AlfalfaGEDB | MS.gene49283

M. sativa cultivar XinJiangDaYe / MS.gene49283

KEGG: K06636
GO: -
PFAM: PF02463.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49283.t1	RHN80033.1	90.6	254	24	0	1	254	354	607	9.30E-124	453

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49283.t1	Q6Q1P4	80.8	255	47	2	1	254	949	1202	8.0e-100	364.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49283.t1	A0A072VWQ4	90.6	254	24	0	1	254	947	1200	6.7e-124	453.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene49283	0.821906	3.15E-53	-1.69E-46
MS.gene049159	MS.gene49283	0.845793	3.25E-59	-1.69E-46
MS.gene049254	MS.gene49283	0.83763	4.64E-57	-1.69E-46
MS.gene049272	MS.gene49283	0.806708	7.22E-50	-1.69E-46
MS.gene049343	MS.gene49283	0.829151	6.04E-55	-1.69E-46
MS.gene049368	MS.gene49283	0.808868	2.51E-50	-1.69E-46
MS.gene049404	MS.gene49283	0.826417	2.74E-54	-1.69E-46
MS.gene049435	MS.gene49283	0.801712	7.91E-49	-1.69E-46
MS.gene049452	MS.gene49283	0.836521	8.91E-57	-1.69E-46
MS.gene049501	MS.gene49283	0.810724	1.00E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49283.t1	MTR_1g069910	97.638	254	6	0	1	254	947	1200	7.99e-178	521
MS.gene49283.t1	MTR_0003s0460	77.381	252	56	1	1	252	940	1190	4.16e-134	407
MS.gene49283.t1	MTR_8g072890	33.654	208	119	3	43	250	1023	1211	2.46e-36	136
MS.gene49283.t1	MTR_7g091430	31.250	208	118	4	43	250	647	829	5.60e-29	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49283.t1	AT3G54670	80.392	255	48	2	1	254	949	1202	1.87e-141	427
MS.gene49283.t1	AT5G48600	31.687	243	140	5	11	250	999	1218	1.59e-37	140
MS.gene49283.t1	AT5G48600	31.687	243	140	5	11	250	1002	1221	1.69e-37	140
MS.gene49283.t1	AT2G27170	54.902	51	23	0	158	208	1096	1146	4.09e-11	63.2
MS.gene49283.t1	AT2G27170	54.902	51	23	0	158	208	1096	1146	4.09e-11	63.2

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Find 53 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCAACACACATCCTC+TGG	0.440601	1.1:+52030593	MS.gene49283:CDS
AACAAAGCGGTTCCGCGACA+TGG	0.521116	1.1:+52030692	MS.gene49283:CDS
AAGAACAGCACCAAATTTGA+AGG	0.485908	1.1:+52028856	MS.gene49283:CDS
AAGAGCAACACACATCCTCT+GGG	0.604669	1.1:+52030594	MS.gene49283:CDS
AAGATAGGAGACAATCTGAC+AGG	0.515528	1.1:+52028777	MS.gene49283:CDS
AAGCGTTAGTTGGGGTTTAC+AGG	0.284648	1.1:+52032431	MS.gene49283:CDS
AATACTCTGAAAACCAGATC+CGG	0.539223	1.1:-52032371	None:intergenic
ACAAAGCTGAAGCGTTAGTT+GGG	0.423474	1.1:+52032422	MS.gene49283:CDS
ACTAATCAGGATGCTGATGC+CGG	0.528971	1.1:+52032352	MS.gene49283:CDS
AGATAGGAGACAATCTGACA+GGG	0.623128	1.1:+52028778	MS.gene49283:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGAAATTAAGGAGC+AGG	-	chr1.1:52030177-52030196	None:intergenic	30.0%
AAATAAAACCTATGACGGTT+AGG	-	chr1.1:52029663-52029682	None:intergenic	30.0%
AACAAGGTAAAAACAATGGA+TGG	-	chr1.1:52032029-52032048	None:intergenic	30.0%
ACTTCATCCAGTATGAAAAA+TGG	-	chr1.1:52032256-52032275	None:intergenic	30.0%
AGAGTCAACAAGTAAAATCT+GGG	+	chr1.1:52031617-52031636	MS.gene49283:intron	30.0%
AGCTTATCAAAGTCAAAAAC+TGG	-	chr1.1:52028743-52028762	None:intergenic	30.0%
ATGGCAATCGTTAAAAAATC+CGG	-	chr1.1:52029442-52029461	None:intergenic	30.0%
ATTCGTTCAAAATCTTGTGA+AGG	+	chr1.1:52032322-52032341	MS.gene49283:CDS	30.0%
CAAACATCTCACAATAAACA+TGG	+	chr1.1:52031807-52031826	MS.gene49283:intron	30.0%
CTTATAAAATTCCAGCCATT+CGG	+	chr1.1:52031038-52031057	MS.gene49283:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	52028713	52032467	52028713	ID=MS.gene49283
chr1.1	mRNA	52028713	52032467	52028713	ID=MS.gene49283.t1;Parent=MS.gene49283
chr1.1	exon	52028713	52028996	52028713	ID=MS.gene49283.t1.exon1;Parent=MS.gene49283.t1
chr1.1	CDS	52028713	52028996	52028713	ID=cds.MS.gene49283.t1;Parent=MS.gene49283.t1
chr1.1	exon	52030524	52030775	52030524	ID=MS.gene49283.t1.exon2;Parent=MS.gene49283.t1
chr1.1	CDS	52030524	52030775	52030524	ID=cds.MS.gene49283.t1;Parent=MS.gene49283.t1
chr1.1	exon	52032240	52032467	52032240	ID=MS.gene49283.t1.exon3;Parent=MS.gene49283.t1
chr1.1	CDS	52032240	52032467	52032240	ID=cds.MS.gene49283.t1;Parent=MS.gene49283.t1

Gene Sequence

>MS.gene49283

ATGGATACTGATACTTCAACACCGGGTCCAGTTTTTGACTTTGATAAGCTCAGTAGAACACTAAAAGATAGGAGACAATCTGACAGGGGTAAAATAGAGGTAGACTTTAAGCAAAAAATGGATGCATTGGTATCTGAGATCGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTCTACTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGAAGGAAAAAGCCGATAGATTTAATGAAGTAAAGCAGAAGAGGTGCAATATTTTTTTTCCTTTCACTTTGTCATTATTTGTCTTATTTATAATATTAGTACATAGCCGATAGTTTGGGCATGTATGGTTTTGGGTGTTCAACTCCATAGCTTCTTTGTGCACTCCGGCTGCTATTGTGGTGAAAATTGCCGCTATAATCTCTACCTTGGCAAGCCCACACCATGAAATTGTGATGCGACATACATTAAATAGCCAGCCTGTGACAGCTCTGGCACAATAGTGCGACTATAGGGCCCTATTGCCAACTAGGGTATCATTTTTTTTTTTTGAGCAAGAACTTGGGTATCATTTGATGACTAATGACTTTAATAATTTGTTTGCTTATTGTTTAGTGAGGTAGTAGTTTATAACTTGCTTTAAGCTCCCTAGCTCTGAAACATGTTGTCACATATCGGTCATGGTTGCGTCATGGTGGATTGCGGTGCCGGATTTTTTAACGATTGCCATGGCCAATTCGGGAAGGATGGTGTTGCCATGGCGTGTTATGCAAGCTTTCTATGGCAGACTTTTAGCTTCCCATCATGGTCCACCATAAGGCATTGATAAATGAAACTTTTTCTGCGTTCATTTCCTCTAGGGGTGAGAATTGGTTGGGACAAGCAAGACTTTGCTTAGATAGTCCTTGCCTGTCAAAATAATCTAAGGCCTAACCGTCATAGGTTTTATTTTAAGCATGATTTGACCCGTTCAGAATGAACAAACTGAGCTTTATAGTCCAAGTTAATTTTTTATTTTTATTTTTTTATGATGTAAACATTTCAATAGTGTAACCCAATCTTCTTAGAAGTTTAATTGAGTGATTATTTTGTAACAAGGCATTTATAATTCTCTCATAAATGTATCCCTGAACAAGCTTATATGTTGAAGTTGAACTATCGTAATTAAATATTGATAAGGTCAATGAACATATGGTTTTAATCATAACTCTACTGCAATCATAACATCGAAGTTATTTTTTTTTATTTACTTGAATAGGCTGACCTGTTACGCTTGAAATGCATTTCAGATGACGTTACGTTTAACCTTTTTAGTTAAATAAATTGACTTAAAAATAGCTTTGACCTGGCTTGGGCCTAAAATAAGTCTAGCCTGATGTGGGCCTGATGTAGGCTAAGACTTAGCCGCTAAGTCATAGGCCCCCGTCGCTGACTGGTCTATTCCTGCTCCTTAATTTCATGTTTTTAGTTTTAATTTTAAAAATACCAGTTTTCATTTTGTTTCCTATATTTAAAGCCTTGCAGGAAAAACTACAAAAACAATATAAAGCCGTTTTTACTATAATGGAACAATTATTGGCCAGACTATACTTACCTCATGACCGAACTCCGGATTACCATGTCCCCTTTTCCTTGGGAACCAGAGGGTTAACACAAAAAAAAAAAAAAAAAAAAAGGAAAACAAGGAACTAAAAGAAACAATGTGTAATTTTTATAATTAGCTATATTTATATTCCGTTGTTTGTCATCTGCCTTTTTGTGAGTCCAGTGTTTATTTATATGTTGAATGCAGATATGATTTGTTCATGGAGGCTTTCAACCATATCGCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGAACTGCATACCTAAATTTGGAAAATGAAGACGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGCGACATGGAACAACTATCTGGCGGCGAAAAGACTGTTGCTGCGCTTGCGTTGCTGTTCTCCATCCACAGGTAGAGTTATTTGTACTTGTAGAATTTAAGATATCTTTCTAGTTGAGCATATTTGGTTTTGAGAAAATATATTTTGTTTTTTTACCTTTATTCATAAAGGGTGCCCCTAATATGGTCCCATTCAAAAAGGTCCACCGGTGAACCCATTATATCGTACCTGCTATAGCCGGTTATAACTTCTTTTTCTAATCTTATCTTTGTCCAATTTTATTCCCTTTTTTCTGCTACAATTTTCTACCCATGTGCAACAAACCCAAATGTTCTTATAAAATTCCAGCCATTCGGTGTTGCTATGGGAATTGGGGGTTGTGTTACATCCATGTTTGTGTAACTCGTGCGGATACATATGTGAGAAAATTCAATTTCTTTAGAAACTCGTGCAGAGGCATCATGCTTCTAAATTCTTCTACCTCAACCAACGGCGTCTGCTTCTTTGTATTGCCTCACCAGCTAATAAGAACTTTCTTCGCCACCGAATGGTAGAATTACTAGACGTTGGCCACCCGACAGAGTTCTAATAGGTGGCGATGTGGAGAGGAAGATGATTTAGAGGAAACGGAAGCAGATATCGGAGGATTGTGGAGGAAGTGAGAACTCTCTACGGCTTCGGAAGATTATTTATAACACGTAGGACTCATAGAATAATATACATGGTTATAATCAAGGAGTACATTTTTAATACGTATTTGTGGTTTAGGGATGAAGAATTGGTTATTACAGGAGGAATAAATAGAAATTATGTTTCCTGATAGCTTAACTGGGTACCTGTTGTGTTGCATGTGAAGTTAAAGAATAAAGGAGAGTCAACAAGTAAAATGAATGTGAAGTTAAAGAATAAAGGAGAGTCAACAAGTAAAATCTGGGTCATAACAAGTAAAAGTTTTCTGGTTCATTCGAAATCGCATGGATTGCTTAAAAAGTCTTCTACCAGGTTGATTCAATACATAATCATGATCTAAGCAAGACAACATTTCACTGAGAATAGTCAATCATATAAAATCCAAATAAATAGATTTAATCCATGTTTTGAACAAACATCTCACAATAAACATGGTCACTGAGATTGGTGGTGGTTGTGTAATGACGGTGACGGGCAATTGGGTGTGGTGATGGGAATAGAAGGGGAAGAAGAGGGGTACATCCGTATAAAGTAATAAATTTCTTTTCCTTAATGTGCCAACTGGTTTTTCAATGGTCCACCCATGAACCTTACTCTAACGGGTGCATATTAGGGGCTCCCAATCATAAAACCATCCATTGTTTTTACCTTGTTTTCTGTTTTCAAAGATTTGTATATGCAAACATGAAGACAATATGTTTGAACAATAATATTTTAGATGGTTGTTTAAATTTTGGGAAGAGTTCATTCAAGTAATAGACTGACACATCTTTGCCTAAAAATAGTTTGATGGAGATTTGGTCCACATGTCCATTAACATGGTTTCCACTTGCTTATATTTTCAGTTTTAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCAAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCAAGGACTAATCAGGATGCTGATGCCGGATCTGGTTTTCAGAGTATTGTAATATCTCTTAAAGACAGCTTCTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGGGACTCTGAAAGAGG

Protein sequence

>MS.gene49283.t1

MDTDTSTPGPVFDFDKLSRTLKDRRQSDRGKIEVDFKQKMDALVSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNEVKQKRYDLFMEAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTNQDADAGSGFQSIVISLKDSFYDKAEALVGVYRDSER