Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061163.t1 | XP_003592260.2 | 90.4 | 456 | 44 | 0 | 1 | 456 | 1 | 456 | 3.70E-208 | 734.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061163.t1 | Q5XVA8 | 40.9 | 298 | 154 | 6 | 39 | 333 | 79 | 357 | 3.8e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061163.t1 | G7IES8 | 90.4 | 456 | 44 | 0 | 1 | 456 | 1 | 456 | 2.7e-208 | 734.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054651 | MS.gene061163 | 0.822314 | 2.53E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene061163 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene061163 | MS.gene073753 | 0.80254 | 5.34E-49 | -1.69E-46 |
| MS.gene061163 | MS.gene34145 | 0.929637 | 5.22E-93 | -1.69E-46 |
| MS.gene061163 | MS.gene49283 | 0.815834 | 7.55E-52 | -1.69E-46 |
| MS.gene061163 | MS.gene67746 | 0.804005 | 2.66E-49 | -1.69E-46 |
| MS.gene061163 | MS.gene75490 | 0.817549 | 3.11E-52 | -1.69E-46 |
| MS.gene061163 | MS.gene82145 | 0.816815 | 4.55E-52 | -1.69E-46 |
| MS.gene061163 | MS.gene98611 | 0.830117 | 3.52E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061163 | MS.gene56252 | PPI |
| MS.gene065578 | MS.gene061163 | PPI |
| MS.gene009450 | MS.gene061163 | PPI |
| MS.gene063424 | MS.gene061163 | PPI |
| MS.gene059442 | MS.gene061163 | PPI |
| MS.gene061163 | MS.gene51623 | PPI |
| MS.gene059441 | MS.gene061163 | PPI |
| MS.gene84379 | MS.gene061163 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061163.t1 | MTR_1g100880 | 94.298 | 456 | 26 | 0 | 1 | 456 | 1 | 456 | 0.0 | 848 |
| MS.gene061163.t1 | MTR_8g089685 | 35.258 | 329 | 196 | 5 | 103 | 426 | 313 | 629 | 2.09e-35 | 139 |
| MS.gene061163.t1 | MTR_8g089685 | 30.043 | 233 | 147 | 4 | 103 | 331 | 313 | 533 | 1.35e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061163.t1 | AT3G49055 | 49.351 | 308 | 145 | 4 | 125 | 431 | 156 | 453 | 2.64e-71 | 233 |
| MS.gene061163.t1 | AT1G24560 | 37.425 | 334 | 191 | 8 | 125 | 452 | 351 | 672 | 5.25e-34 | 135 |
Find 88 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAGGATTGCATTTC+TGG | 0.079330 | 1.4:-77934509 | None:intergenic |
| TCAGAGGTGTAGGGTGAATT+TGG | 0.200366 | 1.4:-77931753 | None:intergenic |
| CATTTCTGGTATCATCCTTT+TGG | 0.244152 | 1.4:-77934495 | None:intergenic |
| CACTCAATTGAGAAGATCTT+TGG | 0.250215 | 1.4:+77933198 | MS.gene061163:CDS |
| TGAATCCTTCATTTCAATAA+AGG | 0.255904 | 1.4:+77931926 | MS.gene061163:CDS |
| TAAAGGGACATGATCATAAA+AGG | 0.299279 | 1.4:+77932249 | MS.gene061163:CDS |
| TTATAAGGAGTTAAGGAAAA+AGG | 0.301417 | 1.4:+77932118 | MS.gene061163:CDS |
| CTTGCTTAGGGTTGCTTTGT+TGG | 0.306411 | 1.4:+77932202 | MS.gene061163:CDS |
| TGAATCGACGGTGTTGTTAT+TGG | 0.323423 | 1.4:+77932040 | MS.gene061163:CDS |
| GGGATATTAATAACTTGCTT+AGG | 0.323686 | 1.4:+77932189 | MS.gene061163:CDS |
| AACAAAGGTGGAAAATTATA+AGG | 0.327278 | 1.4:+77932103 | MS.gene061163:CDS |
| CTCTGATTCCTCTAGTTGTC+TGG | 0.328896 | 1.4:-77934369 | None:intergenic |
| CAAGTTTAACTGAAGAGAAT+AGG | 0.334464 | 1.4:+77932168 | MS.gene061163:CDS |
| GGCATTGGAGAAGAAAATAA+AGG | 0.348101 | 1.4:+77932232 | MS.gene061163:CDS |
| CTCAAAACAGTTTCAGAGTA+AGG | 0.362902 | 1.4:-77931810 | None:intergenic |
| GATTGAAGAGCGTGACAAAA+TGG | 0.368630 | 1.4:+77933852 | MS.gene061163:CDS |
| TTCTCAATTGAGTGATTTCA+AGG | 0.377950 | 1.4:-77933189 | None:intergenic |
| AATATTGCTACCTCTAGAAT+TGG | 0.380419 | 1.4:+77934467 | MS.gene061163:CDS |
| TGAAGTGGAAGTTGTTAGTT+TGG | 0.382314 | 1.4:+77932400 | MS.gene061163:CDS |
| GGAATCCTTTATTGAAATGA+AGG | 0.382840 | 1.4:-77931931 | None:intergenic |
| TGGAAAATTATAAGGAGTTA+AGG | 0.385060 | 1.4:+77932111 | MS.gene061163:CDS |
| AGAGAGTTTAGAGGGAGAAA+AGG | 0.399871 | 1.4:+77931968 | MS.gene061163:CDS |
| GCAGAAAACAAAGGGTGCTT+TGG | 0.404761 | 1.4:+77934211 | MS.gene061163:CDS |
| GAAGATCTTTGGAAGAATCT+AGG | 0.411043 | 1.4:+77933209 | MS.gene061163:CDS |
| CAGAAGAAGAGGTAGCTAGA+TGG | 0.415692 | 1.4:+77933788 | MS.gene061163:CDS |
| CTTTATCTGAATGAAGACTA+TGG | 0.417754 | 1.4:-77931785 | None:intergenic |
| ATGGAAGGAAGCTTGTGAAT+TGG | 0.425674 | 1.4:+77933807 | MS.gene061163:CDS |
| TAGAGTAAAAGAGAGTTTAG+AGG | 0.428291 | 1.4:+77931959 | MS.gene061163:CDS |
| ATTGTTGAGTTTGTACTGAT+TGG | 0.430495 | 1.4:-77931730 | None:intergenic |
| GGTTGCTTTGTTGGAGAAAG+AGG | 0.435951 | 1.4:+77932211 | MS.gene061163:CDS |
| AGCTTGTGAATTGGAAGTTA+AGG | 0.438841 | 1.4:+77933816 | MS.gene061163:CDS |
| AGTTTGGATTGCAGAAAGTT+GGG | 0.445362 | 1.4:+77932294 | MS.gene061163:CDS |
| AGTTTGTACTGATTGGAAGA+TGG | 0.446181 | 1.4:-77931723 | None:intergenic |
| GGATTGCAGAAAGTTGGGTT+TGG | 0.447142 | 1.4:+77932299 | MS.gene061163:CDS |
| AACTCAGCAAACTGCAAAAG+TGG | 0.459010 | 1.4:-77932275 | None:intergenic |
| GGATATTAATAACTTGCTTA+GGG | 0.460080 | 1.4:+77932190 | MS.gene061163:CDS |
| AAGTTTAACTGAAGAGAATA+GGG | 0.463002 | 1.4:+77932169 | MS.gene061163:CDS |
| TTTGTTTCTCTGTGAGACAC+TGG | 0.481946 | 1.4:-77933566 | None:intergenic |
| ATACACATCTCATTGAAGAA+AGG | 0.484459 | 1.4:-77934522 | None:intergenic |
| CTGATTGGAAGATGGGTGAT+AGG | 0.487601 | 1.4:-77931715 | None:intergenic |
| AAGAGGCAAGGTTAATATCA+AGG | 0.488668 | 1.4:+77932063 | MS.gene061163:CDS |
| GAGTTTGGATTGCAGAAAGT+TGG | 0.488938 | 1.4:+77932293 | MS.gene061163:CDS |
| GACGGTGTTGTTATTGGAAG+AGG | 0.492182 | 1.4:+77932046 | MS.gene061163:CDS |
| AGAAGATAGAGAGAGAATCT+TGG | 0.496215 | 1.4:+77933629 | MS.gene061163:CDS |
| TGAACTTCGTCGGCAGATAG+AGG | 0.497803 | 1.4:+77934340 | MS.gene061163:CDS |
| CATTATCCTTTCCACTGTTG+AGG | 0.498340 | 1.4:-77933155 | None:intergenic |
| TTTGGATTCATGATGGGAGG+TGG | 0.499288 | 1.4:+77932317 | MS.gene061163:CDS |
| AGTTGGGTTTGGATTCATGA+TGG | 0.502092 | 1.4:+77932310 | MS.gene061163:CDS |
| GTTTGTACTGATTGGAAGAT+GGG | 0.507092 | 1.4:-77931722 | None:intergenic |
| TGGTAATAATGTGCAATCAA+TGG | 0.508772 | 1.4:+77932337 | MS.gene061163:CDS |
| GCATTGGAGAAGAAAATAAA+GGG | 0.508904 | 1.4:+77932233 | MS.gene061163:CDS |
| AGAGTAAAAGAGAGTTTAGA+GGG | 0.509789 | 1.4:+77931960 | MS.gene061163:CDS |
| TGTGAATTGGAAGTTAAGGC+TGG | 0.515864 | 1.4:+77933820 | MS.gene061163:CDS |
| AATCAAAGAAACAGAAGAAG+AGG | 0.521307 | 1.4:+77933777 | MS.gene061163:CDS |
| CTAGAATTGGAAATGCCAAA+AGG | 0.523851 | 1.4:+77934480 | MS.gene061163:CDS |
| GGGTTTGGATTCATGATGGG+AGG | 0.525505 | 1.4:+77932314 | MS.gene061163:CDS |
| GTTGGGTTTGGATTCATGAT+GGG | 0.528280 | 1.4:+77932311 | MS.gene061163:CDS |
| TTTGTTGGAGAAAGAGGCAT+TGG | 0.529077 | 1.4:+77932217 | MS.gene061163:CDS |
| AATGGCTGCAATAGCTGCAC+GGG | 0.535240 | 1.4:+77934274 | MS.gene061163:CDS |
| GTCAGAAACTTCAGAGGTGT+AGG | 0.536212 | 1.4:-77931763 | None:intergenic |
| CAATGGCTGCAATAGCTGCA+CGG | 0.542074 | 1.4:+77934273 | MS.gene061163:CDS |
| CAAGAACTGCAGAAAACAAA+GGG | 0.555928 | 1.4:+77934203 | MS.gene061163:CDS |
| AGATAGCAGTGAGTGTGAAG+TGG | 0.556533 | 1.4:+77932385 | MS.gene061163:CDS |
| AATATCAAGGCTTGCAACTG+AGG | 0.558159 | 1.4:+77932076 | MS.gene061163:CDS |
| AAGCGAGTCGACGTATATGT+TGG | 0.561860 | 1.4:+77934414 | MS.gene061163:CDS |
| ATCAAGGCTTGCAACTGAGG+TGG | 0.576214 | 1.4:+77932079 | MS.gene061163:CDS |
| AGAAGAGGTAGCTAGATGGA+AGG | 0.576787 | 1.4:+77933792 | MS.gene061163:CDS |
| TGTCAGAGAAATAGTTTGTG+AGG | 0.577043 | 1.4:+77932001 | MS.gene061163:CDS |
| TGTTGTTATTGGAAGAGGCA+AGG | 0.579247 | 1.4:+77932051 | MS.gene061163:CDS |
| AGAAAACAAACTCTACATCA+AGG | 0.582148 | 1.4:+77933602 | MS.gene061163:CDS |
| CCAAGGCCTCAACAGTGGAA+AGG | 0.591423 | 1.4:+77933149 | MS.gene061163:intron |
| GTAGAGGAGTTGAACTTCGT+CGG | 0.592524 | 1.4:+77934330 | MS.gene061163:CDS |
| TGCAACTGAGGTGGAAACAA+AGG | 0.599427 | 1.4:+77932088 | MS.gene061163:CDS |
| TTTGGCATTTCCAATTCTAG+AGG | 0.603440 | 1.4:-77934477 | None:intergenic |
| GGAACTAACCAGACAACTAG+AGG | 0.607450 | 1.4:+77934361 | MS.gene061163:CDS |
| GTTTCTCTGTGAGACACTGG+AGG | 0.609222 | 1.4:-77933563 | None:intergenic |
| TCAGAAACTTCAGAGGTGTA+GGG | 0.615156 | 1.4:-77931762 | None:intergenic |
| ATCAATGGATGGTACTTCTG+AGG | 0.620756 | 1.4:+77932352 | MS.gene061163:CDS |
| AGAGTTAAGTGATGAATCGA+CGG | 0.625680 | 1.4:+77932028 | MS.gene061163:CDS |
| AATAATGTGCAATCAATGGA+TGG | 0.631660 | 1.4:+77932341 | MS.gene061163:CDS |
| ACAAGAACTGCAGAAAACAA+AGG | 0.632471 | 1.4:+77934202 | MS.gene061163:CDS |
| TTGAAGCTAGCTGATAGTAG+AGG | 0.633294 | 1.4:+77934314 | MS.gene061163:CDS |
| TGTATTGGATGGAAATGAAG+CGG | 0.638676 | 1.4:+77931845 | MS.gene061163:CDS |
| GTCGACGTATATGTTGGCCA+TGG | 0.642616 | 1.4:+77934420 | MS.gene061163:CDS |
| ACTCAAAGAAGAGCTAGCAA+TGG | 0.653656 | 1.4:+77934256 | MS.gene061163:CDS |
| AACTGAGGTGGAAACAAAGG+TGG | 0.664974 | 1.4:+77932091 | MS.gene061163:CDS |
| ACTATGGTCAGAAACTTCAG+AGG | 0.696124 | 1.4:-77931769 | None:intergenic |
| CTGCACGGGAAGCAGCAGAG+AGG | 0.717752 | 1.4:+77934288 | MS.gene061163:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAATATATAAACAA+TGG | - | chr1.4:77933957-77933976 | None:intergenic | 10.0% |
| !! | AATATCATAACATTACTTAA+TGG | + | chr1.4:77932858-77932877 | MS.gene061163:intron | 15.0% |
| !! | AGATATAGATTATAGTTTAA+CGG | - | chr1.4:77934140-77934159 | None:intergenic | 15.0% |
| !!! | AAGTATTCTTTTTATTGATA+TGG | - | chr1.4:77933899-77933918 | None:intergenic | 15.0% |
| !!! | ATAATTTGTATATAGAACTA+AGG | - | chr1.4:77932440-77932459 | None:intergenic | 15.0% |
| !!! | TAGTTCTATATACAAATTAT+AGG | + | chr1.4:77932440-77932459 | MS.gene061163:intron | 15.0% |
| !! | AAAATAATATCACTATGTGA+TGG | - | chr1.4:77933274-77933293 | None:intergenic | 20.0% |
| !! | ATGAATATATAAACAATGGA+AGG | - | chr1.4:77933953-77933972 | None:intergenic | 20.0% |
| !! | GTCATATTTATTGATCAAAT+AGG | - | chr1.4:77933670-77933689 | None:intergenic | 20.0% |
| !! | TAACGTAATGAGTAAAAAAA+TGG | + | chr1.4:77932679-77932698 | MS.gene061163:intron | 20.0% |
| !! | TAGTTAGTTAGTTAGTTATT+TGG | + | chr1.4:77932975-77932994 | MS.gene061163:intron | 20.0% |
| !! | TGAATATATAAACAATGGAA+GGG | - | chr1.4:77933952-77933971 | None:intergenic | 20.0% |
| !!! | ATTTTTATAGTTGAGAAAAG+GGG | + | chr1.4:77933971-77933990 | MS.gene061163:intron | 20.0% |
| !!! | CATTTTTATAGTTGAGAAAA+GGG | + | chr1.4:77933970-77933989 | MS.gene061163:intron | 20.0% |
| !!! | TCATTTTTATAGTTGAGAAA+AGG | + | chr1.4:77933969-77933988 | MS.gene061163:intron | 20.0% |
| !!! | TCTTATATATGTTACTTATG+TGG | - | chr1.4:77932643-77932662 | None:intergenic | 20.0% |
| !!! | TGACAGTTATTTTTAAAAAG+CGG | + | chr1.4:77934051-77934070 | MS.gene061163:intron | 20.0% |
| !!! | TTAGTCTATTCTGAAATTTA+TGG | + | chr1.4:77933119-77933138 | MS.gene061163:intron | 20.0% |
| !!! | TTTGAGTCTTAATTTTCTAT+TGG | - | chr1.4:77934243-77934262 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTCTAACTGTTAA+AGG | + | chr1.4:77933735-77933754 | MS.gene061163:intron | 20.0% |
| ! | AAAACCAAACTTAATGAACT+CGG | - | chr1.4:77933497-77933516 | None:intergenic | 25.0% |
| ! | AACAAAGGTGGAAAATTATA+AGG | + | chr1.4:77932103-77932122 | MS.gene061163:CDS | 25.0% |
| ! | AAGATAAAGCTCAAATTCAA+AGG | - | chr1.4:77932506-77932525 | None:intergenic | 25.0% |
| ! | AAGTTTAACTGAAGAGAATA+GGG | + | chr1.4:77932169-77932188 | MS.gene061163:CDS | 25.0% |
| ! | ATAGTATGATATGTTCTTAC+TGG | + | chr1.4:77934094-77934113 | MS.gene061163:intron | 25.0% |
| ! | ATCACGTACATTTAACAAAA+GGG | + | chr1.4:77932810-77932829 | MS.gene061163:intron | 25.0% |
| ! | GAAAAAAGAGAGAAACAAAA+AGG | + | chr1.4:77932835-77932854 | MS.gene061163:intron | 25.0% |
| ! | GTGAATTCAACATAGTTATA+TGG | - | chr1.4:77933243-77933262 | None:intergenic | 25.0% |
| ! | GTTACTTATGTGGTATAAAT+GGG | - | chr1.4:77932633-77932652 | None:intergenic | 25.0% |
| ! | TAATGTTTGAATGTTCCATT+AGG | + | chr1.4:77934166-77934185 | MS.gene061163:intron | 25.0% |
| ! | TATCACGTACATTTAACAAA+AGG | + | chr1.4:77932809-77932828 | MS.gene061163:intron | 25.0% |
| ! | TGAATCCTTCATTTCAATAA+AGG | + | chr1.4:77931926-77931945 | MS.gene061163:CDS | 25.0% |
| ! | TGGAAAATTATAAGGAGTTA+AGG | + | chr1.4:77932111-77932130 | MS.gene061163:CDS | 25.0% |
| ! | TTAAAAAGCGGTGATAATAT+AGG | + | chr1.4:77934063-77934082 | MS.gene061163:intron | 25.0% |
| ! | TTACTTATGTGGTATAAATG+GGG | - | chr1.4:77932632-77932651 | None:intergenic | 25.0% |
| ! | TTATAAGGAGTTAAGGAAAA+AGG | + | chr1.4:77932118-77932137 | MS.gene061163:CDS | 25.0% |
| ! | TTCTATGGAATGTGTTAAAA+GGG | - | chr1.4:77932574-77932593 | None:intergenic | 25.0% |
| ! | TTGAGAAAGAAGAGAAAAAT+GGG | + | chr1.4:77931886-77931905 | MS.gene061163:CDS | 25.0% |
| !! | TGTTACTTATGTGGTATAAA+TGG | - | chr1.4:77932634-77932653 | None:intergenic | 25.0% |
| !! | TTCTTTTTATTGATATGGCA+AGG | - | chr1.4:77933894-77933913 | None:intergenic | 25.0% |
| !!! | AAATTTATGGTCATTTTCCA+AGG | + | chr1.4:77933132-77933151 | MS.gene061163:intron | 25.0% |
| !!! | GGATATTAATAACTTGCTTA+GGG | + | chr1.4:77932190-77932209 | MS.gene061163:CDS | 25.0% |
| AATAATGTGCAATCAATGGA+TGG | + | chr1.4:77932341-77932360 | MS.gene061163:CDS | 30.0% | |
| AATCAAAGAAACAGAAGAAG+AGG | + | chr1.4:77933777-77933796 | MS.gene061163:CDS | 30.0% | |
| AGAAAAATGGGATGATGTTA+AGG | + | chr1.4:77931898-77931917 | MS.gene061163:CDS | 30.0% | |
| AGAAAACAAACTCTACATCA+AGG | + | chr1.4:77933602-77933621 | MS.gene061163:CDS | 30.0% | |
| AGAGTAAAAGAGAGTTTAGA+GGG | + | chr1.4:77931960-77931979 | MS.gene061163:CDS | 30.0% | |
| ATTATTATGAACTTCATGCC+AGG | + | chr1.4:77933526-77933545 | MS.gene061163:intron | 30.0% | |
| CAAGTTTAACTGAAGAGAAT+AGG | + | chr1.4:77932168-77932187 | MS.gene061163:CDS | 30.0% | |
| CTAGAACTCAATCTAAAAAC+TGG | - | chr1.4:77934446-77934465 | None:intergenic | 30.0% | |
| CTTCTATGGAATGTGTTAAA+AGG | - | chr1.4:77932575-77932594 | None:intergenic | 30.0% | |
| CTTTATCTGAATGAAGACTA+TGG | - | chr1.4:77931788-77931807 | None:intergenic | 30.0% | |
| CTTTCTTGGAAGAAAAAACT+CGG | - | chr1.4:77932776-77932795 | None:intergenic | 30.0% | |
| GAAAAATGGGATGATGTTAA+GGG | + | chr1.4:77931899-77931918 | MS.gene061163:CDS | 30.0% | |
| GCATAATTCATTCATTTGCA+AGG | + | chr1.4:77933305-77933324 | MS.gene061163:intron | 30.0% | |
| GCATTGGAGAAGAAAATAAA+GGG | + | chr1.4:77932233-77932252 | MS.gene061163:CDS | 30.0% | |
| GGAATCCTTTATTGAAATGA+AGG | - | chr1.4:77931934-77931953 | None:intergenic | 30.0% | |
| GTTGAGAAAGAAGAGAAAAA+TGG | + | chr1.4:77931885-77931904 | MS.gene061163:CDS | 30.0% | |
| TAAAGGGACATGATCATAAA+AGG | + | chr1.4:77932249-77932268 | MS.gene061163:CDS | 30.0% | |
| TAACACATTCCATAGAAGAT+GGG | + | chr1.4:77932577-77932596 | MS.gene061163:intron | 30.0% | |
| TAGAGTAAAAGAGAGTTTAG+AGG | + | chr1.4:77931959-77931978 | MS.gene061163:CDS | 30.0% | |
| TCACGTACATTTAACAAAAG+GGG | + | chr1.4:77932811-77932830 | MS.gene061163:intron | 30.0% | |
| TGGTAATAATGTGCAATCAA+TGG | + | chr1.4:77932337-77932356 | MS.gene061163:CDS | 30.0% | |
| TGTAATCTACTTCTTGCAAA+AGG | + | chr1.4:77933096-77933115 | MS.gene061163:intron | 30.0% | |
| TTAACACATTCCATAGAAGA+TGG | + | chr1.4:77932576-77932595 | MS.gene061163:intron | 30.0% | |
| TTCTCAATTGAGTGATTTCA+AGG | - | chr1.4:77933192-77933211 | None:intergenic | 30.0% | |
| TTTCTTGGAAGAAAAAACTC+GGG | - | chr1.4:77932775-77932794 | None:intergenic | 30.0% | |
| ! | ACTCTCTTTTACTCTAGATA+AGG | - | chr1.4:77931955-77931974 | None:intergenic | 30.0% |
| ! | AGAGAAGCTAGTTTCTTATA+TGG | + | chr1.4:77933014-77933033 | MS.gene061163:intron | 30.0% |
| ! | ATTGTTGAGTTTGTACTGAT+TGG | - | chr1.4:77931733-77931752 | None:intergenic | 30.0% |
| ! | GTACATGTAATGGAACTTAT+AGG | + | chr1.4:77932709-77932728 | MS.gene061163:intron | 30.0% |
| ! | TAGAGAGTATGTGTATACAT+AGG | + | chr1.4:77933042-77933061 | MS.gene061163:intron | 30.0% |
| !! | AATATTGCTACCTCTAGAAT+TGG | + | chr1.4:77934467-77934486 | MS.gene061163:CDS | 30.0% |
| !! | GAGTTCATTAAGTTTGGTTT+TGG | + | chr1.4:77933496-77933515 | MS.gene061163:intron | 30.0% |
| !! | GGGATATTAATAACTTGCTT+AGG | + | chr1.4:77932189-77932208 | MS.gene061163:CDS | 30.0% |
| !!! | AACTGTTTTGAGAGAAAAAC+AGG | + | chr1.4:77931821-77931840 | MS.gene061163:CDS | 30.0% |
| AAAAAGCTAGTGAGAAAGAG+AGG | - | chr1.4:77933713-77933732 | None:intergenic | 35.0% | |
| AAGAGGCAAGGTTAATATCA+AGG | + | chr1.4:77932063-77932082 | MS.gene061163:CDS | 35.0% | |
| ACAAGAACTGCAGAAAACAA+AGG | + | chr1.4:77934202-77934221 | MS.gene061163:CDS | 35.0% | |
| ACATCCTAACACAATACTTC+CGG | - | chr1.4:77932914-77932933 | None:intergenic | 35.0% | |
| ACTGATAGTAGCAGTATTAC+CGG | + | chr1.4:77932892-77932911 | MS.gene061163:intron | 35.0% | |
| AGAAGATAGAGAGAGAATCT+TGG | + | chr1.4:77933629-77933648 | MS.gene061163:CDS | 35.0% | |
| AGAGTTAAGTGATGAATCGA+CGG | + | chr1.4:77932028-77932047 | MS.gene061163:CDS | 35.0% | |
| AGCTTGTGAATTGGAAGTTA+AGG | + | chr1.4:77933816-77933835 | MS.gene061163:CDS | 35.0% | |
| AGTTTGGATTGCAGAAAGTT+GGG | + | chr1.4:77932294-77932313 | MS.gene061163:CDS | 35.0% | |
| ATCACAAGAGAACACTTTCT+TGG | - | chr1.4:77932790-77932809 | None:intergenic | 35.0% | |
| CAAGAACTGCAGAAAACAAA+GGG | + | chr1.4:77934203-77934222 | MS.gene061163:CDS | 35.0% | |
| CACTCAATTGAGAAGATCTT+TGG | + | chr1.4:77933198-77933217 | MS.gene061163:CDS | 35.0% | |
| CATACCGAGTTCATTAAGTT+TGG | + | chr1.4:77933490-77933509 | MS.gene061163:intron | 35.0% | |
| CTAGAATTGGAAATGCCAAA+AGG | + | chr1.4:77934480-77934499 | MS.gene061163:CDS | 35.0% | |
| CTCAAAACAGTTTCAGAGTA+AGG | - | chr1.4:77931813-77931832 | None:intergenic | 35.0% | |
| GAAAAACAGGATGTATTGGA+TGG | + | chr1.4:77931834-77931853 | MS.gene061163:CDS | 35.0% | |
| GAGAGAAAAACAGGATGTAT+TGG | + | chr1.4:77931830-77931849 | MS.gene061163:CDS | 35.0% | |
| GTCACATACTCAATTCTTGT+TGG | - | chr1.4:77934035-77934054 | None:intergenic | 35.0% | |
| TGAAGAAAGGATTGCATTTC+TGG | - | chr1.4:77934512-77934531 | None:intergenic | 35.0% | |
| TGAAGTGGAAGTTGTTAGTT+TGG | + | chr1.4:77932400-77932419 | MS.gene061163:CDS | 35.0% | |
| TGCAAGGAAGTGAATGAAAA+AGG | + | chr1.4:77933321-77933340 | MS.gene061163:intron | 35.0% | |
| TGTATTGGATGGAAATGAAG+CGG | + | chr1.4:77931845-77931864 | MS.gene061163:CDS | 35.0% | |
| TGTCTAACTGTTAAAGGTAG+AGG | + | chr1.4:77933741-77933760 | MS.gene061163:intron | 35.0% | |
| TGTTTGAATGTTCCATTAGG+TGG | + | chr1.4:77934169-77934188 | MS.gene061163:intron | 35.0% | |
| TTCCATAGAAGATGGGAAAA+TGG | + | chr1.4:77932584-77932603 | MS.gene061163:intron | 35.0% | |
| TTTATCTTGTGTCTCGCATA+GGG | + | chr1.4:77932518-77932537 | MS.gene061163:intron | 35.0% | |
| TTTGGCATTTCCAATTCTAG+AGG | - | chr1.4:77934480-77934499 | None:intergenic | 35.0% | |
| ! | AAGCATGAAGCATTTGTGAA+AGG | - | chr1.4:77933372-77933391 | None:intergenic | 35.0% |
| ! | AGCATGAAGCATTTGTGAAA+GGG | - | chr1.4:77933371-77933390 | None:intergenic | 35.0% |
| ! | CTCGGTATGATTTTGAACTA+TGG | - | chr1.4:77933479-77933498 | None:intergenic | 35.0% |
| ! | GAAGATCTTTGGAAGAATCT+AGG | + | chr1.4:77933209-77933228 | MS.gene061163:CDS | 35.0% |
| ! | GGCATTGGAGAAGAAAATAA+AGG | + | chr1.4:77932232-77932251 | MS.gene061163:CDS | 35.0% |
| ! | TACCATTTTCCCATCTTCTA+TGG | - | chr1.4:77932589-77932608 | None:intergenic | 35.0% |
| ! | TAGGGCATTTAAGTTCCAAT+AGG | + | chr1.4:77932536-77932555 | MS.gene061163:intron | 35.0% |
| ! | TGTCAGAGAAATAGTTTGTG+AGG | + | chr1.4:77932001-77932020 | MS.gene061163:CDS | 35.0% |
| !! | AGTTTGTACTGATTGGAAGA+TGG | - | chr1.4:77931726-77931745 | None:intergenic | 35.0% |
| !! | ATTACCGGAAGTATTGTGTT+AGG | + | chr1.4:77932907-77932926 | MS.gene061163:intron | 35.0% |
| !! | GTTTGTACTGATTGGAAGAT+GGG | - | chr1.4:77931725-77931744 | None:intergenic | 35.0% |
| !!! | CATTTCTGGTATCATCCTTT+TGG | - | chr1.4:77934498-77934517 | None:intergenic | 35.0% |
| AACTCAGCAAACTGCAAAAG+TGG | - | chr1.4:77932278-77932297 | None:intergenic | 40.0% | |
| AATATCAAGGCTTGCAACTG+AGG | + | chr1.4:77932076-77932095 | MS.gene061163:CDS | 40.0% | |
| ACTATGGTCAGAAACTTCAG+AGG | - | chr1.4:77931772-77931791 | None:intergenic | 40.0% | |
| ACTCAAAGAAGAGCTAGCAA+TGG | + | chr1.4:77934256-77934275 | MS.gene061163:CDS | 40.0% | |
| AGAGAGTTTAGAGGGAGAAA+AGG | + | chr1.4:77931968-77931987 | MS.gene061163:CDS | 40.0% | |
| AGTTGGGTTTGGATTCATGA+TGG | + | chr1.4:77932310-77932329 | MS.gene061163:CDS | 40.0% | |
| ATCAATGGATGGTACTTCTG+AGG | + | chr1.4:77932352-77932371 | MS.gene061163:CDS | 40.0% | |
| ATGGAAGGAAGCTTGTGAAT+TGG | + | chr1.4:77933807-77933826 | MS.gene061163:CDS | 40.0% | |
| CATTATCCTTTCCACTGTTG+AGG | - | chr1.4:77933158-77933177 | None:intergenic | 40.0% | |
| CTCAATCTAAAAACTGGCCA+TGG | - | chr1.4:77934440-77934459 | None:intergenic | 40.0% | |
| CTTTATCTTGTGTCTCGCAT+AGG | + | chr1.4:77932517-77932536 | MS.gene061163:intron | 40.0% | |
| GAAAAAGGAGAAGAGAGAGT+TGG | + | chr1.4:77932133-77932152 | MS.gene061163:CDS | 40.0% | |
| GAGTTTGGATTGCAGAAAGT+TGG | + | chr1.4:77932293-77932312 | MS.gene061163:CDS | 40.0% | |
| GATGGGAAAATGGTACATGT+AGG | + | chr1.4:77932594-77932613 | MS.gene061163:intron | 40.0% | |
| GGGTAACAATGTACACCTAT+TGG | - | chr1.4:77932554-77932573 | None:intergenic | 40.0% | |
| GTTGGGTTTGGATTCATGAT+GGG | + | chr1.4:77932311-77932330 | MS.gene061163:CDS | 40.0% | |
| TGTGAATTGGAAGTTAAGGC+TGG | + | chr1.4:77933820-77933839 | MS.gene061163:CDS | 40.0% | |
| TTGAAGCTAGCTGATAGTAG+AGG | + | chr1.4:77934314-77934333 | MS.gene061163:CDS | 40.0% | |
| ! | GATTGAAGAGCGTGACAAAA+TGG | + | chr1.4:77933852-77933871 | MS.gene061163:CDS | 40.0% |
| ! | TCAGAAACTTCAGAGGTGTA+GGG | - | chr1.4:77931765-77931784 | None:intergenic | 40.0% |
| ! | TGTTGTTATTGGAAGAGGCA+AGG | + | chr1.4:77932051-77932070 | MS.gene061163:CDS | 40.0% |
| ! | TTTGTTGGAGAAAGAGGCAT+TGG | + | chr1.4:77932217-77932236 | MS.gene061163:CDS | 40.0% |
| ! | TTTGTTTCTCTGTGAGACAC+TGG | - | chr1.4:77933569-77933588 | None:intergenic | 40.0% |
| !! | TGAATCGACGGTGTTGTTAT+TGG | + | chr1.4:77932040-77932059 | MS.gene061163:CDS | 40.0% |
| !!! | CTTTTGCAGTTTGCTGAGTT+TGG | + | chr1.4:77932278-77932297 | MS.gene061163:CDS | 40.0% |
| AACTGAGGTGGAAACAAAGG+TGG | + | chr1.4:77932091-77932110 | MS.gene061163:CDS | 45.0% | |
| AAGCGAGTCGACGTATATGT+TGG | + | chr1.4:77934414-77934433 | MS.gene061163:CDS | 45.0% | |
| AGAAGAGGTAGCTAGATGGA+AGG | + | chr1.4:77933792-77933811 | MS.gene061163:CDS | 45.0% | |
| AGATAGCAGTGAGTGTGAAG+TGG | + | chr1.4:77932385-77932404 | MS.gene061163:CDS | 45.0% | |
| CAGAAGAAGAGGTAGCTAGA+TGG | + | chr1.4:77933788-77933807 | MS.gene061163:CDS | 45.0% | |
| CTCTGATTCCTCTAGTTGTC+TGG | - | chr1.4:77934372-77934391 | None:intergenic | 45.0% | |
| CTGATTGGAAGATGGGTGAT+AGG | - | chr1.4:77931718-77931737 | None:intergenic | 45.0% | |
| GGAACTAACCAGACAACTAG+AGG | + | chr1.4:77934361-77934380 | MS.gene061163:CDS | 45.0% | |
| GGATTGCAGAAAGTTGGGTT+TGG | + | chr1.4:77932299-77932318 | MS.gene061163:CDS | 45.0% | |
| GTAGAGGAGTTGAACTTCGT+CGG | + | chr1.4:77934330-77934349 | MS.gene061163:CDS | 45.0% | |
| TGCAACTGAGGTGGAAACAA+AGG | + | chr1.4:77932088-77932107 | MS.gene061163:CDS | 45.0% | |
| TGGCAGCACTGTACATGTAA+TGG | + | chr1.4:77932699-77932718 | MS.gene061163:intron | 45.0% | |
| ! | ATTTTCCAAGGCCTCAACAG+TGG | + | chr1.4:77933144-77933163 | MS.gene061163:intron | 45.0% |
| ! | CTTGCTTAGGGTTGCTTTGT+TGG | + | chr1.4:77932202-77932221 | MS.gene061163:CDS | 45.0% |
| ! | GGTTGCTTTGTTGGAGAAAG+AGG | + | chr1.4:77932211-77932230 | MS.gene061163:CDS | 45.0% |
| ! | GTCAGAAACTTCAGAGGTGT+AGG | - | chr1.4:77931766-77931785 | None:intergenic | 45.0% |
| ! | TCAGAGGTGTAGGGTGAATT+TGG | - | chr1.4:77931756-77931775 | None:intergenic | 45.0% |
| ! | TTTGGATTCATGATGGGAGG+TGG | + | chr1.4:77932317-77932336 | MS.gene061163:CDS | 45.0% |
| !! | GACGGTGTTGTTATTGGAAG+AGG | + | chr1.4:77932046-77932065 | MS.gene061163:CDS | 45.0% |
| !! | GCAGAAAACAAAGGGTGCTT+TGG | + | chr1.4:77934211-77934230 | MS.gene061163:CDS | 45.0% |
| AATGGCTGCAATAGCTGCAC+GGG | + | chr1.4:77934274-77934293 | MS.gene061163:CDS | 50.0% | |
| ATCAAGGCTTGCAACTGAGG+TGG | + | chr1.4:77932079-77932098 | MS.gene061163:CDS | 50.0% | |
| CAATGGCTGCAATAGCTGCA+CGG | + | chr1.4:77934273-77934292 | MS.gene061163:CDS | 50.0% | |
| GTCGACGTATATGTTGGCCA+TGG | + | chr1.4:77934420-77934439 | MS.gene061163:CDS | 50.0% | |
| GTTTCAGTGCAGCCACCTAA+TGG | - | chr1.4:77934184-77934203 | None:intergenic | 50.0% | |
| GTTTCTCTGTGAGACACTGG+AGG | - | chr1.4:77933566-77933585 | None:intergenic | 50.0% | |
| TGAACTTCGTCGGCAGATAG+AGG | + | chr1.4:77934340-77934359 | MS.gene061163:CDS | 50.0% | |
| ! | GGGTTTGGATTCATGATGGG+AGG | + | chr1.4:77932314-77932333 | MS.gene061163:CDS | 50.0% |
| CCAAGGCCTCAACAGTGGAA+AGG | + | chr1.4:77933149-77933168 | MS.gene061163:intron | 55.0% | |
| CCTTTCCACTGTTGAGGCCT+TGG | - | chr1.4:77933152-77933171 | None:intergenic | 55.0% | |
| CTGCACGGGAAGCAGCAGAG+AGG | + | chr1.4:77934288-77934307 | MS.gene061163:CDS | 65.0% | |
| ! | GAGGCGCTCTGTGTCTGACC+TGG | - | chr1.4:77933547-77933566 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 77931705 | 77934535 | 77931705 | ID=MS.gene061163 |
| chr1.4 | mRNA | 77931705 | 77934535 | 77931705 | ID=MS.gene061163.t1;Parent=MS.gene061163 |
| chr1.4 | exon | 77931705 | 77932421 | 77931705 | ID=MS.gene061163.t1.exon1;Parent=MS.gene061163.t1 |
| chr1.4 | CDS | 77931705 | 77932421 | 77931705 | ID=cds.MS.gene061163.t1;Parent=MS.gene061163.t1 |
| chr1.4 | exon | 77933154 | 77933230 | 77933154 | ID=MS.gene061163.t1.exon2;Parent=MS.gene061163.t1 |
| chr1.4 | CDS | 77933154 | 77933230 | 77933154 | ID=cds.MS.gene061163.t1;Parent=MS.gene061163.t1 |
| chr1.4 | exon | 77933548 | 77933659 | 77933548 | ID=MS.gene061163.t1.exon3;Parent=MS.gene061163.t1 |
| chr1.4 | CDS | 77933548 | 77933659 | 77933548 | ID=cds.MS.gene061163.t1;Parent=MS.gene061163.t1 |
| chr1.4 | exon | 77933757 | 77933873 | 77933757 | ID=MS.gene061163.t1.exon4;Parent=MS.gene061163.t1 |
| chr1.4 | CDS | 77933757 | 77933873 | 77933757 | ID=cds.MS.gene061163.t1;Parent=MS.gene061163.t1 |
| chr1.4 | exon | 77934188 | 77934535 | 77934188 | ID=MS.gene061163.t1.exon5;Parent=MS.gene061163.t1 |
| chr1.4 | CDS | 77934188 | 77934535 | 77934188 | ID=cds.MS.gene061163.t1;Parent=MS.gene061163.t1 |
| Gene Sequence |
| Protein sequence |
