Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49283.t1 | RHN80033.1 | 90.6 | 254 | 24 | 0 | 1 | 254 | 354 | 607 | 9.30E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49283.t1 | Q6Q1P4 | 80.8 | 255 | 47 | 2 | 1 | 254 | 949 | 1202 | 8.0e-100 | 364.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49283.t1 | A0A072VWQ4 | 90.6 | 254 | 24 | 0 | 1 | 254 | 947 | 1200 | 6.7e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49283 | 0.821906 | 3.15E-53 | -1.69E-46 |
| MS.gene049159 | MS.gene49283 | 0.845793 | 3.25E-59 | -1.69E-46 |
| MS.gene049254 | MS.gene49283 | 0.83763 | 4.64E-57 | -1.69E-46 |
| MS.gene049272 | MS.gene49283 | 0.806708 | 7.22E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene49283 | 0.829151 | 6.04E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene49283 | 0.808868 | 2.51E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene49283 | 0.826417 | 2.74E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene49283 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene49283 | 0.836521 | 8.91E-57 | -1.69E-46 |
| MS.gene049501 | MS.gene49283 | 0.810724 | 1.00E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene49283 | 0.811444 | 6.98E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene49283 | 0.868568 | 5.93E-66 | -1.69E-46 |
| MS.gene049873 | MS.gene49283 | 0.822554 | 2.23E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene49283 | 0.803947 | 2.73E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene49283 | 0.816257 | 6.07E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene49283 | 0.844197 | 8.77E-59 | -1.69E-46 |
| MS.gene050355 | MS.gene49283 | 0.811273 | 7.60E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene49283 | 0.828336 | 9.51E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene49283 | 0.806792 | 6.93E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene49283 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene49283 | 0.815787 | 7.73E-52 | -1.69E-46 |
| MS.gene050799 | MS.gene49283 | 0.836794 | 7.59E-57 | -1.69E-46 |
| MS.gene050962 | MS.gene49283 | 0.805062 | 1.60E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene49283 | 0.817938 | 2.54E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene49283 | 0.802809 | 4.70E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene49283 | 0.823139 | 1.63E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene49283 | 0.805469 | 1.31E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene49283 | 0.838448 | 2.86E-57 | -1.69E-46 |
| MS.gene051800 | MS.gene49283 | 0.808755 | 2.65E-50 | -1.69E-46 |
| MS.gene051957 | MS.gene49283 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene49283 | 0.827458 | 1.55E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene49283 | 0.811229 | 7.77E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene49283 | 0.83261 | 8.57E-56 | -1.69E-46 |
| MS.gene052333 | MS.gene49283 | 0.816242 | 6.12E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene49283 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene49283 | 0.82764 | 1.40E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene49283 | 0.882741 | 8.08E-71 | -1.69E-46 |
| MS.gene052582 | MS.gene49283 | 0.835027 | 2.13E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene49283 | 0.83663 | 8.36E-57 | -1.69E-46 |
| MS.gene052611 | MS.gene49283 | 0.844626 | 6.73E-59 | -1.69E-46 |
| MS.gene052773 | MS.gene49283 | 0.831089 | 2.03E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene49283 | 0.859684 | 3.49E-63 | -1.69E-46 |
| MS.gene052867 | MS.gene49283 | 0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene49283 | 0.806972 | 6.35E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene49283 | 0.829207 | 5.86E-55 | -1.69E-46 |
| MS.gene053145 | MS.gene49283 | 0.823621 | 1.26E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene49283 | 0.842221 | 2.95E-58 | -1.69E-46 |
| MS.gene053221 | MS.gene49283 | 0.807637 | 4.59E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene49283 | 0.850082 | 2.14E-60 | -1.69E-46 |
| MS.gene053296 | MS.gene49283 | 0.804252 | 2.36E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene49283 | 0.809253 | 2.07E-50 | -1.69E-46 |
| MS.gene053900 | MS.gene49283 | 0.803314 | 3.70E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene49283 | 0.815423 | 9.32E-52 | -1.69E-46 |
| MS.gene053967 | MS.gene49283 | 0.83108 | 2.04E-55 | -1.69E-46 |
| MS.gene05414 | MS.gene49283 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene49283 | 0.826968 | 2.03E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene49283 | 0.846761 | 1.77E-59 | -1.69E-46 |
| MS.gene05423 | MS.gene49283 | 0.819145 | 1.35E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene49283 | -0.818722 | 1.69E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene49283 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene49283 | 0.852388 | 4.77E-61 | -1.69E-46 |
| MS.gene054651 | MS.gene49283 | 0.876293 | 1.57E-68 | -1.69E-46 |
| MS.gene054775 | MS.gene49283 | 0.81819 | 2.23E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene49283 | 0.822221 | 2.66E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene49283 | 0.817734 | 2.83E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene49283 | 0.814187 | 1.75E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene49283 | 0.802676 | 5.01E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene49283 | 0.820562 | 6.42E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene49283 | 0.814365 | 1.60E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene49283 | 0.817421 | 3.33E-52 | -1.69E-46 |
| MS.gene055589 | MS.gene49283 | 0.830402 | 3.00E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene49283 | 0.804514 | 2.08E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene49283 | 0.877509 | 5.93E-69 | -1.69E-46 |
| MS.gene055841 | MS.gene49283 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene49283 | 0.824408 | 8.20E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene49283 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene49283 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene49283 | 0.825233 | 5.24E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene49283 | 0.814958 | 1.18E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene49283 | 0.856493 | 3.10E-62 | -1.69E-46 |
| MS.gene056506 | MS.gene49283 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene49283 | 0.834205 | 3.43E-56 | -1.69E-46 |
| MS.gene056776 | MS.gene49283 | 0.808301 | 3.31E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene49283 | 0.807491 | 4.93E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene49283 | 0.816725 | 4.77E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene49283 | 0.842307 | 2.80E-58 | -1.69E-46 |
| MS.gene057060 | MS.gene49283 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene49283 | 0.828316 | 9.62E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene49283 | 0.816335 | 5.83E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene49283 | 0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene49283 | 0.830134 | 3.48E-55 | -1.69E-46 |
| MS.gene057855 | MS.gene49283 | 0.802107 | 6.56E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene49283 | 0.806281 | 8.88E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene49283 | 0.80692 | 6.51E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene49283 | 0.811492 | 6.81E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene49283 | 0.84448 | 7.37E-59 | -1.69E-46 |
| MS.gene058010 | MS.gene49283 | 0.833706 | 4.57E-56 | -1.69E-46 |
| MS.gene058037 | MS.gene49283 | 0.821487 | 3.93E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene49283 | 0.870566 | 1.32E-66 | -1.69E-46 |
| MS.gene058636 | MS.gene49283 | 0.818491 | 1.91E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene49283 | 0.837662 | 4.55E-57 | -1.69E-46 |
| MS.gene058829 | MS.gene49283 | 0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene49283 | 0.84918 | 3.82E-60 | -1.69E-46 |
| MS.gene059015 | MS.gene49283 | 0.810455 | 1.14E-50 | -1.69E-46 |
| MS.gene059151 | MS.gene49283 | 0.813864 | 2.06E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene49283 | 0.816461 | 5.46E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene49283 | 0.803626 | 3.19E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene49283 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene49283 | 0.803865 | 2.84E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene49283 | 0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene49283 | 0.826393 | 2.78E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene49283 | 0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene49283 | 0.845455 | 4.02E-59 | -1.69E-46 |
| MS.gene06052 | MS.gene49283 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene49283 | 0.833243 | 5.96E-56 | -1.69E-46 |
| MS.gene060678 | MS.gene49283 | 0.811879 | 5.61E-51 | -1.69E-46 |
| MS.gene060689 | MS.gene49283 | 0.820884 | 5.42E-53 | -1.69E-46 |
| MS.gene060781 | MS.gene49283 | 0.803754 | 3.00E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene49283 | 0.829731 | 4.37E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene49283 | 0.813929 | 2.00E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene49283 | -0.805124 | 1.55E-49 | -1.69E-46 |
| MS.gene061163 | MS.gene49283 | 0.815834 | 7.55E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49283.t1 | MTR_1g069910 | 97.638 | 254 | 6 | 0 | 1 | 254 | 947 | 1200 | 7.99e-178 | 521 |
| MS.gene49283.t1 | MTR_0003s0460 | 77.381 | 252 | 56 | 1 | 1 | 252 | 940 | 1190 | 4.16e-134 | 407 |
| MS.gene49283.t1 | MTR_8g072890 | 33.654 | 208 | 119 | 3 | 43 | 250 | 1023 | 1211 | 2.46e-36 | 136 |
| MS.gene49283.t1 | MTR_7g091430 | 31.250 | 208 | 118 | 4 | 43 | 250 | 647 | 829 | 5.60e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49283.t1 | AT3G54670 | 80.392 | 255 | 48 | 2 | 1 | 254 | 949 | 1202 | 1.87e-141 | 427 |
| MS.gene49283.t1 | AT5G48600 | 31.687 | 243 | 140 | 5 | 11 | 250 | 999 | 1218 | 1.59e-37 | 140 |
| MS.gene49283.t1 | AT5G48600 | 31.687 | 243 | 140 | 5 | 11 | 250 | 1002 | 1221 | 1.69e-37 | 140 |
| MS.gene49283.t1 | AT2G27170 | 54.902 | 51 | 23 | 0 | 158 | 208 | 1096 | 1146 | 4.09e-11 | 63.2 |
| MS.gene49283.t1 | AT2G27170 | 54.902 | 51 | 23 | 0 | 158 | 208 | 1096 | 1146 | 4.09e-11 | 63.2 |
Find 53 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCCAATGCCTTCAAATT+TGG | 0.217676 | 1.1:-52028866 | None:intergenic |
| TGGAACTGCATACCTAAATT+TGG | 0.275683 | 1.1:+52030617 | MS.gene49283:CDS |
| AAGCGTTAGTTGGGGTTTAC+AGG | 0.284648 | 1.1:+52032431 | MS.gene49283:CDS |
| TATCTATATTACCAGCGATA+TGG | 0.316547 | 1.1:-52030551 | None:intergenic |
| TTGAATGTTGCAAAGGTTGC+TGG | 0.339404 | 1.1:+52032295 | MS.gene49283:CDS |
| TCAGTAGAACACTAAAAGAT+AGG | 0.405647 | 1.1:+52028762 | MS.gene49283:CDS |
| CAGGATGCTGATGCCGGATC+TGG | 0.418635 | 1.1:+52032358 | MS.gene49283:CDS |
| TACTTCATGCCATGTAGAAA+TGG | 0.419004 | 1.1:-52030654 | None:intergenic |
| ACAAAGCTGAAGCGTTAGTT+GGG | 0.423474 | 1.1:+52032422 | MS.gene49283:CDS |
| TGAAGGAGCAAGGACTAATC+AGG | 0.426310 | 1.1:+52032339 | MS.gene49283:CDS |
| AGCACCAAATTTGAAGGCAT+TGG | 0.436906 | 1.1:+52028862 | MS.gene49283:CDS |
| ATGTCGCGGAACCGCTTTGT+TGG | 0.437758 | 1.1:-52030690 | None:intergenic |
| AAAGAGCAACACACATCCTC+TGG | 0.440601 | 1.1:+52030593 | MS.gene49283:CDS |
| ATGCAGATATGATTTGTTCA+TGG | 0.443391 | 1.1:+52030518 | MS.gene49283:intron |
| CTTTACTTCATTAAATCTAT+CGG | 0.445320 | 1.1:-52028966 | None:intergenic |
| CGCGACATGGAACAACTATC+TGG | 0.448520 | 1.1:+52030705 | MS.gene49283:CDS |
| CTGAAGAGTTTGAAGCTGTC+AGG | 0.450671 | 1.1:+52028924 | MS.gene49283:CDS |
| GACAAAGCTGAAGCGTTAGT+TGG | 0.453493 | 1.1:+52032421 | MS.gene49283:CDS |
| GAAGGCATTGGACCAGTATG+AGG | 0.474336 | 1.1:+52028874 | MS.gene49283:CDS |
| TCGCGGAACCGCTTTGTTGG+TGG | 0.475592 | 1.1:-52030687 | None:intergenic |
| TTTCAAGTAGAGCCTCATAC+TGG | 0.481506 | 1.1:-52028886 | None:intergenic |
| AAGAACAGCACCAAATTTGA+AGG | 0.485908 | 1.1:+52028856 | MS.gene49283:CDS |
| CGTTGCTGTTCTCCATCCAC+AGG | 0.511915 | 1.1:+52030754 | MS.gene49283:CDS |
| ATCTGACAGGGGTAAAATAG+AGG | 0.514488 | 1.1:+52028790 | MS.gene49283:CDS |
| AAGATAGGAGACAATCTGAC+AGG | 0.515528 | 1.1:+52028777 | MS.gene49283:CDS |
| AACAAAGCGGTTCCGCGACA+TGG | 0.521116 | 1.1:+52030692 | MS.gene49283:CDS |
| TTAATGAAGTAAAGCAGAAG+AGG | 0.525670 | 1.1:+52028975 | MS.gene49283:CDS |
| ACTAATCAGGATGCTGATGC+CGG | 0.528971 | 1.1:+52032352 | MS.gene49283:CDS |
| AATACTCTGAAAACCAGATC+CGG | 0.539223 | 1.1:-52032371 | None:intergenic |
| CAAAATCTTGTGAAGGAGCA+AGG | 0.545040 | 1.1:+52032329 | MS.gene49283:CDS |
| GGATGAAGTTGATGCTGCAT+TGG | 0.545341 | 1.1:+52032267 | MS.gene49283:CDS |
| ATTCGTTCAAAATCTTGTGA+AGG | 0.547590 | 1.1:+52032322 | MS.gene49283:CDS |
| GGATACTGATACTTCAACAC+CGG | 0.551459 | 1.1:+52028715 | MS.gene49283:CDS |
| AGCTGTCAGGAAAGAAGAGA+AGG | 0.559426 | 1.1:+52028937 | MS.gene49283:CDS |
| GTTTACAGGGACTCTGAAAG+AGG | 0.559697 | 1.1:+52032445 | MS.gene49283:CDS |
| AGCGTTAGTTGGGGTTTACA+GGG | 0.560955 | 1.1:+52032432 | MS.gene49283:CDS |
| CAAATAACTCTACCTGTGGA+TGG | 0.565775 | 1.1:-52030766 | None:intergenic |
| GAGGCTTTCAACCATATCGC+TGG | 0.578366 | 1.1:+52030540 | MS.gene49283:CDS |
| GTTGAAGTATCAGTATCCAT+AGG | 0.591631 | 1.1:-52028710 | None:intergenic |
| GGACAACTTGAATGTTGCAA+AGG | 0.602237 | 1.1:+52032288 | MS.gene49283:CDS |
| AAGAGCAACACACATCCTCT+GGG | 0.604669 | 1.1:+52030594 | MS.gene49283:CDS |
| CAGATATGATTTGTTCATGG+AGG | 0.608916 | 1.1:+52030521 | MS.gene49283:intron |
| CAAAGCTGAAGCGTTAGTTG+GGG | 0.618753 | 1.1:+52032423 | MS.gene49283:CDS |
| AGATAGGAGACAATCTGACA+GGG | 0.623128 | 1.1:+52028778 | MS.gene49283:CDS |
| CAGATAGTTGTTCCATGTCG+CGG | 0.630799 | 1.1:-52030704 | None:intergenic |
| TTTACAGGGACTCTGAAAGA+GGG | 0.636295 | 1.1:+52032446 | MS.gene49283:CDS |
| GAAGACGATCCATTTCTACA+TGG | 0.649820 | 1.1:+52030645 | MS.gene49283:CDS |
| GATACTGATACTTCAACACC+GGG | 0.653562 | 1.1:+52028716 | MS.gene49283:CDS |
| GACATGGAACAACTATCTGG+CGG | 0.679578 | 1.1:+52030708 | MS.gene49283:CDS |
| AGGTATGCAGTTCCACCCAG+AGG | 0.684147 | 1.1:-52030609 | None:intergenic |
| CTGCTATGCCACCAACAAAG+CGG | 0.697445 | 1.1:+52030679 | MS.gene49283:CDS |
| AGCAACACACATCCTCTGGG+TGG | 0.698547 | 1.1:+52030597 | MS.gene49283:CDS |
| GATAGGAGACAATCTGACAG+GGG | 0.715726 | 1.1:+52028779 | MS.gene49283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr1.1:52030386-52030405 | MS.gene49283:intron | 0.0% |
| !! | AAGAAATTTATTACTTTATA+CGG | - | chr1.1:52031920-52031939 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTTACTTGAAT+AGG | + | chr1.1:52029968-52029987 | MS.gene49283:intron | 10.0% |
| !! | AAAAAAAAAAAAGGAAAACA+AGG | + | chr1.1:52030395-52030414 | MS.gene49283:intron | 15.0% |
| !! | AAACTAAAAACATGAAATTA+AGG | - | chr1.1:52030183-52030202 | None:intergenic | 15.0% |
| !! | ATCGTAATTAAATATTGATA+AGG | + | chr1.1:52029889-52029908 | MS.gene49283:intron | 15.0% |
| !! | GTCAATTTATTTAACTAAAA+AGG | - | chr1.1:52030040-52030059 | None:intergenic | 15.0% |
| !!! | ATGGATTAAATCTATTTATT+TGG | - | chr1.1:52031779-52031798 | None:intergenic | 15.0% |
| !!! | TTGAACAATAATATTTTAGA+TGG | + | chr1.1:52032094-52032113 | MS.gene49283:intron | 15.0% |
| !!! | TTTTTACCTTTATTCATAAA+GGG | + | chr1.1:52030854-52030873 | MS.gene49283:intron | 15.0% |
| !!! | TTTTTTACCTTTATTCATAA+AGG | + | chr1.1:52030853-52030872 | MS.gene49283:intron | 15.0% |
| !! | AATATACATGGTTATAATCA+AGG | + | chr1.1:52031419-52031438 | MS.gene49283:intron | 20.0% |
| !! | AATGTGAAGTTAAAGAATAA+AGG | + | chr1.1:52031594-52031613 | MS.gene49283:intron | 20.0% |
| !! | CTTTACTTCATTAAATCTAT+CGG | - | chr1.1:52028969-52028988 | None:intergenic | 20.0% |
| !! | TTAGAAAAAGAAGTTATAAC+CGG | - | chr1.1:52030945-52030964 | None:intergenic | 20.0% |
| !! | TTCAACATATAAATAAACAC+TGG | - | chr1.1:52030499-52030518 | None:intergenic | 20.0% |
| !! | TTGTTCCATTATAGTAAAAA+CGG | - | chr1.1:52030284-52030303 | None:intergenic | 20.0% |
| !!! | AATTAAACTTCTAAGAAGAT+TGG | - | chr1.1:52029789-52029808 | None:intergenic | 20.0% |
| !!! | ACATTTTTAATACGTATTTG+TGG | + | chr1.1:52031445-52031464 | MS.gene49283:intron | 20.0% |
| !!! | ATTAAACTTCTAAGAAGATT+GGG | - | chr1.1:52029788-52029807 | None:intergenic | 20.0% |
| !!! | GGAATTTTATAAGAACATTT+GGG | - | chr1.1:52031031-52031050 | None:intergenic | 20.0% |
| !!! | TACTATAATGGAACAATTAT+TGG | + | chr1.1:52030288-52030307 | MS.gene49283:intron | 20.0% |
| !!! | TAGATGGTTGTTTAAATTTT+GGG | + | chr1.1:52032110-52032129 | MS.gene49283:intron | 20.0% |
| !!! | TGGAATTTTATAAGAACATT+TGG | - | chr1.1:52031032-52031051 | None:intergenic | 20.0% |
| !!! | TTAGATGGTTGTTTAAATTT+TGG | + | chr1.1:52032109-52032128 | MS.gene49283:intron | 20.0% |
| !!! | TTGCTTATATTTTCAGTTTT+AGG | + | chr1.1:52032224-52032243 | MS.gene49283:intron | 20.0% |
| ! | AAAAAAAATGATACCCTAGT+TGG | - | chr1.1:52029259-52029278 | None:intergenic | 25.0% |
| ! | AAAATAGTTTGATGGAGATT+TGG | + | chr1.1:52032173-52032192 | MS.gene49283:intron | 25.0% |
| ! | AAACTGAAAATATAAGCAAG+TGG | - | chr1.1:52032223-52032242 | None:intergenic | 25.0% |
| ! | ACAAATAATGACAAAGTGAA+AGG | - | chr1.1:52029016-52029035 | None:intergenic | 25.0% |
| ! | AGAAAACAAGGTAAAAACAA+TGG | - | chr1.1:52032033-52032052 | None:intergenic | 25.0% |
| ! | AGAAAATTGTAGCAGAAAAA+AGG | - | chr1.1:52030992-52031011 | None:intergenic | 25.0% |
| ! | ATAGGAAACAAAATGAAAAC+TGG | - | chr1.1:52030220-52030239 | None:intergenic | 25.0% |
| ! | CAGAAAAAAGGGAATAAAAT+TGG | - | chr1.1:52030980-52030999 | None:intergenic | 25.0% |
| ! | CATGTGAAGTTAAAGAATAA+AGG | + | chr1.1:52031552-52031571 | MS.gene49283:intron | 25.0% |
| ! | GAAAATTGTAGCAGAAAAAA+GGG | - | chr1.1:52030991-52031010 | None:intergenic | 25.0% |
| ! | GAAGATTATTTATAACACGT+AGG | + | chr1.1:52031385-52031404 | MS.gene49283:intron | 25.0% |
| ! | GACTCATAGAATAATATACA+TGG | + | chr1.1:52031407-52031426 | MS.gene49283:intron | 25.0% |
| ! | GCTTAAAATAAAACCTATGA+CGG | - | chr1.1:52029668-52029687 | None:intergenic | 25.0% |
| ! | TAATACGTATTTGTGGTTTA+GGG | + | chr1.1:52031452-52031471 | MS.gene49283:intron | 25.0% |
| ! | TTAATACGTATTTGTGGTTT+AGG | + | chr1.1:52031451-52031470 | MS.gene49283:intron | 25.0% |
| ! | TTTCATTTATCAATGCCTTA+TGG | - | chr1.1:52029547-52029566 | None:intergenic | 25.0% |
| ! | TTTGCCTAAAAATAGTTTGA+TGG | + | chr1.1:52032165-52032184 | MS.gene49283:intron | 25.0% |
| !! | ATCTTTGAAAACAGAAAACA+AGG | - | chr1.1:52032045-52032064 | None:intergenic | 25.0% |
| !! | CATAACAAGTAAAAGTTTTC+TGG | + | chr1.1:52031641-52031660 | MS.gene49283:intron | 25.0% |
| !!! | ATCTCCATCAAACTATTTTT+AGG | - | chr1.1:52032172-52032191 | None:intergenic | 25.0% |
| !!! | TAAAGCCGTTTTTACTATAA+TGG | + | chr1.1:52030276-52030295 | MS.gene49283:intron | 25.0% |
| !!! | TGAGTGATTATTTTGTAACA+AGG | + | chr1.1:52029808-52029827 | MS.gene49283:intron | 25.0% |
| !!! | TTTTTTTTGAGCAAGAACTT+GGG | + | chr1.1:52029275-52029294 | MS.gene49283:intron | 25.0% |
| !!! | TTTTTTTTTGAGCAAGAACT+TGG | + | chr1.1:52029274-52029293 | MS.gene49283:intron | 25.0% |
| AAAACATGAAATTAAGGAGC+AGG | - | chr1.1:52030177-52030196 | None:intergenic | 30.0% | |
| AAATAAAACCTATGACGGTT+AGG | - | chr1.1:52029663-52029682 | None:intergenic | 30.0% | |
| AACAAGGTAAAAACAATGGA+TGG | - | chr1.1:52032029-52032048 | None:intergenic | 30.0% | |
| ACTTCATCCAGTATGAAAAA+TGG | - | chr1.1:52032256-52032275 | None:intergenic | 30.0% | |
| AGAGTCAACAAGTAAAATCT+GGG | + | chr1.1:52031617-52031636 | MS.gene49283:intron | 30.0% | |
| AGCTTATCAAAGTCAAAAAC+TGG | - | chr1.1:52028743-52028762 | None:intergenic | 30.0% | |
| ATGGCAATCGTTAAAAAATC+CGG | - | chr1.1:52029442-52029461 | None:intergenic | 30.0% | |
| ATTCGTTCAAAATCTTGTGA+AGG | + | chr1.1:52032322-52032341 | MS.gene49283:CDS | 30.0% | |
| CAAACATCTCACAATAAACA+TGG | + | chr1.1:52031807-52031826 | MS.gene49283:intron | 30.0% | |
| CTTATAAAATTCCAGCCATT+CGG | + | chr1.1:52031038-52031057 | MS.gene49283:intron | 30.0% | |
| GATGAAGAATTGGTTATTAC+AGG | + | chr1.1:52031474-52031493 | MS.gene49283:intron | 30.0% | |
| GATTATGTATTGAATCAACC+TGG | - | chr1.1:52031706-52031725 | None:intergenic | 30.0% | |
| GGTAGACTTTAAGCAAAAAA+TGG | + | chr1.1:52028811-52028830 | MS.gene49283:CDS | 30.0% | |
| TAAGCAAAAAATGGATGCAT+TGG | + | chr1.1:52028820-52028839 | MS.gene49283:CDS | 30.0% | |
| TAATATGGTCCCATTCAAAA+AGG | + | chr1.1:52030883-52030902 | MS.gene49283:intron | 30.0% | |
| TATAGCAGGTACGATATAAT+GGG | - | chr1.1:52030921-52030940 | None:intergenic | 30.0% | |
| TATCTATATTACCAGCGATA+TGG | - | chr1.1:52030554-52030573 | None:intergenic | 30.0% | |
| TCAGTAGAACACTAAAAGAT+AGG | + | chr1.1:52028762-52028781 | MS.gene49283:CDS | 30.0% | |
| TGAAACATGTTGTCACATAT+CGG | + | chr1.1:52029387-52029406 | MS.gene49283:intron | 30.0% | |
| TGAGATGTTTGTTCAAAACA+TGG | - | chr1.1:52031798-52031817 | None:intergenic | 30.0% | |
| TGATAAGGTCAATGAACATA+TGG | + | chr1.1:52029904-52029923 | MS.gene49283:intron | 30.0% | |
| TGTTTGCTTATTGTTTAGTG+AGG | + | chr1.1:52029329-52029348 | MS.gene49283:intron | 30.0% | |
| TTAATGAAGTAAAGCAGAAG+AGG | + | chr1.1:52028975-52028994 | MS.gene49283:CDS | 30.0% | |
| TTGCCTGTCAAAATAATCTA+AGG | + | chr1.1:52029637-52029656 | MS.gene49283:intron | 30.0% | |
| ! | CGTCTTCATTTTCCAAATTT+AGG | - | chr1.1:52030632-52030651 | None:intergenic | 30.0% |
| ! | TCAACATATAAGCTTGTTCA+GGG | - | chr1.1:52029860-52029879 | None:intergenic | 30.0% |
| ! | TTCAACATATAAGCTTGTTC+AGG | - | chr1.1:52029861-52029880 | None:intergenic | 30.0% |
| ! | TTTTGAATGGGACCATATTA+GGG | - | chr1.1:52030883-52030902 | None:intergenic | 30.0% |
| ! | TTTTTGAATGGGACCATATT+AGG | - | chr1.1:52030884-52030903 | None:intergenic | 30.0% |
| ! | TTTTTGTAGTTTTTCCTGCA+AGG | - | chr1.1:52030251-52030270 | None:intergenic | 30.0% |
| !! | ACTTAAAAATAGCTTTGACC+TGG | + | chr1.1:52030058-52030077 | MS.gene49283:intron | 30.0% |
| !! | ATGCAGATATGATTTGTTCA+TGG | + | chr1.1:52030518-52030537 | MS.gene49283:intron | 30.0% |
| !! | TCTTTCTAGTTGAGCATATT+TGG | + | chr1.1:52030809-52030828 | MS.gene49283:intron | 30.0% |
| !!! | ACAATGGATGGTTTTATGAT+TGG | - | chr1.1:52032017-52032036 | None:intergenic | 30.0% |
| !!! | CAATGGATGGTTTTATGATT+GGG | - | chr1.1:52032016-52032035 | None:intergenic | 30.0% |
| !!! | TTAGATTATTTTGACAGGCA+AGG | - | chr1.1:52029638-52029657 | None:intergenic | 30.0% |
| !!! | TTTTTTTTGTGTTAACCCTC+TGG | - | chr1.1:52030374-52030393 | None:intergenic | 30.0% |
| AAAAACCAGTTGGCACATTA+AGG | - | chr1.1:52031945-52031964 | None:intergenic | 35.0% | |
| AAAAGGCAGATGACAAACAA+CGG | - | chr1.1:52030469-52030488 | None:intergenic | 35.0% | |
| AAAATAAGTCTAGCCTGATG+TGG | + | chr1.1:52030090-52030109 | MS.gene49283:intron | 35.0% | |
| AAAGTTCTTATTAGCTGGTG+AGG | - | chr1.1:52031220-52031239 | None:intergenic | 35.0% | |
| AAATAAGTCTAGCCTGATGT+GGG | + | chr1.1:52030091-52030110 | MS.gene49283:intron | 35.0% | |
| AAATGCATTTCAAGCGTAAC+AGG | - | chr1.1:52029998-52030017 | None:intergenic | 35.0% | |
| AAGAACAGCACCAAATTTGA+AGG | + | chr1.1:52028856-52028875 | MS.gene49283:CDS | 35.0% | |
| AATTCTTCTACCTCAACCAA+CGG | + | chr1.1:52031175-52031194 | MS.gene49283:intron | 35.0% | |
| AGTACAAATAACTCTACCTG+TGG | - | chr1.1:52030773-52030792 | None:intergenic | 35.0% | |
| ATAAACATGGTCACTGAGAT+TGG | + | chr1.1:52031820-52031839 | MS.gene49283:intron | 35.0% | |
| ATGGTAGAATTACTAGACGT+TGG | + | chr1.1:52031252-52031271 | MS.gene49283:intron | 35.0% | |
| ATGTTTCCTGATAGCTTAAC+TGG | + | chr1.1:52031514-52031533 | MS.gene49283:intron | 35.0% | |
| CATTTATCAATGCCTTATGG+TGG | - | chr1.1:52029544-52029563 | None:intergenic | 35.0% | |
| CGAAGAAAGTTCTTATTAGC+TGG | - | chr1.1:52031225-52031244 | None:intergenic | 35.0% | |
| CGTCTAGTAATTCTACCATT+CGG | - | chr1.1:52031251-52031270 | None:intergenic | 35.0% | |
| CTATAGCAGGTACGATATAA+TGG | - | chr1.1:52030922-52030941 | None:intergenic | 35.0% | |
| GAAGAATTGGTTATTACAGG+AGG | + | chr1.1:52031477-52031496 | MS.gene49283:intron | 35.0% | |
| GAGAGTCAACAAGTAAAATC+TGG | + | chr1.1:52031616-52031635 | MS.gene49283:intron | 35.0% | |
| GGAAGATGATTTAGAGGAAA+CGG | + | chr1.1:52031312-52031331 | MS.gene49283:intron | 35.0% | |
| TAAACACTGGACTCACAAAA+AGG | - | chr1.1:52030486-52030505 | None:intergenic | 35.0% | |
| TACTTCATGCCATGTAGAAA+TGG | - | chr1.1:52030657-52030676 | None:intergenic | 35.0% | |
| TAGTACATAGCCGATAGTTT+GGG | + | chr1.1:52029050-52029069 | MS.gene49283:intron | 35.0% | |
| TATGTCGCATCACAATTTCA+TGG | - | chr1.1:52029177-52029196 | None:intergenic | 35.0% | |
| TCCAGTATGAAAAATGGTGA+AGG | - | chr1.1:52032250-52032269 | None:intergenic | 35.0% | |
| TGCTTAAAAAGTCTTCTACC+AGG | + | chr1.1:52031685-52031704 | MS.gene49283:intron | 35.0% | |
| TGGAACTGCATACCTAAATT+TGG | + | chr1.1:52030617-52030636 | MS.gene49283:CDS | 35.0% | |
| TGTTTCCTGATAGCTTAACT+GGG | + | chr1.1:52031515-52031534 | MS.gene49283:intron | 35.0% | |
| TTAGTACATAGCCGATAGTT+TGG | + | chr1.1:52029049-52029068 | MS.gene49283:intron | 35.0% | |
| TTTGAATGGGACCATATTAG+GGG | - | chr1.1:52030882-52030901 | None:intergenic | 35.0% | |
| ! | AAACCATGTTAATGGACATG+TGG | - | chr1.1:52032200-52032219 | None:intergenic | 35.0% |
| ! | AATACTCTGAAAACCAGATC+CGG | - | chr1.1:52032374-52032393 | None:intergenic | 35.0% |
| ! | CTCAGTTTGTTCATTCTGAA+CGG | - | chr1.1:52029701-52029720 | None:intergenic | 35.0% |
| ! | TCAGTTTGTTCATTCTGAAC+GGG | - | chr1.1:52029700-52029719 | None:intergenic | 35.0% |
| ! | TCCTATATTTAAAGCCTTGC+AGG | + | chr1.1:52030234-52030253 | MS.gene49283:intron | 35.0% |
| !! | CAGATATGATTTGTTCATGG+AGG | + | chr1.1:52030521-52030540 | MS.gene49283:intron | 35.0% |
| !! | CATCAGGCTAGACTTATTTT+AGG | - | chr1.1:52030090-52030109 | None:intergenic | 35.0% |
| !! | TCCTGCAAGGCTTTAAATAT+AGG | - | chr1.1:52030238-52030257 | None:intergenic | 35.0% |
| !!! | AGGCCTTAGATTATTTTGAC+AGG | - | chr1.1:52029643-52029662 | None:intergenic | 35.0% |
| !!! | GGATTTTTTAACGATTGCCA+TGG | + | chr1.1:52029441-52029460 | MS.gene49283:intron | 35.0% |
| AACTTCACATGCAACACAAC+AGG | - | chr1.1:52031543-52031562 | None:intergenic | 40.0% | |
| AAGATAGGAGACAATCTGAC+AGG | + | chr1.1:52028777-52028796 | MS.gene49283:CDS | 40.0% | |
| AAGTTATAACCGGCTATAGC+AGG | - | chr1.1:52030935-52030954 | None:intergenic | 40.0% | |
| AATATGCACCCGTTAGAGTA+AGG | - | chr1.1:52031986-52032005 | None:intergenic | 40.0% | |
| ACCATACATGCCCAAACTAT+CGG | - | chr1.1:52029063-52029082 | None:intergenic | 40.0% | |
| ACCCATGAACCTTACTCTAA+CGG | + | chr1.1:52031974-52031993 | MS.gene49283:intron | 40.0% | |
| AGATAGGAGACAATCTGACA+GGG | + | chr1.1:52028778-52028797 | MS.gene49283:CDS | 40.0% | |
| ATCTGACAGGGGTAAAATAG+AGG | + | chr1.1:52028790-52028809 | MS.gene49283:CDS | 40.0% | |
| ATGATACCCTAGTTGGCAAT+AGG | - | chr1.1:52029252-52029271 | None:intergenic | 40.0% | |
| ATGTTGTCACATATCGGTCA+TGG | + | chr1.1:52029393-52029412 | MS.gene49283:intron | 40.0% | |
| CAAAATCTTGTGAAGGAGCA+AGG | + | chr1.1:52032329-52032348 | MS.gene49283:CDS | 40.0% | |
| CAAATAACTCTACCTGTGGA+TGG | - | chr1.1:52030769-52030788 | None:intergenic | 40.0% | |
| CGTGTTATGCAAGCTTTCTA+TGG | + | chr1.1:52029493-52029512 | MS.gene49283:intron | 40.0% | |
| CTAGTAATTCTACCATTCGG+TGG | - | chr1.1:52031248-52031267 | None:intergenic | 40.0% | |
| GAAGACGATCCATTTCTACA+TGG | + | chr1.1:52030645-52030664 | MS.gene49283:CDS | 40.0% | |
| GACAACATGTTTCAGAGCTA+GGG | - | chr1.1:52029381-52029400 | None:intergenic | 40.0% | |
| GATACTGATACTTCAACACC+GGG | + | chr1.1:52028716-52028735 | MS.gene49283:CDS | 40.0% | |
| GCAAGTGGAAACCATGTTAA+TGG | - | chr1.1:52032208-52032227 | None:intergenic | 40.0% | |
| GCATCACAATTTCATGGTGT+GGG | - | chr1.1:52029171-52029190 | None:intergenic | 40.0% | |
| GGACAACTTGAATGTTGCAA+AGG | + | chr1.1:52032288-52032307 | MS.gene49283:CDS | 40.0% | |
| GGATACTGATACTTCAACAC+CGG | + | chr1.1:52028715-52028734 | MS.gene49283:CDS | 40.0% | |
| GTCATGAGGTAAGTATAGTC+TGG | - | chr1.1:52030314-52030333 | None:intergenic | 40.0% | |
| GTGGTTTAGGGATGAAGAAT+TGG | + | chr1.1:52031464-52031483 | MS.gene49283:intron | 40.0% | |
| TATATCGTACCTGCTATAGC+CGG | + | chr1.1:52030923-52030942 | MS.gene49283:intron | 40.0% | |
| TCAAAGTCAAAAACTGGACC+CGG | - | chr1.1:52028737-52028756 | None:intergenic | 40.0% | |
| TGACAACATGTTTCAGAGCT+AGG | - | chr1.1:52029382-52029401 | None:intergenic | 40.0% | |
| TGATACCCTAGTTGGCAATA+GGG | - | chr1.1:52029251-52029270 | None:intergenic | 40.0% | |
| TGCCAAGGTAGAGATTATAG+CGG | - | chr1.1:52029146-52029165 | None:intergenic | 40.0% | |
| TGGACCATTGAAAAACCAGT+TGG | - | chr1.1:52031955-52031974 | None:intergenic | 40.0% | |
| TGGAGAGGAAGATGATTTAG+AGG | + | chr1.1:52031306-52031325 | MS.gene49283:intron | 40.0% | |
| TGGTCCAATGCCTTCAAATT+TGG | - | chr1.1:52028869-52028888 | None:intergenic | 40.0% | |
| TTCTGCGTTCATTTCCTCTA+GGG | + | chr1.1:52029571-52029590 | MS.gene49283:intron | 40.0% | |
| TTGAATGTTGCAAAGGTTGC+TGG | + | chr1.1:52032295-52032314 | MS.gene49283:CDS | 40.0% | |
| TTTCTGCGTTCATTTCCTCT+AGG | + | chr1.1:52029570-52029589 | MS.gene49283:intron | 40.0% | |
| ! | ACAAAGCTGAAGCGTTAGTT+GGG | + | chr1.1:52032422-52032441 | MS.gene49283:CDS | 40.0% |
| ! | ACTCTAACGGGTGCATATTA+GGG | + | chr1.1:52031987-52032006 | MS.gene49283:intron | 40.0% |
| ! | AGCACCAAATTTGAAGGCAT+TGG | + | chr1.1:52028862-52028881 | MS.gene49283:CDS | 40.0% |
| ! | AGTTTGGGCATGTATGGTTT+TGG | + | chr1.1:52029065-52029084 | MS.gene49283:intron | 40.0% |
| ! | ATTTTCACCACAATAGCAGC+CGG | - | chr1.1:52029121-52029140 | None:intergenic | 40.0% |
| ! | CTTTTCCTTAATGTGCCAAC+TGG | + | chr1.1:52031937-52031956 | MS.gene49283:intron | 40.0% |
| ! | GTTTGGGCATGTATGGTTTT+GGG | + | chr1.1:52029066-52029085 | MS.gene49283:intron | 40.0% |
| ! | TACTCTAACGGGTGCATATT+AGG | + | chr1.1:52031986-52032005 | MS.gene49283:intron | 40.0% |
| ! | TTCTTTAGAAACTCGTGCAG+AGG | + | chr1.1:52031139-52031158 | MS.gene49283:intron | 40.0% |
| ! | TTTCAAGTAGAGCCTCATAC+TGG | - | chr1.1:52028889-52028908 | None:intergenic | 40.0% |
| !! | AAAATAGCTTTGACCTGGCT+TGG | + | chr1.1:52030063-52030082 | MS.gene49283:intron | 40.0% |
| !! | AAATAGCTTTGACCTGGCTT+GGG | + | chr1.1:52030064-52030083 | MS.gene49283:intron | 40.0% |
| !! | ACATTTGGGTTTGTTGCACA+TGG | - | chr1.1:52031017-52031036 | None:intergenic | 40.0% |
| !! | CATTTGGGTTTGTTGCACAT+GGG | - | chr1.1:52031016-52031035 | None:intergenic | 40.0% |
| !! | GCCTTCACCATTTTTCATAC+TGG | + | chr1.1:52032246-52032265 | MS.gene49283:CDS | 40.0% |
| !! | GTACGATATAATGGGTTCAC+CGG | - | chr1.1:52030913-52030932 | None:intergenic | 40.0% |
| !!! | AGACTTTTAGCTTCCCATCA+TGG | + | chr1.1:52029517-52029536 | MS.gene49283:intron | 40.0% |
| !!! | TGTGCCAACTGGTTTTTCAA+TGG | + | chr1.1:52031948-52031967 | MS.gene49283:intron | 40.0% |
| AAAGAGCAACACACATCCTC+TGG | + | chr1.1:52030593-52030612 | MS.gene49283:CDS | 45.0% | |
| AAAGCTTGCATAACACGCCA+TGG | - | chr1.1:52029490-52029509 | None:intergenic | 45.0% | |
| AACATGGTCACTGAGATTGG+TGG | + | chr1.1:52031823-52031842 | MS.gene49283:intron | 45.0% | |
| AACGATTGCCATGGCCAATT+CGG | + | chr1.1:52029450-52029469 | MS.gene49283:intron | 45.0% | |
| AAGAGCAACACACATCCTCT+GGG | + | chr1.1:52030594-52030613 | MS.gene49283:CDS | 45.0% | |
| AAGCAGATATCGGAGGATTG+TGG | + | chr1.1:52031335-52031354 | MS.gene49283:intron | 45.0% | |
| AAGCGTTAGTTGGGGTTTAC+AGG | + | chr1.1:52032431-52032450 | MS.gene49283:CDS | 45.0% | |
| ACCCGTTAGAGTAAGGTTCA+TGG | - | chr1.1:52031979-52031998 | None:intergenic | 45.0% | |
| ACTAATCAGGATGCTGATGC+CGG | + | chr1.1:52032352-52032371 | MS.gene49283:CDS | 45.0% | |
| AGACTTAGCCGCTAAGTCAT+AGG | + | chr1.1:52030128-52030147 | MS.gene49283:intron | 45.0% | |
| AGCGTTAGTTGGGGTTTACA+GGG | + | chr1.1:52032432-52032451 | MS.gene49283:CDS | 45.0% | |
| AGCTGTCAGGAAAGAAGAGA+AGG | + | chr1.1:52028937-52028956 | MS.gene49283:CDS | 45.0% | |
| AGGTACCCAGTTAAGCTATC+AGG | - | chr1.1:52031523-52031542 | None:intergenic | 45.0% | |
| ATTCCCATAGCAACACCGAA+TGG | - | chr1.1:52031056-52031075 | None:intergenic | 45.0% | |
| CAGATAGTTGTTCCATGTCG+CGG | - | chr1.1:52030707-52030726 | None:intergenic | 45.0% | |
| CATAGCTTCTTTGTGCACTC+CGG | + | chr1.1:52029099-52029118 | MS.gene49283:intron | 45.0% | |
| CCACCTATTAGAACTCTGTC+GGG | - | chr1.1:52031281-52031300 | None:intergenic | 45.0% | |
| CCATGTTTGTGTAACTCGTG+CGG | + | chr1.1:52031093-52031112 | MS.gene49283:intron | 45.0% | |
| CCCATGAACCTTACTCTAAC+GGG | + | chr1.1:52031975-52031994 | MS.gene49283:intron | 45.0% | |
| CCCGTTAGAGTAAGGTTCAT+GGG | - | chr1.1:52031978-52031997 | None:intergenic | 45.0% | |
| CGCATCACAATTTCATGGTG+TGG | - | chr1.1:52029172-52029191 | None:intergenic | 45.0% | |
| CTGGTTCATTCGAAATCGCA+TGG | + | chr1.1:52031660-52031679 | MS.gene49283:intron | 45.0% | |
| GAAAAGGGGACATGGTAATC+CGG | - | chr1.1:52030343-52030362 | None:intergenic | 45.0% | |
| GAATAGAAGGGGAAGAAGAG+GGG | + | chr1.1:52031889-52031908 | MS.gene49283:intron | 45.0% | |
| GACATGGAACAACTATCTGG+CGG | + | chr1.1:52030708-52030727 | MS.gene49283:CDS | 45.0% | |
| GAGGAAACGGAAGCAGATAT+CGG | + | chr1.1:52031325-52031344 | MS.gene49283:intron | 45.0% | |
| GAGGAAGTGAGAACTCTCTA+CGG | + | chr1.1:52031357-52031376 | MS.gene49283:intron | 45.0% | |
| GATAGGAGACAATCTGACAG+GGG | + | chr1.1:52028779-52028798 | MS.gene49283:CDS | 45.0% | |
| GCCACCTATTAGAACTCTGT+CGG | - | chr1.1:52031282-52031301 | None:intergenic | 45.0% | |
| GCTAAGTCTTAGCCTACATC+AGG | - | chr1.1:52030117-52030136 | None:intergenic | 45.0% | |
| GGAATAGAAGGGGAAGAAGA+GGG | + | chr1.1:52031888-52031907 | MS.gene49283:intron | 45.0% | |
| GGCACAATAGTGCGACTATA+GGG | + | chr1.1:52029225-52029244 | MS.gene49283:intron | 45.0% | |
| GGTCCACATGTCCATTAACA+TGG | + | chr1.1:52032194-52032213 | MS.gene49283:intron | 45.0% | |
| GTTAGAGTAAGGTTCATGGG+TGG | - | chr1.1:52031975-52031994 | None:intergenic | 45.0% | |
| TCCCATTCAAAAAGGTCCAC+CGG | + | chr1.1:52030891-52030910 | MS.gene49283:intron | 45.0% | |
| TCTAGGGGTGAGAATTGGTT+GGG | + | chr1.1:52029587-52029606 | MS.gene49283:intron | 45.0% | |
| TCTGCGTTCATTTCCTCTAG+GGG | + | chr1.1:52029572-52029591 | MS.gene49283:intron | 45.0% | |
| TGAAGGAGCAAGGACTAATC+AGG | + | chr1.1:52032339-52032358 | MS.gene49283:CDS | 45.0% | |
| TGCCGCTATAATCTCTACCT+TGG | + | chr1.1:52029141-52029160 | MS.gene49283:intron | 45.0% | |
| TGGCACAATAGTGCGACTAT+AGG | + | chr1.1:52029224-52029243 | MS.gene49283:intron | 45.0% | |
| TGGTTGTGTAATGACGGTGA+CGG | + | chr1.1:52031846-52031865 | MS.gene49283:intron | 45.0% | |
| ! | ACCGGTGGACCTTTTTGAAT+GGG | - | chr1.1:52030895-52030914 | None:intergenic | 45.0% |
| ! | AGTTCTAATAGGTGGCGATG+TGG | + | chr1.1:52031286-52031305 | MS.gene49283:intron | 45.0% |
| ! | ATCTAAGGCCTAACCGTCAT+AGG | + | chr1.1:52029652-52029671 | MS.gene49283:intron | 45.0% |
| ! | CAAAGCTGAAGCGTTAGTTG+GGG | + | chr1.1:52032423-52032442 | MS.gene49283:CDS | 45.0% |
| ! | CTCTAACGGGTGCATATTAG+GGG | + | chr1.1:52031988-52032007 | MS.gene49283:intron | 45.0% |
| ! | CTGAAGAGTTTGAAGCTGTC+AGG | + | chr1.1:52028924-52028943 | MS.gene49283:CDS | 45.0% |
| ! | GACAAAGCTGAAGCGTTAGT+TGG | + | chr1.1:52032421-52032440 | MS.gene49283:CDS | 45.0% |
| ! | GGGGCACCCTTTATGAATAA+AGG | - | chr1.1:52030863-52030882 | None:intergenic | 45.0% |
| ! | GTTTACAGGGACTCTGAAAG+AGG | + | chr1.1:52032445-52032464 | MS.gene49283:CDS | 45.0% |
| ! | TACCATGTCCCCTTTTCCTT+GGG | + | chr1.1:52030346-52030365 | MS.gene49283:intron | 45.0% |
| ! | TTACCATGTCCCCTTTTCCT+TGG | + | chr1.1:52030345-52030364 | MS.gene49283:intron | 45.0% |
| ! | TTTCCTCTAGGGGTGAGAAT+TGG | + | chr1.1:52029582-52029601 | MS.gene49283:intron | 45.0% |
| !! | CATAAAGGGTGCCCCTAATA+TGG | + | chr1.1:52030868-52030887 | MS.gene49283:intron | 45.0% |
| !! | GGATGAAGTTGATGCTGCAT+TGG | + | chr1.1:52032267-52032286 | MS.gene49283:CDS | 45.0% |
| !! | GTGTGGTGATGGGAATAGAA+GGG | + | chr1.1:52031877-52031896 | MS.gene49283:intron | 45.0% |
| !! | TCGGTGTTGCTATGGGAATT+GGG | + | chr1.1:52031057-52031076 | MS.gene49283:intron | 45.0% |
| !! | TGGTGGTGGTTGTGTAATGA+CGG | + | chr1.1:52031840-52031859 | MS.gene49283:intron | 45.0% |
| !! | TGTGGTGATGGGAATAGAAG+GGG | + | chr1.1:52031878-52031897 | MS.gene49283:intron | 45.0% |
| !! | TTCGGTGTTGCTATGGGAAT+TGG | + | chr1.1:52031056-52031075 | MS.gene49283:intron | 45.0% |
| !!! | ACTTATTTTAGGCCCAAGCC+AGG | - | chr1.1:52030079-52030098 | None:intergenic | 45.0% |
| !! | ATAAAAATAAAAAATTAACT+TGG | - | chr1.1:52029733-52029752 | None:intergenic | 5.0% |
| ACGATTGCCATGGCCAATTC+GGG | + | chr1.1:52029451-52029470 | MS.gene49283:intron | 50.0% | |
| AGGAATAGACCAGTCAGCGA+CGG | - | chr1.1:52030157-52030176 | None:intergenic | 50.0% | |
| ATAGGGCCCTATTGCCAACT+AGG | + | chr1.1:52029242-52029261 | MS.gene49283:intron | 50.0% | |
| ATGGTCACTGAGATTGGTGG+TGG | + | chr1.1:52031826-52031845 | MS.gene49283:intron | 50.0% | |
| CAACACCATCCTTCCCGAAT+TGG | - | chr1.1:52029467-52029486 | None:intergenic | 50.0% | |
| CAACCAATTCTCACCCCTAG+AGG | - | chr1.1:52029588-52029607 | None:intergenic | 50.0% | |
| CAGATATCGGAGGATTGTGG+AGG | + | chr1.1:52031338-52031357 | MS.gene49283:intron | 50.0% | |
| CCGCACGAGTTACACAAACA+TGG | - | chr1.1:52031096-52031115 | None:intergenic | 50.0% | |
| CCTATTAGAACTCTGTCGGG+TGG | - | chr1.1:52031278-52031297 | None:intergenic | 50.0% | |
| CGCGACATGGAACAACTATC+TGG | + | chr1.1:52030705-52030724 | MS.gene49283:CDS | 50.0% | |
| CGGAGTGCACAAAGAAGCTA+TGG | - | chr1.1:52029101-52029120 | None:intergenic | 50.0% | |
| CTGCTATGCCACCAACAAAG+CGG | + | chr1.1:52030679-52030698 | MS.gene49283:CDS | 50.0% | |
| CTTACCTCATGACCGAACTC+CGG | + | chr1.1:52030321-52030340 | MS.gene49283:intron | 50.0% | |
| GAAACGGAAGCAGATATCGG+AGG | + | chr1.1:52031328-52031347 | MS.gene49283:intron | 50.0% | |
| GAACTTTCTTCGCCACCGAA+TGG | + | chr1.1:52031233-52031252 | MS.gene49283:intron | 50.0% | |
| GAGGCTTTCAACCATATCGC+TGG | + | chr1.1:52030540-52030559 | MS.gene49283:CDS | 50.0% | |
| GCCGATAGTTTGGGCATGTA+TGG | + | chr1.1:52029059-52029078 | MS.gene49283:intron | 50.0% | |
| GGACATGGTAATCCGGAGTT+CGG | - | chr1.1:52030336-52030355 | None:intergenic | 50.0% | |
| GGGAATAGAAGGGGAAGAAG+AGG | + | chr1.1:52031887-52031906 | MS.gene49283:intron | 50.0% | |
| GGTTGTGTAATGACGGTGAC+GGG | + | chr1.1:52031847-52031866 | MS.gene49283:intron | 50.0% | |
| GTGAGAACTCTCTACGGCTT+CGG | + | chr1.1:52031363-52031382 | MS.gene49283:intron | 50.0% | |
| TAATAGGTGGCGATGTGGAG+AGG | + | chr1.1:52031291-52031310 | MS.gene49283:intron | 50.0% | |
| TAATCCGGAGTTCGGTCATG+AGG | - | chr1.1:52030328-52030347 | None:intergenic | 50.0% | |
| TACAAAGAAGCAGACGCCGT+TGG | - | chr1.1:52031194-52031213 | None:intergenic | 50.0% | |
| TAGGGCCCTATTGCCAACTA+GGG | + | chr1.1:52029243-52029262 | MS.gene49283:intron | 50.0% | |
| TATCGGTCATGGTTGCGTCA+TGG | + | chr1.1:52029404-52029423 | MS.gene49283:intron | 50.0% | |
| TATTGTGCCAGAGCTGTCAC+AGG | - | chr1.1:52029214-52029233 | None:intergenic | 50.0% | |
| TCCCATCATGGTCCACCATA+AGG | + | chr1.1:52029529-52029548 | MS.gene49283:intron | 50.0% | |
| TTCCCAAGGAAAAGGGGACA+TGG | - | chr1.1:52030351-52030370 | None:intergenic | 50.0% | |
| ! | CACCGGTGGACCTTTTTGAA+TGG | - | chr1.1:52030896-52030915 | None:intergenic | 50.0% |
| ! | CCACCCGACAGAGTTCTAAT+AGG | + | chr1.1:52031275-52031294 | MS.gene49283:intron | 50.0% |
| ! | CCCGACAGAGTTCTAATAGG+TGG | + | chr1.1:52031278-52031297 | MS.gene49283:intron | 50.0% |
| ! | CCTCTGGTTCCCAAGGAAAA+GGG | - | chr1.1:52030358-52030377 | None:intergenic | 50.0% |
| ! | CCTTTTCCTTGGGAACCAGA+GGG | + | chr1.1:52030356-52030375 | MS.gene49283:intron | 50.0% |
| ! | CTCTAGGGGTGAGAATTGGT+TGG | + | chr1.1:52029586-52029605 | MS.gene49283:intron | 50.0% |
| ! | CTCTGGTTCCCAAGGAAAAG+GGG | - | chr1.1:52030357-52030376 | None:intergenic | 50.0% |
| ! | TGTTAACCCTCTGGTTCCCA+AGG | - | chr1.1:52030365-52030384 | None:intergenic | 50.0% |
| !! | AATGACGGTGACGGGCAATT+GGG | + | chr1.1:52031855-52031874 | MS.gene49283:intron | 50.0% |
| !! | CAGCCATTCGGTGTTGCTAT+GGG | + | chr1.1:52031050-52031069 | MS.gene49283:intron | 50.0% |
| !! | CGATATAATGGGTTCACCGG+TGG | - | chr1.1:52030910-52030929 | None:intergenic | 50.0% |
| !! | CGGTGTTGCTATGGGAATTG+GGG | + | chr1.1:52031058-52031077 | MS.gene49283:intron | 50.0% |
| !! | GAAGGCATTGGACCAGTATG+AGG | + | chr1.1:52028874-52028893 | MS.gene49283:CDS | 50.0% |
| !! | GCCTTATGGTGGACCATGAT+GGG | - | chr1.1:52029533-52029552 | None:intergenic | 50.0% |
| !! | GGTGTGGTGATGGGAATAGA+AGG | + | chr1.1:52031876-52031895 | MS.gene49283:intron | 50.0% |
| !! | GGTGTTGCTATGGGAATTGG+GGG | + | chr1.1:52031059-52031078 | MS.gene49283:intron | 50.0% |
| !! | TAATGACGGTGACGGGCAAT+TGG | + | chr1.1:52031854-52031873 | MS.gene49283:intron | 50.0% |
| !! | TGCCTTATGGTGGACCATGA+TGG | - | chr1.1:52029534-52029553 | None:intergenic | 50.0% |
| AACAAAGCGGTTCCGCGACA+TGG | + | chr1.1:52030692-52030711 | MS.gene49283:CDS | 55.0% | |
| AATAGACCAGTCAGCGACGG+GGG | - | chr1.1:52030154-52030173 | None:intergenic | 55.0% | |
| AGCAACACACATCCTCTGGG+TGG | + | chr1.1:52030597-52030616 | MS.gene49283:CDS | 55.0% | |
| AGGTATGCAGTTCCACCCAG+AGG | - | chr1.1:52030612-52030631 | None:intergenic | 55.0% | |
| ATGTCGCGGAACCGCTTTGT+TGG | - | chr1.1:52030693-52030712 | None:intergenic | 55.0% | |
| CATCCTTCCCGAATTGGCCA+TGG | - | chr1.1:52029461-52029480 | None:intergenic | 55.0% | |
| CATGGCCAATTCGGGAAGGA+TGG | + | chr1.1:52029459-52029478 | MS.gene49283:intron | 55.0% | |
| CCATAGCAACACCGAATGGC+TGG | - | chr1.1:52031052-52031071 | None:intergenic | 55.0% | |
| GAATAGACCAGTCAGCGACG+GGG | - | chr1.1:52030155-52030174 | None:intergenic | 55.0% | |
| GGAATAGACCAGTCAGCGAC+GGG | - | chr1.1:52030156-52030175 | None:intergenic | 55.0% | |
| GGGCAATTGGGTGTGGTGAT+GGG | + | chr1.1:52031867-52031886 | MS.gene49283:intron | 55.0% | |
| TTCATGGTGTGGGCTTGCCA+AGG | - | chr1.1:52029161-52029180 | None:intergenic | 55.0% | |
| TTGCCATGGCCAATTCGGGA+AGG | + | chr1.1:52029455-52029474 | MS.gene49283:intron | 55.0% | |
| ! | CCCTCTGGTTCCCAAGGAAA+AGG | - | chr1.1:52030359-52030378 | None:intergenic | 55.0% |
| ! | CCCTTTTCCTTGGGAACCAG+AGG | + | chr1.1:52030355-52030374 | MS.gene49283:intron | 55.0% |
| ! | CGTTGCTGTTCTCCATCCAC+AGG | + | chr1.1:52030754-52030773 | MS.gene49283:CDS | 55.0% |
| !! | CCAGCCATTCGGTGTTGCTA+TGG | + | chr1.1:52031049-52031068 | MS.gene49283:intron | 55.0% |
| !! | GGTTGCGTCATGGTGGATTG+CGG | + | chr1.1:52029414-52029433 | MS.gene49283:intron | 55.0% |
| CAGGATGCTGATGCCGGATC+TGG | + | chr1.1:52032358-52032377 | MS.gene49283:CDS | 60.0% | |
| CGGGCAATTGGGTGTGGTGA+TGG | + | chr1.1:52031866-52031885 | MS.gene49283:intron | 60.0% | |
| CGGTCATGGTTGCGTCATGG+TGG | + | chr1.1:52029407-52029426 | MS.gene49283:intron | 60.0% | |
| GACGGGGGCCTATGACTTAG+CGG | - | chr1.1:52030139-52030158 | None:intergenic | 60.0% | |
| GCCTACATCAGGCCCACATC+AGG | - | chr1.1:52030106-52030125 | None:intergenic | 60.0% | |
| GCCTGATGTGGGCCTGATGT+AGG | + | chr1.1:52030102-52030121 | MS.gene49283:intron | 60.0% | |
| GTGCACTCCGGCTGCTATTG+TGG | + | chr1.1:52029111-52029130 | MS.gene49283:intron | 60.0% | |
| TAGCCAGCCTGTGACAGCTC+TGG | + | chr1.1:52029204-52029223 | MS.gene49283:intron | 60.0% | |
| ! | GAAGCAGACGCCGTTGGTTG+AGG | - | chr1.1:52031188-52031207 | None:intergenic | 60.0% |
| ! | TCGCGGAACCGCTTTGTTGG+TGG | - | chr1.1:52030690-52030709 | None:intergenic | 60.0% |
| !! | CGGGAAGGATGGTGTTGCCA+TGG | + | chr1.1:52029470-52029489 | MS.gene49283:intron | 60.0% |
| !! | GTCATGGTGGATTGCGGTGC+CGG | + | chr1.1:52029420-52029439 | MS.gene49283:intron | 60.0% |
| GTGCCAGAGCTGTCACAGGC+TGG | - | chr1.1:52029210-52029229 | None:intergenic | 65.0% | |
| !! | CGGTGACGGGCAATTGGGTG+TGG | + | chr1.1:52031860-52031879 | MS.gene49283:intron | 65.0% |
| CATAGGCCCCCGTCGCTGAC+TGG | + | chr1.1:52030145-52030164 | MS.gene49283:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52028713 | 52032467 | 52028713 | ID=MS.gene49283 |
| chr1.1 | mRNA | 52028713 | 52032467 | 52028713 | ID=MS.gene49283.t1;Parent=MS.gene49283 |
| chr1.1 | exon | 52028713 | 52028996 | 52028713 | ID=MS.gene49283.t1.exon1;Parent=MS.gene49283.t1 |
| chr1.1 | CDS | 52028713 | 52028996 | 52028713 | ID=cds.MS.gene49283.t1;Parent=MS.gene49283.t1 |
| chr1.1 | exon | 52030524 | 52030775 | 52030524 | ID=MS.gene49283.t1.exon2;Parent=MS.gene49283.t1 |
| chr1.1 | CDS | 52030524 | 52030775 | 52030524 | ID=cds.MS.gene49283.t1;Parent=MS.gene49283.t1 |
| chr1.1 | exon | 52032240 | 52032467 | 52032240 | ID=MS.gene49283.t1.exon3;Parent=MS.gene49283.t1 |
| chr1.1 | CDS | 52032240 | 52032467 | 52032240 | ID=cds.MS.gene49283.t1;Parent=MS.gene49283.t1 |
| Gene Sequence |
| Protein sequence |
