Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98611.t1 | XP_024636344.1 | 88.2 | 882 | 84 | 4 | 1 | 877 | 1 | 867 | 0.00E+00 | 1567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98611.t1 | Q9FQ03 | 46.1 | 842 | 328 | 16 | 1 | 734 | 1 | 824 | 9.9e-190 | 665.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98611.t1 | G7JH90 | 87.0 | 879 | 79 | 4 | 1 | 877 | 1 | 846 | 0.0e+00 | 1534.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene98611 | 0.861591 | 9.21E-64 | -1.69E-46 |
| MS.gene049159 | MS.gene98611 | 0.81764 | 2.97E-52 | -1.69E-46 |
| MS.gene049190 | MS.gene98611 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene98611 | 0.863892 | 1.80E-64 | -1.69E-46 |
| MS.gene049272 | MS.gene98611 | 0.819708 | 1.01E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene98611 | 0.820137 | 8.04E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene98611 | 0.816653 | 4.95E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene98611 | 0.833725 | 4.52E-56 | -1.69E-46 |
| MS.gene049501 | MS.gene98611 | 0.84574 | 3.36E-59 | -1.69E-46 |
| MS.gene049647 | MS.gene98611 | 0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene98611 | 0.851446 | 8.83E-61 | -1.69E-46 |
| MS.gene049824 | MS.gene98611 | 0.810069 | 1.38E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene98611 | 0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene98611 | 0.833874 | 4.15E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene98611 | 0.811068 | 8.42E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene98611 | 0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene050156 | MS.gene98611 | 0.861146 | 1.26E-63 | -1.69E-46 |
| MS.gene05016 | MS.gene98611 | 0.811382 | 7.20E-51 | -1.69E-46 |
| MS.gene050221 | MS.gene98611 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene050273 | MS.gene98611 | 0.800365 | 1.49E-48 | -1.69E-46 |
| MS.gene050287 | MS.gene98611 | -0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene98611 | 0.800655 | 1.30E-48 | -1.69E-46 |
| MS.gene05045 | MS.gene98611 | 0.809125 | 2.21E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene98611 | 0.845286 | 4.47E-59 | -1.69E-46 |
| MS.gene050561 | MS.gene98611 | 0.847549 | 1.08E-59 | -1.69E-46 |
| MS.gene050562 | MS.gene98611 | 0.836177 | 1.09E-56 | -1.69E-46 |
| MS.gene050657 | MS.gene98611 | 0.806783 | 6.96E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene98611 | 0.800455 | 1.43E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene98611 | 0.850608 | 1.52E-60 | -1.69E-46 |
| MS.gene051181 | MS.gene98611 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene98611 | 0.817206 | 3.72E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene98611 | 0.839559 | 1.47E-57 | -1.69E-46 |
| MS.gene051265 | MS.gene98611 | 0.802575 | 5.26E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene98611 | 0.848872 | 4.65E-60 | -1.69E-46 |
| MS.gene051332 | MS.gene98611 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene98611 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene98611 | 0.830366 | 3.06E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene98611 | 0.822654 | 2.11E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene98611 | 0.881256 | 2.79E-70 | -1.69E-46 |
| MS.gene051800 | MS.gene98611 | 0.811353 | 7.30E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene98611 | 0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene98611 | 0.809796 | 1.59E-50 | -1.69E-46 |
| MS.gene052037 | MS.gene98611 | 0.819801 | 9.59E-53 | -1.69E-46 |
| MS.gene052190 | MS.gene98611 | 0.817554 | 3.11E-52 | -1.69E-46 |
| MS.gene052208 | MS.gene98611 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene98611 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene052488 | MS.gene98611 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene98611 | 0.851713 | 7.42E-61 | -1.69E-46 |
| MS.gene052519 | MS.gene98611 | 0.862146 | 6.23E-64 | -1.69E-46 |
| MS.gene052582 | MS.gene98611 | 0.848903 | 4.56E-60 | -1.69E-46 |
| MS.gene052584 | MS.gene98611 | 0.855026 | 8.31E-62 | -1.69E-46 |
| MS.gene052611 | MS.gene98611 | 0.874015 | 9.39E-68 | -1.69E-46 |
| MS.gene052612 | MS.gene98611 | 0.821847 | 3.25E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene98611 | 0.852769 | 3.71E-61 | -1.69E-46 |
| MS.gene052863 | MS.gene98611 | 0.867155 | 1.69E-65 | -1.69E-46 |
| MS.gene052896 | MS.gene98611 | 0.811217 | 7.82E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene98611 | 0.80662 | 7.53E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene98611 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene98611 | 0.840301 | 9.44E-58 | -1.69E-46 |
| MS.gene053145 | MS.gene98611 | 0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene98611 | 0.819285 | 1.26E-52 | -1.69E-46 |
| MS.gene053201 | MS.gene98611 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene98611 | 0.876148 | 1.76E-68 | -1.69E-46 |
| MS.gene053599 | MS.gene98611 | 0.802159 | 6.40E-49 | -1.69E-46 |
| MS.gene053621 | MS.gene98611 | 0.804619 | 1.98E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene98611 | 0.801057 | 1.08E-48 | -1.69E-46 |
| MS.gene053966 | MS.gene98611 | 0.8114 | 7.13E-51 | -1.69E-46 |
| MS.gene053974 | MS.gene98611 | 0.802646 | 5.08E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene98611 | 0.844568 | 6.98E-59 | -1.69E-46 |
| MS.gene05415 | MS.gene98611 | 0.802694 | 4.97E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene98611 | 0.816214 | 6.21E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene98611 | 0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene98611 | 0.826973 | 2.02E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene98611 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene98611 | 0.809729 | 1.64E-50 | -1.69E-46 |
| MS.gene05447 | MS.gene98611 | 0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene98611 | 0.804634 | 1.97E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene98611 | 0.812405 | 4.31E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene98611 | 0.830019 | 3.72E-55 | -1.69E-46 |
| MS.gene05458 | MS.gene98611 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene98611 | 0.88003 | 7.68E-70 | -1.69E-46 |
| MS.gene054775 | MS.gene98611 | 0.824718 | 6.94E-54 | -1.69E-46 |
| MS.gene054991 | MS.gene98611 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene055080 | MS.gene98611 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene055083 | MS.gene98611 | 0.826953 | 2.04E-54 | -1.69E-46 |
| MS.gene055227 | MS.gene98611 | 0.837648 | 4.59E-57 | -1.69E-46 |
| MS.gene055228 | MS.gene98611 | 0.811641 | 6.32E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene98611 | 0.812573 | 3.96E-51 | -1.69E-46 |
| MS.gene055464 | MS.gene98611 | 0.823963 | 1.04E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene98611 | 0.812183 | 4.82E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene98611 | 0.826895 | 2.11E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene98611 | 0.81458 | 1.43E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene98611 | 0.809627 | 1.72E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene98611 | -0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene98611 | 0.824004 | 1.02E-53 | -1.69E-46 |
| MS.gene055589 | MS.gene98611 | 0.830601 | 2.68E-55 | -1.69E-46 |
| MS.gene055778 | MS.gene98611 | 0.82921 | 5.85E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene98611 | 0.874984 | 4.40E-68 | -1.69E-46 |
| MS.gene055926 | MS.gene98611 | 0.810078 | 1.38E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene98611 | 0.839482 | 1.54E-57 | -1.69E-46 |
| MS.gene056050 | MS.gene98611 | 0.876739 | 1.10E-68 | -1.69E-46 |
| MS.gene056173 | MS.gene98611 | 0.818773 | 1.65E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene98611 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene98611 | 0.815161 | 1.07E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene98611 | 0.801155 | 1.03E-48 | -1.69E-46 |
| MS.gene056366 | MS.gene98611 | 0.867792 | 1.05E-65 | -1.69E-46 |
| MS.gene056498 | MS.gene98611 | 0.804482 | 2.11E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene98611 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene98611 | 0.807876 | 4.08E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene98611 | 0.833751 | 4.46E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene98611 | 0.854283 | 1.36E-61 | -1.69E-46 |
| MS.gene05659 | MS.gene98611 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene98611 | 0.813069 | 3.08E-51 | -1.69E-46 |
| MS.gene056854 | MS.gene98611 | 0.808476 | 3.04E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene98611 | 0.858082 | 1.05E-62 | -1.69E-46 |
| MS.gene05690 | MS.gene98611 | 0.820488 | 6.68E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene98611 | 0.842062 | 3.25E-58 | -1.69E-46 |
| MS.gene057132 | MS.gene98611 | 0.816236 | 6.14E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene98611 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene98611 | 0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene98611 | 0.839962 | 1.16E-57 | -1.69E-46 |
| MS.gene057598 | MS.gene98611 | 0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene98611 | 0.805854 | 1.09E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene98611 | 0.816974 | 4.19E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene98611 | 0.811224 | 7.79E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene98611 | 0.82277 | 1.98E-53 | -1.69E-46 |
| MS.gene057921 | MS.gene98611 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene058009 | MS.gene98611 | 0.831117 | 2.00E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene98611 | 0.859655 | 3.56E-63 | -1.69E-46 |
| MS.gene058037 | MS.gene98611 | 0.842738 | 2.15E-58 | -1.69E-46 |
| MS.gene058339 | MS.gene98611 | 0.807231 | 5.59E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene98611 | 0.883063 | 6.16E-71 | -1.69E-46 |
| MS.gene058783 | MS.gene98611 | 0.811016 | 8.64E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene98611 | 0.852387 | 4.77E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene98611 | 0.858252 | 9.36E-63 | -1.69E-46 |
| MS.gene059015 | MS.gene98611 | 0.853618 | 2.12E-61 | -1.69E-46 |
| MS.gene059272 | MS.gene98611 | 0.853484 | 2.32E-61 | -1.69E-46 |
| MS.gene059439 | MS.gene98611 | 0.815026 | 1.14E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene98611 | 0.841802 | 3.81E-58 | -1.69E-46 |
| MS.gene059584 | MS.gene98611 | 0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene98611 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene98611 | 0.810218 | 1.29E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene98611 | 0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene98611 | 0.833797 | 4.34E-56 | -1.69E-46 |
| MS.gene060310 | MS.gene98611 | 0.800523 | 1.38E-48 | -1.69E-46 |
| MS.gene060312 | MS.gene98611 | 0.833497 | 5.16E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene98611 | 0.838827 | 2.28E-57 | -1.69E-46 |
| MS.gene060521 | MS.gene98611 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene98611 | 0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene98611 | 0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene98611 | 0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene98611 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene98611 | 0.82485 | 6.46E-54 | -1.69E-46 |
| MS.gene061091 | MS.gene98611 | 0.801087 | 1.06E-48 | -1.69E-46 |
| MS.gene061163 | MS.gene98611 | 0.830117 | 3.52E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98611.t1 | MTR_4g051920 | 87.600 | 879 | 74 | 4 | 1 | 877 | 1 | 846 | 0.0 | 1573 |
| MS.gene98611.t1 | MTR_7g114570 | 43.088 | 803 | 301 | 18 | 1 | 732 | 1 | 718 | 0.0 | 582 |
| MS.gene98611.t1 | MTR_7g114570 | 42.928 | 806 | 309 | 19 | 1 | 732 | 1 | 729 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98611.t1 | AT1G75660 | 46.429 | 840 | 324 | 16 | 1 | 732 | 1 | 822 | 0.0 | 660 |
| MS.gene98611.t1 | AT5G42540 | 45.858 | 833 | 333 | 15 | 1 | 732 | 1 | 816 | 0.0 | 650 |
| MS.gene98611.t1 | AT5G42540 | 45.261 | 844 | 333 | 16 | 1 | 732 | 1 | 827 | 0.0 | 641 |
| MS.gene98611.t1 | AT1G54490 | 43.049 | 820 | 313 | 15 | 1 | 746 | 1 | 740 | 0.0 | 614 |
| MS.gene98611.t1 | AT1G54490 | 43.048 | 748 | 293 | 13 | 56 | 746 | 11 | 682 | 0.0 | 558 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACGAATTTCATCGTATT+TGG | 0.150872 | 4.2:+50155512 | None:intergenic |
| TCCATTTGCTTCGGACTTAA+AGG | 0.176185 | 4.2:-50152498 | MS.gene98611:CDS |
| AACACGGTTCACTGTTTATA+TGG | 0.203040 | 4.2:-50154964 | MS.gene98611:CDS |
| AGTCAGCATTATAATCGTTT+TGG | 0.237014 | 4.2:-50151105 | MS.gene98611:CDS |
| GCTCCTTTGTGAATTGATTC+TGG | 0.243447 | 4.2:+50150749 | None:intergenic |
| ATCTTCATTTGTTTCTTTGC+TGG | 0.261003 | 4.2:-50154184 | MS.gene98611:CDS |
| CCACCAACATTGAGCTAAAA+AGG | 0.271417 | 4.2:-50153053 | MS.gene98611:CDS |
| TCTGCCTTACATGCCATCTT+TGG | 0.301645 | 4.2:-50154152 | MS.gene98611:CDS |
| GCCTCGCAAGCTATTGTATA+TGG | 0.302733 | 4.2:-50157717 | MS.gene98611:CDS |
| GCTGGTATTGGATGGGGTTC+AGG | 0.308029 | 4.2:-50150728 | MS.gene98611:CDS |
| CATTGATCGTCTTGTAACTA+TGG | 0.308198 | 4.2:-50157744 | MS.gene98611:CDS |
| CCACCAAAACTAGTTGAGTT+AGG | 0.311068 | 4.2:+50150797 | None:intergenic |
| TTATCTGATGCTAATGTTCC+TGG | 0.318479 | 4.2:-50155051 | MS.gene98611:CDS |
| ATCAATTGTGCATAGGCTTT+AGG | 0.320131 | 4.2:+50152279 | None:intergenic |
| GGATATCCTCTGATCCATTA+TGG | 0.339612 | 4.2:-50155226 | MS.gene98611:CDS |
| TTGTTGTTGCTATCATCATT+AGG | 0.343938 | 4.2:+50157906 | None:intergenic |
| CGAATTCCAACAGCTCATTT+AGG | 0.348865 | 4.2:-50150511 | MS.gene98611:CDS |
| GACACTTCACATTCTTGTTT+AGG | 0.353004 | 4.2:+50155326 | None:intergenic |
| CATTTGAAGTGTTTGTGTTA+AGG | 0.354839 | 4.2:+50157985 | None:intergenic |
| TGTATGCAAACTTCCATATA+TGG | 0.356068 | 4.2:-50151956 | MS.gene98611:CDS |
| CAACGTTCGCATGTGCCTTT+TGG | 0.361980 | 4.2:-50150596 | MS.gene98611:CDS |
| TTGAACCGCATTGGAGCATT+TGG | 0.362324 | 4.2:+50154397 | None:intergenic |
| GAAATTCAGTTGAAGTTGAT+AGG | 0.363011 | 4.2:-50151779 | MS.gene98611:CDS |
| TTAATGTCTTCAAACACCTT+TGG | 0.379530 | 4.2:+50158008 | None:intergenic |
| TTCCATGCATACACATTGTT+CGG | 0.382556 | 4.2:+50150545 | None:intergenic |
| CATGTTCGGCACCTCTTATC+TGG | 0.384581 | 4.2:-50151355 | MS.gene98611:CDS |
| ACCATAACACCCTTCCATAA+TGG | 0.385087 | 4.2:+50155212 | None:intergenic |
| CCATTTGCTTCGGACTTAAA+GGG | 0.386749 | 4.2:-50152497 | MS.gene98611:CDS |
| TAAGATCCTCCATGATCATT+AGG | 0.398845 | 4.2:+50150629 | None:intergenic |
| TTAAGAGTTATATTTCTTCA+AGG | 0.402191 | 4.2:-50155247 | MS.gene98611:CDS |
| AAGCTATTGTATATGGCTAT+TGG | 0.413300 | 4.2:-50157710 | MS.gene98611:intron |
| TGAGATAGAAATGAAGATAC+AGG | 0.417312 | 4.2:-50154257 | MS.gene98611:CDS |
| CACCAAAACTAGTTGAGTTA+GGG | 0.419048 | 4.2:+50150798 | None:intergenic |
| TAAACCGTCTAGTCCTTTGC+TGG | 0.424583 | 4.2:+50155541 | None:intergenic |
| CTTCCTCAGTCTCTCTTCCT+CGG | 0.425369 | 4.2:+50155379 | None:intergenic |
| TAGATAAAATTAGGAACTGT+TGG | 0.427627 | 4.2:-50153120 | MS.gene98611:CDS |
| ACTGAGGAAGGAATTTGAAA+TGG | 0.428253 | 4.2:-50155366 | MS.gene98611:CDS |
| TCCATTATGGAAGGGTGTTA+TGG | 0.432134 | 4.2:-50155213 | MS.gene98611:intron |
| TGCTCCTTCAACAACATTTG+TGG | 0.434639 | 4.2:-50157792 | MS.gene98611:CDS |
| GGTTCACTGTTTATATGGAT+TGG | 0.435103 | 4.2:-50154959 | MS.gene98611:intron |
| CATAAACAACCTAATGATCA+TGG | 0.436115 | 4.2:-50150638 | MS.gene98611:CDS |
| ATTCACAAAGGAGCTGGTAT+TGG | 0.439239 | 4.2:-50150740 | MS.gene98611:CDS |
| ATTGGATGGGGTTCAGGTAG+AGG | 0.441242 | 4.2:-50150722 | MS.gene98611:CDS |
| AAATGCTCCAATGCGGTTCA+AGG | 0.446020 | 4.2:-50154395 | MS.gene98611:intron |
| CCCTTTAAGTCCGAAGCAAA+TGG | 0.454665 | 4.2:+50152497 | None:intergenic |
| AGTTGAAGTTGATAGGTTGT+TGG | 0.457586 | 4.2:-50151772 | MS.gene98611:CDS |
| CCACTATGGTCCATTTGCTT+CGG | 0.459238 | 4.2:-50152507 | MS.gene98611:CDS |
| TGGTGTAAACCTTCCAGAAA+AGG | 0.459319 | 4.2:-50151335 | MS.gene98611:intron |
| TCATTAGGTTGTTTATGAAA+AGG | 0.459890 | 4.2:+50150644 | None:intergenic |
| TTTGCATATTTGGTTGTTGA+GGG | 0.461938 | 4.2:-50154287 | MS.gene98611:CDS |
| TATAAACAGTGAACCGTGTT+CGG | 0.463074 | 4.2:+50154967 | None:intergenic |
| AGTTGATCAAAAGGTAAGAA+TGG | 0.463553 | 4.2:+50152437 | None:intergenic |
| ACCGTGTTCGGATCATAATC+AGG | 0.465301 | 4.2:+50154979 | None:intergenic |
| ACACTTAAAAGTTGATCAAA+AGG | 0.465449 | 4.2:+50152428 | None:intergenic |
| TGCAGCTTCTCATTATAGTC+AGG | 0.471855 | 4.2:+50154421 | None:intergenic |
| ACTTCCACAAATGTTGTTGA+AGG | 0.478416 | 4.2:+50157788 | None:intergenic |
| TAAGTGTTCTCCCTCAAAAG+AGG | 0.480997 | 4.2:-50152412 | MS.gene98611:intron |
| ATAAAATTATGTCATTCATA+AGG | 0.481208 | 4.2:-50155017 | MS.gene98611:CDS |
| TAATCCATTCTTGAGTTCGC+TGG | 0.481878 | 4.2:+50151909 | None:intergenic |
| AATTAAACCTTGAACCGCAT+TGG | 0.483273 | 4.2:+50154388 | None:intergenic |
| ATATCCAAAGATGGCATGTA+AGG | 0.484608 | 4.2:+50154148 | None:intergenic |
| CAGGAGTTGCTTCATGGACA+TGG | 0.488947 | 4.2:-50152783 | MS.gene98611:intron |
| ACAGCTCATTTAGGCCTCAA+TGG | 0.490917 | 4.2:-50150502 | MS.gene98611:CDS |
| TGCTTCGGACTTAAAGGGCA+TGG | 0.502737 | 4.2:-50152492 | MS.gene98611:CDS |
| CAAAGGAGCTGGTATTGGAT+GGG | 0.513467 | 4.2:-50150735 | MS.gene98611:CDS |
| AGGAAAGCGCTTCATGTGGC+AGG | 0.513892 | 4.2:-50152116 | MS.gene98611:intron |
| GATGCTGATCTTATAATGCT+TGG | 0.516302 | 4.2:-50154849 | MS.gene98611:CDS |
| TGTTGCTATCATCATTAGGA+TGG | 0.516700 | 4.2:+50157910 | None:intergenic |
| TTTAGCAGCGACGGCATTGG+AGG | 0.516743 | 4.2:-50151556 | MS.gene98611:intron |
| AGCAAATGCATAAAAGAGAA+AGG | 0.519730 | 4.2:-50153342 | MS.gene98611:CDS |
| ATGCTAATGTTCCTGGAGAA+GGG | 0.520161 | 4.2:-50155044 | MS.gene98611:CDS |
| TTGAGGCCTAAATGAGCTGT+TGG | 0.520881 | 4.2:+50150505 | None:intergenic |
| TGCTGCATGAATTCTGTCCC+TGG | 0.521072 | 4.2:+50155284 | None:intergenic |
| GAAACCAGCGAACTCAAGAA+TGG | 0.521588 | 4.2:-50151913 | MS.gene98611:CDS |
| GATGCTAATGTTCCTGGAGA+AGG | 0.521838 | 4.2:-50155045 | MS.gene98611:CDS |
| ACCTCGTGAATATCCAAAGA+TGG | 0.523973 | 4.2:+50154139 | None:intergenic |
| GTCAAATACGAGCATCCTGC+TGG | 0.524098 | 4.2:-50151388 | MS.gene98611:CDS |
| AGCCTATGCACAATTGATGT+TGG | 0.525564 | 4.2:-50152274 | MS.gene98611:CDS |
| TCCTTTGAATCACTCCATTG+AGG | 0.527231 | 4.2:+50150488 | None:intergenic |
| TTGGATGGGGTTCAGGTAGA+GGG | 0.528433 | 4.2:-50150721 | MS.gene98611:CDS |
| ACAAAGGAGCTGGTATTGGA+TGG | 0.528593 | 4.2:-50150736 | MS.gene98611:CDS |
| ACAAGGTGGACACAAGCATA+AGG | 0.533115 | 4.2:-50151701 | MS.gene98611:intron |
| AAAGGCGACTTGTTTAAAAG+TGG | 0.535755 | 4.2:-50153324 | MS.gene98611:CDS |
| CTACCTCGTCCTCTACCAAA+AGG | 0.537396 | 4.2:+50150581 | None:intergenic |
| GAAGGTTTACACCAGATAAG+AGG | 0.537906 | 4.2:+50151344 | None:intergenic |
| GTACACTGAAGGATTGTTGT+GGG | 0.539897 | 4.2:-50152824 | MS.gene98611:CDS |
| GAATCAATTCACAAAGGAGC+TGG | 0.539955 | 4.2:-50150746 | MS.gene98611:CDS |
| ACAGAATGCATGTGATTACA+TGG | 0.542418 | 4.2:-50153587 | MS.gene98611:CDS |
| CTGGTGGTACAAGTCATGTT+CGG | 0.544677 | 4.2:-50151369 | MS.gene98611:CDS |
| AGGAAGGAATTTGAAATGGA+AGG | 0.549315 | 4.2:-50155362 | MS.gene98611:CDS |
| ACCAAAACTAGTTGAGTTAG+GGG | 0.549416 | 4.2:+50150799 | None:intergenic |
| ATCCTCTGATCCATTATGGA+AGG | 0.552359 | 4.2:-50155222 | MS.gene98611:CDS |
| ACTTCGTCTTTGATCTTGAG+CGG | 0.552614 | 4.2:-50154222 | MS.gene98611:CDS |
| GCCTCAATGGAGTGATTCAA+AGG | 0.557141 | 4.2:-50150489 | MS.gene98611:CDS |
| TAACACAAACACTTCAAATG+TGG | 0.557233 | 4.2:-50157982 | MS.gene98611:CDS |
| ATCCGAACAATGTGTATGCA+TGG | 0.558248 | 4.2:-50150547 | MS.gene98611:CDS |
| ACATGACTTGTACCACCAGC+AGG | 0.569156 | 4.2:+50151373 | None:intergenic |
| CTCACTTAAATTAAACAAGG+TGG | 0.569573 | 4.2:-50151715 | MS.gene98611:CDS |
| CAGGTAGAGGGAAATCAGAA+AGG | 0.576545 | 4.2:-50150709 | MS.gene98611:CDS |
| AAAGGAGCTGGTATTGGATG+GGG | 0.579160 | 4.2:-50150734 | MS.gene98611:CDS |
| CCTTTGTGAATTGATTCTGG+AGG | 0.581542 | 4.2:+50150752 | None:intergenic |
| TGCTAATGTTCCTGGAGAAG+GGG | 0.588627 | 4.2:-50155043 | MS.gene98611:CDS |
| GCCATATACAATAGCTTGCG+AGG | 0.591780 | 4.2:+50157716 | None:intergenic |
| ATTCAAAGGATAAAAGTCGT+TGG | 0.593054 | 4.2:-50150475 | MS.gene98611:CDS |
| AGACTGAGGACAAACATTGT+CGG | 0.594878 | 4.2:+50153507 | None:intergenic |
| GGTCAAATAATCAAGACACT+TGG | 0.597825 | 4.2:-50150859 | MS.gene98611:CDS |
| GTTGATAGGTTGTTGGTCAG+CGG | 0.602504 | 4.2:-50151765 | MS.gene98611:CDS |
| GATTCAAATATTATAACACC+AGG | 0.602504 | 4.2:-50155302 | MS.gene98611:CDS |
| AGTACACTGAAGGATTGTTG+TGG | 0.604142 | 4.2:-50152825 | MS.gene98611:CDS |
| TTAGCAGCGACGGCATTGGA+GGG | 0.605881 | 4.2:-50151555 | MS.gene98611:intron |
| GCAAATGGACCATAGTGGTA+GGG | 0.606211 | 4.2:+50152512 | None:intergenic |
| TGTTGTTCTCAACACACTCG+TGG | 0.606281 | 4.2:+50151518 | None:intergenic |
| TCCTCTGATCCATTATGGAA+GGG | 0.606739 | 4.2:-50155221 | MS.gene98611:CDS |
| TAAACTTGGAGAATATCTTG+TGG | 0.609289 | 4.2:-50153985 | MS.gene98611:CDS |
| ATTCATGCAGCAACTTTCGA+AGG | 0.609533 | 4.2:-50155273 | MS.gene98611:CDS |
| CGAGGAAGAGAGACTGAGGA+AGG | 0.609831 | 4.2:-50155378 | MS.gene98611:CDS |
| ATCCAACATCAATTGTGCAT+AGG | 0.611572 | 4.2:+50152272 | None:intergenic |
| GAGCGAAAATGAACCAGCAA+AGG | 0.612334 | 4.2:-50155554 | MS.gene98611:CDS |
| ACATAAATGAGACGATATTG+TGG | 0.612573 | 4.2:-50151137 | MS.gene98611:CDS |
| ACCCTTCCATAATGGATCAG+AGG | 0.615223 | 4.2:+50155220 | None:intergenic |
| TGGATGAATTCAAACAGAGA+AGG | 0.615569 | 4.2:-50150839 | MS.gene98611:CDS |
| TTGCTCACTTAAATTAAACA+AGG | 0.615653 | 4.2:-50151718 | MS.gene98611:CDS |
| AGCAAATGGACCATAGTGGT+AGG | 0.618914 | 4.2:+50152511 | None:intergenic |
| CCGAAGCAAATGGACCATAG+TGG | 0.629001 | 4.2:+50152507 | None:intergenic |
| TCCTGATTATGATCCGAACA+CGG | 0.629375 | 4.2:-50154980 | MS.gene98611:CDS |
| GTTACTCAACAAATATCCAA+AGG | 0.635055 | 4.2:-50158024 | MS.gene98611:CDS |
| TGAACCAGCAAAGGACTAGA+CGG | 0.636674 | 4.2:-50155545 | MS.gene98611:CDS |
| TGGAGATTTCTTGACTGACA+AGG | 0.644849 | 4.2:-50153304 | MS.gene98611:intron |
| TAGGTTCAGAAGTACACTGA+AGG | 0.653526 | 4.2:-50152835 | MS.gene98611:CDS |
| TCATCATTAGGATGGAAACA+AGG | 0.654793 | 4.2:+50157918 | None:intergenic |
| AGTAACCATCTATAAAACGA+TGG | 0.659634 | 4.2:+50158041 | None:intergenic |
| TTTGTATTTATAGGAAGCCG+AGG | 0.659675 | 4.2:-50155396 | MS.gene98611:intron |
| ATATCTTGTGGACATAAACA+AGG | 0.669996 | 4.2:-50153973 | MS.gene98611:intron |
| TAGAAGGAAAGCGCTTCATG+TGG | 0.670368 | 4.2:-50152120 | MS.gene98611:CDS |
| AAATACGAGCATCCTGCTGG+TGG | 0.671206 | 4.2:-50151385 | MS.gene98611:CDS |
| AAGCCGAGGAAGAGAGACTG+AGG | 0.671391 | 4.2:-50155382 | MS.gene98611:CDS |
| CTTACTTCTTCATCAGACTG+AGG | 0.677507 | 4.2:+50153493 | None:intergenic |
| GCCATCTTTGGATATTCACG+AGG | 0.678827 | 4.2:-50154140 | MS.gene98611:intron |
| AAACAGTTAGGGGAGAAACA+TGG | 0.682040 | 4.2:-50153835 | MS.gene98611:intron |
| CCAAAACTAGTTGAGTTAGG+GGG | 0.684296 | 4.2:+50150800 | None:intergenic |
| CAAAAGGCACATGCGAACGT+TGG | 0.684654 | 4.2:+50150597 | None:intergenic |
| CCTCCAGAATCAATTCACAA+AGG | 0.701480 | 4.2:-50150752 | MS.gene98611:CDS |
| TGCAACCAAATGCTCCAATG+CGG | 0.710410 | 4.2:-50154402 | MS.gene98611:CDS |
| ATTCAAATATTATAACACCA+GGG | 0.720952 | 4.2:-50155301 | MS.gene98611:CDS |
| AAACAACCTAATGATCATGG+AGG | 0.725320 | 4.2:-50150635 | MS.gene98611:CDS |
| TCATTCATAAGGAAACAGCG+TGG | 0.793260 | 4.2:-50155006 | MS.gene98611:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 50150472 | 50158072 | 50150472 | ID=MS.gene98611 |
| chr4.2 | mRNA | 50150472 | 50158072 | 50150472 | ID=MS.gene98611.t1;Parent=MS.gene98611 |
| chr4.2 | exon | 50157905 | 50158072 | 50157905 | ID=MS.gene98611.t1.exon1;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50157905 | 50158072 | 50157905 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50157711 | 50157816 | 50157711 | ID=MS.gene98611.t1.exon2;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50157711 | 50157816 | 50157711 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50155515 | 50155591 | 50155515 | ID=MS.gene98611.t1.exon3;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50155515 | 50155591 | 50155515 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50155214 | 50155405 | 50155214 | ID=MS.gene98611.t1.exon4;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50155214 | 50155405 | 50155214 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50154960 | 50155079 | 50154960 | ID=MS.gene98611.t1.exon5;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50154960 | 50155079 | 50154960 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50154809 | 50154871 | 50154809 | ID=MS.gene98611.t1.exon6;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50154809 | 50154871 | 50154809 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50154396 | 50154449 | 50154396 | ID=MS.gene98611.t1.exon7;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50154396 | 50154449 | 50154396 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50154141 | 50154311 | 50154141 | ID=MS.gene98611.t1.exon8;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50154141 | 50154311 | 50154141 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50153974 | 50154051 | 50153974 | ID=MS.gene98611.t1.exon9;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50153974 | 50154051 | 50153974 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50153702 | 50153851 | 50153702 | ID=MS.gene98611.t1.exon10;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50153702 | 50153851 | 50153702 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50153498 | 50153617 | 50153498 | ID=MS.gene98611.t1.exon11;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50153498 | 50153617 | 50153498 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50153305 | 50153400 | 50153305 | ID=MS.gene98611.t1.exon12;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50153305 | 50153400 | 50153305 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50153044 | 50153139 | 50153044 | ID=MS.gene98611.t1.exon13;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50153044 | 50153139 | 50153044 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50152784 | 50152854 | 50152784 | ID=MS.gene98611.t1.exon14;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50152784 | 50152854 | 50152784 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50152413 | 50152541 | 50152413 | ID=MS.gene98611.t1.exon15;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50152413 | 50152541 | 50152413 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50152238 | 50152314 | 50152238 | ID=MS.gene98611.t1.exon16;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50152238 | 50152314 | 50152238 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50152117 | 50152157 | 50152117 | ID=MS.gene98611.t1.exon17;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50152117 | 50152157 | 50152117 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50151906 | 50151980 | 50151906 | ID=MS.gene98611.t1.exon18;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50151906 | 50151980 | 50151906 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50151702 | 50151817 | 50151702 | ID=MS.gene98611.t1.exon19;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50151702 | 50151817 | 50151702 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50151499 | 50151570 | 50151499 | ID=MS.gene98611.t1.exon20;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50151499 | 50151570 | 50151499 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50151336 | 50151414 | 50151336 | ID=MS.gene98611.t1.exon21;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50151336 | 50151414 | 50151336 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50151102 | 50151175 | 50151102 | ID=MS.gene98611.t1.exon22;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50151102 | 50151175 | 50151102 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| chr4.2 | exon | 50150472 | 50150880 | 50150472 | ID=MS.gene98611.t1.exon23;Parent=MS.gene98611.t1 |
| chr4.2 | CDS | 50150472 | 50150880 | 50150472 | ID=cds.MS.gene98611.t1;Parent=MS.gene98611.t1 |
| Gene Sequence |
| Protein sequence |
