AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061468

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061468.t1 MTR_6g088320 96.525 259 9 0 1 259 30 288 0.0 533
MS.gene061468.t1 MTR_8g102910 77.992 259 57 0 1 259 26 284 5.13e-161 448
MS.gene061468.t1 MTR_4g128410 56.693 254 104 2 3 254 31 280 3.01e-102 299
MS.gene061468.t1 MTR_7g093530 56.693 254 104 2 3 254 30 279 2.76e-100 294
MS.gene061468.t1 MTR_2g038860 54.054 259 116 2 3 258 32 290 6.03e-100 293
MS.gene061468.t1 MTR_2g038705 54.054 259 116 2 3 258 32 290 6.03e-100 293
MS.gene061468.t1 MTR_4g128400 57.087 254 103 2 3 254 34 283 2.21e-99 292
MS.gene061468.t1 MTR_4g126920 54.331 254 111 2 3 254 31 281 3.68e-99 291
MS.gene061468.t1 MTR_4g128570 56.299 254 91 3 3 254 37 272 1.60e-97 286
MS.gene061468.t1 MTR_4g128580 57.198 257 102 4 3 254 32 285 5.58e-97 286
MS.gene061468.t1 MTR_3g084630 53.282 259 109 3 3 259 34 282 1.26e-93 277
MS.gene061468.t1 MTR_3g084620 53.282 259 109 3 3 259 34 282 1.68e-93 277
MS.gene061468.t1 MTR_7g084760 50.579 259 122 4 2 258 37 291 3.44e-93 276
MS.gene061468.t1 MTR_7g084770 50.980 255 119 4 2 254 37 287 4.10e-93 276
MS.gene061468.t1 MTR_7g084750 50.593 253 119 4 4 254 39 287 4.32e-92 273
MS.gene061468.t1 MTR_4g128590 53.488 258 95 4 3 254 37 275 4.77e-91 270
MS.gene061468.t1 MTR_8g081040 52.756 254 109 3 3 254 37 281 1.43e-90 269
MS.gene061468.t1 MTR_2g089140 48.638 257 126 2 5 256 33 288 3.17e-90 269
MS.gene061468.t1 MTR_6g033085 50.988 253 118 4 4 254 39 287 1.36e-88 265
MS.gene061468.t1 MTR_6g033055 50.198 253 120 4 4 254 39 287 1.91e-88 264
MS.gene061468.t1 MTR_4g045853 48.438 256 126 2 4 254 34 288 2.17e-87 261
MS.gene061468.t1 MTR_4g097640 48.462 260 126 5 1 257 36 290 1.61e-86 259
MS.gene061468.t1 MTR_4g097670 48.462 260 126 5 1 257 36 290 1.61e-86 259
MS.gene061468.t1 MTR_4g097700 49.027 257 123 5 2 255 74 325 1.62e-86 261
MS.gene061468.t1 MTR_1g105900 46.094 256 134 2 1 254 38 291 2.71e-84 254
MS.gene061468.t1 MTR_2g089140 50.442 226 106 2 36 256 1 225 2.22e-82 246
MS.gene061468.t1 MTR_8g102220 48.062 258 110 4 3 258 35 270 5.49e-82 247
MS.gene061468.t1 MTR_3g089540 50.000 244 115 1 13 256 48 284 5.59e-82 248
MS.gene061468.t1 MTR_8g013055 48.438 256 123 6 3 255 37 286 1.12e-78 239
MS.gene061468.t1 MTR_5g091730 47.303 241 118 2 14 254 47 278 3.65e-77 235
MS.gene061468.t1 MTR_1g105495 45.136 257 133 4 3 254 41 294 2.02e-76 234
MS.gene061468.t1 MTR_7g056090 40.392 255 138 7 3 254 38 281 6.29e-62 196
MS.gene061468.t1 MTR_4g057450 39.147 258 138 6 5 254 58 304 2.12e-59 191
MS.gene061468.t1 MTR_1g063020 39.922 258 136 6 5 254 48 294 7.02e-59 189
MS.gene061468.t1 MTR_7g102260 39.922 258 136 7 5 254 45 291 4.27e-58 187
MS.gene061468.t1 MTR_2g095800 39.382 259 137 7 5 254 62 309 5.93e-58 187
MS.gene061468.t1 MTR_2g049130 42.678 239 127 7 5 240 37 268 9.25e-58 186
MS.gene061468.t1 MTR_2g049030 39.526 253 136 8 5 254 38 276 2.14e-55 179
MS.gene061468.t1 MTR_8g064180 35.458 251 153 5 11 254 62 310 3.12e-49 164
MS.gene061468.t1 MTR_1g033420 36.122 263 150 8 2 254 37 291 6.40e-49 164
MS.gene061468.t1 MTR_5g029100 37.450 251 143 8 13 254 60 305 3.55e-45 155
MS.gene061468.t1 MTR_8g090100 32.453 265 152 10 5 254 29 281 5.97e-42 146
MS.gene061468.t1 MTR_5g029100 38.496 226 125 8 38 254 54 274 7.64e-42 145
MS.gene061468.t1 MTR_8g479340 43.878 98 52 2 157 254 41 135 1.84e-20 85.1
MS.gene061468.t1 MTR_8g032640 34.706 170 103 4 17 184 33 196 7.55e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061468.t1 AT4G28850 66.667 258 85 1 3 259 35 292 2.03e-136 386
MS.gene061468.t1 AT5G57530 58.661 254 99 3 3 254 33 282 2.35e-101 297
MS.gene061468.t1 AT5G57540 56.693 254 104 3 3 254 32 281 2.55e-98 289
MS.gene061468.t1 AT5G57560 54.440 259 111 4 3 257 29 284 1.43e-96 285
MS.gene061468.t1 AT5G57550 56.299 254 102 3 3 254 36 282 1.78e-96 284
MS.gene061468.t1 AT3G23730 51.550 258 123 1 3 258 33 290 7.60e-96 283
MS.gene061468.t1 AT4G25810 54.651 258 111 3 3 257 32 286 1.23e-95 282
MS.gene061468.t1 AT2G18800 53.759 266 106 5 3 254 34 296 2.16e-95 282
MS.gene061468.t1 AT4G14130 50.379 264 114 3 3 258 34 288 3.57e-93 276
MS.gene061468.t1 AT4G25820 53.640 261 101 4 3 254 36 285 6.37e-93 275
MS.gene061468.t1 AT4G30270 52.209 249 101 2 6 254 35 265 3.60e-91 270
MS.gene061468.t1 AT4G03210 49.004 251 126 2 4 254 36 284 7.93e-89 265
MS.gene061468.t1 AT5G13870 49.804 255 122 4 2 254 37 287 2.09e-88 264
MS.gene061468.t1 AT5G13870 49.804 255 122 4 2 254 37 287 2.09e-88 264
MS.gene061468.t1 AT5G13870 49.804 255 122 4 2 254 37 287 2.09e-88 264
MS.gene061468.t1 AT5G48070 52.282 241 107 3 14 254 49 281 1.56e-87 261
MS.gene061468.t1 AT2G06850 49.802 253 121 4 4 254 42 290 2.75e-86 259
MS.gene061468.t1 AT4G37800 49.412 255 121 5 3 254 40 289 2.47e-84 254
MS.gene061468.t1 AT4G30290 51.373 255 113 4 3 254 30 276 2.16e-83 251
MS.gene061468.t1 AT2G14620 46.875 256 132 2 1 254 41 294 5.29e-83 251
MS.gene061468.t1 AT5G65730 48.221 253 123 5 5 254 43 290 8.33e-83 250
MS.gene061468.t1 AT4G03210 50.667 225 109 2 30 254 34 256 2.58e-82 248
MS.gene061468.t1 AT2G06850 50.435 230 110 3 25 254 5 230 5.14e-81 243
MS.gene061468.t1 AT4G30280 51.528 229 103 3 26 254 61 281 9.79e-81 244
MS.gene061468.t1 AT2G14620 49.153 236 115 2 19 254 14 244 4.69e-80 241
MS.gene061468.t1 AT2G14620 50.000 222 109 1 33 254 14 233 3.77e-79 239
MS.gene061468.t1 AT1G65310 51.092 229 104 3 26 254 61 281 6.61e-79 239
MS.gene061468.t1 AT1G65310 51.739 230 101 4 26 254 83 303 8.05e-79 240
MS.gene061468.t1 AT4G13090 47.451 255 127 5 3 254 38 288 7.14e-78 237
MS.gene061468.t1 AT1G11545 44.402 259 134 5 3 254 44 299 5.39e-75 230
MS.gene061468.t1 AT3G25050 45.703 256 130 7 3 255 41 290 5.61e-75 230
MS.gene061468.t1 AT4G13080 45.882 255 127 6 3 254 45 291 1.90e-73 226
MS.gene061468.t1 AT3G44990 39.535 258 137 7 5 254 47 293 9.14e-60 191
MS.gene061468.t1 AT2G36870 40.000 260 137 7 5 256 51 299 1.02e-57 186
MS.gene061468.t1 AT1G10550 36.398 261 153 6 5 254 51 309 2.77e-51 170
MS.gene061468.t1 AT1G32170 37.405 262 144 10 5 254 40 293 3.46e-48 163
MS.gene061468.t1 AT3G48580 36.220 254 142 9 2 254 39 273 1.04e-47 159
MS.gene061468.t1 AT1G14720 35.135 259 152 7 5 254 39 290 4.94e-47 159
MS.gene061468.t1 AT2G01850 35.081 248 147 6 14 254 50 290 6.20e-47 159
MS.gene061468.t1 AT4G18990 35.178 253 147 5 17 254 62 312 7.64e-46 157
MS.gene061468.t1 AT3G48580 34.783 230 131 8 25 254 4 214 3.83e-41 141
MS.gene061468.t1 AT4G18990 35.821 201 115 4 66 254 40 238 2.22e-39 138
MS.gene061468.t1 AT2G36870 46.875 128 60 2 5 124 51 178 4.73e-33 119
MS.gene061468.t1 AT3G48580 32.283 254 132 10 2 254 39 253 1.23e-32 120

Find 65 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCCTAAAATGATTGAATT+TGG 0.149775 6.1:-77482217 None:intergenic
ACAAAGATACCATTCTTATT+TGG 0.154842 6.1:+77480792 MS.gene061468:CDS
TGAAAGTTTACACAAGTTTA+TGG 0.162367 6.1:+77482127 MS.gene061468:CDS
CGTGATACCAAAAGATTTAA+TGG 0.220099 6.1:+77482396 MS.gene061468:CDS
CTCAATTAGGTCAAATGAAT+TGG 0.230910 6.1:+77482340 MS.gene061468:CDS
TAGTTTCTGAATACCCTAAT+TGG 0.268420 6.1:-77482066 None:intergenic
ACTTTCATTCCTTGCTTGTT+TGG 0.270123 6.1:-77482111 None:intergenic
CATTTGACCATTAAATCTTT+TGG 0.275194 6.1:-77482403 None:intergenic
CTTTAAATATAGCTTCAAAT+TGG 0.283566 6.1:+77482283 MS.gene061468:CDS
CTTTCATTCCTTGCTTGTTT+GGG 0.284686 6.1:-77482110 None:intergenic
AATTGTGCCTTGAAACATTC+AGG 0.294572 6.1:-77482429 None:intergenic
ATATTGATAGTATACCAATT+AGG 0.297472 6.1:+77482052 MS.gene061468:CDS
GTGGACTTGTTAAGACAAAT+TGG 0.298616 6.1:+77482175 MS.gene061468:CDS
TTAGGGCAAGAGCTTGTAAA+TGG 0.303223 6.1:+77482232 MS.gene061468:CDS
TGCTCAACATGCATTACTTC+AGG 0.315377 6.1:+77480197 MS.gene061468:CDS
TTCTCCTACATACAAACAAT+TGG 0.317516 6.1:+77482311 MS.gene061468:CDS
CAATTGGGTTATGCTCAATT+AGG 0.347787 6.1:+77482327 MS.gene061468:CDS
CAATTTGATTCGTGATTCAA+TGG 0.364662 6.1:-77480817 None:intergenic
CTTGTGTTGGATAAAACTTC+AGG 0.373087 6.1:+77480234 MS.gene061468:CDS
CATTGAATCACGAATCAAAT+TGG 0.377433 6.1:+77480818 MS.gene061468:CDS
GTTTATGGAATGCAGATGAT+TGG 0.389692 6.1:+77482142 MS.gene061468:CDS
TATAGTTGAACTTACATAGT+AGG 0.393405 6.1:-77480871 None:intergenic
AATGTATACACACAAGGAAA+TGG 0.402004 6.1:+77481059 MS.gene061468:CDS
TATTGATAGTATACCAATTA+GGG 0.404217 6.1:+77482053 MS.gene061468:CDS
GAGTTCTTAGGAAATAGTTC+AGG 0.427126 6.1:+77481014 MS.gene061468:CDS
ACATTTGTATGAACAATGTA+AGG 0.437791 6.1:-77481041 None:intergenic
CCAAAAGCATGTATATTACA+TGG 0.438084 6.1:+77480172 None:intergenic
TAAATATAGCTTCAAATTGG+TGG 0.440874 6.1:+77482286 MS.gene061468:CDS
TAACCCAATTGTTTGTATGT+AGG 0.448771 6.1:-77482315 None:intergenic
AATGCCTCCTGAATGTTTCA+AGG 0.456192 6.1:+77482422 MS.gene061468:CDS
TTCATAACTATACTATCCAT+TGG 0.462357 6.1:+77481129 MS.gene061468:CDS
CTTAACAAGTCCACCTCTTG+TGG 0.471870 6.1:-77482166 None:intergenic
TTTATGGAATGCAGATGATT+GGG 0.473254 6.1:+77482143 MS.gene061468:CDS
TCAATTAGGTCAAATGAATT+GGG 0.474336 6.1:+77482341 MS.gene061468:CDS
TTGGTCCCTGGTAATTCTGC+AGG 0.498046 6.1:+77480837 MS.gene061468:CDS
ACACACAAGGAAATGGAAGT+AGG 0.498892 6.1:+77481066 MS.gene061468:CDS
CACACAAGGAAATGGAAGTA+GGG 0.500306 6.1:+77481067 MS.gene061468:CDS
TCAACTTACACAATTTCAGT+AGG 0.500345 6.1:-77481155 None:intergenic
TCTCCTACATACAAACAATT+GGG 0.500434 6.1:+77482312 MS.gene061468:CDS
ATTCAGAAACTATGAAAATG+AGG 0.505200 6.1:+77482077 MS.gene061468:CDS
TGATTGAATTTGGCTACAAA+TGG 0.508974 6.1:-77482207 None:intergenic
CTCATCATGTTGGCTTCCTG+TGG 0.509663 6.1:-77480982 None:intergenic
ACTGTTCCTGCAGAATTACC+AGG 0.516135 6.1:-77480843 None:intergenic
TAGTTATGAAAATCAGCAGT+TGG 0.519542 6.1:-77481116 None:intergenic
CAATTTCAGTAGGGTTCCAA+TGG 0.525109 6.1:-77481145 None:intergenic
TCAATGGTTCCAAATAAGAA+TGG 0.531417 6.1:-77480801 None:intergenic
ATCATGTTGGCTTCCTGTGG+AGG 0.534512 6.1:-77480979 None:intergenic
CAACTTACACAATTTCAGTA+GGG 0.545491 6.1:-77481154 None:intergenic
TGAAGATCTCCAACTTGTGT+TGG 0.549817 6.1:+77480221 MS.gene061468:CDS
AGTTATGAAAATCAGCAGTT+GGG 0.554006 6.1:-77481115 None:intergenic
GCTCAACATGCATTACTTCA+GGG 0.554741 6.1:+77480198 MS.gene061468:CDS
AAGCTATATTTAAAGCACAT+TGG 0.557304 6.1:-77482275 None:intergenic
CAAAAGCATGTATATTACAT+GGG 0.559154 6.1:+77480173 None:intergenic
GATGATTGGGCCACAAGAGG+TGG 0.559220 6.1:+77482156 MS.gene061468:CDS
TCACGAATCAAATTGGTCCC+TGG 0.562979 6.1:+77480825 MS.gene061468:CDS
GCAAGAGCTTGTAAATGGAA+TGG 0.563028 6.1:+77482237 MS.gene061468:CDS
CAAAATCTATCTCATCATGT+TGG 0.568146 6.1:-77480992 None:intergenic
GCAGATGATTGGGCCACAAG+AGG 0.605501 6.1:+77482153 MS.gene061468:CDS
TTCAGAAACTATGAAAATGA+GGG 0.605928 6.1:+77482078 MS.gene061468:CDS
TGTGTGCAGCTATCCTCCAC+AGG 0.610193 6.1:+77480966 MS.gene061468:intron
ATTGCATACCCAAACAAGCA+AGG 0.626861 6.1:+77482102 MS.gene061468:CDS
CATACAAATGTATACACACA+AGG 0.631731 6.1:+77481053 MS.gene061468:CDS
AAAAGCATGTATATTACATG+GGG 0.648450 6.1:+77480174 None:intergenic
TGTGCCTTGAAACATTCAGG+AGG 0.693280 6.1:-77482426 None:intergenic
CTGTTCCTGCAGAATTACCA+GGG 0.714476 6.1:-77480842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAATTTAAATTTACATA+AGG + chr6.1:77480909-77480928 MS.gene061468:intron 10.0%
!! TGATATATAAAACATTAAAA+AGG - chr6.1:77482002-77482021 None:intergenic 10.0%
!!! TTTTAATGTTTTATATATCA+TGG + chr6.1:77482002-77482021 MS.gene061468:intron 10.0%
!!! TTTTTTTATTAATCAAACTT+AGG + chr6.1:77480467-77480486 MS.gene061468:intron 10.0%
!!! AAACGTAAATTTTTAATAAG+TGG + chr6.1:77481259-77481278 MS.gene061468:intron 15.0%
!!! AACGTAAATTTTTAATAAGT+GGG + chr6.1:77481260-77481279 MS.gene061468:intron 15.0%
!!! CATATATAAAATTTGAAATG+CGG - chr6.1:77481464-77481483 None:intergenic 15.0%
!! AAAAATTTACGTTTAGTTGA+TGG - chr6.1:77481253-77481272 None:intergenic 20.0%
!! AAAATTAGAAAATAAGCATG+AGG + chr6.1:77481860-77481879 MS.gene061468:intron 20.0%
!! AAATTAGAAAATAAGCATGA+GGG + chr6.1:77481861-77481880 MS.gene061468:intron 20.0%
!! ACTTTCTTATAGAAATGAAA+AGG - chr6.1:77481969-77481988 None:intergenic 20.0%
!! CTTTAAATATAGCTTCAAAT+TGG + chr6.1:77482283-77482302 MS.gene061468:CDS 20.0%
!! TCAACTTAACATGAAATATA+TGG + chr6.1:77480733-77480752 MS.gene061468:intron 20.0%
!! TTAATGTGTCAATTTGATAT+AGG - chr6.1:77481540-77481559 None:intergenic 20.0%
!!! ATATTGATAGTATACCAATT+AGG + chr6.1:77482052-77482071 MS.gene061468:CDS 20.0%
!!! TATTGATAGTATACCAATTA+GGG + chr6.1:77482053-77482072 MS.gene061468:CDS 20.0%
!!! TCATTTCTATAAGAAAGTAT+TGG + chr6.1:77481971-77481990 MS.gene061468:intron 20.0%
!!! TGTAATTAATTTTGTAAGCA+TGG + chr6.1:77480383-77480402 MS.gene061468:intron 20.0%
! ACAAAGATACCATTCTTATT+TGG + chr6.1:77480792-77480811 MS.gene061468:CDS 25.0%
! ACATTTGTATGAACAATGTA+AGG - chr6.1:77481044-77481063 None:intergenic 25.0%
! ACTTAACATGAAATATATGG+TGG + chr6.1:77480736-77480755 MS.gene061468:intron 25.0%
! ATTCAGAAACTATGAAAATG+AGG + chr6.1:77482077-77482096 MS.gene061468:CDS 25.0%
! TAAATATAGCTTCAAATTGG+TGG + chr6.1:77482286-77482305 MS.gene061468:CDS 25.0%
! TATAGTTGAACTTACATAGT+AGG - chr6.1:77480874-77480893 None:intergenic 25.0%
! TCAATTAGGTCAAATGAATT+GGG + chr6.1:77482341-77482360 MS.gene061468:CDS 25.0%
! TGAAAGTTTACACAAGTTTA+TGG + chr6.1:77482127-77482146 MS.gene061468:CDS 25.0%
! TTCAGAAACTATGAAAATGA+GGG + chr6.1:77482078-77482097 MS.gene061468:CDS 25.0%
! TTCATAACTATACTATCCAT+TGG + chr6.1:77481129-77481148 MS.gene061468:CDS 25.0%
!! AAGCTAATATTTGAAGCTTT+CGG + chr6.1:77481735-77481754 MS.gene061468:intron 25.0%
!! AAGCTATATTTAAAGCACAT+TGG - chr6.1:77482278-77482297 None:intergenic 25.0%
!! AGCCAAATTCAATCATTTTA+GGG + chr6.1:77482215-77482234 MS.gene061468:CDS 25.0%
!! CATTTGACCATTAAATCTTT+TGG - chr6.1:77482406-77482425 None:intergenic 25.0%
!! TAGCCAAATTCAATCATTTT+AGG + chr6.1:77482214-77482233 MS.gene061468:CDS 25.0%
!!! TTCACATTTTTTTTTACCAC+AGG + chr6.1:77482025-77482044 MS.gene061468:intron 25.0%
AAACTCTGCTATGTATTCAT+TGG + chr6.1:77481187-77481206 MS.gene061468:intron 30.0%
AATGTATACACACAAGGAAA+TGG + chr6.1:77481059-77481078 MS.gene061468:CDS 30.0%
ACTATCCCACATTATGATTA+TGG - chr6.1:77480530-77480549 None:intergenic 30.0%
AGTTATGAAAATCAGCAGTT+GGG - chr6.1:77481118-77481137 None:intergenic 30.0%
ATAATCATAATGTGGGATAG+TGG + chr6.1:77480529-77480548 MS.gene061468:intron 30.0%
ATTACCCCATAATCATAATG+TGG + chr6.1:77480521-77480540 MS.gene061468:intron 30.0%
CAAAATCTATCTCATCATGT+TGG - chr6.1:77480995-77481014 None:intergenic 30.0%
CAACTTACACAATTTCAGTA+GGG - chr6.1:77481157-77481176 None:intergenic 30.0%
CATACAAATGTATACACACA+AGG + chr6.1:77481053-77481072 MS.gene061468:CDS 30.0%
CATTGAATCACGAATCAAAT+TGG + chr6.1:77480818-77480837 MS.gene061468:CDS 30.0%
CGTGATACCAAAAGATTTAA+TGG + chr6.1:77482396-77482415 MS.gene061468:CDS 30.0%
CTATCCCACATTATGATTAT+GGG - chr6.1:77480529-77480548 None:intergenic 30.0%
CTCAATTAGGTCAAATGAAT+TGG + chr6.1:77482340-77482359 MS.gene061468:CDS 30.0%
TAACCCAATTGTTTGTATGT+AGG - chr6.1:77482318-77482337 None:intergenic 30.0%
TAATCATAATGTGGGATAGT+GGG + chr6.1:77480530-77480549 MS.gene061468:intron 30.0%
TAATTACTGATAAGTAGCCA+AGG - chr6.1:77480630-77480649 None:intergenic 30.0%
TAGTTATGAAAATCAGCAGT+TGG - chr6.1:77481119-77481138 None:intergenic 30.0%
TAGTTTCTGAATACCCTAAT+TGG - chr6.1:77482069-77482088 None:intergenic 30.0%
TATCCCACATTATGATTATG+GGG - chr6.1:77480528-77480547 None:intergenic 30.0%
TCAACTTACACAATTTCAGT+AGG - chr6.1:77481158-77481177 None:intergenic 30.0%
TCAATGGTTCCAAATAAGAA+TGG - chr6.1:77480804-77480823 None:intergenic 30.0%
TCTCCTACATACAAACAATT+GGG + chr6.1:77482312-77482331 MS.gene061468:CDS 30.0%
TGAAAAAGAGTTCGTTACAT+TGG - chr6.1:77481585-77481604 None:intergenic 30.0%
TGATTGAATTTGGCTACAAA+TGG - chr6.1:77482210-77482229 None:intergenic 30.0%
TGCCCTAAAATGATTGAATT+TGG - chr6.1:77482220-77482239 None:intergenic 30.0%
TTACCCCATAATCATAATGT+GGG + chr6.1:77480522-77480541 MS.gene061468:intron 30.0%
TTCTCCTACATACAAACAAT+TGG + chr6.1:77482311-77482330 MS.gene061468:CDS 30.0%
TTTATGGAATGCAGATGATT+GGG + chr6.1:77482143-77482162 MS.gene061468:CDS 30.0%
! AAATCACGACAATTTTGCTT+TGG - chr6.1:77481711-77481730 None:intergenic 30.0%
! AGCTAATATTTGAAGCTTTC+GGG + chr6.1:77481736-77481755 MS.gene061468:intron 30.0%
! CAATTTGATTCGTGATTCAA+TGG - chr6.1:77480820-77480839 None:intergenic 30.0%
!! AAGTTTTATCCAACACAAGT+TGG - chr6.1:77480233-77480252 None:intergenic 30.0%
!!! ACATTTTTTTTTACCACAGG+TGG + chr6.1:77482028-77482047 MS.gene061468:intron 30.0%
!!! GAGATAGATTTTGAGTTCTT+AGG + chr6.1:77481002-77481021 MS.gene061468:CDS 30.0%
AAACTAAACGGGCACTAAAT+CGG - chr6.1:77481652-77481671 None:intergenic 35.0%
AATTGTGCCTTGAAACATTC+AGG - chr6.1:77482432-77482451 None:intergenic 35.0%
ACATGGGTTTATGGAAAAAG+TGG + chr6.1:77481762-77481781 MS.gene061468:intron 35.0%
ACCAACTGAGTTATGTTCAT+GGG + chr6.1:77481332-77481351 MS.gene061468:intron 35.0%
ACTTGCATTGTTATATGCAG+GGG - chr6.1:77481308-77481327 None:intergenic 35.0%
ACTTTCATTCCTTGCTTGTT+TGG - chr6.1:77482114-77482133 None:intergenic 35.0%
ATGAACATAACTCAGTTGGT+AGG - chr6.1:77481332-77481351 None:intergenic 35.0%
ATGCAAACTCCAAACTAAAC+GGG - chr6.1:77481663-77481682 None:intergenic 35.0%
CAATTGGGTTATGCTCAATT+AGG + chr6.1:77482327-77482346 MS.gene061468:CDS 35.0%
CTTGTGTTGGATAAAACTTC+AGG + chr6.1:77480234-77480253 MS.gene061468:CDS 35.0%
CTTTCATTCCTTGCTTGTTT+GGG - chr6.1:77482113-77482132 None:intergenic 35.0%
GACTTGCATTGTTATATGCA+GGG - chr6.1:77481309-77481328 None:intergenic 35.0%
GAGTTCTTAGGAAATAGTTC+AGG + chr6.1:77481014-77481033 MS.gene061468:CDS 35.0%
GATGCAAACTCCAAACTAAA+CGG - chr6.1:77481664-77481683 None:intergenic 35.0%
GTTTATGGAATGCAGATGAT+TGG + chr6.1:77482142-77482161 MS.gene061468:CDS 35.0%
TACCAACTGAGTTATGTTCA+TGG + chr6.1:77481331-77481350 MS.gene061468:intron 35.0%
TACTATCAATATACCACCTG+TGG - chr6.1:77482044-77482063 None:intergenic 35.0%
TTTAATAAGTGGGATGTCTG+AGG + chr6.1:77481270-77481289 MS.gene061468:intron 35.0%
! GGGAGCAACAATTTTATCTT+TGG + chr6.1:77481087-77481106 MS.gene061468:CDS 35.0%
! TGAACATAACTCAGTTGGTA+GGG - chr6.1:77481331-77481350 None:intergenic 35.0%
!! GTGGACTTGTTAAGACAAAT+TGG + chr6.1:77482175-77482194 MS.gene061468:CDS 35.0%
!! TGGTGTTACATTTGAATTGC+AGG + chr6.1:77480756-77480775 MS.gene061468:intron 35.0%
AATGCCTCCTGAATGTTTCA+AGG + chr6.1:77482422-77482441 MS.gene061468:CDS 40.0%
ACACACAAGGAAATGGAAGT+AGG + chr6.1:77481066-77481085 MS.gene061468:CDS 40.0%
ATTGCATACCCAAACAAGCA+AGG + chr6.1:77482102-77482121 MS.gene061468:CDS 40.0%
CAATTTCAGTAGGGTTCCAA+TGG - chr6.1:77481148-77481167 None:intergenic 40.0%
CACACAAGGAAATGGAAGTA+GGG + chr6.1:77481067-77481086 MS.gene061468:CDS 40.0%
CCAACTGAGTTATGTTCATG+GGG + chr6.1:77481333-77481352 MS.gene061468:intron 40.0%
GATTTAGTGCCCGTTTAGTT+TGG + chr6.1:77481651-77481670 MS.gene061468:intron 40.0%
GCAAGAGCTTGTAAATGGAA+TGG + chr6.1:77482237-77482256 MS.gene061468:CDS 40.0%
GCTCAACATGCATTACTTCA+GGG + chr6.1:77480198-77480217 MS.gene061468:CDS 40.0%
GGACTTGCATTGTTATATGC+AGG - chr6.1:77481310-77481329 None:intergenic 40.0%
TCACAACCCAACAAACGATT+GGG + chr6.1:77480575-77480594 MS.gene061468:intron 40.0%
TGAAGATCTCCAACTTGTGT+TGG + chr6.1:77480221-77480240 MS.gene061468:CDS 40.0%
TGCTCAACATGCATTACTTC+AGG + chr6.1:77480197-77480216 MS.gene061468:CDS 40.0%
TTACATTGGTCGCTTCAAAG+TGG - chr6.1:77481571-77481590 None:intergenic 40.0%
TTAGGGCAAGAGCTTGTAAA+TGG + chr6.1:77482232-77482251 MS.gene061468:CDS 40.0%
! TTCGGGTTAACATGGGTTTA+TGG + chr6.1:77481753-77481772 MS.gene061468:intron 40.0%
!! TGAAGCTTTCGGGTTAACAT+GGG + chr6.1:77481746-77481765 MS.gene061468:intron 40.0%
!! TTGAAGCTTTCGGGTTAACA+TGG + chr6.1:77481745-77481764 MS.gene061468:intron 40.0%
AACGATTGGGTCAAGCATGA+AGG + chr6.1:77480588-77480607 MS.gene061468:intron 45.0%
ACTGTTCCTGCAGAATTACC+AGG - chr6.1:77480846-77480865 None:intergenic 45.0%
ATTGGGTCAAGCATGAAGGA+CGG + chr6.1:77480592-77480611 MS.gene061468:intron 45.0%
CATTGTTATATGCAGGGGTC+AGG - chr6.1:77481303-77481322 None:intergenic 45.0%
CCCCATGAACATAACTCAGT+TGG - chr6.1:77481336-77481355 None:intergenic 45.0%
CTGTTCCTGCAGAATTACCA+GGG - chr6.1:77480845-77480864 None:intergenic 45.0%
CTTAACAAGTCCACCTCTTG+TGG - chr6.1:77482169-77482188 None:intergenic 45.0%
GCTTGACCCAATCGTTTGTT+GGG - chr6.1:77480584-77480603 None:intergenic 45.0%
GTCACAACCCAACAAACGAT+TGG + chr6.1:77480574-77480593 MS.gene061468:intron 45.0%
GTCGCTTCAAAGTGGTCATT+TGG - chr6.1:77481563-77481582 None:intergenic 45.0%
TCACGAATCAAATTGGTCCC+TGG + chr6.1:77480825-77480844 MS.gene061468:CDS 45.0%
TGCTTGACCCAATCGTTTGT+TGG - chr6.1:77480585-77480604 None:intergenic 45.0%
TGTGCCTTGAAACATTCAGG+AGG - chr6.1:77482429-77482448 None:intergenic 45.0%
! ATCCACAAAAGCACGTATGC+GGG + chr6.1:77481681-77481700 MS.gene061468:intron 45.0%
! ATCGTTTGTTGGGTTGTGAC+CGG - chr6.1:77480574-77480593 None:intergenic 45.0%
! CATCCACAAAAGCACGTATG+CGG + chr6.1:77481680-77481699 MS.gene061468:intron 45.0%
!! TCATAATGTGGGATAGTGGG+AGG + chr6.1:77480533-77480552 MS.gene061468:intron 45.0%
!!! TATATGAATTTTTTTTATAA+AGG + chr6.1:77480346-77480365 MS.gene061468:intron 5.0%
!!! TTTAAATTTATGTTATTTAT+TGG - chr6.1:77480901-77480920 None:intergenic 5.0%
TTGGTCCCTGGTAATTCTGC+AGG + chr6.1:77480837-77480856 MS.gene061468:CDS 50.0%
! ATCCCGCATACGTGCTTTTG+TGG - chr6.1:77481686-77481705 None:intergenic 50.0%
! TCGTTTGTTGGGTTGTGACC+GGG - chr6.1:77480573-77480592 None:intergenic 50.0%
!! ATCATGTTGGCTTCCTGTGG+AGG - chr6.1:77480982-77481001 None:intergenic 50.0%
!! CTCATCATGTTGGCTTCCTG+TGG - chr6.1:77480985-77481004 None:intergenic 50.0%
GATGATTGGGCCACAAGAGG+TGG + chr6.1:77482156-77482175 MS.gene061468:CDS 55.0%
GCAGATGATTGGGCCACAAG+AGG + chr6.1:77482153-77482172 MS.gene061468:CDS 55.0%
TGTGTGCAGCTATCCTCCAC+AGG + chr6.1:77480966-77480985 MS.gene061468:intron 55.0%
! CGTTTGTTGGGTTGTGACCG+GGG - chr6.1:77480572-77480591 None:intergenic 55.0%
GACGGTCGCTCTAGCGACCT+TGG + chr6.1:77480610-77480629 MS.gene061468:intron 65.0%
GAGGTTTCGCCTCTGCACCC+CGG + chr6.1:77480552-77480571 MS.gene061468:intron 65.0%
GGGTTGTGACCGGGGTGCAG+AGG - chr6.1:77480564-77480583 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 77480180 77482455 77480180 ID=MS.gene061468
chr6.1 mRNA 77480180 77482455 77480180 ID=MS.gene061468.t1;Parent=MS.gene061468
chr6.1 exon 77480180 77480255 77480180 ID=MS.gene061468.t1.exon1;Parent=MS.gene061468.t1
chr6.1 CDS 77480180 77480255 77480180 ID=cds.MS.gene061468.t1;Parent=MS.gene061468.t1
chr6.1 exon 77480778 77480878 77480778 ID=MS.gene061468.t1.exon2;Parent=MS.gene061468.t1
chr6.1 CDS 77480778 77480878 77480778 ID=cds.MS.gene061468.t1;Parent=MS.gene061468.t1
chr6.1 exon 77480975 77481168 77480975 ID=MS.gene061468.t1.exon3;Parent=MS.gene061468.t1
chr6.1 CDS 77480975 77481168 77480975 ID=cds.MS.gene061468.t1;Parent=MS.gene061468.t1
chr6.1 exon 77482047 77482455 77482047 ID=MS.gene061468.t1.exon4;Parent=MS.gene061468.t1
chr6.1 CDS 77482047 77482455 77482047 ID=cds.MS.gene061468.t1;Parent=MS.gene061468.t1
Gene Sequence

>MS.gene061468

ATGTATATTACATGGGGTGCTCAACATGCATTACTTCAGGGTGAAGATCTCCAACTTGTGTTGGATAAAACTTCAGGTAAAATTAAATTATGTACTTATAACTTGCATTAAATTTAATTAGATTATATAAAAAAATATTACTTAGATTATATGTTTGCTTTTGTAATATATGAATTTTTTTTATAAAGGAAATAATTTATAGTTGTAATTAATTTTGTAAGCATGGTGCATCTTTCAATATTTAGCAATTGAATGTCAAATAAATGAAAAAAAATTGTGATTCAAACTTTTTTTATTAATCAAACTTAGGTTTTTTTTCAATTGACGATTCAGTCTATAATATTACCCCATAATCATAATGTGGGATAGTGGGAGGTTTCGCCTCTGCACCCCGGTCACAACCCAACAAACGATTGGGTCAAGCATGAAGGACGGTCGCTCTAGCGACCTTGGCTACTTATCAGTAATTATGAATCATACATGATAATAAGAAATTTAATCAATGCGTAAACTATATATTTGAATATAAATAAGTAAATGAATTTTTCTTGTGTCAACTTAACATGAAATATATGGTGGTGTTACATTTGAATTGCAGGATCTGCAGCTCAAACAAAGATACCATTCTTATTTGGAACCATTGAATCACGAATCAAATTGGTCCCTGGTAATTCTGCAGGAACAGTTACAGCCTACTATGTAAGTTCAACTATAAGATCCAATAAATAACATAAATTTAAATTTACATAAGGTAAAAAATATGCTAATGTTTCATTTTCATAAAAATGTGTGCAGCTATCCTCCACAGGAAGCCAACATGATGAGATAGATTTTGAGTTCTTAGGAAATAGTTCAGGACAACCTTACATTGTTCATACAAATGTATACACACAAGGAAATGGAAGTAGGGAGCAACAATTTTATCTTTGGTTTGACCCAACTGCTGATTTTCATAACTATACTATCCATTGGAACCCTACTGAAATTGTGTAAGTTGATAAAATACTAAACTCTGCTATGTATTCATTGGCTTTAATTTTGATACACTATCATTATGAAGATTTTTTATACCATCAACTAAACGTAAATTTTTAATAAGTGGGATGTCTGAGGTTCGAATCCTGACCCCTGCATATAACAATGCAAGTCCCTACCAACTGAGTTATGTTCATGGGGACTTAAAAATGTTGACTTTAATCTTAATGATCTAAATATGATATATTTTCAATAGTTAAACTTAAATATATCATATGACATTGTTGTTAACTGATTATTAATGATCCGCATTTCAAATTTTATATATGATTATAATTTTTAAGCGTTTTGAAAGATGAAAATTCAGAGTTAAATATATTCTCCTATATCAAATTGACACATTAACCAAATGACCACTTTGAAGCGACCAATGTAACGAACTCTTTTTCAATTGATTGCAAAAGCAATCTCTAAATAGCTAAATGAGATTGTGTCCGATTTAGTGCCCGTTTAGTTTGGAGTTTGCATCCACAAAAGCACGTATGCGGGATTTCCAAAGCAAAATTGTCGTGATTTCTAAAAGCTAATATTTGAAGCTTTCGGGTTAACATGGGTTTATGGAAAAAGTGGTTTGCAAAACGCAGAAGCAAACAAACACTTAAAGATTGATTTGCAAAAAGTCATTAAAATACTACTCACTATGTTAAAATTAGAAAATAAGCATGAGGGATATAATACTTAAAAATCACATAAAATTATTTGTGATCAGTTGACATTGTAAAATATTATTTTTATAGTGCATATGATTTTTCCTTTTCATTTCTATAAGAAAGTATTGGTTACACCTTTTTAATGTTTTATATATCATGGTTCACATTTTTTTTTACCACAGGTGGTATATTGATAGTATACCAATTAGGGTATTCAGAAACTATGAAAATGAGGGCATTGCATACCCAAACAAGCAAGGAATGAAAGTTTACACAAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGACTTGTTAAGACAAATTGGACTAATGCACCATTTGTAGCCAAATTCAATCATTTTAGGGCAAGAGCTTGTAAATGGAATGGAGCAATTAGTATTAACCAATGTGCTTTAAATATAGCTTCAAATTGGTGGACTTCTCCTACATACAAACAATTGGGTTATGCTCAATTAGGTCAAATGAATTGGGTCAGAAATAACTATATGATCTATGATTATTGTCGTGATACCAAAAGATTTAATGGTCAAATGCCTCCTGAATGTTTCAAGGCACAATTCTAA
Protein sequence

>MS.gene061468.t1

MYITWGAQHALLQGEDLQLVLDKTSGSAAQTKIPFLFGTIESRIKLVPGNSAGTVTAYYLSSTGSQHDEIDFEFLGNSSGQPYIVHTNVYTQGNGSREQQFYLWFDPTADFHNYTIHWNPTEIVWYIDSIPIRVFRNYENEGIAYPNKQGMKVYTSLWNADDWATRGGLVKTNWTNAPFVAKFNHFRARACKWNGAISINQCALNIASNWWTSPTYKQLGYAQLGQMNWVRNNYMIYDYCRDTKRFNGQMPPECFKAQF