AlfalfaGEDB | MS.gene06269

M. sativa cultivar XinJiangDaYe / MS.gene06269

KEGG: K09571
GO: GO:0003674 GO:0003755 GO:0003824 GO:0016853 GO:0016859 GO:0140096
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06269.t1	AFK35673.1	75.4	61	3	1	124	172	32	92	1.20E-13	87

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06269.t1	Q43207	67.2	61	8	1	124	172	34	94	8.6e-13	75.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06269.t1	G7LF61	75.4	61	3	1	124	172	32	92	8.6e-14	87.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene06269	0.820877	5.44E-53	-1.69E-46
MS.gene049203	MS.gene06269	0.801889	7.28E-49	-1.69E-46
MS.gene049254	MS.gene06269	0.881043	3.33E-70	-1.69E-46
MS.gene049262	MS.gene06269	0.806155	9.44E-50	-1.69E-46
MS.gene049272	MS.gene06269	0.828355	9.41E-55	-1.69E-46
MS.gene049343	MS.gene06269	0.800883	1.17E-48	-1.69E-46
MS.gene049404	MS.gene06269	0.825722	4.01E-54	-1.69E-46
MS.gene049435	MS.gene06269	0.837184	6.04E-57	-1.69E-46
MS.gene049452	MS.gene06269	0.804912	1.72E-49	-1.69E-46
MS.gene049501	MS.gene06269	0.804613	1.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06269.t1	MTR_8g432580	86.667	75	10	0	18	92	52	126	1.32e-23	92.8
MS.gene06269.t1	MTR_4g074930	87.838	74	8	1	14	87	28	100	6.12e-23	97.1
MS.gene06269.t1	MTR_4g074930	87.838	74	8	1	14	87	28	100	6.52e-23	96.7
MS.gene06269.t1	MTR_4g074930	87.838	74	8	1	14	87	28	100	7.16e-23	96.7
MS.gene06269.t1	MTR_4g074930	87.838	74	8	1	14	87	28	100	7.58e-23	96.7
MS.gene06269.t1	MTR_8g080980	69.492	59	6	1	126	172	32	90	3.97e-17	80.1
MS.gene06269.t1	MTR_8g012340	90.909	33	3	0	140	172	60	92	2.71e-13	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06269.t1	AT5G48570	67.797	59	7	1	127	173	42	100	2.14e-16	77.8
MS.gene06269.t1	AT3G25230	63.636	66	11	2	119	172	27	91	1.90e-15	75.1
MS.gene06269.t1	AT3G25230	63.636	66	11	2	119	172	27	91	2.00e-15	75.1

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Find 55 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCAAGGGGTAGAAG+AGG	0.598623	3.1:+78385277	MS.gene06269:CDS
AAGAAGAAGCTTCTCAAAGA+AGG	0.467998	3.1:+78386154	MS.gene06269:CDS
AAGCTTCTCAAAGAAGGTGA+AGG	0.613170	3.1:+78386160	MS.gene06269:CDS
AATAATAATAGATAGGCAGA+TGG	0.568838	3.1:-78386533	None:intergenic
AATGAAATTAAAAGCATGGC+AGG	0.519602	3.1:+78386885	MS.gene06269:CDS
AATTGGATTATCGCCGGCAC+AGG	0.517693	3.1:-78386088	None:intergenic
ACTACTTTCAATTTCACTCT+TGG	0.361943	3.1:+78386342	MS.gene06269:CDS
AGAGGTTGCCGCCAAGCAAA+AGG	0.479123	3.1:+78385295	MS.gene06269:CDS
AGAGTCAGATTCCTCTGAAG+TGG	0.548311	3.1:-78385580	None:intergenic
AGTGAGTGCAAAGAAGCAAG+GGG	0.679652	3.1:+78385268	MS.gene06269:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAACGAAGAAAGAACAT+AGG	-	chr3.1:78386212-78386231	None:intergenic	30.0%
ACTACTTTCAATTTCACTCT+TGG	+	chr3.1:78386342-78386361	MS.gene06269:CDS	30.0%
CCCTATTATGAGGAAATTAA+AGG	+	chr3.1:78386722-78386741	MS.gene06269:intron	30.0%
GTAAAATTTCGATATTCCTG+TGG	+	chr3.1:78386035-78386054	MS.gene06269:intron	30.0%
TAGTTATCAGCAAATGAGAT+AGG	+	chr3.1:78386697-78386716	MS.gene06269:intron	30.0%
TCGGTGAAAAAAAAGGAAAT+CGG	+	chr3.1:78386118-78386137	MS.gene06269:CDS	30.0%
AAAAAGGAAATCGGAAAGCA+AGG	+	chr3.1:78386127-78386146	MS.gene06269:CDS	35.0%
AAGAAGAAGCTTCTCAAAGA+AGG	+	chr3.1:78386154-78386173	MS.gene06269:CDS	35.0%
AAGAAGACCCCAACTAAAAA+TGG	+	chr3.1:78385531-78385550	MS.gene06269:CDS	35.0%
AAGTGTGAGCAACAAAATAG+TGG	-	chr3.1:78385846-78385865	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	78385197	78386981	78385197	ID=MS.gene06269
chr3.1	mRNA	78385197	78386981	78385197	ID=MS.gene06269.t1;Parent=MS.gene06269
chr3.1	exon	78385197	78385382	78385197	ID=MS.gene06269.t1.exon1;Parent=MS.gene06269.t1
chr3.1	CDS	78385197	78385382	78385197	ID=cds.MS.gene06269.t1;Parent=MS.gene06269.t1
chr3.1	exon	78385501	78385632	78385501	ID=MS.gene06269.t1.exon2;Parent=MS.gene06269.t1
chr3.1	CDS	78385501	78385632	78385501	ID=cds.MS.gene06269.t1;Parent=MS.gene06269.t1
chr3.1	exon	78386073	78386181	78386073	ID=MS.gene06269.t1.exon3;Parent=MS.gene06269.t1
chr3.1	CDS	78386073	78386181	78386073	ID=cds.MS.gene06269.t1;Parent=MS.gene06269.t1
chr3.1	exon	78386283	78386369	78386283	ID=MS.gene06269.t1.exon4;Parent=MS.gene06269.t1
chr3.1	CDS	78386283	78386369	78386283	ID=cds.MS.gene06269.t1;Parent=MS.gene06269.t1
chr3.1	exon	78386509	78386564	78386509	ID=MS.gene06269.t1.exon5;Parent=MS.gene06269.t1
chr3.1	CDS	78386509	78386564	78386509	ID=cds.MS.gene06269.t1;Parent=MS.gene06269.t1
chr3.1	exon	78386868	78386981	78386868	ID=MS.gene06269.t1.exon6;Parent=MS.gene06269.t1
chr3.1	CDS	78386868	78386981	78386868	ID=cds.MS.gene06269.t1;Parent=MS.gene06269.t1

Gene Sequence

>MS.gene06269

ATGTCGGTTTTCTTATTGGGCTATTTTCACTTTGATATAGGCAAGAGGCAGGCTGAGGAAGAAGTCAAGGCAGTGAGTGCAAAGAAGCAAGGGGTAGAAGAGGTTGCCGCCAAGCAAAAGGCGTTGAAGGTAGTCAAGAAGGAGGAAAGTAGTTTGGAGGAATCCTCTGAGGAATCTGAGGATGAGGTATTATATTTCACTGCATATGCTTTAACGCATTTCGAATGGTACTGATCATGTATTTGTTTGTTATTGTTCTTGTTATGTTATTGATTTATGTCATGTTAATTTTACGTGGTCTCAGAAACCTGTTGCAAAAGCTCCTGCTCCTTCAAAGAAGACCCCAACTAAAAATGGGAATGTGAAGAAAGCCCAGCCAGAGACCACTTCAGAGGAATCTGACTCTGATGACAGCTCCTCTTCCGATGAGGAAGAAGTGAAAATGAGTGCAGCAAATTTAAAGAGACATCTTGAAGTTTATTGCATGATATTCCTTTGATTTATATCTTAAACATTAAAGAGACATCTTGAAGTTTATTGCATGATATTTCTTTGATTTATATCTTAAACACTGTGTTGGCAACCTATTGTTCTATTTTTTAAAACGCCTCTATAATTCACTTTTTAGAAGGAAAAAAAAAACGAACCACTATTTTGTTGCTCACACTTTATACGTATTACTCCTGTTTTGTTTCCAACCCAAAAATCCTTTCTCCTATTCTTGACCTATGGCTGGAAGAAACTCTCCTCTCCTATCACTGCCTAACTGGTAAACACTTCAACACATGTGTAATTATTTTTTTGTTGCGGTTTATATTTTTTTGTTGCGGTTTATACAGTAAAATTTCGATATTCCTGTGGTTGATTCCATGAAAGACGACTTCGACTTCGCCTGTGCCGGCGATAATCCAATTCTCAAGGTCGGTGAAAAAAAAGGAAATCGGAAAGCAAGGTTTGAAGAAGAAGCTTCTCAAAGAAGGTGAAGGTTGGGATGCTCATGATGTTGGCGATACCTATGTTCTTTCTTCGTTGATTTAGTTGAATTGAATTGAATTAAACTTTTACTGATTTTTTTTTTATGTGTAGTTCATTATACTGGAACGTTGCTTGATGGTATGAAGTTTGATTCTAGCAGAGATAGGGGAACTACTTTCAATTTCACTCTTGGACAAGGTTAGTGCATTGGAACGACGGTGTTTTGATTTTTGTTATTTTAATTGGATCCGTTAATTTCTATGTTTGATTTAGGTTATGTTTGGATATGCAATTGTAATTTAGTTAAGCACTTATTGAAAAGTGCTTATCATATCAGGTTACTATAAGTCCTTATCACCTTCCATCTGCCTATCTATTATTATTCTTGAAGAGGTAAATTTTTAAAAGTCAGGCAACATTTTTTTGTCATCAATAACATATTGTTTGTTCTATTTCTGATCGATTTCAAACAATAAAAAGCAGGAATTGTCTATATGACGAAACTGAAAAAATTGATTCCTTTTGTAGTTATCAGCAAATGAGATAGGATCCCTATTATGAGGAAATTAAAGGTGAGTTATTATTTGAGCATGTAGAAGTGATTTCTAAGCCATTTGTGAAGAAAATAAAAGATTATTTGCTGCTTACTTTTGATATTGTGGATTGATGTAACTGAAAACTTTTGATGATTTGCAGCTAGATTTTGAGAGTCAAATGAAATTAAAAGCATGGCAGGCACAAAACATCCCACATCGTACTATTATCAGGCAAGTGGGTACTAGAGAATTCATAGGAGTTGTTGCCCTATGA

Protein sequence

>MS.gene06269.t1

MSVFLLGYFHFDIGKRQAEEEVKAVSAKKQGVEEVAAKQKALKVVKKEESSLEESSEESEDEKPVAKAPAPSKKTPTKNGNVKKAQPETTSEESDSDDSSSSDEEETTSTSPVPAIIQFSRSVKKKEIGKQGLKKKLLKEGEVHYTGTLLDGMKFDSSRDRGTTFNFTLGQGYYKSLSPSICLSIIILEELDFESQMKLKAWQAQNIPHRTIIRQVGTREFIGVVAL