Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34145.t1 | XP_003592260.2 | 90.4 | 456 | 44 | 0 | 1 | 456 | 1 | 456 | 4.90E-208 | 733.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34145.t1 | Q5XVA8 | 40.9 | 298 | 154 | 6 | 39 | 333 | 79 | 357 | 3.8e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34145.t1 | G7IES8 | 90.4 | 456 | 44 | 0 | 1 | 456 | 1 | 456 | 3.5e-208 | 733.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene34145 | 0.809725 | 1.64E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene34145 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene34145 | 0.814044 | 1.88E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene34145 | 0.807397 | 5.16E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene34145 | 0.846815 | 1.71E-59 | -1.69E-46 |
| MS.gene050156 | MS.gene34145 | 0.816043 | 6.78E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene34145 | 0.807601 | 4.67E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene34145 | 0.814672 | 1.37E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene34145 | 0.803833 | 2.89E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene34145 | 0.817813 | 2.71E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene34145 | 0.843591 | 1.28E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene34145 | 0.808121 | 3.62E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene34145 | 0.82085 | 5.52E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene34145 | 0.81216 | 4.88E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene34145 | 0.823078 | 1.68E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene34145 | 0.821867 | 3.21E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene34145 | 0.827228 | 1.76E-54 | -1.69E-46 |
| MS.gene053998 | MS.gene34145 | 0.803391 | 3.56E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene34145 | 0.843415 | 1.42E-58 | -1.69E-46 |
| MS.gene055166 | MS.gene34145 | 0.808765 | 2.64E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene34145 | 0.838415 | 2.92E-57 | -1.69E-46 |
| MS.gene056050 | MS.gene34145 | 0.80351 | 3.37E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene34145 | 0.82019 | 7.82E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene34145 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene34145 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene34145 | 0.810392 | 1.18E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene34145 | 0.850902 | 1.26E-60 | -1.69E-46 |
| MS.gene058829 | MS.gene34145 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene34145 | 0.821737 | 3.44E-53 | -1.69E-46 |
| MS.gene061163 | MS.gene34145 | 0.929637 | 5.22E-93 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065578 | MS.gene34145 | PPI |
| MS.gene34145 | MS.gene009450 | PPI |
| MS.gene34145 | MS.gene51623 | PPI |
| MS.gene34145 | MS.gene56252 | PPI |
| MS.gene063424 | MS.gene34145 | PPI |
| MS.gene34145 | MS.gene059441 | PPI |
| MS.gene84379 | MS.gene34145 | PPI |
| MS.gene059442 | MS.gene34145 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34145.t1 | MTR_1g100880 | 94.298 | 456 | 26 | 0 | 1 | 456 | 1 | 456 | 0.0 | 848 |
| MS.gene34145.t1 | MTR_8g089685 | 35.258 | 329 | 196 | 5 | 103 | 426 | 313 | 629 | 5.69e-36 | 140 |
| MS.gene34145.t1 | MTR_8g089685 | 30.043 | 233 | 147 | 4 | 103 | 331 | 313 | 533 | 1.39e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34145.t1 | AT3G49055 | 49.351 | 308 | 145 | 4 | 125 | 431 | 156 | 453 | 2.66e-71 | 233 |
| MS.gene34145.t1 | AT1G24560 | 37.425 | 334 | 191 | 8 | 125 | 452 | 351 | 672 | 1.20e-34 | 137 |
Find 86 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAGGATTGCATTTC+TGG | 0.079330 | 1.2:-75156795 | None:intergenic |
| TCAGAGGTGTAGGGTGAATT+TGG | 0.200366 | 1.2:-75154036 | None:intergenic |
| CATTTCTGGTATCATCCTTT+TGG | 0.244152 | 1.2:-75156781 | None:intergenic |
| CACTCAATTGAGAAGATCTT+TGG | 0.250215 | 1.2:+75155481 | MS.gene34145:CDS |
| TGAATCCTTCATTTCAATAA+AGG | 0.255904 | 1.2:+75154209 | MS.gene34145:CDS |
| TAAAGGGACATGATCATAAA+AGG | 0.299279 | 1.2:+75154532 | MS.gene34145:CDS |
| TTATAAGGAGTTAAGGAAAA+AGG | 0.301417 | 1.2:+75154401 | MS.gene34145:CDS |
| CTTGCTTAGGGTTGCTTTGT+TGG | 0.306411 | 1.2:+75154485 | MS.gene34145:CDS |
| TGAATCGACGGTGTTGTTAT+TGG | 0.323423 | 1.2:+75154323 | MS.gene34145:CDS |
| GGGATATTAATAACTTGCTT+AGG | 0.323686 | 1.2:+75154472 | MS.gene34145:CDS |
| AACAAAGGTGGAAAATTATA+AGG | 0.327278 | 1.2:+75154386 | MS.gene34145:CDS |
| CTCTGATTCCTCTAGTTGTC+TGG | 0.328896 | 1.2:-75156655 | None:intergenic |
| CAAGTTTAACTGAAGAGAAT+AGG | 0.334464 | 1.2:+75154451 | MS.gene34145:CDS |
| GGCATTGGAGAAGAAAATAA+AGG | 0.348101 | 1.2:+75154515 | MS.gene34145:CDS |
| CTCAAAACAGTTTCAGAGTA+AGG | 0.362902 | 1.2:-75154093 | None:intergenic |
| GATTGAAGAGCGTGACAAAA+TGG | 0.368630 | 1.2:+75156135 | MS.gene34145:CDS |
| TTCTCAATTGAGTGATTTCA+AGG | 0.377950 | 1.2:-75155472 | None:intergenic |
| AATATTGCTACCTCTAGAAT+TGG | 0.380419 | 1.2:+75156753 | MS.gene34145:CDS |
| TGAAGTGGAAGTTGTTAGTT+TGG | 0.382314 | 1.2:+75154683 | MS.gene34145:CDS |
| GGAATCCTTTATTGAAATGA+AGG | 0.382840 | 1.2:-75154214 | None:intergenic |
| TGGAAAATTATAAGGAGTTA+AGG | 0.385060 | 1.2:+75154394 | MS.gene34145:CDS |
| GCAGAAAGCAAAGGGTGCTT+TGG | 0.394638 | 1.2:+75156497 | MS.gene34145:CDS |
| AGAGAGTTTAGAGGGAGAAA+AGG | 0.399871 | 1.2:+75154251 | MS.gene34145:CDS |
| GAAGATCTTTGGAAGAATCT+AGG | 0.411043 | 1.2:+75155492 | MS.gene34145:CDS |
| CAGAAGAAGAGGTAGCTAGA+TGG | 0.415692 | 1.2:+75156071 | MS.gene34145:CDS |
| ATGGAAGGAAGCTTGTGAAT+TGG | 0.425674 | 1.2:+75156090 | MS.gene34145:CDS |
| TAGAGTAAAAGAGAGTTTAG+AGG | 0.428291 | 1.2:+75154242 | MS.gene34145:CDS |
| ATTGTTGAGTTTGTACTGAT+TGG | 0.430495 | 1.2:-75154013 | None:intergenic |
| GGTTGCTTTGTTGGAGAAAG+AGG | 0.435951 | 1.2:+75154494 | MS.gene34145:CDS |
| AGCTTGTGAATTGGAAGTTA+AGG | 0.438841 | 1.2:+75156099 | MS.gene34145:CDS |
| AGTTTGGATTGCAGAAAGTT+GGG | 0.445362 | 1.2:+75154577 | MS.gene34145:CDS |
| AGTTTGTACTGATTGGAAGA+TGG | 0.446181 | 1.2:-75154006 | None:intergenic |
| GGATTGCAGAAAGTTGGGTT+TGG | 0.447142 | 1.2:+75154582 | MS.gene34145:CDS |
| AACTCAGCAAACTGCAAAAG+TGG | 0.459010 | 1.2:-75154558 | None:intergenic |
| GGATATTAATAACTTGCTTA+GGG | 0.460080 | 1.2:+75154473 | MS.gene34145:CDS |
| AAGTTTAACTGAAGAGAATA+GGG | 0.463002 | 1.2:+75154452 | MS.gene34145:CDS |
| TTTGTTTCTCTGTGAGACAC+TGG | 0.481946 | 1.2:-75155849 | None:intergenic |
| ATACACATCTCATTGAAGAA+AGG | 0.484459 | 1.2:-75156808 | None:intergenic |
| CTGATTGGAAGATGGGTGAT+AGG | 0.487601 | 1.2:-75153998 | None:intergenic |
| AAGAGGCAAGGTTAATATCA+AGG | 0.488668 | 1.2:+75154346 | MS.gene34145:CDS |
| GAGTTTGGATTGCAGAAAGT+TGG | 0.488938 | 1.2:+75154576 | MS.gene34145:CDS |
| GACGGTGTTGTTATTGGAAG+AGG | 0.492182 | 1.2:+75154329 | MS.gene34145:CDS |
| AGAAGATAGAGAGAGAATCT+TGG | 0.496215 | 1.2:+75155912 | MS.gene34145:CDS |
| TGAACTTCGTCGGCAGATAG+AGG | 0.497803 | 1.2:+75156626 | MS.gene34145:CDS |
| CATTATCCTTTCCACTGTTG+AGG | 0.498340 | 1.2:-75155438 | None:intergenic |
| TTTGGATTCATGATGGGAGG+TGG | 0.499288 | 1.2:+75154600 | MS.gene34145:CDS |
| AGTTGGGTTTGGATTCATGA+TGG | 0.502092 | 1.2:+75154593 | MS.gene34145:CDS |
| GTTTGTACTGATTGGAAGAT+GGG | 0.507092 | 1.2:-75154005 | None:intergenic |
| TGGTAATAATGTGCAATCAA+TGG | 0.508772 | 1.2:+75154620 | MS.gene34145:CDS |
| GCATTGGAGAAGAAAATAAA+GGG | 0.508904 | 1.2:+75154516 | MS.gene34145:CDS |
| AGAGTAAAAGAGAGTTTAGA+GGG | 0.509789 | 1.2:+75154243 | MS.gene34145:CDS |
| AATGGCTGCAATAGCTGCAC+AGG | 0.512276 | 1.2:+75156560 | MS.gene34145:CDS |
| TGTGAATTGGAAGTTAAGGC+TGG | 0.515864 | 1.2:+75156103 | MS.gene34145:CDS |
| AATCAAAGAAACAGAAGAAG+AGG | 0.521307 | 1.2:+75156060 | MS.gene34145:CDS |
| CTAGAATTGGAAATGCCAAA+AGG | 0.523851 | 1.2:+75156766 | MS.gene34145:CDS |
| GGGTTTGGATTCATGATGGG+AGG | 0.525505 | 1.2:+75154597 | MS.gene34145:CDS |
| ATCAGAAACTTCAGAGGTGT+AGG | 0.527876 | 1.2:-75154046 | None:intergenic |
| GTTGGGTTTGGATTCATGAT+GGG | 0.528280 | 1.2:+75154594 | MS.gene34145:CDS |
| TTTGTTGGAGAAAGAGGCAT+TGG | 0.529077 | 1.2:+75154500 | MS.gene34145:CDS |
| CAAGAACTGCAGAAAGCAAA+GGG | 0.543674 | 1.2:+75156489 | MS.gene34145:CDS |
| AGATAGCAGTGAGTGTGAAG+TGG | 0.556533 | 1.2:+75154668 | MS.gene34145:CDS |
| AATATCAAGGCTTGCAACTG+AGG | 0.558159 | 1.2:+75154359 | MS.gene34145:CDS |
| AAGCGAGTCGACGTATATGT+TGG | 0.561860 | 1.2:+75156700 | MS.gene34145:CDS |
| ATCAAGGCTTGCAACTGAGG+TGG | 0.576214 | 1.2:+75154362 | MS.gene34145:CDS |
| AGAAGAGGTAGCTAGATGGA+AGG | 0.576787 | 1.2:+75156075 | MS.gene34145:CDS |
| TGTCAGAGAAATAGTTTGTG+AGG | 0.577043 | 1.2:+75154284 | MS.gene34145:CDS |
| TGTTGTTATTGGAAGAGGCA+AGG | 0.579247 | 1.2:+75154334 | MS.gene34145:CDS |
| AGAAAACAAACTCTACATCA+AGG | 0.582148 | 1.2:+75155885 | MS.gene34145:CDS |
| CCAAGGCCTCAACAGTGGAA+AGG | 0.591423 | 1.2:+75155432 | MS.gene34145:intron |
| GTAGAGGAGTTGAACTTCGT+CGG | 0.592524 | 1.2:+75156616 | MS.gene34145:CDS |
| ACAAGAACTGCAGAAAGCAA+AGG | 0.594020 | 1.2:+75156488 | MS.gene34145:CDS |
| TGCAACTGAGGTGGAAACAA+AGG | 0.599427 | 1.2:+75154371 | MS.gene34145:CDS |
| TTTGGCATTTCCAATTCTAG+AGG | 0.603440 | 1.2:-75156763 | None:intergenic |
| GGAACTAACCAGACAACTAG+AGG | 0.607450 | 1.2:+75156647 | MS.gene34145:CDS |
| GTTTCTCTGTGAGACACTGG+AGG | 0.609222 | 1.2:-75155846 | None:intergenic |
| TCAGAAACTTCAGAGGTGTA+GGG | 0.615156 | 1.2:-75154045 | None:intergenic |
| ATCAATGGATGGTACTTCTG+AGG | 0.620756 | 1.2:+75154635 | MS.gene34145:CDS |
| AGAGTTAAGTGATGAATCGA+CGG | 0.625680 | 1.2:+75154311 | MS.gene34145:CDS |
| AATAATGTGCAATCAATGGA+TGG | 0.631660 | 1.2:+75154624 | MS.gene34145:CDS |
| TTGAAGCTAGCTGATAGTAG+AGG | 0.633294 | 1.2:+75156600 | MS.gene34145:CDS |
| TGTATTGGATGGAAATGAAG+CGG | 0.638676 | 1.2:+75154128 | MS.gene34145:CDS |
| GTCGACGTATATGTTGGCCA+TGG | 0.642616 | 1.2:+75156706 | MS.gene34145:CDS |
| ACTCAAAGAAGAGCTAGCAA+TGG | 0.653656 | 1.2:+75156542 | MS.gene34145:CDS |
| AACTGAGGTGGAAACAAAGG+TGG | 0.664974 | 1.2:+75154374 | MS.gene34145:CDS |
| ACTATGATCAGAAACTTCAG+AGG | 0.696124 | 1.2:-75154052 | None:intergenic |
| CTGCACAGGAAGCAGCAGAG+AGG | 0.705056 | 1.2:+75156574 | MS.gene34145:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAATATATAAACAA+TGG | - | chr1.2:75156243-75156262 | None:intergenic | 10.0% |
| !! | AATATCATAACATTACTTAA+TGG | + | chr1.2:75155141-75155160 | MS.gene34145:intron | 15.0% |
| !! | AGATATAGATTATAGTTTAA+CGG | - | chr1.2:75156426-75156445 | None:intergenic | 15.0% |
| !!! | AAGTATTCTTTTTATTGATA+TGG | - | chr1.2:75156182-75156201 | None:intergenic | 15.0% |
| !!! | ATAATTTGTATATAGAACTA+AGG | - | chr1.2:75154723-75154742 | None:intergenic | 15.0% |
| !!! | TAGTTCTATATACAAATTAT+AGG | + | chr1.2:75154723-75154742 | MS.gene34145:intron | 15.0% |
| !! | AAAATAATATCACTATGTGA+TGG | - | chr1.2:75155557-75155576 | None:intergenic | 20.0% |
| !! | ATGAATATATAAACAATGGA+AGG | - | chr1.2:75156239-75156258 | None:intergenic | 20.0% |
| !! | GTCATATTTATTGATCAAAT+AGG | - | chr1.2:75155953-75155972 | None:intergenic | 20.0% |
| !! | TAACGTAATGAGTAAAAAAA+TGG | + | chr1.2:75154962-75154981 | MS.gene34145:intron | 20.0% |
| !! | TAGTTAGTTAGTTAGTTATT+TGG | + | chr1.2:75155258-75155277 | MS.gene34145:intron | 20.0% |
| !! | TGAATATATAAACAATGGAA+GGG | - | chr1.2:75156238-75156257 | None:intergenic | 20.0% |
| !!! | ATTTTTATAGTTGAGAAAAG+GGG | + | chr1.2:75156257-75156276 | MS.gene34145:intron | 20.0% |
| !!! | CATTTTTATAGTTGAGAAAA+GGG | + | chr1.2:75156256-75156275 | MS.gene34145:intron | 20.0% |
| !!! | TCATTTTTATAGTTGAGAAA+AGG | + | chr1.2:75156255-75156274 | MS.gene34145:intron | 20.0% |
| !!! | TCTTATATATGTTACTTATG+TGG | - | chr1.2:75154926-75154945 | None:intergenic | 20.0% |
| !!! | TGACAGTTATTTTTAAAAAG+CGG | + | chr1.2:75156337-75156356 | MS.gene34145:intron | 20.0% |
| !!! | TTAGTCTATTCTGAAATTTA+TGG | + | chr1.2:75155402-75155421 | MS.gene34145:intron | 20.0% |
| !!! | TTTGAGTCTTAATTTTCTAT+TGG | - | chr1.2:75156529-75156548 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTCTAACTGTTAA+AGG | + | chr1.2:75156018-75156037 | MS.gene34145:intron | 20.0% |
| ! | AAAACCAAACTTAATGAACT+CGG | - | chr1.2:75155780-75155799 | None:intergenic | 25.0% |
| ! | AACAAAGGTGGAAAATTATA+AGG | + | chr1.2:75154386-75154405 | MS.gene34145:CDS | 25.0% |
| ! | AAGATAAAGCTCAAATTCAA+AGG | - | chr1.2:75154789-75154808 | None:intergenic | 25.0% |
| ! | AAGTTTAACTGAAGAGAATA+GGG | + | chr1.2:75154452-75154471 | MS.gene34145:CDS | 25.0% |
| ! | ATAGTATGATATGTTCTTAC+TGG | + | chr1.2:75156380-75156399 | MS.gene34145:intron | 25.0% |
| ! | ATCACGTACATTTAACAAAA+GGG | + | chr1.2:75155093-75155112 | MS.gene34145:intron | 25.0% |
| ! | GAAAAAAGAGAGAAACAAAA+AGG | + | chr1.2:75155118-75155137 | MS.gene34145:intron | 25.0% |
| ! | GTGAATTCAACATAGTTATA+TGG | - | chr1.2:75155526-75155545 | None:intergenic | 25.0% |
| ! | GTTACTTATGTGGTATAAAT+GGG | - | chr1.2:75154916-75154935 | None:intergenic | 25.0% |
| ! | TAATGTTTGAATGTTCCATT+AGG | + | chr1.2:75156452-75156471 | MS.gene34145:intron | 25.0% |
| ! | TATCACGTACATTTAACAAA+AGG | + | chr1.2:75155092-75155111 | MS.gene34145:intron | 25.0% |
| ! | TGAATCCTTCATTTCAATAA+AGG | + | chr1.2:75154209-75154228 | MS.gene34145:CDS | 25.0% |
| ! | TGGAAAATTATAAGGAGTTA+AGG | + | chr1.2:75154394-75154413 | MS.gene34145:CDS | 25.0% |
| ! | TTAAAAAGCGGTGATAATAT+AGG | + | chr1.2:75156349-75156368 | MS.gene34145:intron | 25.0% |
| ! | TTACTTATGTGGTATAAATG+GGG | - | chr1.2:75154915-75154934 | None:intergenic | 25.0% |
| ! | TTATAAGGAGTTAAGGAAAA+AGG | + | chr1.2:75154401-75154420 | MS.gene34145:CDS | 25.0% |
| ! | TTCTATGGAATGTGTTAAAA+GGG | - | chr1.2:75154857-75154876 | None:intergenic | 25.0% |
| ! | TTGAGAAAGAAGAGAAAAAT+GGG | + | chr1.2:75154169-75154188 | MS.gene34145:CDS | 25.0% |
| !! | TGTTACTTATGTGGTATAAA+TGG | - | chr1.2:75154917-75154936 | None:intergenic | 25.0% |
| !! | TTCTTTTTATTGATATGGCA+AGG | - | chr1.2:75156177-75156196 | None:intergenic | 25.0% |
| !!! | AAATTTATGGTCATTTTCCA+AGG | + | chr1.2:75155415-75155434 | MS.gene34145:intron | 25.0% |
| !!! | GGATATTAATAACTTGCTTA+GGG | + | chr1.2:75154473-75154492 | MS.gene34145:CDS | 25.0% |
| AATAATGTGCAATCAATGGA+TGG | + | chr1.2:75154624-75154643 | MS.gene34145:CDS | 30.0% | |
| AATCAAAGAAACAGAAGAAG+AGG | + | chr1.2:75156060-75156079 | MS.gene34145:CDS | 30.0% | |
| AGAAAAATGGGATGATGTTA+AGG | + | chr1.2:75154181-75154200 | MS.gene34145:CDS | 30.0% | |
| AGAAAACAAACTCTACATCA+AGG | + | chr1.2:75155885-75155904 | MS.gene34145:CDS | 30.0% | |
| AGAGTAAAAGAGAGTTTAGA+GGG | + | chr1.2:75154243-75154262 | MS.gene34145:CDS | 30.0% | |
| ATTATTATGAACTTCATGCC+AGG | + | chr1.2:75155809-75155828 | MS.gene34145:intron | 30.0% | |
| CAAGTTTAACTGAAGAGAAT+AGG | + | chr1.2:75154451-75154470 | MS.gene34145:CDS | 30.0% | |
| CTAGAACTCAATCTAAAAAC+TGG | - | chr1.2:75156732-75156751 | None:intergenic | 30.0% | |
| CTTCTATGGAATGTGTTAAA+AGG | - | chr1.2:75154858-75154877 | None:intergenic | 30.0% | |
| CTTTCTTGGAAGAAAAAACT+CGG | - | chr1.2:75155059-75155078 | None:intergenic | 30.0% | |
| GAAAAATGGGATGATGTTAA+GGG | + | chr1.2:75154182-75154201 | MS.gene34145:CDS | 30.0% | |
| GCATAATTCATTCATTTGCA+AGG | + | chr1.2:75155588-75155607 | MS.gene34145:intron | 30.0% | |
| GCATTGGAGAAGAAAATAAA+GGG | + | chr1.2:75154516-75154535 | MS.gene34145:CDS | 30.0% | |
| GGAATCCTTTATTGAAATGA+AGG | - | chr1.2:75154217-75154236 | None:intergenic | 30.0% | |
| GTTGAGAAAGAAGAGAAAAA+TGG | + | chr1.2:75154168-75154187 | MS.gene34145:CDS | 30.0% | |
| TAAAGGGACATGATCATAAA+AGG | + | chr1.2:75154532-75154551 | MS.gene34145:CDS | 30.0% | |
| TAACACATTCCATAGAAGAT+GGG | + | chr1.2:75154860-75154879 | MS.gene34145:intron | 30.0% | |
| TAGAGTAAAAGAGAGTTTAG+AGG | + | chr1.2:75154242-75154261 | MS.gene34145:CDS | 30.0% | |
| TCACGTACATTTAACAAAAG+GGG | + | chr1.2:75155094-75155113 | MS.gene34145:intron | 30.0% | |
| TGGTAATAATGTGCAATCAA+TGG | + | chr1.2:75154620-75154639 | MS.gene34145:CDS | 30.0% | |
| TGTAATCTACTTCTTGCAAA+AGG | + | chr1.2:75155379-75155398 | MS.gene34145:intron | 30.0% | |
| TTAACACATTCCATAGAAGA+TGG | + | chr1.2:75154859-75154878 | MS.gene34145:intron | 30.0% | |
| TTCTCAATTGAGTGATTTCA+AGG | - | chr1.2:75155475-75155494 | None:intergenic | 30.0% | |
| TTTCTTGGAAGAAAAAACTC+GGG | - | chr1.2:75155058-75155077 | None:intergenic | 30.0% | |
| ! | ACTCTCTTTTACTCTAGATA+AGG | - | chr1.2:75154238-75154257 | None:intergenic | 30.0% |
| ! | AGAGAAGCTAGTTTCTTATA+TGG | + | chr1.2:75155297-75155316 | MS.gene34145:intron | 30.0% |
| ! | ATTGTTGAGTTTGTACTGAT+TGG | - | chr1.2:75154016-75154035 | None:intergenic | 30.0% |
| ! | GTACATGTAATGGAACTTAT+AGG | + | chr1.2:75154992-75155011 | MS.gene34145:intron | 30.0% |
| ! | TAGAGAGTATGTGTATACAT+AGG | + | chr1.2:75155325-75155344 | MS.gene34145:intron | 30.0% |
| !! | AATATTGCTACCTCTAGAAT+TGG | + | chr1.2:75156753-75156772 | MS.gene34145:CDS | 30.0% |
| !! | GAGTTCATTAAGTTTGGTTT+TGG | + | chr1.2:75155779-75155798 | MS.gene34145:intron | 30.0% |
| !! | GGGATATTAATAACTTGCTT+AGG | + | chr1.2:75154472-75154491 | MS.gene34145:CDS | 30.0% |
| !!! | AACTGTTTTGAGAGAAAAAC+AGG | + | chr1.2:75154104-75154123 | MS.gene34145:CDS | 30.0% |
| AAAAAGCTAGTGAGAAAGAG+AGG | - | chr1.2:75155996-75156015 | None:intergenic | 35.0% | |
| AAGAGGCAAGGTTAATATCA+AGG | + | chr1.2:75154346-75154365 | MS.gene34145:CDS | 35.0% | |
| ACATCCTAACACAATACTTC+CGG | - | chr1.2:75155197-75155216 | None:intergenic | 35.0% | |
| ACTATGATCAGAAACTTCAG+AGG | - | chr1.2:75154055-75154074 | None:intergenic | 35.0% | |
| ACTGATAGTAGCAGTATTAC+CGG | + | chr1.2:75155175-75155194 | MS.gene34145:intron | 35.0% | |
| AGAAGATAGAGAGAGAATCT+TGG | + | chr1.2:75155912-75155931 | MS.gene34145:CDS | 35.0% | |
| AGAGTTAAGTGATGAATCGA+CGG | + | chr1.2:75154311-75154330 | MS.gene34145:CDS | 35.0% | |
| AGCTTGTGAATTGGAAGTTA+AGG | + | chr1.2:75156099-75156118 | MS.gene34145:CDS | 35.0% | |
| AGTTTGGATTGCAGAAAGTT+GGG | + | chr1.2:75154577-75154596 | MS.gene34145:CDS | 35.0% | |
| ATCACAAGAGAACACTTTCT+TGG | - | chr1.2:75155073-75155092 | None:intergenic | 35.0% | |
| CACTCAATTGAGAAGATCTT+TGG | + | chr1.2:75155481-75155500 | MS.gene34145:CDS | 35.0% | |
| CATACCGAGTTCATTAAGTT+TGG | + | chr1.2:75155773-75155792 | MS.gene34145:intron | 35.0% | |
| CTAGAATTGGAAATGCCAAA+AGG | + | chr1.2:75156766-75156785 | MS.gene34145:CDS | 35.0% | |
| CTCAAAACAGTTTCAGAGTA+AGG | - | chr1.2:75154096-75154115 | None:intergenic | 35.0% | |
| GAAAAACAGGATGTATTGGA+TGG | + | chr1.2:75154117-75154136 | MS.gene34145:CDS | 35.0% | |
| GAGAGAAAAACAGGATGTAT+TGG | + | chr1.2:75154113-75154132 | MS.gene34145:CDS | 35.0% | |
| GTCACATACTCAATTCTTGT+TGG | - | chr1.2:75156321-75156340 | None:intergenic | 35.0% | |
| TGAAGAAAGGATTGCATTTC+TGG | - | chr1.2:75156798-75156817 | None:intergenic | 35.0% | |
| TGAAGTGGAAGTTGTTAGTT+TGG | + | chr1.2:75154683-75154702 | MS.gene34145:CDS | 35.0% | |
| TGCAAGGAAGTGAATGAAAA+AGG | + | chr1.2:75155604-75155623 | MS.gene34145:intron | 35.0% | |
| TGTATTGGATGGAAATGAAG+CGG | + | chr1.2:75154128-75154147 | MS.gene34145:CDS | 35.0% | |
| TGTCTAACTGTTAAAGGTAG+AGG | + | chr1.2:75156024-75156043 | MS.gene34145:intron | 35.0% | |
| TGTTTGAATGTTCCATTAGG+TGG | + | chr1.2:75156455-75156474 | MS.gene34145:intron | 35.0% | |
| TTCCATAGAAGATGGGAAAA+TGG | + | chr1.2:75154867-75154886 | MS.gene34145:intron | 35.0% | |
| TTTATCTTGTGTCTCGCATA+GGG | + | chr1.2:75154801-75154820 | MS.gene34145:intron | 35.0% | |
| TTTGGCATTTCCAATTCTAG+AGG | - | chr1.2:75156766-75156785 | None:intergenic | 35.0% | |
| ! | AAGCATGAAGCATTTGTGAA+AGG | - | chr1.2:75155655-75155674 | None:intergenic | 35.0% |
| ! | AGCATGAAGCATTTGTGAAA+GGG | - | chr1.2:75155654-75155673 | None:intergenic | 35.0% |
| ! | CTCGGTATGATTTTGAACTA+TGG | - | chr1.2:75155762-75155781 | None:intergenic | 35.0% |
| ! | GAAGATCTTTGGAAGAATCT+AGG | + | chr1.2:75155492-75155511 | MS.gene34145:CDS | 35.0% |
| ! | GGCATTGGAGAAGAAAATAA+AGG | + | chr1.2:75154515-75154534 | MS.gene34145:CDS | 35.0% |
| ! | TACCATTTTCCCATCTTCTA+TGG | - | chr1.2:75154872-75154891 | None:intergenic | 35.0% |
| ! | TAGGGCATTTAAGTTCCAAT+AGG | + | chr1.2:75154819-75154838 | MS.gene34145:intron | 35.0% |
| ! | TGTCAGAGAAATAGTTTGTG+AGG | + | chr1.2:75154284-75154303 | MS.gene34145:CDS | 35.0% |
| !! | AGTTTGTACTGATTGGAAGA+TGG | - | chr1.2:75154009-75154028 | None:intergenic | 35.0% |
| !! | ATTACCGGAAGTATTGTGTT+AGG | + | chr1.2:75155190-75155209 | MS.gene34145:intron | 35.0% |
| !! | GTTTGTACTGATTGGAAGAT+GGG | - | chr1.2:75154008-75154027 | None:intergenic | 35.0% |
| !!! | CATTTCTGGTATCATCCTTT+TGG | - | chr1.2:75156784-75156803 | None:intergenic | 35.0% |
| AACTCAGCAAACTGCAAAAG+TGG | - | chr1.2:75154561-75154580 | None:intergenic | 40.0% | |
| AATATCAAGGCTTGCAACTG+AGG | + | chr1.2:75154359-75154378 | MS.gene34145:CDS | 40.0% | |
| ACAAGAACTGCAGAAAGCAA+AGG | + | chr1.2:75156488-75156507 | MS.gene34145:CDS | 40.0% | |
| ACTCAAAGAAGAGCTAGCAA+TGG | + | chr1.2:75156542-75156561 | MS.gene34145:CDS | 40.0% | |
| AGAGAGTTTAGAGGGAGAAA+AGG | + | chr1.2:75154251-75154270 | MS.gene34145:CDS | 40.0% | |
| AGTTGGGTTTGGATTCATGA+TGG | + | chr1.2:75154593-75154612 | MS.gene34145:CDS | 40.0% | |
| ATCAATGGATGGTACTTCTG+AGG | + | chr1.2:75154635-75154654 | MS.gene34145:CDS | 40.0% | |
| ATGGAAGGAAGCTTGTGAAT+TGG | + | chr1.2:75156090-75156109 | MS.gene34145:CDS | 40.0% | |
| CAAGAACTGCAGAAAGCAAA+GGG | + | chr1.2:75156489-75156508 | MS.gene34145:CDS | 40.0% | |
| CATTATCCTTTCCACTGTTG+AGG | - | chr1.2:75155441-75155460 | None:intergenic | 40.0% | |
| CTCAATCTAAAAACTGGCCA+TGG | - | chr1.2:75156726-75156745 | None:intergenic | 40.0% | |
| CTTTATCTTGTGTCTCGCAT+AGG | + | chr1.2:75154800-75154819 | MS.gene34145:intron | 40.0% | |
| GAAAAAGGAGAAGAGAGAGT+TGG | + | chr1.2:75154416-75154435 | MS.gene34145:CDS | 40.0% | |
| GAGTTTGGATTGCAGAAAGT+TGG | + | chr1.2:75154576-75154595 | MS.gene34145:CDS | 40.0% | |
| GATGGGAAAATGGTACATGT+AGG | + | chr1.2:75154877-75154896 | MS.gene34145:intron | 40.0% | |
| GGGTAACAATGTACACCTAT+TGG | - | chr1.2:75154837-75154856 | None:intergenic | 40.0% | |
| GTTGGGTTTGGATTCATGAT+GGG | + | chr1.2:75154594-75154613 | MS.gene34145:CDS | 40.0% | |
| TGTGAATTGGAAGTTAAGGC+TGG | + | chr1.2:75156103-75156122 | MS.gene34145:CDS | 40.0% | |
| TTGAAGCTAGCTGATAGTAG+AGG | + | chr1.2:75156600-75156619 | MS.gene34145:CDS | 40.0% | |
| ! | ATCAGAAACTTCAGAGGTGT+AGG | - | chr1.2:75154049-75154068 | None:intergenic | 40.0% |
| ! | GATTGAAGAGCGTGACAAAA+TGG | + | chr1.2:75156135-75156154 | MS.gene34145:CDS | 40.0% |
| ! | TCAGAAACTTCAGAGGTGTA+GGG | - | chr1.2:75154048-75154067 | None:intergenic | 40.0% |
| ! | TGTTGTTATTGGAAGAGGCA+AGG | + | chr1.2:75154334-75154353 | MS.gene34145:CDS | 40.0% |
| ! | TTTGTTGGAGAAAGAGGCAT+TGG | + | chr1.2:75154500-75154519 | MS.gene34145:CDS | 40.0% |
| ! | TTTGTTTCTCTGTGAGACAC+TGG | - | chr1.2:75155852-75155871 | None:intergenic | 40.0% |
| !! | TGAATCGACGGTGTTGTTAT+TGG | + | chr1.2:75154323-75154342 | MS.gene34145:CDS | 40.0% |
| !!! | CTTTTGCAGTTTGCTGAGTT+TGG | + | chr1.2:75154561-75154580 | MS.gene34145:CDS | 40.0% |
| AACTGAGGTGGAAACAAAGG+TGG | + | chr1.2:75154374-75154393 | MS.gene34145:CDS | 45.0% | |
| AAGCGAGTCGACGTATATGT+TGG | + | chr1.2:75156700-75156719 | MS.gene34145:CDS | 45.0% | |
| AGAAGAGGTAGCTAGATGGA+AGG | + | chr1.2:75156075-75156094 | MS.gene34145:CDS | 45.0% | |
| AGATAGCAGTGAGTGTGAAG+TGG | + | chr1.2:75154668-75154687 | MS.gene34145:CDS | 45.0% | |
| CAGAAGAAGAGGTAGCTAGA+TGG | + | chr1.2:75156071-75156090 | MS.gene34145:CDS | 45.0% | |
| CTCTGATTCCTCTAGTTGTC+TGG | - | chr1.2:75156658-75156677 | None:intergenic | 45.0% | |
| CTGATTGGAAGATGGGTGAT+AGG | - | chr1.2:75154001-75154020 | None:intergenic | 45.0% | |
| GGAACTAACCAGACAACTAG+AGG | + | chr1.2:75156647-75156666 | MS.gene34145:CDS | 45.0% | |
| GGATTGCAGAAAGTTGGGTT+TGG | + | chr1.2:75154582-75154601 | MS.gene34145:CDS | 45.0% | |
| GTAGAGGAGTTGAACTTCGT+CGG | + | chr1.2:75156616-75156635 | MS.gene34145:CDS | 45.0% | |
| TGCAACTGAGGTGGAAACAA+AGG | + | chr1.2:75154371-75154390 | MS.gene34145:CDS | 45.0% | |
| TGGCAGCACTGTACATGTAA+TGG | + | chr1.2:75154982-75155001 | MS.gene34145:intron | 45.0% | |
| ! | ATTTTCCAAGGCCTCAACAG+TGG | + | chr1.2:75155427-75155446 | MS.gene34145:intron | 45.0% |
| ! | CTTGCTTAGGGTTGCTTTGT+TGG | + | chr1.2:75154485-75154504 | MS.gene34145:CDS | 45.0% |
| ! | GGTTGCTTTGTTGGAGAAAG+AGG | + | chr1.2:75154494-75154513 | MS.gene34145:CDS | 45.0% |
| ! | TCAGAGGTGTAGGGTGAATT+TGG | - | chr1.2:75154039-75154058 | None:intergenic | 45.0% |
| ! | TTTGGATTCATGATGGGAGG+TGG | + | chr1.2:75154600-75154619 | MS.gene34145:CDS | 45.0% |
| !! | GACGGTGTTGTTATTGGAAG+AGG | + | chr1.2:75154329-75154348 | MS.gene34145:CDS | 45.0% |
| AATGGCTGCAATAGCTGCAC+AGG | + | chr1.2:75156560-75156579 | MS.gene34145:CDS | 50.0% | |
| ATCAAGGCTTGCAACTGAGG+TGG | + | chr1.2:75154362-75154381 | MS.gene34145:CDS | 50.0% | |
| GTCGACGTATATGTTGGCCA+TGG | + | chr1.2:75156706-75156725 | MS.gene34145:CDS | 50.0% | |
| GTTTCAGTGCAGCCACCTAA+TGG | - | chr1.2:75156470-75156489 | None:intergenic | 50.0% | |
| GTTTCTCTGTGAGACACTGG+AGG | - | chr1.2:75155849-75155868 | None:intergenic | 50.0% | |
| TGAACTTCGTCGGCAGATAG+AGG | + | chr1.2:75156626-75156645 | MS.gene34145:CDS | 50.0% | |
| ! | GGGTTTGGATTCATGATGGG+AGG | + | chr1.2:75154597-75154616 | MS.gene34145:CDS | 50.0% |
| !! | GCAGAAAGCAAAGGGTGCTT+TGG | + | chr1.2:75156497-75156516 | MS.gene34145:CDS | 50.0% |
| CCAAGGCCTCAACAGTGGAA+AGG | + | chr1.2:75155432-75155451 | MS.gene34145:intron | 55.0% | |
| CCTTTCCACTGTTGAGGCCT+TGG | - | chr1.2:75155435-75155454 | None:intergenic | 55.0% | |
| CTGCACAGGAAGCAGCAGAG+AGG | + | chr1.2:75156574-75156593 | MS.gene34145:CDS | 60.0% | |
| ! | GAGGCGCTCTGTGTCTGACC+TGG | - | chr1.2:75155830-75155849 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 75153988 | 75156821 | 75153988 | ID=MS.gene34145 |
| chr1.2 | mRNA | 75153988 | 75156821 | 75153988 | ID=MS.gene34145.t1;Parent=MS.gene34145 |
| chr1.2 | exon | 75153988 | 75154704 | 75153988 | ID=MS.gene34145.t1.exon1;Parent=MS.gene34145.t1 |
| chr1.2 | CDS | 75153988 | 75154704 | 75153988 | ID=cds.MS.gene34145.t1;Parent=MS.gene34145.t1 |
| chr1.2 | exon | 75155437 | 75155513 | 75155437 | ID=MS.gene34145.t1.exon2;Parent=MS.gene34145.t1 |
| chr1.2 | CDS | 75155437 | 75155513 | 75155437 | ID=cds.MS.gene34145.t1;Parent=MS.gene34145.t1 |
| chr1.2 | exon | 75155831 | 75155942 | 75155831 | ID=MS.gene34145.t1.exon3;Parent=MS.gene34145.t1 |
| chr1.2 | CDS | 75155831 | 75155942 | 75155831 | ID=cds.MS.gene34145.t1;Parent=MS.gene34145.t1 |
| chr1.2 | exon | 75156040 | 75156156 | 75156040 | ID=MS.gene34145.t1.exon4;Parent=MS.gene34145.t1 |
| chr1.2 | CDS | 75156040 | 75156156 | 75156040 | ID=cds.MS.gene34145.t1;Parent=MS.gene34145.t1 |
| chr1.2 | exon | 75156474 | 75156821 | 75156474 | ID=MS.gene34145.t1.exon5;Parent=MS.gene34145.t1 |
| chr1.2 | CDS | 75156474 | 75156821 | 75156474 | ID=cds.MS.gene34145.t1;Parent=MS.gene34145.t1 |
| Gene Sequence |
| Protein sequence |
