Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072067.t1 | GAU17253.1 | 28.8 | 413 | 83 | 4 | 10 | 245 | 6 | 384 | 3.80E-28 | 135.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072067.t1 | O48790 | 39.4 | 66 | 40 | 0 | 180 | 245 | 308 | 373 | 7.0e-07 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072067.t1 | A0A2Z6LIY0 | 28.8 | 413 | 83 | 4 | 10 | 245 | 6 | 384 | 2.7e-28 | 135.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene072067 | 0.829303 | 5.55E-55 | -1.69E-46 |
| MS.gene050026 | MS.gene072067 | 0.85343 | 2.40E-61 | -1.69E-46 |
| MS.gene050029 | MS.gene072067 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene072067 | 0.813565 | 2.40E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene072067 | 0.813894 | 2.03E-51 | -1.69E-46 |
| MS.gene050394 | MS.gene072067 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene072067 | 0.836039 | 1.18E-56 | -1.69E-46 |
| MS.gene050953 | MS.gene072067 | 0.832617 | 8.53E-56 | -1.69E-46 |
| MS.gene051181 | MS.gene072067 | 0.836813 | 7.51E-57 | -1.69E-46 |
| MS.gene051594 | MS.gene072067 | 0.818175 | 2.25E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene072067 | 0.806797 | 6.91E-50 | -1.69E-46 |
| MS.gene052208 | MS.gene072067 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene052333 | MS.gene072067 | 0.824436 | 8.08E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene072067 | 0.843607 | 1.26E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene072067 | 0.812666 | 3.78E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene072067 | 0.822777 | 1.98E-53 | -1.69E-46 |
| MS.gene052586 | MS.gene072067 | 0.804813 | 1.80E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene072067 | 0.822947 | 1.80E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene072067 | 0.803957 | 2.72E-49 | -1.69E-46 |
| MS.gene053145 | MS.gene072067 | 0.82085 | 5.52E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene072067 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene053202 | MS.gene072067 | 0.815794 | 7.70E-52 | -1.69E-46 |
| MS.gene053646 | MS.gene072067 | 0.80347 | 3.43E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene072067 | 0.81014 | 1.34E-50 | -1.69E-46 |
| MS.gene053974 | MS.gene072067 | 0.836242 | 1.05E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene072067 | 0.831768 | 1.38E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene072067 | -0.833759 | 4.43E-56 | -1.69E-46 |
| MS.gene05435 | MS.gene072067 | 0.814904 | 1.21E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene072067 | 0.829723 | 4.39E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene072067 | 0.812508 | 4.09E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene072067 | 0.818007 | 2.45E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene072067 | 0.803362 | 3.61E-49 | -1.69E-46 |
| MS.gene055056 | MS.gene072067 | 0.805076 | 1.59E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene072067 | 0.807598 | 4.68E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene072067 | 0.809269 | 2.06E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene072067 | 0.808952 | 2.41E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene072067 | 0.825771 | 3.91E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene072067 | 0.83167 | 1.46E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene072067 | 0.804205 | 2.42E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene072067 | 0.802387 | 5.75E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene072067 | 0.825458 | 4.64E-54 | -1.69E-46 |
| MS.gene058515 | MS.gene072067 | 0.808398 | 3.16E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene072067 | 0.800934 | 1.14E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene072067 | 0.829911 | 3.95E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene072067 | 0.821796 | 3.34E-53 | -1.69E-46 |
| MS.gene059276 | MS.gene072067 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene072067 | 0.82211 | 2.82E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene072067 | 0.801236 | 9.90E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene072067 | 0.832318 | 1.01E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene072067 | 0.811567 | 6.56E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene072067 | 0.810537 | 1.10E-50 | -1.69E-46 |
| MS.gene060905 | MS.gene072067 | 0.803716 | 3.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072067.t1 | MTR_2g005960 | 55.689 | 167 | 32 | 4 | 10 | 139 | 10 | 171 | 4.27e-48 | 160 |
| MS.gene072067.t1 | MTR_5g088980 | 42.188 | 64 | 37 | 0 | 179 | 242 | 342 | 405 | 4.51e-11 | 63.2 |
| MS.gene072067.t1 | MTR_7g089080 | 40.580 | 69 | 41 | 0 | 180 | 248 | 381 | 449 | 8.07e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATGCTATTAATAATT+TGG | 0.165741 | 2.4:+76244113 | MS.gene072067:CDS |
| TTCGCCACCACCTCACATTT+TGG | 0.213999 | 2.4:+76245651 | MS.gene072067:CDS |
| TAGATTAATTAGCATATGTT+TGG | 0.307166 | 2.4:+76245616 | MS.gene072067:CDS |
| CAAGTTCATGCTGTAGAGTT+TGG | 0.308152 | 2.4:-76245752 | None:intergenic |
| TTAGCTGGCACTTCTAATTC+TGG | 0.308253 | 2.4:-76243369 | None:intergenic |
| CAATATCTGCAGAACCTATC+TGG | 0.343173 | 2.4:+76245292 | MS.gene072067:CDS |
| AAACTTTCATGCAAAACTAT+TGG | 0.344232 | 2.4:+76243222 | MS.gene072067:CDS |
| ATGCTCGTTCTATACTCAAT+AGG | 0.349417 | 2.4:+76245254 | MS.gene072067:CDS |
| TACTCAATAGGGTTCCATAT+TGG | 0.384695 | 2.4:+76245266 | MS.gene072067:CDS |
| GTTCTTTGCAGTAGCCAGAT+AGG | 0.397989 | 2.4:-76245306 | None:intergenic |
| AGAGGTGGCCATCAAGTTCT+TGG | 0.398498 | 2.4:+76243060 | MS.gene072067:CDS |
| CTATGTATCTTGTGGAAATC+AGG | 0.412792 | 2.4:-76245683 | None:intergenic |
| TGCAGATATTGAGTCCAATA+TGG | 0.414124 | 2.4:-76245280 | None:intergenic |
| AGATTAATTAGCATATGTTT+GGG | 0.417427 | 2.4:+76245617 | MS.gene072067:CDS |
| CGATATCTCCAAGAACTTGA+TGG | 0.417687 | 2.4:-76243068 | None:intergenic |
| TTTCTTGCAGGGAGAGATAA+GGG | 0.418838 | 2.4:+76243021 | MS.gene072067:intron |
| ATGTCAACAGTCTGATCCTT+GGG | 0.430682 | 2.4:-76243696 | None:intergenic |
| ATGTCAACATCATGATTCTC+TGG | 0.433621 | 2.4:-76244084 | None:intergenic |
| AGATGATGCTATTAATAATA+TGG | 0.435281 | 2.4:+76243725 | MS.gene072067:CDS |
| TGCTCGTTCTATACTCAATA+GGG | 0.441679 | 2.4:+76245255 | MS.gene072067:CDS |
| TCATGCTGTAGAGTTTGGTT+TGG | 0.446820 | 2.4:-76245747 | None:intergenic |
| CATCAAGTTCTTGGAGATAT+CGG | 0.449503 | 2.4:+76243069 | MS.gene072067:CDS |
| GCACTTCTAATTCTGGTACC+AGG | 0.460854 | 2.4:-76243362 | None:intergenic |
| TGCTGTAGAGTTTGGTTTGG+CGG | 0.462637 | 2.4:-76245744 | None:intergenic |
| CATGTCAACAGTCTGATCCT+TGG | 0.464984 | 2.4:-76243697 | None:intergenic |
| AAGAAATCAAAATGTGTATG+AGG | 0.469215 | 2.4:+76244304 | MS.gene072067:CDS |
| GGAGATATCGGTAATCTTGA+GGG | 0.474467 | 2.4:+76243081 | MS.gene072067:CDS |
| GTTTCTTGCAGGGAGAGATA+AGG | 0.481740 | 2.4:+76243020 | MS.gene072067:intron |
| GTAGAGTTTGGTTTGGCGGT+TGG | 0.493204 | 2.4:-76245740 | None:intergenic |
| AGAACACTCACTGCTGCAGC+TGG | 0.502496 | 2.4:-76243253 | None:intergenic |
| CACTTCTAATTCTGGTACCA+GGG | 0.504441 | 2.4:-76243361 | None:intergenic |
| GTGTATGAGGATTATTATTG+TGG | 0.508172 | 2.4:+76244317 | MS.gene072067:CDS |
| CTGGCTCAAATGTCAAGATC+CGG | 0.512046 | 2.4:-76244065 | None:intergenic |
| AGAGCAATATGACCTTTCTC+AGG | 0.515131 | 2.4:-76245516 | None:intergenic |
| TGGAGATATCGGTAATCTTG+AGG | 0.517970 | 2.4:+76243080 | MS.gene072067:CDS |
| CCAACTCTTGTTCGAGCCCA+AGG | 0.521673 | 2.4:+76243680 | MS.gene072067:CDS |
| CCTTGGGCTCGAACAAGAGT+TGG | 0.532847 | 2.4:-76243680 | None:intergenic |
| CAAGGATCAGACTGTTGACA+TGG | 0.539460 | 2.4:+76243698 | MS.gene072067:CDS |
| AAAATTACAGAACCTTGTGA+TGG | 0.541379 | 2.4:-76243121 | None:intergenic |
| ACGCCTTGGTCATAATTAGC+TGG | 0.543546 | 2.4:-76243384 | None:intergenic |
| GAATCAAGTTTCAGACTACA+TGG | 0.549031 | 2.4:+76244272 | MS.gene072067:CDS |
| AAGCTGCACTATGTATCTTG+TGG | 0.554046 | 2.4:-76245691 | None:intergenic |
| AGCACCAAAATGTGAGGTGG+TGG | 0.560456 | 2.4:-76245655 | None:intergenic |
| AAATTCTCAAGTCCTGAGAA+AGG | 0.562056 | 2.4:+76245504 | MS.gene072067:CDS |
| CAGATACTGCGCCACACAGT+TGG | 0.564634 | 2.4:+76245431 | MS.gene072067:intron |
| TGAGGATTATTATTGTGGAA+TGG | 0.566827 | 2.4:+76244322 | MS.gene072067:CDS |
| GATTCTTTAGTACAACGCCT+TGG | 0.584480 | 2.4:-76243398 | None:intergenic |
| GAGAGATAAGGGAAAGCAGA+AGG | 0.586551 | 2.4:+76243032 | MS.gene072067:CDS |
| GGAAAGCAGAAGGCAGAAAG+AGG | 0.589384 | 2.4:+76243042 | MS.gene072067:CDS |
| AAGCAGAAGGCAGAAAGAGG+TGG | 0.604430 | 2.4:+76243045 | MS.gene072067:CDS |
| AAATTACAGAACCTTGTGAT+GGG | 0.613242 | 2.4:-76243120 | None:intergenic |
| GAGATATCGGTAATCTTGAG+GGG | 0.639049 | 2.4:+76243082 | MS.gene072067:CDS |
| AGATTTCACGACCCATCACA+AGG | 0.642914 | 2.4:+76243109 | MS.gene072067:CDS |
| AGAGAATCATGATGTTGACA+TGG | 0.645414 | 2.4:+76244086 | MS.gene072067:CDS |
| AAGGATCAGACTGTTGACAT+GGG | 0.656300 | 2.4:+76243699 | MS.gene072067:CDS |
| GTGAAAAGCACCAAAATGTG+AGG | 0.665213 | 2.4:-76245661 | None:intergenic |
| GTGCCAGCTAATTATGACCA+AGG | 0.665369 | 2.4:+76243381 | MS.gene072067:CDS |
| AAAAGCACCAAAATGTGAGG+TGG | 0.717776 | 2.4:-76245658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAATAATAATAATAA+TGG | - | chr2.4:76244588-76244607 | None:intergenic | 0.0% |
| !! | ACATATAATGAAAAAATAAA+AGG | - | chr2.4:76244191-76244210 | None:intergenic | 10.0% |
| !! | ATATTATAAAAACACTAAAA+TGG | + | chr2.4:76244709-76244728 | MS.gene072067:intron | 10.0% |
| !!! | AAATAATAATAATAATGGAT+AGG | - | chr2.4:76244583-76244602 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTCATTATATG+TGG | + | chr2.4:76244190-76244209 | MS.gene072067:intron | 10.0% |
| !! | AAAAGATGCTATTAATAATT+TGG | + | chr2.4:76244113-76244132 | MS.gene072067:CDS | 15.0% |
| !! | AAATTGAACTAAAAATACAT+AGG | - | chr2.4:76244754-76244773 | None:intergenic | 15.0% |
| !! | AAATTTATGAAATAGCAATT+TGG | + | chr2.4:76244856-76244875 | MS.gene072067:intron | 15.0% |
| !! | TAAAGAAATATCATATCTTA+AGG | + | chr2.4:76244500-76244519 | MS.gene072067:intron | 15.0% |
| !! | TTAATATTTATGTATGAATC+AGG | + | chr2.4:76243307-76243326 | MS.gene072067:intron | 15.0% |
| !! | AACACTAAAATGGAATTTAA+CGG | + | chr2.4:76244719-76244738 | MS.gene072067:intron | 20.0% |
| !! | AGAAAGAAATATTTGATGTT+TGG | - | chr2.4:76242926-76242945 | None:intergenic | 20.0% |
| !! | AGATGATGCTATTAATAATA+TGG | + | chr2.4:76243725-76243744 | MS.gene072067:CDS | 20.0% |
| !! | AGATTAATTAGCATATGTTT+GGG | + | chr2.4:76245617-76245636 | MS.gene072067:CDS | 20.0% |
| !! | ATGAAAAAATAAAAGGAGAT+AGG | - | chr2.4:76244184-76244203 | None:intergenic | 20.0% |
| !! | GTTAGGATTATATTCAAAAA+AGG | + | chr2.4:76242819-76242838 | MS.gene072067:intron | 20.0% |
| !! | TAGATTAATTAGCATATGTT+TGG | + | chr2.4:76245616-76245635 | MS.gene072067:CDS | 20.0% |
| !! | TGTAATGAAATAAAAATCCA+TGG | - | chr2.4:76243651-76243670 | None:intergenic | 20.0% |
| !!! | AAACAAAATAGTGATTTGTT+AGG | - | chr2.4:76243436-76243455 | None:intergenic | 20.0% |
| !!! | AACAAAATAGTGATTTGTTA+GGG | - | chr2.4:76243435-76243454 | None:intergenic | 20.0% |
| !!! | AATTGATAAATTTTAGATGC+AGG | + | chr2.4:76244245-76244264 | MS.gene072067:intron | 20.0% |
| !!! | AGATTCTATTTTCTTATTTG+AGG | + | chr2.4:76242718-76242737 | MS.gene072067:intron | 20.0% |
| !!! | ATTCACTAACATTCATTTTA+AGG | - | chr2.4:76244884-76244903 | None:intergenic | 20.0% |
| !!! | GATTCTATTTTCTTATTTGA+GGG | + | chr2.4:76242719-76242738 | MS.gene072067:intron | 20.0% |
| !!! | GATTGGTATTCTTTAATTTA+AGG | + | chr2.4:76245029-76245048 | MS.gene072067:intron | 20.0% |
| !!! | GCTATTTCATAAATTTTAAG+AGG | - | chr2.4:76244852-76244871 | None:intergenic | 20.0% |
| !!! | GTATTTTTAGTTCAATTTAC+CGG | + | chr2.4:76244756-76244775 | MS.gene072067:intron | 20.0% |
| !!! | TCAGAATTTTAAGAAATCAT+TGG | - | chr2.4:76242963-76242982 | None:intergenic | 20.0% |
| !!! | TTCACTAACATTCATTTTAA+GGG | - | chr2.4:76244883-76244902 | None:intergenic | 20.0% |
| !!! | TTCTTTATATTTGTTTGCTA+AGG | - | chr2.4:76244487-76244506 | None:intergenic | 20.0% |
| !!! | TTTTTCATTATATGTGGATA+GGG | + | chr2.4:76244196-76244215 | MS.gene072067:intron | 20.0% |
| !!! | TTTTTTCATTATATGTGGAT+AGG | + | chr2.4:76244195-76244214 | MS.gene072067:intron | 20.0% |
| ! | AAACTTTCATGCAAAACTAT+TGG | + | chr2.4:76243222-76243241 | MS.gene072067:CDS | 25.0% |
| ! | AAATTGTAAAAGTGGAACAA+TGG | - | chr2.4:76245088-76245107 | None:intergenic | 25.0% |
| ! | AAGAAATCAAAATGTGTATG+AGG | + | chr2.4:76244304-76244323 | MS.gene072067:CDS | 25.0% |
| ! | AATAAAAGGAGATAGGTAAT+AGG | - | chr2.4:76244177-76244196 | None:intergenic | 25.0% |
| ! | ACTAAAAATACATAGGATGT+AGG | - | chr2.4:76244747-76244766 | None:intergenic | 25.0% |
| ! | ACTATTAGCATTTAACGAAA+GGG | - | chr2.4:76245346-76245365 | None:intergenic | 25.0% |
| ! | AGAAAAGAAAATACCTATAG+AGG | - | chr2.4:76242747-76242766 | None:intergenic | 25.0% |
| ! | AGAAAATCACCAAGAAAAAT+CGG | - | chr2.4:76244022-76244041 | None:intergenic | 25.0% |
| ! | AGTGAAAATTGAAGAACAAT+TGG | + | chr2.4:76242792-76242811 | MS.gene072067:intron | 25.0% |
| ! | ATCAAATATTTCTTTCTCCT+TGG | + | chr2.4:76242929-76242948 | MS.gene072067:intron | 25.0% |
| ! | ATTATTATTGTGGAATGGTT+TGG | + | chr2.4:76244327-76244346 | MS.gene072067:intron | 25.0% |
| ! | CAAAACCTTCAAAAAAATTG+TGG | - | chr2.4:76244931-76244950 | None:intergenic | 25.0% |
| ! | CTATGAGTTTCACAAAATTA+CGG | + | chr2.4:76243877-76243896 | MS.gene072067:intron | 25.0% |
| ! | GAGAACCTATTCAAATAAAT+GGG | + | chr2.4:76244968-76244987 | MS.gene072067:intron | 25.0% |
| ! | GTCATTAAACATATAGTGAT+AGG | + | chr2.4:76243820-76243839 | MS.gene072067:intron | 25.0% |
| ! | TCCAAGTTCAAAAAATCATA+AGG | - | chr2.4:76244615-76244634 | None:intergenic | 25.0% |
| ! | TTAACTAAAACTCTAACAGT+TGG | + | chr2.4:76243479-76243498 | MS.gene072067:intron | 25.0% |
| ! | TTGATGTTTACTAAACTGAT+TGG | + | chr2.4:76245012-76245031 | MS.gene072067:intron | 25.0% |
| !! | AAAAATTGTGGTGCTAAATT+TGG | - | chr2.4:76244919-76244938 | None:intergenic | 25.0% |
| !! | AATCTTTCTTTGATGTTTTG+TGG | - | chr2.4:76245552-76245571 | None:intergenic | 25.0% |
| !! | TTTTGTGTTTATCTTAAGCA+TGG | + | chr2.4:76244946-76244965 | MS.gene072067:intron | 25.0% |
| !!! | ATGATTTTTTGAACTTGGAA+TGG | + | chr2.4:76244616-76244635 | MS.gene072067:intron | 25.0% |
| !!! | TCCTTATGATTTTTTGAACT+TGG | + | chr2.4:76244611-76244630 | MS.gene072067:intron | 25.0% |
| AAAATTACAGAACCTTGTGA+TGG | - | chr2.4:76243124-76243143 | None:intergenic | 30.0% | |
| AAATTACAGAACCTTGTGAT+GGG | - | chr2.4:76243123-76243142 | None:intergenic | 30.0% | |
| ATACACAGCAAGACTTATTT+GGG | + | chr2.4:76242679-76242698 | MS.gene072067:intron | 30.0% | |
| CAAAATATATGCAACTCCTT+TGG | + | chr2.4:76245115-76245134 | MS.gene072067:intron | 30.0% | |
| CTATTAGCATTTAACGAAAG+GGG | - | chr2.4:76245345-76245364 | None:intergenic | 30.0% | |
| CTTTCTCCATTGAAATAAAC+TGG | - | chr2.4:76244689-76244708 | None:intergenic | 30.0% | |
| GACTATTAGCATTTAACGAA+AGG | - | chr2.4:76245347-76245366 | None:intergenic | 30.0% | |
| GGAGAACCTATTCAAATAAA+TGG | + | chr2.4:76244967-76244986 | MS.gene072067:intron | 30.0% | |
| GGTTCTCAAAATTGTAAAAG+TGG | - | chr2.4:76245096-76245115 | None:intergenic | 30.0% | |
| GTCTACCCATTTATTTGAAT+AGG | - | chr2.4:76244976-76244995 | None:intergenic | 30.0% | |
| GTGTATGAGGATTATTATTG+TGG | + | chr2.4:76244317-76244336 | MS.gene072067:CDS | 30.0% | |
| TCTTGTAAATTATCATGTCG+TGG | + | chr2.4:76245184-76245203 | MS.gene072067:intron | 30.0% | |
| TGAGGATTATTATTGTGGAA+TGG | + | chr2.4:76244322-76244341 | MS.gene072067:CDS | 30.0% | |
| ! | AATCATTGGTTGAAAATCCA+AGG | - | chr2.4:76242949-76242968 | None:intergenic | 30.0% |
| ! | ATTAATCTAGCTTCAAGCAA+TGG | - | chr2.4:76245605-76245624 | None:intergenic | 30.0% |
| ! | CAAAGGAGTTGCATATATTT+TGG | - | chr2.4:76245117-76245136 | None:intergenic | 30.0% |
| ! | TGAATCAGGTTTGAAATGAA+TGG | + | chr2.4:76243321-76243340 | MS.gene072067:intron | 30.0% |
| !! | TTGTAGTTGGCTTGTATAAT+TGG | - | chr2.4:76243779-76243798 | None:intergenic | 30.0% |
| !!! | AGAATTTTTTGTACACAGCA+TGG | - | chr2.4:76245491-76245510 | None:intergenic | 30.0% |
| !!! | TAGCACCACAATTTTTTTGA+AGG | + | chr2.4:76244923-76244942 | MS.gene072067:intron | 30.0% |
| AAATTCATCTTCTGCTCTAG+AGG | - | chr2.4:76242883-76242902 | None:intergenic | 35.0% | |
| AAATTCTCAAGTCCTGAGAA+AGG | + | chr2.4:76245504-76245523 | MS.gene072067:CDS | 35.0% | |
| AGAGAATCATGATGTTGACA+TGG | + | chr2.4:76244086-76244105 | MS.gene072067:CDS | 35.0% | |
| ATGCTCGTTCTATACTCAAT+AGG | + | chr2.4:76245254-76245273 | MS.gene072067:CDS | 35.0% | |
| ATGCTTTCATGTTTCTTGCA+GGG | + | chr2.4:76243010-76243029 | MS.gene072067:intron | 35.0% | |
| ATGTCAACATCATGATTCTC+TGG | - | chr2.4:76244087-76244106 | None:intergenic | 35.0% | |
| ATTTGCATAGATGGAGAACA+TGG | + | chr2.4:76245139-76245158 | MS.gene072067:intron | 35.0% | |
| CACATTGTGATTCTACCTAA+CGG | + | chr2.4:76243962-76243981 | MS.gene072067:intron | 35.0% | |
| CACTAACATCAGATCTCTTT+AGG | - | chr2.4:76244448-76244467 | None:intergenic | 35.0% | |
| CAGACACCAGTTTATTTCAA+TGG | + | chr2.4:76244680-76244699 | MS.gene072067:intron | 35.0% | |
| CATACACAGCAAGACTTATT+TGG | + | chr2.4:76242678-76242697 | MS.gene072067:intron | 35.0% | |
| CATCAAGTTCTTGGAGATAT+CGG | + | chr2.4:76243069-76243088 | MS.gene072067:CDS | 35.0% | |
| CTAAAGAGATCTGATGTTAG+TGG | + | chr2.4:76244446-76244465 | MS.gene072067:intron | 35.0% | |
| CTATGTATCTTGTGGAAATC+AGG | - | chr2.4:76245686-76245705 | None:intergenic | 35.0% | |
| CTCTTTAGGTATACTAGTCA+AGG | - | chr2.4:76244434-76244453 | None:intergenic | 35.0% | |
| GAAGAACAATTGGCTATGTT+AGG | + | chr2.4:76242802-76242821 | MS.gene072067:intron | 35.0% | |
| GAATCAAGTTTCAGACTACA+TGG | + | chr2.4:76244272-76244291 | MS.gene072067:CDS | 35.0% | |
| TACTCAATAGGGTTCCATAT+TGG | + | chr2.4:76245266-76245285 | MS.gene072067:CDS | 35.0% | |
| TATGCTTTCATGTTTCTTGC+AGG | + | chr2.4:76243009-76243028 | MS.gene072067:intron | 35.0% | |
| TCCATCTATGCAAATACCAA+AGG | - | chr2.4:76245134-76245153 | None:intergenic | 35.0% | |
| TCCTTTGGTATTTGCATAGA+TGG | + | chr2.4:76245130-76245149 | MS.gene072067:intron | 35.0% | |
| TCTGCAATTCAAGACGATAA+TGG | - | chr2.4:76244360-76244379 | None:intergenic | 35.0% | |
| TGAGTTTCACAAAATTACGG+TGG | + | chr2.4:76243880-76243899 | MS.gene072067:intron | 35.0% | |
| TGCAGATATTGAGTCCAATA+TGG | - | chr2.4:76245283-76245302 | None:intergenic | 35.0% | |
| TGCTCGTTCTATACTCAATA+GGG | + | chr2.4:76245255-76245274 | MS.gene072067:CDS | 35.0% | |
| TTGCAAGCAACAAATAAGCT+TGG | - | chr2.4:76243202-76243221 | None:intergenic | 35.0% | |
| ! | ATTTTGCCAAAGCTACACTT+CGG | - | chr2.4:76243934-76243953 | None:intergenic | 35.0% |
| ! | CTTGTAGTACTTTTCTTGCA+GGG | + | chr2.4:76243162-76243181 | MS.gene072067:intron | 35.0% |
| ! | TCTTGTAGTACTTTTCTTGC+AGG | + | chr2.4:76243161-76243180 | MS.gene072067:intron | 35.0% |
| ! | TGAAAGCATACACAGTAACA+TGG | - | chr2.4:76242999-76243018 | None:intergenic | 35.0% |
| ! | TGAATCGAAAAAGAGAGTGT+AGG | + | chr2.4:76242643-76242662 | MS.gene072067:intron | 35.0% |
| !! | GTGTAGCTTTGGCAAAATTA+CGG | + | chr2.4:76243936-76243955 | MS.gene072067:intron | 35.0% |
| !!! | TTTTTTGAACTTGGAATGGC+AGG | + | chr2.4:76244620-76244639 | MS.gene072067:intron | 35.0% |
| AACCAAGGTTAGAAGAACCA+TGG | + | chr2.4:76243631-76243650 | MS.gene072067:intron | 40.0% | |
| AAGCTGCACTATGTATCTTG+TGG | - | chr2.4:76245694-76245713 | None:intergenic | 40.0% | |
| AAGGATCAGACTGTTGACAT+GGG | + | chr2.4:76243699-76243718 | MS.gene072067:CDS | 40.0% | |
| AGAGCAATATGACCTTTCTC+AGG | - | chr2.4:76245519-76245538 | None:intergenic | 40.0% | |
| ATCACCAAGAAAAATCGGTC+TGG | - | chr2.4:76244017-76244036 | None:intergenic | 40.0% | |
| ATCCATGGTTCTTCTAACCT+TGG | - | chr2.4:76243636-76243655 | None:intergenic | 40.0% | |
| ATGTCAACAGTCTGATCCTT+GGG | - | chr2.4:76243699-76243718 | None:intergenic | 40.0% | |
| CAATATCTGCAGAACCTATC+TGG | + | chr2.4:76245292-76245311 | MS.gene072067:CDS | 40.0% | |
| CACTGCATCAATCATTGAAG+GGG | - | chr2.4:76245219-76245238 | None:intergenic | 40.0% | |
| CACTTCTAATTCTGGTACCA+GGG | - | chr2.4:76243364-76243383 | None:intergenic | 40.0% | |
| CGATATCTCCAAGAACTTGA+TGG | - | chr2.4:76243071-76243090 | None:intergenic | 40.0% | |
| CTATTGTGCATGACAAAGAG+AGG | + | chr2.4:76244784-76244803 | MS.gene072067:intron | 40.0% | |
| GAGATATCGGTAATCTTGAG+GGG | + | chr2.4:76243082-76243101 | MS.gene072067:CDS | 40.0% | |
| GATTCTTTAGTACAACGCCT+TGG | - | chr2.4:76243401-76243420 | None:intergenic | 40.0% | |
| GCACTGCATCAATCATTGAA+GGG | - | chr2.4:76245220-76245239 | None:intergenic | 40.0% | |
| GCAGCAAGCAATACTATATC+TGG | + | chr2.4:76244538-76244557 | MS.gene072067:intron | 40.0% | |
| GGAGATATCGGTAATCTTGA+GGG | + | chr2.4:76243081-76243100 | MS.gene072067:CDS | 40.0% | |
| GTAGGTTTAGACTAACCGTT+AGG | - | chr2.4:76243980-76243999 | None:intergenic | 40.0% | |
| GTCATGCACAATAGATGATC+CGG | - | chr2.4:76244778-76244797 | None:intergenic | 40.0% | |
| TAGGTATACTAGTCAAGGAG+AGG | - | chr2.4:76244429-76244448 | None:intergenic | 40.0% | |
| TATGATGCGTTTCTGTTAGC+CGG | + | chr2.4:76244046-76244065 | MS.gene072067:intron | 40.0% | |
| TCACCAAGAAAAATCGGTCT+GGG | - | chr2.4:76244016-76244035 | None:intergenic | 40.0% | |
| TCATGCTGTAGAGTTTGGTT+TGG | - | chr2.4:76245750-76245769 | None:intergenic | 40.0% | |
| TGCACTGCATCAATCATTGA+AGG | - | chr2.4:76245221-76245240 | None:intergenic | 40.0% | |
| TGGAGATATCGGTAATCTTG+AGG | + | chr2.4:76243080-76243099 | MS.gene072067:CDS | 40.0% | |
| TTAGCTGGCACTTCTAATTC+TGG | - | chr2.4:76243372-76243391 | None:intergenic | 40.0% | |
| TTATTTGAGGGCTCCTCTAT+AGG | + | chr2.4:76242731-76242750 | MS.gene072067:intron | 40.0% | |
| TTTCTTGCAGGGAGAGATAA+GGG | + | chr2.4:76243021-76243040 | MS.gene072067:intron | 40.0% | |
| ! | ACCACATTGCGTTTTGTAGT+TGG | - | chr2.4:76243792-76243811 | None:intergenic | 40.0% |
| ! | ATCGAAAAAGAGAGTGTAGG+AGG | + | chr2.4:76242646-76242665 | MS.gene072067:intron | 40.0% |
| ! | GTGTATTTTCACCAACTGTG+TGG | - | chr2.4:76245445-76245464 | None:intergenic | 40.0% |
| !! | AAAAGCACCAAAATGTGAGG+TGG | - | chr2.4:76245661-76245680 | None:intergenic | 40.0% |
| !! | GTGAAAAGCACCAAAATGTG+AGG | - | chr2.4:76245664-76245683 | None:intergenic | 40.0% |
| ACCAAGAAAAATCGGTCTGG+GGG | - | chr2.4:76244014-76244033 | None:intergenic | 45.0% | |
| ACGCCTTGGTCATAATTAGC+TGG | - | chr2.4:76243387-76243406 | None:intergenic | 45.0% | |
| AGATTTCACGACCCATCACA+AGG | + | chr2.4:76243109-76243128 | MS.gene072067:CDS | 45.0% | |
| ATCGTCTCAACTCTCAACCA+AGG | + | chr2.4:76243616-76243635 | MS.gene072067:intron | 45.0% | |
| CAAGACCAAGTTCTGCTAGA+TGG | - | chr2.4:76245169-76245188 | None:intergenic | 45.0% | |
| CAAGGATCAGACTGTTGACA+TGG | + | chr2.4:76243698-76243717 | MS.gene072067:CDS | 45.0% | |
| CACCAAGAAAAATCGGTCTG+GGG | - | chr2.4:76244015-76244034 | None:intergenic | 45.0% | |
| CATGTCAACAGTCTGATCCT+TGG | - | chr2.4:76243700-76243719 | None:intergenic | 45.0% | |
| CTGGCTCAAATGTCAAGATC+CGG | - | chr2.4:76244068-76244087 | None:intergenic | 45.0% | |
| GAGAGATAAGGGAAAGCAGA+AGG | + | chr2.4:76243032-76243051 | MS.gene072067:CDS | 45.0% | |
| GCACTTCTAATTCTGGTACC+AGG | - | chr2.4:76243365-76243384 | None:intergenic | 45.0% | |
| GCATTCCATCTAGCAGAACT+TGG | + | chr2.4:76245161-76245180 | MS.gene072067:intron | 45.0% | |
| GCCAACTACAAAACGCAATG+TGG | + | chr2.4:76243788-76243807 | MS.gene072067:intron | 45.0% | |
| GTGCCAGCTAATTATGACCA+AGG | + | chr2.4:76243381-76243400 | MS.gene072067:CDS | 45.0% | |
| GTTCTTTGCAGTAGCCAGAT+AGG | - | chr2.4:76245309-76245328 | None:intergenic | 45.0% | |
| GTTTCTTGCAGGGAGAGATA+AGG | + | chr2.4:76243020-76243039 | MS.gene072067:intron | 45.0% | |
| TCGTCTTGAATTGCAGACAG+AGG | + | chr2.4:76244363-76244382 | MS.gene072067:intron | 45.0% | |
| !! | TGCTGTAGAGTTTGGTTTGG+CGG | - | chr2.4:76245747-76245766 | None:intergenic | 45.0% |
| AAAATCGGTCTGGGGGATAG+AGG | - | chr2.4:76244007-76244026 | None:intergenic | 50.0% | |
| AAGCAGAAGGCAGAAAGAGG+TGG | + | chr2.4:76243045-76243064 | MS.gene072067:CDS | 50.0% | |
| AGAGGTGGCCATCAAGTTCT+TGG | + | chr2.4:76243060-76243079 | MS.gene072067:CDS | 50.0% | |
| AGCACCAAAATGTGAGGTGG+TGG | - | chr2.4:76245658-76245677 | None:intergenic | 50.0% | |
| GGAAAGCAGAAGGCAGAAAG+AGG | + | chr2.4:76243042-76243061 | MS.gene072067:CDS | 50.0% | |
| TTGCCAAAGCTACACTTCGG+AGG | - | chr2.4:76243931-76243950 | None:intergenic | 50.0% | |
| ! | TTCGCCACCACCTCACATTT+TGG | + | chr2.4:76245651-76245670 | MS.gene072067:CDS | 50.0% |
| !! | GTAGAGTTTGGTTTGGCGGT+TGG | - | chr2.4:76245743-76245762 | None:intergenic | 50.0% |
| !! | TCCCCCAGACCGATTTTTCT+TGG | + | chr2.4:76244010-76244029 | MS.gene072067:intron | 50.0% |
| ACCAGGGTCTGCAAACGAAG+AGG | - | chr2.4:76243348-76243367 | None:intergenic | 55.0% | |
| AGAACACTCACTGCTGCAGC+TGG | - | chr2.4:76243256-76243275 | None:intergenic | 55.0% | |
| CAGATACTGCGCCACACAGT+TGG | + | chr2.4:76245431-76245450 | MS.gene072067:intron | 55.0% | |
| CCAACTCTTGTTCGAGCCCA+AGG | + | chr2.4:76243680-76243699 | MS.gene072067:CDS | 55.0% | |
| CCTTGGGCTCGAACAAGAGT+TGG | - | chr2.4:76243683-76243702 | None:intergenic | 55.0% | |
| GCTCCTCCGAAGTGTAGCTT+TGG | + | chr2.4:76243925-76243944 | MS.gene072067:intron | 55.0% | |
| TCCTCTTCGTTTGCAGACCC+TGG | + | chr2.4:76243344-76243363 | MS.gene072067:intron | 55.0% | |
| ! | CTGGGGGATAGAGGAAGTGT+AGG | - | chr2.4:76243998-76244017 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 76242636 | 76245769 | 76242636 | ID=MS.gene072067 |
| chr2.4 | mRNA | 76242636 | 76245769 | 76242636 | ID=MS.gene072067.t1;Parent=MS.gene072067 |
| chr2.4 | exon | 76242636 | 76242660 | 76242636 | ID=MS.gene072067.t1.exon1;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76242636 | 76242660 | 76242636 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76243031 | 76243130 | 76243031 | ID=MS.gene072067.t1.exon2;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76243031 | 76243130 | 76243031 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76243204 | 76243264 | 76243204 | ID=MS.gene072067.t1.exon3;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76243204 | 76243264 | 76243204 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76243360 | 76243422 | 76243360 | ID=MS.gene072067.t1.exon4;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76243360 | 76243422 | 76243360 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76243672 | 76243769 | 76243672 | ID=MS.gene072067.t1.exon5;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76243672 | 76243769 | 76243672 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76244065 | 76244170 | 76244065 | ID=MS.gene072067.t1.exon6;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76244065 | 76244170 | 76244065 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76244261 | 76244343 | 76244261 | ID=MS.gene072067.t1.exon7;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76244261 | 76244343 | 76244261 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76245237 | 76245335 | 76245237 | ID=MS.gene072067.t1.exon8;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76245237 | 76245335 | 76245237 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76245434 | 76245525 | 76245434 | ID=MS.gene072067.t1.exon9;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76245434 | 76245525 | 76245434 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| chr2.4 | exon | 76245615 | 76245769 | 76245615 | ID=MS.gene072067.t1.exon10;Parent=MS.gene072067.t1 |
| chr2.4 | CDS | 76245615 | 76245769 | 76245615 | ID=cds.MS.gene072067.t1;Parent=MS.gene072067.t1 |
| Gene Sequence |
| Protein sequence |
