAT+GGG + chr1.1:941167-941186 MS.gene27047:intron 25.0%
!! ACCTTCAAAATAATTAGTCT+TGG + chr1.1:940265-940284 MS.gene27047:intron 25.0%
!! TTTCCCTAAATTTTTCATGT+AGG + chr1.1:940319-940338 MS.gene27047:intron 25.0%
!!! AAGTACAAGACATTTTGATA+AGG - chr1.1:941574-941593 None:intergenic 25.0%
!!! AGATTCTAGTTTCTATTGAA+TGG + chr1.1:939213-939232 MS.gene27047:intron 25.0%
!!! ATGTCAAGAATTTTAACTTG+AGG + chr1.1:942330-942349 MS.gene27047:CDS 25.0%
!!! ATTGGTTTGGTAAAATAAAC+AGG + chr1.1:940154-940173 MS.gene27047:intron 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG - chr1.1:941661-941680 None:intergenic 25.0%
!!! GGTTGTACTAATTTTTGTTT+AGG + chr1.1:938966-938985 MS.gene27047:intron 25.0%
!!! TCCAAGACTAATTATTTTGA+AGG - chr1.1:940269-940288 None:intergenic 25.0%
!!! TGTCAAGAATTTTAACTTGA+GGG + chr1.1:942331-942350 MS.gene27047:CDS 25.0%
!!! TGTTTATTTTACCAAACCAA+TGG - chr1.1:940155-940174 None:intergenic 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG - chr1.1:941660-941679 None:intergenic 25.0%
AAAACAGTTCAGAAGAATTC+AGG - chr1.1:941096-941115 None:intergenic 30.0%
AAAGAAATGCAAGAACATTG+TGG + chr1.1:938838-938857 MS.gene27047:CDS 30.0%
AGATATATGGGTACAATTGT+AGG + chr1.1:941179-941198 MS.gene27047:intron 30.0%
ATAGTTCAATCTATGTCCAT+TGG + chr1.1:940136-940155 MS.gene27047:intron 30.0%
ATATAGCTTACAGAATTCAG+TGG - chr1.1:939521-939540 None:intergenic 30.0%
ATCAAACATTACACGAAAGA+AGG - chr1.1:943024-943043 None:intergenic 30.0%
ATGTAGAGATGATTATTGGT+TGG - chr1.1:940650-940669 None:intergenic 30.0%
CAAAACACACTAATCAAATG+AGG - chr1.1:939848-939867 None:intergenic 30.0%
CAACAATGAATGCATGTTAA+AGG - chr1.1:941907-941926 None:intergenic 30.0%
CAACATCGAAAAAGTGAATA+CGG + chr1.1:942040-942059 MS.gene27047:CDS 30.0%
CATTGACACAAATTTCACTT+TGG - chr1.1:942379-942398 None:intergenic 30.0%
CTCTGTTACTATCTGAATAT+AGG + chr1.1:940483-940502 MS.gene27047:intron 30.0%
CTGACCTACATGAAAAATTT+AGG - chr1.1:940326-940345 None:intergenic 30.0%
CTGTTTACAATAGAAGAATC+GGG - chr1.1:942203-942222 None:intergenic 30.0%
CTTCTTATTCTGCAGATATA+TGG + chr1.1:941166-941185 MS.gene27047:intron 30.0%
GAGATTTGCATGATAATACA+TGG + chr1.1:939915-939934 MS.gene27047:CDS 30.0%
GCTGTTTACAATAGAAGAAT+CGG - chr1.1:942204-942223 None:intergenic 30.0%
GGTGAGGTATAAACATATTT+AGG - chr1.1:940880-940899 None:intergenic 30.0%
GTGATAATATTCGTATACAG+CGG - chr1.1:943173-943192 None:intergenic 30.0%
GTGATGTGTTAATTGTTACA+AGG + chr1.1:940685-940704 MS.gene27047:intron 30.0%
TCAAACATTACACGAAAGAA+GGG - chr1.1:943023-943042 None:intergenic 30.0%
TCAAAGAAGGAAAGATGAAA+AGG - chr1.1:941486-941505 None:intergenic 30.0%
TCTTGAGTGTATTATTTGCA+GGG + chr1.1:940942-940961 MS.gene27047:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG + chr1.1:941396-941415 MS.gene27047:intron 30.0%
TTAAAGAGATGAGTGAAGAA+GGG + chr1.1:943202-943221 MS.gene27047:CDS 30.0%
TTCGATCTTGTATATCATGA+TGG + chr1.1:942764-942783 MS.gene27047:intron 30.0%
TTCTGCAGAATAATAACTCT+TGG + chr1.1:942651-942670 MS.gene27047:CDS 30.0%
TTCTTGAGTGTATTATTTGC+AGG + chr1.1:940941-940960 MS.gene27047:intron 30.0%
TTGTAAATAAACAGGCTGAA+TGG + chr1.1:941395-941414 MS.gene27047:intron 30.0%
TTGTTGCATGATAGGTAAAA+AGG - chr1.1:941781-941800 None:intergenic 30.0%
TTTCAGATTATTATCGGTGT+CGG + chr1.1:940077-940096 MS.gene27047:intron 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG - chr1.1:942440-942459 None:intergenic 30.0%
! AACTTAAGTTCTAGTCAAGA+TGG + chr1.1:942521-942540 MS.gene27047:CDS 30.0%
! ACACCATTAATCTAAAGTGT+AGG - chr1.1:939999-940018 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG - chr1.1:941725-941744 None:intergenic 30.0%
! ATGTTTTCTTGGTAGAGATT+TGG - chr1.1:941714-941733 None:intergenic 30.0%
! ATTAAAGTACCCGAAAATGA+AGG + chr1.1:941663-941682 MS.gene27047:CDS 30.0%
! CTCATTTGATTAGTGTGTTT+TGG + chr1.1:939846-939865 MS.gene27047:intron 30.0%
! GAAGATGTTTTATAAACCAC+AGG + chr1.1:941737-941756 MS.gene27047:CDS 30.0%
! GTTTGTGTTTTGTCCTTTTA+AGG + chr1.1:939258-939277 MS.gene27047:intron 30.0%
! GTTTTTCTGCAAAACTTTGA+CGG + chr1.1:939696-939715 MS.gene27047:CDS 30.0%
!! ACAAGACATTTTGATAAGGT+GGG - chr1.1:941570-941589 None:intergenic 30.0%
!! ACTTTTAGCCTTTTCTTCTA+AGG - chr1.1:938767-938786 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG - chr1.1:941571-941590 None:intergenic 30.0%
!! TGCATGTTAAAGGTGTTATT+AGG - chr1.1:941897-941916 None:intergenic 30.0%
!!! ATGGATTTTGAGTTTGGTTT+TGG - chr1.1:942094-942113 None:intergenic 30.0%
!!! GATTAGTGTGTTTTGGTTTT+AGG + chr1.1:939853-939872 MS.gene27047:intron 30.0%
AAGAAACGTACCCAAATATC+CGG - chr1.1:941536-941555 None:intergenic 35.0%
AATTGAATGCATGTTTGGAC+TGG + chr1.1:942891-942910 MS.gene27047:CDS 35.0%
ACAATGTTGTGATCTTGTGT+AGG + chr1.1:943130-943149 MS.gene27047:intron 35.0%
ACAGAGTTTCGTATCATGTT+TGG - chr1.1:940469-940488 None:intergenic 35.0%
AGTGGAATAACAAAATCCGA+AGG - chr1.1:940973-940992 None:intergenic 35.0%
ATCTTGTGTAGGGAATTTGT+GGG + chr1.1:943141-943160 MS.gene27047:intron 35.0%
ATGTTACCTTTGTGTAGGTT+CGG - chr1.1:942697-942716 None:intergenic 35.0%
ATTGTTGAAAAGTGAGCAAC+CGG + chr1.1:941920-941939 MS.gene27047:CDS 35.0%
CAATGTTGTGATCTTGTGTA+GGG + chr1.1:943131-943150 MS.gene27047:intron 35.0%
CATAATTATCCCACACTTCT+TGG - chr1.1:942313-942332 None:intergenic 35.0%
CTATGATGCAGAAAATGAGT+GGG + chr1.1:941617-941636 MS.gene27047:intron 35.0%
CTTTAGATTAATGGTGTGTC+CGG + chr1.1:940002-940021 MS.gene27047:intron 35.0%
GATGGTATTTATTGTGTCTG+TGG + chr1.1:942782-942801 MS.gene27047:intron 35.0%
GCACCTACACTTTAGATTAA+TGG + chr1.1:939993-940012 MS.gene27047:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG - chr1.1:941789-941808 None:intergenic 35.0%
GGAATAAATGTTTGTGCTTG+TGG + chr1.1:940175-940194 MS.gene27047:intron 35.0%
GGATTGTAGAAAATCGTGAA+TGG - chr1.1:940849-940868 None:intergenic 35.0%
GGGAAGTCAAACATATGATT+AGG - chr1.1:942002-942021 None:intergenic 35.0%
GTTAAAGAGATGAGTGAAGA+AGG + chr1.1:943201-943220 MS.gene27047:CDS 35.0%
TAAGGCTATATAGCACTAGT+TGG + chr1.1:939791-939810 MS.gene27047:intron 35.0%
TAATAGTGTCAGTACCACTA+TGG + chr1.1:942409-942428 MS.gene27047:CDS 35.0%
TATGATGCAGAAAATGAGTG+GGG + chr1.1:941618-941637 MS.gene27047:intron 35.0%
TCTATGATGCAGAAAATGAG+TGG + chr1.1:941616-941635 MS.gene27047:intron 35.0%
TCTTGTACAGCCATAAAAGA+GGG - chr1.1:939823-939842 None:intergenic 35.0%
TGAAATGCAACAGCAAAAAG+TGG - chr1.1:939407-939426 None:intergenic 35.0%
TGTTGCAGCTTTCAAAAGAT+GGG - chr1.1:942022-942041 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG - chr1.1:942199-942218 None:intergenic 35.0%
TTCTAAGTGGCGAAATATTC+AGG + chr1.1:941235-941254 MS.gene27047:CDS 35.0%
TTCTTGTACAGCCATAAAAG+AGG - chr1.1:939824-939843 None:intergenic 35.0%
TTGTTGCAGCTTTCAAAAGA+TGG - chr1.1:942023-942042 None:intergenic 35.0%
TTTAGGCTTGAAGTCAAAGA+AGG - chr1.1:941499-941518 None:intergenic 35.0%
TTTAGTCCAAACTCAGATAC+TGG - chr1.1:939655-939674 None:intergenic 35.0%
! AACAACTAGTTCTTGAGTTG+GGG - chr1.1:939894-939913 None:intergenic 35.0%
! AACTATGTGTGTTTGAGATC+AGG - chr1.1:940046-940065 None:intergenic 35.0%
! CTCATCTCTTTAACTTCTGA+AGG - chr1.1:943195-943214 None:intergenic 35.0%
! CTTTGACTTCAAGCCTAAAA+CGG + chr1.1:941500-941519 MS.gene27047:CDS 35.0%
! GAACAACTAGTTCTTGAGTT+GGG - chr1.1:939895-939914 None:intergenic 35.0%
! GAAGAAAAGGCTAAAAGTGT+TGG + chr1.1:938769-938788 MS.gene27047:CDS 35.0%
! GACATTGATGATTCTAACTG+AGG - chr1.1:942152-942171 None:intergenic 35.0%
! GCGATTCTGTTCTTTTTATC+AGG + chr1.1:940410-940429 MS.gene27047:CDS 35.0%
! GTTTTGCAGAAAAACTCAGT+TGG - chr1.1:939691-939710 None:intergenic 35.0%
! TAATCTAAAGTGTAGGTGCT+AGG - chr1.1:939992-940011 None:intergenic 35.0%
! TACGTATACTAGTTTCCATC+CGG - chr1.1:942944-942963 None:intergenic 35.0%
! TCAATCTATGTCCATTGGTT+TGG + chr1.1:940141-940160 MS.gene27047:intron 35.0%
! TCACGATTTTCTACAATCCA+AGG + chr1.1:940850-940869 MS.gene27047:CDS 35.0%
! TTCAATGAACCAAGAAGTGT+GGG + chr1.1:942301-942320 MS.gene27047:CDS 35.0%
! TTGCTCACTAGTGGTTATTT+TGG + chr1.1:941592-941611 MS.gene27047:intron 35.0%
!! GTTTTGATAATAGGCTGACA+AGG + chr1.1:939460-939479 MS.gene27047:intron 35.0%
!!! CGAGTAATGGATTTTGAGTT+TGG - chr1.1:942100-942119 None:intergenic 35.0%
!!! GTATTATTGGTTTTGGCGAT+AGG - chr1.1:941957-941976 None:intergenic 35.0%
!!! TTCGGATTTTGTTATTCCAC+TGG + chr1.1:940972-940991 MS.gene27047:CDS 35.0%
AACAACTGAGATGGAAGACT+AGG - chr1.1:939331-939350 None:intergenic 40.0%
AAGTGGCGAAATATTCAGGT+AGG + chr1.1:941239-941258 MS.gene27047:intron 40.0%
ACAACTGAGATGGAAGACTA+GGG - chr1.1:939330-939349 None:intergenic 40.0%
ACATTTCGACATATCTACCG+AGG + chr1.1:939938-939957 MS.gene27047:CDS 40.0%
ACCATACAATTAGTCGCGAA+TGG - chr1.1:941298-941317 None:intergenic 40.0%
ACCATTCGCGACTAATTGTA+TGG + chr1.1:941294-941313 MS.gene27047:intron 40.0%
ACTTGACACAACAACTGAGA+TGG - chr1.1:939340-939359 None:intergenic 40.0%
AGCTTACAGAATTCAGTGGT+TGG - chr1.1:939517-939536 None:intergenic 40.0%
AGTAGAAGGATCAACCATAG+TGG - chr1.1:942426-942445 None:intergenic 40.0%
ATATTTCGCCACTTAGAACC+AGG - chr1.1:941233-941252 None:intergenic 40.0%
CAAACATGCATTCAATTGCG+CGG - chr1.1:942888-942907 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+AGG - chr1.1:942302-942321 None:intergenic 40.0%
CTGAATGACACAAAAGGTTC+CGG + chr1.1:942922-942941 MS.gene27047:CDS 40.0%
CTTCAATGAACCAAGAAGTG+TGG + chr1.1:942300-942319 MS.gene27047:CDS 40.0%
CTTGTCTATTACTTCCCTCA+AGG + chr1.1:939065-939084 MS.gene27047:CDS 40.0%
GAACTAGTATGAGCGAGTAA+TGG - chr1.1:942113-942132 None:intergenic 40.0%
GATCTTGTGTAGGGAATTTG+TGG + chr1.1:943140-943159 MS.gene27047:intron 40.0%
GGAAAGATGAAAAGGCTTTC+TGG - chr1.1:941478-941497 None:intergenic 40.0%
GGTGTGGTGATAAGCAAAAT+CGG + chr1.1:941428-941447 MS.gene27047:CDS 40.0%
GTAGAAGCTGCAACCTTAAA+AGG - chr1.1:939274-939293 None:intergenic 40.0%
GTGGACTTCATATCTTGCAA+GGG - chr1.1:941825-941844 None:intergenic 40.0%
GTGTGGTGATAAGCAAAATC+GGG + chr1.1:941429-941448 MS.gene27047:CDS 40.0%
GTGTTTCCAGTATCTGAGTT+TGG + chr1.1:939646-939665 MS.gene27047:CDS 40.0%
TCAGTGATGTCGATCCTTTA+AGG + chr1.1:941204-941223 MS.gene27047:CDS 40.0%
TCTTGTGTAGGGAATTTGTG+GGG + chr1.1:943142-943161 MS.gene27047:intron 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG - chr1.1:942456-942475 None:intergenic 40.0%
TGCAGAAAATATCCTCACCT+CGG - chr1.1:939958-939977 None:intergenic 40.0%
TGGAGCATGTCAATCATTTG+AGG - chr1.1:942179-942198 None:intergenic 40.0%
TGGATTCTCTATAACCTGTG+TGG - chr1.1:941844-941863 None:intergenic 40.0%
TGTAAGGATCTAACACGATC+AGG - chr1.1:940296-940315 None:intergenic 40.0%
TGTGGACTTCATATCTTGCA+AGG - chr1.1:941826-941845 None:intergenic 40.0%
! CGAACAACTAGTTCTTGAGT+TGG - chr1.1:939896-939915 None:intergenic 40.0%
! CTATATAGCCTTACCAATGG+AGG - chr1.1:939784-939803 None:intergenic 40.0%
! CTCCACTGTTCCTTCATTTT+CGG - chr1.1:941676-941695 None:intergenic 40.0%
! GATTTTCTGTATTTGGCCAG+TGG - chr1.1:940991-941010 None:intergenic 40.0%
! GTGCTATATAGCCTTACCAA+TGG - chr1.1:939787-939806 None:intergenic 40.0%
! GTGCTTGAAAGGTGAACTTT+TGG - chr1.1:941864-941883 None:intergenic 40.0%
! TAGCAGAAGTAATCTGAGAC+TGG - chr1.1:942547-942566 None:intergenic 40.0%
! TCCACTGTTCCTTCATTTTC+GGG - chr1.1:941675-941694 None:intergenic 40.0%
! TCTTGCAAGGGAACTCTTTT+AGG - chr1.1:941813-941832 None:intergenic 40.0%
!! AAAAGTGTTGGAGGAGTTGT+TGG + chr1.1:938781-938800 MS.gene27047:CDS 40.0%
!! ACAACTAGTTCTTGAGTTGG+GGG - chr1.1:939893-939912 None:intergenic 40.0%
!! AGCAAAATCGGGTTAGTGTT+TGG + chr1.1:941440-941459 MS.gene27047:CDS 40.0%
!! GAAAAGGCTAAAAGTGTTGG+AGG + chr1.1:938772-938791 MS.gene27047:CDS 40.0%
!! GCAAAATCGGGTTAGTGTTT+GGG + chr1.1:941441-941460 MS.gene27047:CDS 40.0%
!! GTTTGTTTGTCGGCTCAAAA+AGG + chr1.1:940377-940396 MS.gene27047:CDS 40.0%
!! TCAGCAGAAAGTACTGATGA+TGG - chr1.1:940771-940790 None:intergenic 40.0%
!! TGGTTCATTGAAGGTATCGA+GGG - chr1.1:942293-942312 None:intergenic 40.0%
!! TTGGTTCATTGAAGGTATCG+AGG - chr1.1:942294-942313 None:intergenic 40.0%
AAGAGACACCTTCTCACAAC+GGG + chr1.1:940349-940368 MS.gene27047:CDS 45.0%
ACCAATCCGAACCTACACAA+AGG + chr1.1:942688-942707 MS.gene27047:CDS 45.0%
ACCCGAAAATGAAGGAACAG+TGG + chr1.1:941671-941690 MS.gene27047:CDS 45.0%
ACCTGTTCACTATGTCCTTG+AGG - chr1.1:939083-939102 None:intergenic 45.0%
ACCTTTGTGTAGGTTCGGAT+TGG - chr1.1:942692-942711 None:intergenic 45.0%
ACTTGAGGCAATGACACAAG+AGG - chr1.1:939038-939057 None:intergenic 45.0%
AGAGTTGTCTCGCAGAGAAA+AGG - chr1.1:942588-942607 None:intergenic 45.0%
AGTGATACTAGCACACATGG+TGG + chr1.1:939721-939740 MS.gene27047:CDS 45.0%
ATCGAGGGATTCACTACTTG+AGG - chr1.1:942278-942297 None:intergenic 45.0%
ATGACACAAAAGGTTCCGGA+TGG + chr1.1:942926-942945 MS.gene27047:CDS 45.0%
CAAATCTCATGCCAGCTGAA+AGG - chr1.1:941029-941048 None:intergenic 45.0%
CATTCGTCTACGTCTATCTG+CGG - chr1.1:942233-942252 None:intergenic 45.0%
CCACAGGTGATCAACAACAA+TGG + chr1.1:941753-941772 MS.gene27047:CDS 45.0%
CCCAAATATCCGGATTGCAA+CGG - chr1.1:941526-941545 None:intergenic 45.0%
CCGTTGCAATCCGGATATTT+GGG + chr1.1:941523-941542 MS.gene27047:CDS 45.0%
CCTGTTCACTATGTCCTTGA+GGG - chr1.1:939082-939101 None:intergenic 45.0%
CGCGCAATTGAATGCATGTT+TGG + chr1.1:942886-942905 MS.gene27047:CDS 45.0%
CTTGAGGCAATGACACAAGA+GGG - chr1.1:939037-939056 None:intergenic 45.0%
CTTTCAGCTGGCATGAGATT+TGG + chr1.1:941027-941046 MS.gene27047:CDS 45.0%
GAAGAGACACCTTCTCACAA+CGG + chr1.1:940348-940367 MS.gene27047:CDS 45.0%
GAATTATGGCATGCTTGTGC+TGG + chr1.1:939011-939030 MS.gene27047:CDS 45.0%
GAGAGTGATGTTCTGCTAGT+TGG + chr1.1:942970-942989 MS.gene27047:CDS 45.0%
GATGGAAGACTAGGGTAGTT+TGG - chr1.1:939322-939341 None:intergenic 45.0%
GCAAGATATGAAGTCCACAC+AGG + chr1.1:941827-941846 MS.gene27047:CDS 45.0%
GCTAGTGATACTAGCACACA+TGG + chr1.1:939718-939737 MS.gene27047:CDS 45.0%
GCTAGTTGGAGATGATCCTT+GGG + chr1.1:942984-943003 MS.gene27047:CDS 45.0%
GGCTCAAAAAGGCTTAAAGC+AGG + chr1.1:940388-940407 MS.gene27047:CDS 45.0%
GGTCTGCTGAATGACACAAA+AGG + chr1.1:942916-942935 MS.gene27047:CDS 45.0%
GTATGCTCTCTGTGCTTGAA+AGG - chr1.1:941875-941894 None:intergenic 45.0%
GTCTGACGCATATCATACAC+CGG - chr1.1:940024-940043 None:intergenic 45.0%
GTCTTGTACTTGCTCACTAG+TGG + chr1.1:941583-941602 MS.gene27047:intron 45.0%
GTGCAAAAAGCAGGTTCTGT+AGG + chr1.1:942817-942836 MS.gene27047:CDS 45.0%
TATTTGCAGGGCATGTCCTT+CGG + chr1.1:940954-940973 MS.gene27047:intron 45.0%
TCTGCTGATAGCATGCACAT+TGG + chr1.1:940783-940802 MS.gene27047:CDS 45.0%
TGCCAACCATGCAATCTTGA+GGG - chr1.1:942502-942521 None:intergenic 45.0%
TGCTAGTTGGAGATGATCCT+TGG + chr1.1:942983-943002 MS.gene27047:CDS 45.0%
TTAGAACCAGGCCACCTTAA+AGG - chr1.1:941221-941240 None:intergenic 45.0%
TTGCCAACCATGCAATCTTG+AGG - chr1.1:942503-942522 None:intergenic 45.0%
! AGCTGTTTCCTCCATTGGTA+AGG + chr1.1:939773-939792 MS.gene27047:intron 45.0%
! AGGGTAGTTTGGAATCTGTG+AGG - chr1.1:939311-939330 None:intergenic 45.0%
! ATGTTTGAGACCGAGGAATC+GGG + chr1.1:941054-941073 MS.gene27047:CDS 45.0%
! CCATTGTTGTTGATCACCTG+TGG - chr1.1:941756-941775 None:intergenic 45.0%
! CTTGTGTCATTGCCTCAAGT+GGG + chr1.1:939038-939057 MS.gene27047:CDS 45.0%
! GAATGCATGTTTGGACTGGA+CGG + chr1.1:942895-942914 MS.gene27047:CDS 45.0%
! GATGTTTGAGACCGAGGAAT+CGG + chr1.1:941053-941072 MS.gene27047:CDS 45.0%
! GGAAAAGCTGTTTCCTCCAT+TGG + chr1.1:939768-939787 MS.gene27047:CDS 45.0%
! GTGATGTCGATCCTTTAAGG+TGG + chr1.1:941207-941226 MS.gene27047:CDS 45.0%
! TAGCACACATGGTGGCTTTT+CGG + chr1.1:939729-939748 MS.gene27047:CDS 45.0%
! TCTTGTGTCATTGCCTCAAG+TGG + chr1.1:939037-939056 MS.gene27047:CDS 45.0%
! TGGTATGATGTTTGAGACCG+AGG + chr1.1:941047-941066 MS.gene27047:CDS 45.0%
! TTGGTTGCGTCCCTCTTTTA+TGG + chr1.1:939810-939829 MS.gene27047:intron 45.0%
! TTGTGTCATTGCCTCAAGTG+GGG + chr1.1:939039-939058 MS.gene27047:CDS 45.0%
! TTTTCTCTGCGAGACAACTC+TGG + chr1.1:942587-942606 MS.gene27047:CDS 45.0%
! TTTTGCTTATCACCACACCC+TGG - chr1.1:941427-941446 None:intergenic 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG + chr1.1:940367-940386 MS.gene27047:CDS 45.0%
!! GTTGTGAGAAGGTGTCTCTT+CGG - chr1.1:940349-940368 None:intergenic 45.0%
!!! ATCGGTGTCGGTTTTATGTG+TGG + chr1.1:940089-940108 MS.gene27047:intron 45.0%
AACTCCAACCCGTTGTGAGA+AGG - chr1.1:940360-940379 None:intergenic 50.0%
CACCCTCAAGATTGCATGGT+TGG + chr1.1:942497-942516 MS.gene27047:CDS 50.0%
CCCTCAAGGACATAGTGAAC+AGG + chr1.1:939079-939098 MS.gene27047:CDS 50.0%
CGCAGATAGACGTAGACGAA+TGG + chr1.1:942231-942250 MS.gene27047:CDS 50.0%
CTAAAACGGCCGTTGCAATC+CGG + chr1.1:941514-941533 MS.gene27047:CDS 50.0%
GAGAAGTCGCAATTGCGAGT+TGG + chr1.1:940711-940730 MS.gene27047:CDS 50.0%
GCCGTTGCAATCCGGATATT+TGG + chr1.1:941522-941541 MS.gene27047:CDS 50.0%
GGGATGAAGCTTCTGAACAG+CGG + chr1.1:943222-943241 MS.gene27047:CDS 50.0%
GGGTGAGAAACTTACTCCCA+AGG - chr1.1:943003-943022 None:intergenic 50.0%
GTGTGACAGGTGCAAAAAGC+AGG + chr1.1:942808-942827 MS.gene27047:intron 50.0%
TATGGGACTCACCTTTCAGC+TGG + chr1.1:941015-941034 MS.gene27047:CDS 50.0%
TCAGCACCCTCAAGATTGCA+TGG + chr1.1:942493-942512 MS.gene27047:CDS 50.0%
TCGACATATCTACCGAGGTG+AGG + chr1.1:939943-939962 MS.gene27047:intron 50.0%
TCGATTAGCAGCTGCATGAG+CGG - chr1.1:940823-940842 None:intergenic 50.0%
TCTAACTGAGGCTGCTGCAT+TGG - chr1.1:942140-942159 None:intergenic 50.0%
! AGTGTTGGAGGAGTTGTTGG+TGG + chr1.1:938784-938803 MS.gene27047:CDS 50.0%
! GCGATAGGCAGCAACTTTTC+CGG - chr1.1:941942-941961 None:intergenic 50.0%
! TGTGTCATTGCCTCAAGTGG+GGG + chr1.1:939040-939059 MS.gene27047:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG + chr1.1:940718-940737 MS.gene27047:CDS 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG + chr1.1:941222-941241 MS.gene27047:CDS 50.0%
AGGCTGAATGGGATGAGCCA+GGG + chr1.1:941407-941426 MS.gene27047:intron 55.0%
GACACCTTCTCACAACGGGT+TGG + chr1.1:940353-940372 MS.gene27047:CDS 55.0%
GTGTCTGTGGTCTGTGTGAC+AGG + chr1.1:942795-942814 MS.gene27047:intron 55.0%
TAGACAAGACCCCCCACTTG+AGG - chr1.1:939053-939072 None:intergenic 55.0%
TCTCTGCGAGACAACTCTGG+TGG + chr1.1:942590-942609 MS.gene27047:CDS 55.0%
! GTGTCATTGCCTCAAGTGGG+GGG + chr1.1:939041-939060 MS.gene27047:CDS 55.0%
!! CGGATTGCAACGGCCGTTTT+AGG - chr1.1:941516-941535 None:intergenic 55.0%
!! CTGAACAGCGGAGCATTGCA+AGG + chr1.1:943234-943253 MS.gene27047:CDS 55.0%
!! GTCGATCCTTTAAGGTGGCC+TGG + chr1.1:941212-941231 MS.gene27047:CDS 55.0%
CAGGCTGAATGGGATGAGCC+AGG + chr1.1:941406-941425 MS.gene27047:intron 60.0%
CCTGCGCTTACCCGATTCCT+CGG - chr1.1:941067-941086 None:intergenic 60.0%
GAATGGGATGAGCCAGGGTG+TGG + chr1.1:941412-941431 MS.gene27047:CDS 60.0%
TTCGGTTCCACGCAGAGCTG+CGG + chr1.1:939747-939766 MS.gene27047:CDS 60.0%
! AGCTTTTCCGCAGCTCTGCG+TGG - chr1.1:939757-939776 None:intergenic 60.0%
CCGAGGAATCGGGTAAGCGC+AGG + chr1.1:941064-941083 MS.gene27047:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 938757 943269 938757 ID=MS.gene27047
chr1.1 mRNA 938757 943269 938757 ID=MS.gene27047.t1;Parent=MS.gene27047
chr1.1 exon 938757 938859 938757 ID=MS.gene27047.t1.exon1;Parent=MS.gene27047.t1
chr1.1 CDS 938757 938859 938757 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 938988 939100 938988 ID=MS.gene27047.t1.exon2;Parent=MS.gene27047.t1
chr1.1 CDS 938988 939100 938988 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 939280 939378 939280 ID=MS.gene27047.t1.exon3;Parent=MS.gene27047.t1
chr1.1 CDS 939280 939378 939280 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 939473 939529 939473 ID=MS.gene27047.t1.exon4;Parent=MS.gene27047.t1
chr1.1 CDS 939473 939529 939473 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 939637 939789 939637 ID=MS.gene27047.t1.exon5;Parent=MS.gene27047.t1
chr1.1 CDS 939637 939789 939637 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 939875 939959 939875 ID=MS.gene27047.t1.exon6;Parent=MS.gene27047.t1
chr1.1 CDS 939875 939959 939875 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 940341 940431 940341 ID=MS.gene27047.t1.exon7;Parent=MS.gene27047.t1
chr1.1 CDS 940341 940431 940341 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 940707 940871 940707 ID=MS.gene27047.t1.exon8;Parent=MS.gene27047.t1
chr1.1 CDS 940707 940871 940707 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 940963 941085 940963 ID=MS.gene27047.t1.exon9;Parent=MS.gene27047.t1
chr1.1 CDS 940963 941085 940963 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 941181 941256 941181 ID=MS.gene27047.t1.exon10;Parent=MS.gene27047.t1
chr1.1 CDS 941181 941256 941181 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 941409 941544 941409 ID=MS.gene27047.t1.exon11;Parent=MS.gene27047.t1
chr1.1 CDS 941409 941544 941409 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 941628 942709 941628 ID=MS.gene27047.t1.exon12;Parent=MS.gene27047.t1
chr1.1 CDS 941628 942709 941628 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 942817 943007 942817 ID=MS.gene27047.t1.exon13;Parent=MS.gene27047.t1
chr1.1 CDS 942817 943007 942817 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
chr1.1 exon 943152 943269 943152 ID=MS.gene27047.t1.exon14;Parent=MS.gene27047.t1
chr1.1 CDS 943152 943269 943152 ID=cds.MS.gene27047.t1;Parent=MS.gene27047.t1
Gene Sequence

>MS.gene27047

ATGGCTTCCTTAGAAGAAAAGGCTAAAAGTGTTGGAGGAGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGTAAGTTCATGTTTCCTTCTCTTTTTTCTTAATTTTTACAATGGTTATGTTTTATGGTTTCATAGTTTTCTTAGTAGAAATTGAGATTTTGATTTGATTGATATTTGGTTGTACTAATTTTTGTTTAGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGCCCTCTTGTGTCATTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTAACATTCAAACTCAAGAATCTCTTTTTTATGTTTTAACATTTTTAAGTGCTAATTCATTCATTGCTTATGTTAGTATTGTAGTTTTAAGTTTCTTTGGTTAGAATTAGCAAGATTCTAGTTTCTATTGAATGGTTGAAACATGTGTTGAATTTTTGTTTGTGTTTTGTCCTTTTAAGGTTGCAGCTTCTACTAGAAGAATAGCTACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGTGAGTAGTGTTCTCTCTTGATTTACCACTTTTTGCTGTTGCATTTCAACTTCAAATTATCATAACCCCTTTAAATTGTATGTTTTGATAATAGGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGTAAGCTATATGAAGTAGTTAGTTCTAGAATTATTGTTGTTGTTATTGTACATCTAAATGTTATTGGTTATGATTATTTTTGATGTATTATTTTTCATTTGTGTTAGGAAAAAGAAGTGTTTCCAGTATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACGGCTAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTGTTTCCTCCATTGGTAAGGCTATATAGCACTAGTTGGTTGCGTCCCTCTTTTATGGCTGTACAAGAACCCTCATTTGATTAGTGTGTTTTGGTTTTAGGATTACACAATTCAACCCCCAACTCAAGAACTAGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATCTACCGAGGTGAGGATATTTTCTGCATCTATGTAGCACCTAGCACCTACACTTTAGATTAATGGTGTGTCCGGTGTATGATATGCGTCAGACCTGATCTCAAACACACATAGTTACATTCAATTTTTTCAGATTATTATCGGTGTCGGTTTTATGTGTGGTGTTCGCATCTGTGTTAGTGCTTTATAGTTCAATCTATGTCCATTGGTTTGGTAAAATAAACAGGAATAAATGTTTGTGCTTGTGGATTATATATTGCATTATTTTAACTGCAACTTTATTATTGTTTGGGTTTCAATGTTTTCTTTATCTTAACCTTCAAAATAATTAGTCTTGGAAAAGCCTGATCGTGTTAGATCCTTACATTTTTTCCCTAAATTTTTCATGTAGGTCAGCCGAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGTAAAATTTGTTTGCTTCATTTTTTGTCAAGTAGCCAAACATGATACGAAACTCTGTTACTATCTGAATATAGGTAGAATAACTAGTGTGCAGAACAAAGTCTGCATACTTTTTTTAATTATACTTGTTTTTTCTCCATAGTTACATTGCAATGTAATGGTTTTCAATATTAGGAAAATTGTGGAATCCTGATTAGCAACTTGTTATTTTAAATTCCAACCAATAATCATCTCTACATAAATTAATACTAAATGTGATGTGTTAATTGTTACAAGGGATGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCCGCTCATGCAGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGTATACCTAAATATGTTTATACCTCACCTGACATATAATATTTTTAGATCTAATCGTGGTACTAATTTCTTCTTGAGTGTATTATTTGCAGGGCATGTCCTTCGGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGGACTCACCTTTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGGTAATTTCCTGAATTCTTCTGAACTGTTTTCTGTGATATGTGCAAACTCCTGAACTAACTATAATAGTTGATATATATTTCTTCTTATTCTGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTCGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTAGGTTAAGTTCTAGTAACCCCAGTTATTAAGATATACCATTCGCGACTAATTGTATGGTTTCATCTAATATTTCTATAAAACATACTCTATGTTGGACCTTAATCTTAGTAATATAGTCGGCTTAAATAAATTTCTTTGTAAATAAACAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGGGTTAGTGTTTGGGAGATTGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGCCTAAAACGGCCGTTGCAATCCGGATATTTGGGTACGTTTCTTTATTCTCTATTCCCACCTTATCAAAATGTCTTGTACTTGCTCACTAGTGGTTATTTTGGTTCTATGATGCAGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGAAGGAACAGTGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTGATCAACAACAATGGAGCCTTTTTACCTATCATGCAACAAGATTATGCTCCTAAAAGAGTTCCCTTGCAAGATATGAAGTCCACACAGGTTATAGAGAATCCAAAAGTTCACCTTTCAAGCACAGAGAGCATACCTAATAACACCTTTAACATGCATTCATTGTTGAAAAGTGAGCAACCGGAAAAGTTGCTGCCTATCGCCAAAACCAATAATACAAAATTAGAATCTGAGGTGTTACCTAATCATATGTTTGACTTCCCATCTTTTGAAAGCTGCAACAACATCGAAAAAGTGAATACGGCAAACCAACTAACATATTATAATCAAAACCAAAACCAAACTCAAAATCCATTACTCGCTCATACTAGTTCATCGCCAATGCAGCAGCCTCAGTTAGAATCATCAATGTCACATCCTCAAATGATTGACATGCTCCAACCCGATTCTTCTATTGTAAACAGCATGATTCCGCAGATAGACGTAGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCGATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTATTAATAGTGTCAGTACCACTATGGTTGATCCTTCTACTTCAAACACCATTTTCGACGACTTTTGCTCAATGAAAGATAAAGATTTTCAGCACCCTCAAGATTGCATGGTTGGCAACTTAAGTTCTAGTCAAGATGGCCAGTCTCAGATTACTTCTGCTAGTCTAGCTGAGTCGCACGCCTTTTCTCTGCGAGACAACTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGTTTTCTGCAGAATAATAACTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTAACATTATTTCTGTAATGTTGGCATGAATGTTACTTGTTTTTTCCAATTTGTTTCGATCTTGTATATCATGATGGTATTTATTGTGTCTGTGGTCTGTGTGACAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAACTAGTATACGTAGATTATGAGAGTGATGTTCTGCTAGTTGGAGATGATCCTTGGGAGTAAGTTTCTCACCCTTCTTTCGTGTAATGTTTGATCTTTGACACTTAAGTTTAATAGTCTTATTTTGGTTACATTTTTTCAGACAAAAAAAAGACCCTTTTTAGATATTAAAACTTTTGGAACAATGTTGTGATCTTGTGTAGGGAATTTGTGGGGTGTGTCCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTGAACAGCGGAGCATTGCAAGGAATCAATGTGTGA
Protein sequence

>MS.gene27047.t1

MASLEEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTHLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENEGTVELSNSMPNLYQENMMKMFYKPQVINNNGAFLPIMQQDYAPKRVPLQDMKSTQVIENPKVHLSSTESIPNNTFNMHSLLKSEQPEKLLPIAKTNNTKLESEVLPNHMFDFPSFESCNNIEKVNTANQLTYYNQNQNQTQNPLLAHTSSSPMQQPQLESSMSHPQMIDMLQPDSSIVNSMIPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDNYVKNFNLRDLSAESNNQSEICVNVDAINSVSTTMVDPSTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV