Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060968.t1 | XP_024632864.1 | 88.1 | 504 | 53 | 1 | 1 | 504 | 1 | 497 | 1.70E-257 | 898.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060968.t1 | Q9SAG4 | 23.9 | 452 | 280 | 15 | 17 | 451 | 50 | 454 | 2.7e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060968.t1 | A0A072VAP0 | 79.0 | 504 | 50 | 2 | 1 | 504 | 1 | 448 | 1.1e-223 | 785.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060968 | MS.gene065373 | PPI |
| MS.gene060968 | MS.gene54959 | PPI |
| MS.gene060968 | MS.gene047137 | PPI |
| MS.gene060968 | MS.gene51795 | PPI |
| MS.gene060968 | MS.gene071257 | PPI |
| MS.gene060968 | MS.gene047136 | PPI |
| MS.gene060968 | MS.gene072000 | PPI |
| MS.gene060968 | MS.gene033695 | PPI |
| MS.gene060968 | MS.gene78164 | PPI |
| MS.gene060968 | MS.gene01653 | PPI |
| MS.gene060968 | MS.gene024262 | PPI |
| MS.gene060968 | MS.gene51793 | PPI |
| MS.gene060968 | MS.gene033694 | PPI |
| MS.gene060968 | MS.gene045772 | PPI |
| MS.gene060968 | MS.gene54960 | PPI |
| MS.gene060968 | MS.gene072003 | PPI |
| MS.gene060968 | MS.gene002112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060968.t1 | MTR_2g072240 | 78.968 | 504 | 50 | 2 | 1 | 504 | 1 | 448 | 0.0 | 795 |
| MS.gene060968.t1 | MTR_6g034190 | 62.451 | 514 | 180 | 6 | 1 | 504 | 1 | 511 | 0.0 | 614 |
| MS.gene060968.t1 | MTR_2g070780 | 50.997 | 351 | 134 | 6 | 1 | 329 | 1 | 335 | 8.41e-104 | 315 |
| MS.gene060968.t1 | MTR_2g071700 | 50.621 | 322 | 146 | 3 | 17 | 327 | 18 | 337 | 2.95e-98 | 300 |
| MS.gene060968.t1 | MTR_2g071720 | 58.824 | 187 | 55 | 2 | 334 | 504 | 1 | 181 | 1.25e-66 | 213 |
| MS.gene060968.t1 | MTR_2g070660 | 39.024 | 205 | 89 | 4 | 1 | 201 | 1 | 173 | 1.03e-34 | 128 |
| MS.gene060968.t1 | MTR_2g070820 | 55.856 | 111 | 40 | 2 | 277 | 378 | 1 | 111 | 1.35e-28 | 110 |
| MS.gene060968.t1 | MTR_0049s0110 | 22.551 | 439 | 276 | 14 | 17 | 451 | 8 | 386 | 5.50e-17 | 83.6 |
| MS.gene060968.t1 | MTR_2g091145 | 21.957 | 460 | 272 | 12 | 12 | 451 | 16 | 408 | 4.68e-13 | 71.6 |
| MS.gene060968.t1 | MTR_1g016340 | 22.078 | 462 | 274 | 13 | 12 | 451 | 10 | 407 | 3.05e-11 | 65.9 |
| MS.gene060968.t1 | MTR_1g016340 | 22.078 | 462 | 274 | 13 | 12 | 451 | 15 | 412 | 3.35e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060968.t1 | AT1G80960 | 23.894 | 452 | 280 | 15 | 17 | 451 | 50 | 454 | 4.27e-15 | 78.2 |
| MS.gene060968.t1 | AT1G80960 | 23.894 | 452 | 280 | 15 | 17 | 451 | 50 | 454 | 4.27e-15 | 78.2 |
| MS.gene060968.t1 | AT1G80960 | 23.894 | 452 | 280 | 15 | 17 | 451 | 50 | 454 | 4.27e-15 | 78.2 |
| MS.gene060968.t1 | AT1G80960 | 23.799 | 458 | 285 | 15 | 11 | 451 | 5 | 415 | 4.97e-15 | 77.8 |
| MS.gene060968.t1 | AT1G80960 | 23.490 | 447 | 264 | 15 | 17 | 451 | 50 | 430 | 1.13e-13 | 73.6 |
| MS.gene060968.t1 | AT1G80960 | 27.891 | 294 | 170 | 9 | 17 | 303 | 50 | 308 | 1.23e-13 | 73.2 |
| MS.gene060968.t1 | AT3G58860 | 23.573 | 403 | 241 | 13 | 12 | 396 | 1 | 354 | 5.63e-12 | 68.2 |
Find 89 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAGTATATTTGACAATT+TGG | 0.237441 | 2.3:-24153206 | MS.gene060968:CDS |
| TCAAAACATGGTGGGGATTA+GGG | 0.259141 | 2.3:+24153794 | None:intergenic |
| AATGGTGATTGGACGAAATT+TGG | 0.266418 | 2.3:-24153901 | MS.gene060968:CDS |
| TTCAAAACATGGTGGGGATT+AGG | 0.267252 | 2.3:+24153793 | None:intergenic |
| TTTGAAGATTCTTTAGTTGA+TGG | 0.270378 | 2.3:+24153110 | None:intergenic |
| AATGATCTACAAAATATTAA+TGG | 0.277568 | 2.3:-24153919 | MS.gene060968:CDS |
| CAATTTGTTCTAGGTCAATA+TGG | 0.281608 | 2.3:-24152866 | MS.gene060968:intron |
| TACGGATAACATGGAGATTC+GGG | 0.304615 | 2.3:+24153515 | None:intergenic |
| ACGATTTCAACATTTCTCTT+TGG | 0.320819 | 2.3:+24154597 | None:intergenic |
| CGTACCCAGGAGTCTTGTTT+TGG | 0.327329 | 2.3:-24152792 | MS.gene060968:CDS |
| GCAATGTATTCTAGAAAATA+TGG | 0.333077 | 2.3:-24152529 | MS.gene060968:CDS |
| AACATTGAAGTCATTGAGAT+TGG | 0.338192 | 2.3:-24153577 | MS.gene060968:CDS |
| AAACATCAAAAGGCATAAAA+AGG | 0.342778 | 2.3:+24153872 | None:intergenic |
| GCTAGGAAGCTCTTCACCTT+AGG | 0.344889 | 2.3:+24152479 | None:intergenic |
| GGAGAAAGAAGTGAGAGATA+TGG | 0.349881 | 2.3:-24154768 | MS.gene060968:CDS |
| AGTTGCTACAACTTCATTCC+AGG | 0.354639 | 2.3:+24152612 | None:intergenic |
| AACAAAGCCGCTTTAGCAAT+TGG | 0.356119 | 2.3:+24154093 | None:intergenic |
| GACAATTTAAAAGAACGCTT+TGG | 0.366399 | 2.3:+24152571 | None:intergenic |
| AGGGGTATTAAACGTTTCAT+TGG | 0.368320 | 2.3:-24153953 | MS.gene060968:CDS |
| ACAATTTAAAAGAACGCTTT+GGG | 0.376169 | 2.3:+24152572 | None:intergenic |
| AATGCATTCGCATATTTAAG+AGG | 0.381007 | 2.3:+24154123 | None:intergenic |
| GTCAAGTACTTAATATTAAA+CGG | 0.383839 | 2.3:-24152679 | MS.gene060968:CDS |
| TGCGAAGCATTGCCAATTCA+AGG | 0.385381 | 2.3:+24154534 | None:intergenic |
| GACTCCTGGGTACGGTAAAC+AGG | 0.392989 | 2.3:+24152801 | None:intergenic |
| CTAGGAAGCTCTTCACCTTA+GGG | 0.401717 | 2.3:+24152480 | None:intergenic |
| AACTAAAGTCTCTTTGCATA+AGG | 0.403491 | 2.3:-24152735 | MS.gene060968:CDS |
| TTCTATAATTTCTTTCCTAC+CGG | 0.405330 | 2.3:-24154699 | MS.gene060968:CDS |
| ACTAAAGTCTCTTTGCATAA+GGG | 0.406294 | 2.3:-24152734 | MS.gene060968:CDS |
| TTCTATTATTTGTAAAATCT+AGG | 0.408559 | 2.3:+24153167 | None:intergenic |
| ATACGGATAACATGGAGATT+CGG | 0.412606 | 2.3:+24153514 | None:intergenic |
| GAATCTTCAAATAAATAATC+AGG | 0.416291 | 2.3:-24153098 | MS.gene060968:intron |
| GTGCAAGCGGGGACGTTGTA+AGG | 0.417346 | 2.3:-24153999 | MS.gene060968:CDS |
| ATTGGCAATGCTTCGCAAAC+AGG | 0.418348 | 2.3:-24154528 | MS.gene060968:intron |
| AAATGTTATTTATTTGGAGA+TGG | 0.420199 | 2.3:-24153679 | MS.gene060968:CDS |
| TACAAAATATTAATGGTGAT+TGG | 0.421056 | 2.3:-24153912 | MS.gene060968:CDS |
| AGGGATATTGTTGAAATTTG+CGG | 0.426435 | 2.3:-24153451 | MS.gene060968:CDS |
| ATTTAAAATATTTGAGACTT+GGG | 0.433261 | 2.3:+24153641 | None:intergenic |
| AAGATTCTTTAGTTGATGGC+TGG | 0.437082 | 2.3:+24153114 | None:intergenic |
| AATGTTATTTATTTGGAGAT+GGG | 0.440071 | 2.3:-24153678 | MS.gene060968:CDS |
| AATTTAAAATATTTGAGACT+TGG | 0.442943 | 2.3:+24153640 | None:intergenic |
| GTTCTCGCAGCATCTGTTGC+CGG | 0.446218 | 2.3:+24154680 | None:intergenic |
| TTATGCAAAGAGACTTTAGT+TGG | 0.458307 | 2.3:+24152737 | None:intergenic |
| CTTTGCCAAAACAAGACTCC+TGG | 0.459178 | 2.3:+24152787 | None:intergenic |
| AAACTAGTTAAAACATCAAA+AGG | 0.466646 | 2.3:+24153862 | None:intergenic |
| TTATAGAGAATATTACAATC+TGG | 0.473251 | 2.3:-24152651 | MS.gene060968:CDS |
| TTGTCCTTCGATCTTAAACC+TGG | 0.479119 | 2.3:-24152553 | MS.gene060968:CDS |
| GGTAGGAAAGAAATTATAGA+AGG | 0.484425 | 2.3:+24154701 | None:intergenic |
| TGAAGAAACTACTAGAGAAA+GGG | 0.486851 | 2.3:-24153972 | MS.gene060968:CDS |
| CTAGTGTGCTTTCCCATCGT+TGG | 0.491334 | 2.3:-24154658 | MS.gene060968:CDS |
| CTTTGCATAAGGGGATATAC+AGG | 0.492384 | 2.3:-24152724 | MS.gene060968:CDS |
| TTTCTAGAATACATTGCTCC+AGG | 0.492568 | 2.3:+24152535 | None:intergenic |
| ATATACTCCTCATGCAACCT+TGG | 0.505174 | 2.3:+24153218 | None:intergenic |
| TCAATTATTGATGATCATAT+CGG | 0.508163 | 2.3:-24154063 | MS.gene060968:CDS |
| ATGAAGAAACTACTAGAGAA+AGG | 0.519391 | 2.3:-24153973 | MS.gene060968:CDS |
| CATTGCAAATACGGATAACA+TGG | 0.521568 | 2.3:+24153506 | None:intergenic |
| CTAAAGTCTCTTTGCATAAG+GGG | 0.527260 | 2.3:-24152733 | MS.gene060968:CDS |
| TGTTAGAGAGTTGTGCAAGC+GGG | 0.530974 | 2.3:-24154011 | MS.gene060968:CDS |
| ATGTTATTTATTTGGAGATG+GGG | 0.532647 | 2.3:-24153677 | MS.gene060968:CDS |
| GGCAAAGAAGGGAGCCGTGT+TGG | 0.542017 | 2.3:-24152771 | MS.gene060968:CDS |
| TAAAATCTAGGTCGAGACAG+AGG | 0.542160 | 2.3:+24153179 | None:intergenic |
| TTTGGATCCAATTGCTAAAG+CGG | 0.542263 | 2.3:-24154100 | MS.gene060968:CDS |
| TGCTCCAGGTTTAAGATCGA+AGG | 0.542444 | 2.3:+24152549 | None:intergenic |
| ATAGAAGGTAGAAACACATC+AGG | 0.545819 | 2.3:+24154716 | None:intergenic |
| ATGGATTACATTTACAATGG+TGG | 0.558749 | 2.3:-24152847 | MS.gene060968:CDS |
| CAAAACATGGTGGGGATTAG+GGG | 0.565200 | 2.3:+24153795 | None:intergenic |
| AAGAGTGTTCAAAACATGGT+GGG | 0.569522 | 2.3:+24153786 | None:intergenic |
| TTTGCCAAAACAAGACTCCT+GGG | 0.585588 | 2.3:+24152788 | None:intergenic |
| CAAAACAAGACTCCTGGGTA+CGG | 0.587616 | 2.3:+24152793 | None:intergenic |
| AGGTTCGCCAAGGTTGCATG+AGG | 0.596479 | 2.3:-24153225 | MS.gene060968:CDS |
| AGAGTGTTCAAAACATGGTG+GGG | 0.602712 | 2.3:+24153787 | None:intergenic |
| GAAGAAACTACTAGAGAAAG+GGG | 0.605742 | 2.3:-24153971 | MS.gene060968:CDS |
| ACAAGTGGGTAACAACCCTA+AGG | 0.616412 | 2.3:-24152495 | MS.gene060968:CDS |
| GAGTAAGAGTGTTCAAAACA+TGG | 0.616962 | 2.3:+24153782 | None:intergenic |
| AATATGGATTACATTTACAA+TGG | 0.619659 | 2.3:-24152850 | MS.gene060968:CDS |
| GTTAGAGAGTTGTGCAAGCG+GGG | 0.626391 | 2.3:-24154010 | MS.gene060968:CDS |
| CGGGAGGCATTTAGCAACAA+GGG | 0.628806 | 2.3:-24153470 | MS.gene060968:CDS |
| GATATTGTTGAAATTTGCGG+TGG | 0.630343 | 2.3:-24153448 | MS.gene060968:CDS |
| CCCATCGTTGGAAAACAATG+TGG | 0.638374 | 2.3:-24154646 | MS.gene060968:CDS |
| ATGTTAGAGAGTTGTGCAAG+CGG | 0.639861 | 2.3:-24154012 | MS.gene060968:CDS |
| TCGGGAGGCATTTAGCAACA+AGG | 0.641215 | 2.3:-24153471 | MS.gene060968:CDS |
| AAAATCTAGGTCGAGACAGA+GGG | 0.643536 | 2.3:+24153180 | None:intergenic |
| TCGCAGCATCTGTTGCCGGT+AGG | 0.647583 | 2.3:+24154684 | None:intergenic |
| CAAGCGGGGACGTTGTAAGG+TGG | 0.656244 | 2.3:-24153996 | MS.gene060968:CDS |
| TAAGAGTGTTCAAAACATGG+TGG | 0.660999 | 2.3:+24153785 | None:intergenic |
| TGCATAAGGGGATATACAGG+TGG | 0.667384 | 2.3:-24152721 | MS.gene060968:CDS |
| AATGCCTGTTTACCGTACCC+AGG | 0.692347 | 2.3:-24152805 | MS.gene060968:CDS |
| ATGTATTCTAGAAAATATGG+TGG | 0.699813 | 2.3:-24152526 | MS.gene060968:CDS |
| TGGTAAGTGACACACCAACA+CGG | 0.710098 | 2.3:+24152757 | None:intergenic |
| ACGGATAACATGGAGATTCG+GGG | 0.723745 | 2.3:+24153516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATGAAAATTACAATA+GGG | + | chr2.3:24153979-24153998 | None:intergenic | 10.0% |
| !! | TAAATTATGAAAATTACAAT+AGG | + | chr2.3:24153980-24153999 | None:intergenic | 10.0% |
| !!! | AAATAAATAACATTTTTCAA+GGG | + | chr2.3:24153590-24153609 | None:intergenic | 10.0% |
| !!! | TAAATATAGTTTTTAACATA+TGG | + | chr2.3:24154222-24154241 | None:intergenic | 10.0% |
| !! | AATGATCTACAAAATATTAA+TGG | - | chr2.3:24153355-24153374 | MS.gene060968:intron | 15.0% |
| !! | TATTAATCTAATTGTAGTAT+TGG | + | chr2.3:24152934-24152953 | None:intergenic | 15.0% |
| !! | TTCTATTATTTGTAAAATCT+AGG | + | chr2.3:24154110-24154129 | None:intergenic | 15.0% |
| !!! | AATTTAAAATATTTGAGACT+TGG | + | chr2.3:24153637-24153656 | None:intergenic | 15.0% |
| !!! | ATTAATATTTTGTAGATCAT+TGG | + | chr2.3:24153356-24153375 | None:intergenic | 15.0% |
| !!! | ATTTAAAATATTTGAGACTT+GGG | + | chr2.3:24153636-24153655 | None:intergenic | 15.0% |
| !!! | CAAATAAATAACATTTTTCA+AGG | + | chr2.3:24153591-24153610 | None:intergenic | 15.0% |
| !!! | CATCTATTTTATTACAAAAA+GGG | + | chr2.3:24153068-24153087 | None:intergenic | 15.0% |
| !!! | CTTGAAAAATGTTATTTATT+TGG | - | chr2.3:24153589-24153608 | MS.gene060968:CDS | 15.0% |
| !!! | TCATCTATTTTATTACAAAA+AGG | + | chr2.3:24153069-24153088 | None:intergenic | 15.0% |
| !!! | TTTTTGATTTGATTTTTTCT+TGG | - | chr2.3:24152875-24152894 | MS.gene060968:intron | 15.0% |
| !! | AAACTAGTTAAAACATCAAA+AGG | + | chr2.3:24153415-24153434 | None:intergenic | 20.0% |
| !! | GAATCTTCAAATAAATAATC+AGG | - | chr2.3:24154176-24154195 | MS.gene060968:intron | 20.0% |
| !! | GTCAAGTACTTAATATTAAA+CGG | - | chr2.3:24154595-24154614 | MS.gene060968:CDS | 20.0% |
| !! | TACAAAATATTAATGGTGAT+TGG | - | chr2.3:24153362-24153381 | MS.gene060968:intron | 20.0% |
| !! | TGATTAACTGGAATTAATAA+GGG | - | chr2.3:24153940-24153959 | MS.gene060968:CDS | 20.0% |
| !! | TTAGGAATCTATATCATATT+TGG | + | chr2.3:24153112-24153131 | None:intergenic | 20.0% |
| !! | TTATAGAGAATATTACAATC+TGG | - | chr2.3:24154623-24154642 | MS.gene060968:CDS | 20.0% |
| !! | TTGAAGAAAAAAACATTTCA+TGG | + | chr2.3:24154391-24154410 | None:intergenic | 20.0% |
| !! | TTGATTAACTGGAATTAATA+AGG | - | chr2.3:24153939-24153958 | MS.gene060968:CDS | 20.0% |
| !!! | AAATGTTATTTATTTGGAGA+TGG | - | chr2.3:24153595-24153614 | MS.gene060968:CDS | 20.0% |
| !!! | AATATGGATTACATTTACAA+TGG | - | chr2.3:24154424-24154443 | MS.gene060968:intron | 20.0% |
| !!! | AATGTTATTTATTTGGAGAT+GGG | - | chr2.3:24153596-24153615 | MS.gene060968:CDS | 20.0% |
| !!! | TCAATTATTGATGATCATAT+CGG | - | chr2.3:24153211-24153230 | MS.gene060968:CDS | 20.0% |
| !!! | TGATGTTTTAACTAGTTTTA+AGG | - | chr2.3:24153417-24153436 | MS.gene060968:intron | 20.0% |
| !!! | TTTAACTAGTTTTAAGGTTT+TGG | - | chr2.3:24153423-24153442 | MS.gene060968:intron | 20.0% |
| !!! | TTTTTTCTTCAATTTGTTCT+AGG | - | chr2.3:24154399-24154418 | MS.gene060968:intron | 20.0% |
| ! | ACAATTTAAAAGAACGCTTT+GGG | + | chr2.3:24154705-24154724 | None:intergenic | 25.0% |
| ! | CAATAGTTAGGTTAATCAAT+TGG | - | chr2.3:24152978-24152997 | MS.gene060968:intron | 25.0% |
| ! | CATAGATACATTTGATTAAC+TGG | - | chr2.3:24153928-24153947 | MS.gene060968:CDS | 25.0% |
| ! | TTCTATAATTTCTTTCCTAC+CGG | - | chr2.3:24152575-24152594 | MS.gene060968:CDS | 25.0% |
| ! | TTTGAAGATTCTTTAGTTGA+TGG | + | chr2.3:24154167-24154186 | None:intergenic | 25.0% |
| !! | AAACATCAAAAGGCATAAAA+AGG | + | chr2.3:24153405-24153424 | None:intergenic | 25.0% |
| !! | AATTGTAGTATTGGAAAGAA+TGG | + | chr2.3:24152925-24152944 | None:intergenic | 25.0% |
| !! | ATGTATTCTAGAAAATATGG+TGG | - | chr2.3:24154748-24154767 | MS.gene060968:CDS | 25.0% |
| !! | ATGTTATTTATTTGGAGATG+GGG | - | chr2.3:24153597-24153616 | MS.gene060968:CDS | 25.0% |
| !! | GCAATGTATTCTAGAAAATA+TGG | - | chr2.3:24154745-24154764 | MS.gene060968:CDS | 25.0% |
| !! | TAAATATGCGAATGCATTTT+TGG | - | chr2.3:24153156-24153175 | MS.gene060968:CDS | 25.0% |
| !! | TTTTCACATCATTGCAAATA+CGG | + | chr2.3:24153780-24153799 | None:intergenic | 25.0% |
| !!! | AAACTATTGACATTGATTCA+TGG | + | chr2.3:24153898-24153917 | None:intergenic | 25.0% |
| !!! | AACTATTGACATTGATTCAT+GGG | + | chr2.3:24153897-24153916 | None:intergenic | 25.0% |
| !!! | CAATTTGTCCTTATTTTCTT+AGG | - | chr2.3:24154029-24154048 | MS.gene060968:CDS | 25.0% |
| !!! | GAATATTACAATCTGGTTTT+TGG | - | chr2.3:24154630-24154649 | MS.gene060968:CDS | 25.0% |
| AACATTGAAGTCATTGAGAT+TGG | - | chr2.3:24153697-24153716 | MS.gene060968:CDS | 30.0% | |
| AACTAAAGTCTCTTTGCATA+AGG | - | chr2.3:24154539-24154558 | MS.gene060968:CDS | 30.0% | |
| AATGCATTCGCATATTTAAG+AGG | + | chr2.3:24153154-24153173 | None:intergenic | 30.0% | |
| ACGATTTCAACATTTCTCTT+TGG | + | chr2.3:24152680-24152699 | None:intergenic | 30.0% | |
| ACTAAAGTCTCTTTGCATAA+GGG | - | chr2.3:24154540-24154559 | MS.gene060968:CDS | 30.0% | |
| ACTTGGAATTAGATTCTCTA+TGG | + | chr2.3:24153037-24153056 | None:intergenic | 30.0% | |
| AGGGATATTGTTGAAATTTG+CGG | - | chr2.3:24153823-24153842 | MS.gene060968:CDS | 30.0% | |
| ATAAATAATCAGGTGCGTTT+AGG | - | chr2.3:24154186-24154205 | MS.gene060968:intron | 30.0% | |
| ATGAAGAAACTACTAGAGAA+AGG | - | chr2.3:24153301-24153320 | MS.gene060968:intron | 30.0% | |
| CAAAAAGGGAAGTAAAAACT+TGG | + | chr2.3:24153054-24153073 | None:intergenic | 30.0% | |
| GACAATTTAAAAGAACGCTT+TGG | + | chr2.3:24154706-24154725 | None:intergenic | 30.0% | |
| GCAGTGATATTTCAATAGTT+AGG | - | chr2.3:24152966-24152985 | MS.gene060968:intron | 30.0% | |
| GGTAGGAAAGAAATTATAGA+AGG | + | chr2.3:24152576-24152595 | None:intergenic | 30.0% | |
| TAAAAATAAGCGCCTTGAAT+TGG | - | chr2.3:24152728-24152747 | MS.gene060968:CDS | 30.0% | |
| TGAAGAAACTACTAGAGAAA+GGG | - | chr2.3:24153302-24153321 | MS.gene060968:intron | 30.0% | |
| TGCAATGATGTGAAAAATCT+CGG | - | chr2.3:24153784-24153803 | MS.gene060968:CDS | 30.0% | |
| TTATGCAAAGAGACTTTAGT+TGG | + | chr2.3:24154540-24154559 | None:intergenic | 30.0% | |
| ! | ATCTGTCATGCACAAATTTT+AGG | + | chr2.3:24153130-24153149 | None:intergenic | 30.0% |
| ! | ATGGATTACATTTACAATGG+TGG | - | chr2.3:24154427-24154446 | MS.gene060968:intron | 30.0% |
| ! | CAATTTGTTCTAGGTCAATA+TGG | - | chr2.3:24154408-24154427 | MS.gene060968:intron | 30.0% |
| ! | GAGGAGTATATTTGACAATT+TGG | - | chr2.3:24154068-24154087 | MS.gene060968:CDS | 30.0% |
| ! | TTTTTGATATGATCGTGCAT+AGG | - | chr2.3:24153656-24153675 | MS.gene060968:CDS | 30.0% |
| AATGGTGATTGGACGAAATT+TGG | - | chr2.3:24153373-24153392 | MS.gene060968:intron | 35.0% | |
| ATACGGATAACATGGAGATT+CGG | + | chr2.3:24153763-24153782 | None:intergenic | 35.0% | |
| ATAGAAGGTAGAAACACATC+AGG | + | chr2.3:24152561-24152580 | None:intergenic | 35.0% | |
| CATTGCAAATACGGATAACA+TGG | + | chr2.3:24153771-24153790 | None:intergenic | 35.0% | |
| CTAAAGTCTCTTTGCATAAG+GGG | - | chr2.3:24154541-24154560 | MS.gene060968:CDS | 35.0% | |
| GAAGAAACTACTAGAGAAAG+GGG | - | chr2.3:24153303-24153322 | MS.gene060968:intron | 35.0% | |
| GATATTGTTGAAATTTGCGG+TGG | - | chr2.3:24153826-24153845 | MS.gene060968:CDS | 35.0% | |
| GCAATGATGTGAAAAATCTC+GGG | - | chr2.3:24153785-24153804 | MS.gene060968:CDS | 35.0% | |
| TTGGCGAACCTAAGAAAATA+AGG | + | chr2.3:24154040-24154059 | None:intergenic | 35.0% | |
| TTTGGATCCAATTGCTAAAG+CGG | - | chr2.3:24153174-24153193 | MS.gene060968:CDS | 35.0% | |
| ! | CTAATGCTGCAACTTTTCAA+AGG | + | chr2.3:24153238-24153257 | None:intergenic | 35.0% |
| ! | TTATTTTCTTAGGTTCGCCA+AGG | - | chr2.3:24154039-24154058 | MS.gene060968:CDS | 35.0% |
| !! | AAGAGTGTTCAAAACATGGT+GGG | + | chr2.3:24153491-24153510 | None:intergenic | 35.0% |
| !! | AAGATTCTTTAGTTGATGGC+TGG | + | chr2.3:24154163-24154182 | None:intergenic | 35.0% |
| !! | AGGGGTATTAAACGTTTCAT+TGG | - | chr2.3:24153321-24153340 | MS.gene060968:intron | 35.0% |
| !! | GAGTAAGAGTGTTCAAAACA+TGG | + | chr2.3:24153495-24153514 | None:intergenic | 35.0% |
| !! | TAAGAGTGTTCAAAACATGG+TGG | + | chr2.3:24153492-24153511 | None:intergenic | 35.0% |
| !! | TTTCTAGAATACATTGCTCC+AGG | + | chr2.3:24154742-24154761 | None:intergenic | 35.0% |
| !!! | AGTCTTGTTTTGGCAAAGAA+GGG | - | chr2.3:24154492-24154511 | MS.gene060968:intron | 35.0% |
| !!! | ATGGTGGTAGTTTTAACAAG+TGG | - | chr2.3:24154764-24154783 | MS.gene060968:CDS | 35.0% |
| !!! | TGGTGGTAGTTTTAACAAGT+GGG | - | chr2.3:24154765-24154784 | MS.gene060968:CDS | 35.0% |
| AAAATCTAGGTCGAGACAGA+GGG | + | chr2.3:24154097-24154116 | None:intergenic | 40.0% | |
| AGTTGCTACAACTTCATTCC+AGG | + | chr2.3:24154665-24154684 | None:intergenic | 40.0% | |
| ATATACTCCTCATGCAACCT+TGG | + | chr2.3:24154059-24154078 | None:intergenic | 40.0% | |
| ATGATGTGAAAAATCTCGGG+AGG | - | chr2.3:24153788-24153807 | MS.gene060968:CDS | 40.0% | |
| ATGTTAGAGAGTTGTGCAAG+CGG | - | chr2.3:24153262-24153281 | MS.gene060968:intron | 40.0% | |
| CTTTGCATAAGGGGATATAC+AGG | - | chr2.3:24154550-24154569 | MS.gene060968:CDS | 40.0% | |
| GGAGAAAGAAGTGAGAGATA+TGG | - | chr2.3:24152506-24152525 | MS.gene060968:CDS | 40.0% | |
| TAAAATCTAGGTCGAGACAG+AGG | + | chr2.3:24154098-24154117 | None:intergenic | 40.0% | |
| TACGGATAACATGGAGATTC+GGG | + | chr2.3:24153762-24153781 | None:intergenic | 40.0% | |
| TTGTCCTTCGATCTTAAACC+TGG | - | chr2.3:24154721-24154740 | MS.gene060968:CDS | 40.0% | |
| TTTGCCAAAACAAGACTCCT+GGG | + | chr2.3:24154489-24154508 | None:intergenic | 40.0% | |
| ! | AACAAAGCCGCTTTAGCAAT+TGG | + | chr2.3:24153184-24153203 | None:intergenic | 40.0% |
| ! | AGAGTGTTCAAAACATGGTG+GGG | + | chr2.3:24153490-24153509 | None:intergenic | 40.0% |
| ! | CCACATTGTTTTCCAACGAT+GGG | + | chr2.3:24152631-24152650 | None:intergenic | 40.0% |
| ! | TCAAAACATGGTGGGGATTA+GGG | + | chr2.3:24153483-24153502 | None:intergenic | 40.0% |
| ! | TCCACATTGTTTTCCAACGA+TGG | + | chr2.3:24152632-24152651 | None:intergenic | 40.0% |
| ! | TTCAAAACATGGTGGGGATT+AGG | + | chr2.3:24153484-24153503 | None:intergenic | 40.0% |
| !!! | GAGTCTTGTTTTGGCAAAGA+AGG | - | chr2.3:24154491-24154510 | MS.gene060968:intron | 40.0% |
| ACAAGTGGGTAACAACCCTA+AGG | - | chr2.3:24154779-24154798 | MS.gene060968:CDS | 45.0% | |
| ACGGATAACATGGAGATTCG+GGG | + | chr2.3:24153761-24153780 | None:intergenic | 45.0% | |
| ATTGGCAATGCTTCGCAAAC+AGG | - | chr2.3:24152746-24152765 | MS.gene060968:CDS | 45.0% | |
| CAAAACAAGACTCCTGGGTA+CGG | + | chr2.3:24154484-24154503 | None:intergenic | 45.0% | |
| CCCATCGTTGGAAAACAATG+TGG | - | chr2.3:24152628-24152647 | MS.gene060968:CDS | 45.0% | |
| CTTTGCCAAAACAAGACTCC+TGG | + | chr2.3:24154490-24154509 | None:intergenic | 45.0% | |
| TGCATAAGGGGATATACAGG+TGG | - | chr2.3:24154553-24154572 | MS.gene060968:CDS | 45.0% | |
| TGGTAAGTGACACACCAACA+CGG | + | chr2.3:24154520-24154539 | None:intergenic | 45.0% | |
| TGTTAGAGAGTTGTGCAAGC+GGG | - | chr2.3:24153263-24153282 | MS.gene060968:intron | 45.0% | |
| ! | CAAAACATGGTGGGGATTAG+GGG | + | chr2.3:24153482-24153501 | None:intergenic | 45.0% |
| ! | TGCTCCAGGTTTAAGATCGA+AGG | + | chr2.3:24154728-24154747 | None:intergenic | 45.0% |
| !! | GGTTTTTGGATGATTGCTCC+TGG | - | chr2.3:24154644-24154663 | MS.gene060968:CDS | 45.0% |
| !! | TGCGAAGCATTGCCAATTCA+AGG | + | chr2.3:24152743-24152762 | None:intergenic | 45.0% |
| AATGCCTGTTTACCGTACCC+AGG | - | chr2.3:24154469-24154488 | MS.gene060968:intron | 50.0% | |
| CTAGTGTGCTTTCCCATCGT+TGG | - | chr2.3:24152616-24152635 | MS.gene060968:CDS | 50.0% | |
| GTTAGAGAGTTGTGCAAGCG+GGG | - | chr2.3:24153264-24153283 | MS.gene060968:intron | 50.0% | |
| !! | CGGGAGGCATTTAGCAACAA+GGG | - | chr2.3:24153804-24153823 | MS.gene060968:CDS | 50.0% |
| !! | TCGGGAGGCATTTAGCAACA+AGG | - | chr2.3:24153803-24153822 | MS.gene060968:CDS | 50.0% |
| !!! | CGTACCCAGGAGTCTTGTTT+TGG | - | chr2.3:24154482-24154501 | MS.gene060968:intron | 50.0% |
| AGGTTCGCCAAGGTTGCATG+AGG | - | chr2.3:24154049-24154068 | MS.gene060968:CDS | 55.0% | |
| GACTCCTGGGTACGGTAAAC+AGG | + | chr2.3:24154476-24154495 | None:intergenic | 55.0% | |
| GTTCTCGCAGCATCTGTTGC+CGG | + | chr2.3:24152597-24152616 | None:intergenic | 55.0% | |
| CAAGCGGGGACGTTGTAAGG+TGG | - | chr2.3:24153278-24153297 | MS.gene060968:intron | 60.0% | |
| GGCAAAGAAGGGAGCCGTGT+TGG | - | chr2.3:24154503-24154522 | MS.gene060968:intron | 60.0% | |
| GTGCAAGCGGGGACGTTGTA+AGG | - | chr2.3:24153275-24153294 | MS.gene060968:intron | 60.0% | |
| TCGCAGCATCTGTTGCCGGT+AGG | + | chr2.3:24152593-24152612 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 24152492 | 24154804 | 24152492 | ID=MS.gene060968 |
| chr2.3 | mRNA | 24152492 | 24154804 | 24152492 | ID=MS.gene060968.t1;Parent=MS.gene060968 |
| chr2.3 | exon | 24154529 | 24154804 | 24154529 | ID=MS.gene060968.t1.exon1;Parent=MS.gene060968.t1 |
| chr2.3 | CDS | 24154529 | 24154804 | 24154529 | ID=cds.MS.gene060968.t1;Parent=MS.gene060968.t1 |
| chr2.3 | exon | 24153441 | 24154148 | 24153441 | ID=MS.gene060968.t1.exon2;Parent=MS.gene060968.t1 |
| chr2.3 | CDS | 24153441 | 24154148 | 24153441 | ID=cds.MS.gene060968.t1;Parent=MS.gene060968.t1 |
| chr2.3 | exon | 24153099 | 24153245 | 24153099 | ID=MS.gene060968.t1.exon3;Parent=MS.gene060968.t1 |
| chr2.3 | CDS | 24153099 | 24153245 | 24153099 | ID=cds.MS.gene060968.t1;Parent=MS.gene060968.t1 |
| chr2.3 | exon | 24152492 | 24152875 | 24152492 | ID=MS.gene060968.t1.exon4;Parent=MS.gene060968.t1 |
| chr2.3 | CDS | 24152492 | 24152875 | 24152492 | ID=cds.MS.gene060968.t1;Parent=MS.gene060968.t1 |
| Gene Sequence |
| Protein sequence |
