Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50493.t1 | XP_013449750.1 | 98 | 307 | 5 | 1 | 1 | 306 | 1 | 307 | 2.10E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50493.t1 | A0A072U3Q0 | 98.0 | 307 | 5 | 1 | 1 | 306 | 1 | 307 | 1.5e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene50493 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene50493 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene049272 | MS.gene50493 | 0.802879 | 4.55E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene50493 | 0.802663 | 5.04E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene50493 | 0.801025 | 1.09E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene50493 | 0.803152 | 3.99E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene50493 | 0.847049 | 1.48E-59 | -1.69E-46 |
| MS.gene050273 | MS.gene50493 | 0.816175 | 6.33E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene50493 | 0.801011 | 1.10E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene50493 | 0.830456 | 2.91E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene50493 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene50493 | 0.839823 | 1.26E-57 | -1.69E-46 |
| MS.gene051719 | MS.gene50493 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene50493 | 0.808708 | 2.71E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene50493 | 0.819297 | 1.25E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene50493 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene50493 | 0.83502 | 2.14E-56 | -1.69E-46 |
| MS.gene052561 | MS.gene50493 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene50493 | 0.860933 | 1.46E-63 | -1.69E-46 |
| MS.gene052584 | MS.gene50493 | 0.847848 | 8.92E-60 | -1.69E-46 |
| MS.gene052586 | MS.gene50493 | 0.820358 | 7.16E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene50493 | 0.8062 | 9.23E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene50493 | 0.823319 | 1.48E-53 | -1.69E-46 |
| MS.gene05365 | MS.gene50493 | 0.825149 | 5.49E-54 | -1.69E-46 |
| MS.gene053883 | MS.gene50493 | 0.828615 | 8.15E-55 | -1.69E-46 |
| MS.gene053998 | MS.gene50493 | 0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene50493 | 0.820453 | 6.81E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene50493 | 0.809884 | 1.52E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene50493 | 0.825762 | 3.93E-54 | -1.69E-46 |
| MS.gene054291 | MS.gene50493 | -0.816353 | 5.78E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene50493 | 0.806369 | 8.51E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene50493 | 0.83227 | 1.04E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene50493 | 0.820804 | 5.65E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene50493 | 0.803064 | 4.17E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene50493 | 0.816078 | 6.65E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene50493 | 0.804579 | 2.02E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene50493 | 0.808112 | 3.64E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene50493 | 0.808999 | 2.35E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene50493 | 0.831915 | 1.27E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene50493 | 0.810906 | 9.13E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene50493 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene50493 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene50493 | 0.807098 | 5.97E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene50493 | 0.8006 | 1.34E-48 | -1.69E-46 |
| MS.gene056162 | MS.gene50493 | 0.808192 | 3.50E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene50493 | 0.854136 | 1.50E-61 | -1.69E-46 |
| MS.gene056215 | MS.gene50493 | 0.807082 | 6.01E-50 | -1.69E-46 |
| MS.gene057314 | MS.gene50493 | 0.825629 | 4.22E-54 | -1.69E-46 |
| MS.gene057414 | MS.gene50493 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene50493 | 0.809612 | 1.74E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene50493 | 0.832861 | 7.42E-56 | -1.69E-46 |
| MS.gene057921 | MS.gene50493 | 0.801782 | 7.65E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene50493 | 0.812311 | 4.52E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene50493 | 0.818948 | 1.50E-52 | -1.69E-46 |
| MS.gene058294 | MS.gene50493 | 0.834531 | 2.84E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene50493 | 0.814093 | 1.84E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene50493 | 0.826219 | 3.06E-54 | -1.69E-46 |
| MS.gene059458 | MS.gene50493 | 0.805878 | 1.08E-49 | -1.69E-46 |
| MS.gene059459 | MS.gene50493 | 0.811721 | 6.08E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene50493 | 0.822202 | 2.69E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene50493 | 0.801589 | 8.38E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene50493 | 0.835692 | 1.45E-56 | -1.69E-46 |
| MS.gene059625 | MS.gene50493 | 0.847009 | 1.52E-59 | -1.69E-46 |
| MS.gene060011 | MS.gene50493 | 0.809233 | 2.09E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene50493 | 0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene50493 | 0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene50493 | 0.847135 | 1.40E-59 | -1.69E-46 |
| MS.gene060553 | MS.gene50493 | 0.813374 | 2.64E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene50493 | -0.831011 | 2.13E-55 | -1.69E-46 |
| MS.gene060905 | MS.gene50493 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene060919 | MS.gene50493 | 0.828756 | 7.53E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50493.t1 | MTR_7g095100 | 98.046 | 307 | 5 | 1 | 1 | 306 | 1 | 307 | 0.0 | 613 |
| MS.gene50493.t1 | MTR_1g081260 | 64.610 | 308 | 102 | 3 | 1 | 306 | 1 | 303 | 9.51e-144 | 407 |
| MS.gene50493.t1 | MTR_7g114790 | 62.581 | 310 | 106 | 4 | 1 | 305 | 1 | 305 | 3.60e-139 | 395 |
| MS.gene50493.t1 | MTR_5g069570 | 40.351 | 285 | 153 | 7 | 30 | 306 | 34 | 309 | 1.61e-64 | 206 |
| MS.gene50493.t1 | MTR_3g076610 | 36.396 | 283 | 151 | 5 | 5 | 266 | 8 | 282 | 1.19e-60 | 196 |
| MS.gene50493.t1 | MTR_4g104760 | 38.722 | 266 | 144 | 5 | 5 | 258 | 8 | 266 | 2.30e-60 | 195 |
| MS.gene50493.t1 | MTR_4g055230 | 37.152 | 323 | 165 | 11 | 1 | 304 | 1 | 304 | 1.25e-57 | 187 |
| MS.gene50493.t1 | MTR_3g082430 | 39.241 | 237 | 134 | 5 | 27 | 258 | 13 | 244 | 7.75e-55 | 180 |
| MS.gene50493.t1 | MTR_7g103900 | 36.201 | 279 | 153 | 8 | 1 | 259 | 1 | 274 | 5.77e-52 | 173 |
| MS.gene50493.t1 | MTR_2g084965 | 38.686 | 274 | 142 | 8 | 6 | 259 | 8 | 275 | 4.87e-49 | 166 |
| MS.gene50493.t1 | MTR_3g106250 | 35.556 | 270 | 144 | 8 | 4 | 258 | 6 | 260 | 6.65e-49 | 166 |
| MS.gene50493.t1 | MTR_5g096570 | 33.333 | 279 | 176 | 5 | 29 | 304 | 1189 | 1460 | 2.87e-48 | 173 |
| MS.gene50493.t1 | MTR_1g013100 | 29.706 | 340 | 178 | 14 | 4 | 304 | 8 | 325 | 1.15e-37 | 136 |
| MS.gene50493.t1 | MTR_7g103900 | 32.479 | 234 | 136 | 7 | 1 | 217 | 1 | 229 | 3.79e-32 | 119 |
| MS.gene50493.t1 | MTR_8g069535 | 63.415 | 82 | 29 | 1 | 8 | 89 | 9 | 89 | 1.26e-24 | 99.8 |
| MS.gene50493.t1 | MTR_8g069535 | 50.769 | 65 | 31 | 1 | 175 | 239 | 84 | 147 | 2.79e-12 | 65.9 |
| MS.gene50493.t1 | MTR_5g069550 | 32.000 | 175 | 99 | 3 | 10 | 182 | 14 | 170 | 4.41e-22 | 91.7 |
| MS.gene50493.t1 | MTR_0716s0040 | 39.241 | 79 | 26 | 1 | 200 | 278 | 15 | 71 | 1.93e-13 | 64.7 |
| MS.gene50493.t1 | MTR_0716s0020 | 58.824 | 51 | 17 | 1 | 56 | 106 | 3 | 49 | 3.40e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50493.t1 | AT5G28150 | 60.261 | 307 | 103 | 6 | 1 | 306 | 1 | 289 | 2.40e-120 | 347 |
| MS.gene50493.t1 | AT3G04860 | 57.143 | 308 | 111 | 5 | 1 | 306 | 1 | 289 | 7.90e-120 | 346 |
| MS.gene50493.t1 | AT2G04220 | 42.169 | 249 | 134 | 5 | 14 | 258 | 12 | 254 | 1.82e-63 | 203 |
| MS.gene50493.t1 | AT4G12690 | 41.129 | 248 | 135 | 5 | 15 | 258 | 9 | 249 | 3.88e-62 | 199 |
| MS.gene50493.t1 | AT4G12690 | 41.129 | 248 | 135 | 5 | 15 | 258 | 9 | 249 | 3.88e-62 | 199 |
| MS.gene50493.t1 | AT5G48270 | 37.805 | 328 | 160 | 12 | 5 | 306 | 13 | 322 | 4.29e-56 | 184 |
| MS.gene50493.t1 | AT2G27770 | 32.143 | 336 | 179 | 11 | 1 | 304 | 1 | 319 | 2.18e-48 | 164 |
| MS.gene50493.t1 | AT3G13229 | 34.188 | 234 | 138 | 8 | 33 | 255 | 8 | 236 | 2.21e-37 | 135 |
| MS.gene50493.t1 | AT5G11000 | 32.432 | 259 | 131 | 10 | 28 | 258 | 30 | 272 | 9.29e-35 | 130 |
| MS.gene50493.t1 | AT2G25200 | 25.138 | 362 | 184 | 12 | 6 | 304 | 16 | 353 | 1.99e-30 | 118 |
| MS.gene50493.t1 | AT2G36470 | 29.927 | 274 | 146 | 11 | 1 | 250 | 1 | 252 | 2.98e-24 | 100 |
Find 49 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATGCTAAATTTGGTTC+TGG | 0.191766 | 7.3:+16047888 | MS.gene50493:CDS |
| GAGAAAAGGGTGTAAGAATT+TGG | 0.248105 | 7.3:+16047827 | MS.gene50493:CDS |
| GATTTGAGTTATGCTAAATT+TGG | 0.254797 | 7.3:+16047882 | MS.gene50493:CDS |
| GATGTTCATAATTGGCTCTT+TGG | 0.260181 | 7.3:+16048290 | MS.gene50493:CDS |
| CATGTTTGATTACAGTTTCA+TGG | 0.295709 | 7.3:+16047706 | MS.gene50493:CDS |
| AAGGAGTTTCCATCTTGTTT+TGG | 0.305139 | 7.3:+16047576 | MS.gene50493:CDS |
| TAGTAAAGTTGTTATACTTT+GGG | 0.342797 | 7.3:+16047860 | MS.gene50493:CDS |
| GATTCTCAGTTGCAAGGTCT+TGG | 0.351714 | 7.3:+16048434 | MS.gene50493:CDS |
| CTAGTAAAGTTGTTATACTT+TGG | 0.351998 | 7.3:+16047859 | MS.gene50493:CDS |
| TCGCGGTAATCAAACTGTTT+TGG | 0.353773 | 7.3:+16048238 | MS.gene50493:CDS |
| TCTCAGCTGAAATACAAGTT+TGG | 0.362558 | 7.3:-16048343 | None:intergenic |
| TCCTCTTCAAGTAGCATAAG+AGG | 0.389142 | 7.3:+16047633 | MS.gene50493:CDS |
| TAATACCCCTCCAATGGTTC+TGG | 0.393388 | 7.3:-16047912 | None:intergenic |
| GTTATGCTAAATTTGGTTCT+GGG | 0.396684 | 7.3:+16047889 | MS.gene50493:CDS |
| ACATCCCAAAACACTTCAAC+TGG | 0.400830 | 7.3:-16048272 | None:intergenic |
| TAGTGTTGGAATTGATGAAT+TGG | 0.416664 | 7.3:+16047755 | MS.gene50493:CDS |
| CAATTCCAACACTAAGGCCT+TGG | 0.444766 | 7.3:-16047746 | None:intergenic |
| ATCTATCAATGTAATTTAAG+AGG | 0.448731 | 7.3:+16047678 | MS.gene50493:CDS |
| TTGGCTCTTTGGAAATGCTA+TGG | 0.452459 | 7.3:+16048301 | MS.gene50493:CDS |
| TTCTGGGCCAGAACCATTGG+AGG | 0.456488 | 7.3:+16047905 | MS.gene50493:CDS |
| AGTGTTGGAATTGATGAATT+GGG | 0.473318 | 7.3:+16047756 | MS.gene50493:CDS |
| GATACTGACAACAATGTTAG+TGG | 0.473769 | 7.3:+16048008 | MS.gene50493:CDS |
| GGGAAATAGTTGTTTATGCA+AGG | 0.478641 | 7.3:+16047776 | MS.gene50493:CDS |
| TTCATGGACAAAGAATTTGA+TGG | 0.485530 | 7.3:+16047722 | MS.gene50493:CDS |
| TGGCTCTTTGGAAATGCTAT+GGG | 0.488711 | 7.3:+16048302 | MS.gene50493:CDS |
| ATTGAGTGTGATACACTTGT+TGG | 0.493306 | 7.3:+16048140 | MS.gene50493:CDS |
| TGGTTCTGGGCCAGAACCAT+TGG | 0.500620 | 7.3:+16047902 | MS.gene50493:CDS |
| ATGGGCCAAGGCCTTAGTGT+TGG | 0.505702 | 7.3:+16047741 | MS.gene50493:CDS |
| TCATGGACAAAGAATTTGAT+GGG | 0.518931 | 7.3:+16047723 | MS.gene50493:CDS |
| TCAGCTGAGAAATTGTGGTC+AGG | 0.522661 | 7.3:+16048356 | MS.gene50493:CDS |
| TGATAGCAAGATAGTGATGC+AGG | 0.524536 | 7.3:+16048193 | MS.gene50493:CDS |
| CAATTGAAGTGGAAGTTTCG+CGG | 0.531065 | 7.3:+16048221 | MS.gene50493:CDS |
| GTATTTCAGCTGAGAAATTG+TGG | 0.534611 | 7.3:+16048351 | MS.gene50493:CDS |
| CCCTCTTATGCTACTTGAAG+AGG | 0.536585 | 7.3:-16047634 | None:intergenic |
| ATTCATCAATTCCAACACTA+AGG | 0.542567 | 7.3:-16047752 | None:intergenic |
| TTTAGAGATTCTCAGTTGCA+AGG | 0.549501 | 7.3:+16048428 | MS.gene50493:CDS |
| CATAAGAGGGCCACAAAATG+TGG | 0.551229 | 7.3:+16047647 | MS.gene50493:CDS |
| TTGAGTGTGATACACTTGTT+GGG | 0.554324 | 7.3:+16048141 | MS.gene50493:CDS |
| TTTCTCTTTGAAAACAACCA+TGG | 0.574868 | 7.3:-16047810 | None:intergenic |
| ACAAAGAATTTGATGGGCCA+AGG | 0.577061 | 7.3:+16047729 | MS.gene50493:CDS |
| ACTAAATAATACCCCTCCAA+TGG | 0.586748 | 7.3:-16047918 | None:intergenic |
| TAAGCCCATGTCAAAAGAGA+AGG | 0.587808 | 7.3:-16048395 | None:intergenic |
| CAAGAAATGTTACTGTGCAA+AGG | 0.597482 | 7.3:+16048079 | MS.gene50493:CDS |
| TGCAGGTGAAGCAATTGAAG+TGG | 0.628266 | 7.3:+16048210 | MS.gene50493:CDS |
| CCTCTTCAAGTAGCATAAGA+GGG | 0.631812 | 7.3:+16047634 | MS.gene50493:CDS |
| GCAAGGTTGATATAAAGCCA+TGG | 0.638293 | 7.3:+16047793 | MS.gene50493:CDS |
| TCTGGGCCAGAACCATTGGA+GGG | 0.642416 | 7.3:+16047906 | MS.gene50493:CDS |
| TCAATTCTAATCACAAGACA+AGG | 0.678608 | 7.3:-16048173 | None:intergenic |
| CTGGGCCAGAACCATTGGAG+GGG | 0.724778 | 7.3:+16047907 | MS.gene50493:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATCAATGTAATTTAAG+AGG | + | chr7.3:16047678-16047697 | MS.gene50493:CDS | 20.0% |
| !! | TAGTAAAGTTGTTATACTTT+GGG | + | chr7.3:16047860-16047879 | MS.gene50493:CDS | 20.0% |
| ! | CTAGTAAAGTTGTTATACTT+TGG | + | chr7.3:16047859-16047878 | MS.gene50493:CDS | 25.0% |
| !! | GATTTGAGTTATGCTAAATT+TGG | + | chr7.3:16047882-16047901 | MS.gene50493:CDS | 25.0% |
| !!! | AAAAAGATGGTGTTACTTTT+AGG | + | chr7.3:16047954-16047973 | MS.gene50493:CDS | 25.0% |
| ATTCATCAATTCCAACACTA+AGG | - | chr7.3:16047755-16047774 | None:intergenic | 30.0% | |
| CATGTTTGATTACAGTTTCA+TGG | + | chr7.3:16047706-16047725 | MS.gene50493:CDS | 30.0% | |
| TCAATTCTAATCACAAGACA+AGG | - | chr7.3:16048176-16048195 | None:intergenic | 30.0% | |
| TCATGGACAAAGAATTTGAT+GGG | + | chr7.3:16047723-16047742 | MS.gene50493:CDS | 30.0% | |
| TGTTGTGTTCAACAAAAAGA+TGG | + | chr7.3:16047941-16047960 | MS.gene50493:CDS | 30.0% | |
| TTCATGGACAAAGAATTTGA+TGG | + | chr7.3:16047722-16047741 | MS.gene50493:CDS | 30.0% | |
| ! | AGTGTTGGAATTGATGAATT+GGG | + | chr7.3:16047756-16047775 | MS.gene50493:CDS | 30.0% |
| ! | AGTTATGCTAAATTTGGTTC+TGG | + | chr7.3:16047888-16047907 | MS.gene50493:CDS | 30.0% |
| ! | ATACAAGTAACCACATTTTG+TGG | - | chr7.3:16047660-16047679 | None:intergenic | 30.0% |
| ! | TAGTGTTGGAATTGATGAAT+TGG | + | chr7.3:16047755-16047774 | MS.gene50493:CDS | 30.0% |
| ! | TTTCTCTCATTTTGTATGCT+TGG | + | chr7.3:16048459-16048478 | MS.gene50493:CDS | 30.0% |
| ! | TTTCTCTTTGAAAACAACCA+TGG | - | chr7.3:16047813-16047832 | None:intergenic | 30.0% |
| !! | ACTTTTAGGAGATCTGAAAA+AGG | + | chr7.3:16047968-16047987 | MS.gene50493:CDS | 30.0% |
| !! | GGTTGTTTTCAAAGAGAAAA+GGG | + | chr7.3:16047814-16047833 | MS.gene50493:CDS | 30.0% |
| !! | GTTATGCTAAATTTGGTTCT+GGG | + | chr7.3:16047889-16047908 | MS.gene50493:CDS | 30.0% |
| !! | TGGTTGTTTTCAAAGAGAAA+AGG | + | chr7.3:16047813-16047832 | MS.gene50493:CDS | 30.0% |
| !! | TTTTCCAGTTGAAGTGTTTT+GGG | + | chr7.3:16048268-16048287 | MS.gene50493:CDS | 30.0% |
| !!! | TGTTTTGGGATGTTCATAAT+TGG | + | chr7.3:16048282-16048301 | MS.gene50493:CDS | 30.0% |
| ACTAAATAATACCCCTCCAA+TGG | - | chr7.3:16047921-16047940 | None:intergenic | 35.0% | |
| ATTGAGTGTGATACACTTGT+TGG | + | chr7.3:16048140-16048159 | MS.gene50493:CDS | 35.0% | |
| CAAGAAATGTTACTGTGCAA+AGG | + | chr7.3:16048079-16048098 | MS.gene50493:CDS | 35.0% | |
| GATACTGACAACAATGTTAG+TGG | + | chr7.3:16048008-16048027 | MS.gene50493:CDS | 35.0% | |
| GGGAAATAGTTGTTTATGCA+AGG | + | chr7.3:16047776-16047795 | MS.gene50493:CDS | 35.0% | |
| GTATTTCAGCTGAGAAATTG+TGG | + | chr7.3:16048351-16048370 | MS.gene50493:CDS | 35.0% | |
| TCTCAGCTGAAATACAAGTT+TGG | - | chr7.3:16048346-16048365 | None:intergenic | 35.0% | |
| TTGAGTGTGATACACTTGTT+GGG | + | chr7.3:16048141-16048160 | MS.gene50493:CDS | 35.0% | |
| TTTAGAGATTCTCAGTTGCA+AGG | + | chr7.3:16048428-16048447 | MS.gene50493:CDS | 35.0% | |
| ! | AAAGGCTCAATTTTGTGACA+AGG | + | chr7.3:16048097-16048116 | MS.gene50493:CDS | 35.0% |
| ! | AAGGCTCAATTTTGTGACAA+GGG | + | chr7.3:16048098-16048117 | MS.gene50493:CDS | 35.0% |
| ! | AGATCCTTCTCTTTTGACAT+GGG | + | chr7.3:16048391-16048410 | MS.gene50493:CDS | 35.0% |
| ! | CCATTTTCTCCAAAACAAGA+TGG | - | chr7.3:16047588-16047607 | None:intergenic | 35.0% |
| ! | GAGAAAAGGGTGTAAGAATT+TGG | + | chr7.3:16047827-16047846 | MS.gene50493:CDS | 35.0% |
| ! | GATGTTCATAATTGGCTCTT+TGG | + | chr7.3:16048290-16048309 | MS.gene50493:CDS | 35.0% |
| ! | GCAAAGAGAGAACACATTTT+TGG | + | chr7.3:16048056-16048075 | MS.gene50493:CDS | 35.0% |
| ! | TCAATTTTGTGACAAGGGTA+AGG | + | chr7.3:16048103-16048122 | MS.gene50493:CDS | 35.0% |
| !! | AAGGAGTTTCCATCTTGTTT+TGG | + | chr7.3:16047576-16047595 | MS.gene50493:CDS | 35.0% |
| !! | GTTTTCCAGTTGAAGTGTTT+TGG | + | chr7.3:16048267-16048286 | MS.gene50493:CDS | 35.0% |
| !! | TTTTGGAGAAAATGGTGTTC+AGG | + | chr7.3:16047593-16047612 | MS.gene50493:CDS | 35.0% |
| !!! | AATCAAACTGTTTTGGTGGA+TGG | + | chr7.3:16048245-16048264 | MS.gene50493:CDS | 35.0% |
| !!! | CCATCTTGTTTTGGAGAAAA+TGG | + | chr7.3:16047585-16047604 | MS.gene50493:CDS | 35.0% |
| ACATCCCAAAACACTTCAAC+TGG | - | chr7.3:16048275-16048294 | None:intergenic | 40.0% | |
| CAATTGAAGTGGAAGTTTCG+CGG | + | chr7.3:16048221-16048240 | MS.gene50493:CDS | 40.0% | |
| CCTCTTCAAGTAGCATAAGA+GGG | + | chr7.3:16047634-16047653 | MS.gene50493:CDS | 40.0% | |
| TAAGCCCATGTCAAAAGAGA+AGG | - | chr7.3:16048398-16048417 | None:intergenic | 40.0% | |
| TCCTCTTCAAGTAGCATAAG+AGG | + | chr7.3:16047633-16047652 | MS.gene50493:CDS | 40.0% | |
| TGATAGCAAGATAGTGATGC+AGG | + | chr7.3:16048193-16048212 | MS.gene50493:CDS | 40.0% | |
| ! | ACAAAGAATTTGATGGGCCA+AGG | + | chr7.3:16047729-16047748 | MS.gene50493:CDS | 40.0% |
| ! | CAGATCCTTCTCTTTTGACA+TGG | + | chr7.3:16048390-16048409 | MS.gene50493:CDS | 40.0% |
| ! | TCGCGGTAATCAAACTGTTT+TGG | + | chr7.3:16048238-16048257 | MS.gene50493:CDS | 40.0% |
| ! | TGGCTCTTTGGAAATGCTAT+GGG | + | chr7.3:16048302-16048321 | MS.gene50493:CDS | 40.0% |
| ! | TTGGCTCTTTGGAAATGCTA+TGG | + | chr7.3:16048301-16048320 | MS.gene50493:CDS | 40.0% |
| !! | CGGTAATCAAACTGTTTTGG+TGG | + | chr7.3:16048241-16048260 | MS.gene50493:CDS | 40.0% |
| !! | GCAAGGTTGATATAAAGCCA+TGG | + | chr7.3:16047793-16047812 | MS.gene50493:CDS | 40.0% |
| CAATTCCAACACTAAGGCCT+TGG | - | chr7.3:16047749-16047768 | None:intergenic | 45.0% | |
| CATAAGAGGGCCACAAAATG+TGG | + | chr7.3:16047647-16047666 | MS.gene50493:CDS | 45.0% | |
| GATTCTCAGTTGCAAGGTCT+TGG | + | chr7.3:16048434-16048453 | MS.gene50493:CDS | 45.0% | |
| TAATACCCCTCCAATGGTTC+TGG | - | chr7.3:16047915-16047934 | None:intergenic | 45.0% | |
| TCAGCTGAGAAATTGTGGTC+AGG | + | chr7.3:16048356-16048375 | MS.gene50493:CDS | 45.0% | |
| TGCAGGTGAAGCAATTGAAG+TGG | + | chr7.3:16048210-16048229 | MS.gene50493:CDS | 45.0% | |
| ! | CCCTCTTATGCTACTTGAAG+AGG | - | chr7.3:16047637-16047656 | None:intergenic | 45.0% |
| ATGGGCCAAGGCCTTAGTGT+TGG | + | chr7.3:16047741-16047760 | MS.gene50493:CDS | 55.0% | |
| TCTGGGCCAGAACCATTGGA+GGG | + | chr7.3:16047906-16047925 | MS.gene50493:CDS | 55.0% | |
| TTCTGGGCCAGAACCATTGG+AGG | + | chr7.3:16047905-16047924 | MS.gene50493:CDS | 55.0% | |
| !! | TGGTTCTGGGCCAGAACCAT+TGG | + | chr7.3:16047902-16047921 | MS.gene50493:CDS | 55.0% |
| CTGGGCCAGAACCATTGGAG+GGG | + | chr7.3:16047907-16047926 | MS.gene50493:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 16047573 | 16048493 | 16047573 | ID=MS.gene50493 |
| chr7.3 | mRNA | 16047573 | 16048493 | 16047573 | ID=MS.gene50493.t1;Parent=MS.gene50493 |
| chr7.3 | exon | 16047573 | 16048493 | 16047573 | ID=MS.gene50493.t1.exon1;Parent=MS.gene50493.t1 |
| chr7.3 | CDS | 16047573 | 16048493 | 16047573 | ID=cds.MS.gene50493.t1;Parent=MS.gene50493.t1 |
| Gene Sequence |
| Protein sequence |
