Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061814.t1 | XP_003601065.1 | 95.5 | 220 | 3 | 2 | 1 | 216 | 1 | 217 | 3.20E-109 | 404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061814.t1 | Q6IDL4 | 62.3 | 204 | 69 | 3 | 19 | 216 | 16 | 217 | 1.2e-67 | 257.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061814.t1 | B7FMU8 | 95.5 | 220 | 3 | 2 | 1 | 216 | 1 | 217 | 2.3e-109 | 404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene061814 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene051121 | MS.gene061814 | 0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene061814 | 0.802753 | 4.83E-49 | -1.69E-46 |
| MS.gene05454 | MS.gene061814 | 0.800403 | 1.47E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene061814 | 0.831601 | 1.52E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene061814 | 0.81936 | 1.21E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene061814 | 0.813079 | 3.07E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene061814 | 0.851589 | 8.04E-61 | -1.69E-46 |
| MS.gene060697 | MS.gene061814 | 0.848013 | 8.03E-60 | -1.69E-46 |
| MS.gene061188 | MS.gene061814 | 0.833559 | 4.98E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061814.t1 | MTR_3g072600 | 95.455 | 220 | 3 | 2 | 1 | 216 | 1 | 217 | 7.09e-154 | 425 |
| MS.gene061814.t1 | MTR_5g058140 | 75.789 | 190 | 37 | 3 | 32 | 216 | 27 | 212 | 9.55e-100 | 288 |
| MS.gene061814.t1 | MTR_8g088940 | 65.566 | 212 | 63 | 5 | 12 | 216 | 3 | 211 | 1.04e-89 | 263 |
| MS.gene061814.t1 | MTR_2g007210 | 61.244 | 209 | 69 | 4 | 13 | 216 | 5 | 206 | 1.85e-87 | 257 |
| MS.gene061814.t1 | MTR_8g088980 | 71.528 | 144 | 35 | 2 | 79 | 216 | 19 | 162 | 1.63e-72 | 217 |
| MS.gene061814.t1 | MTR_4g082315 | 44.330 | 194 | 99 | 4 | 31 | 216 | 24 | 216 | 3.26e-55 | 175 |
| MS.gene061814.t1 | MTR_6g012770 | 43.716 | 183 | 93 | 4 | 43 | 216 | 31 | 212 | 2.86e-51 | 165 |
| MS.gene061814.t1 | MTR_7g011490 | 36.058 | 208 | 124 | 4 | 17 | 216 | 6 | 212 | 1.61e-44 | 148 |
| MS.gene061814.t1 | MTR_5g042260 | 33.632 | 223 | 132 | 6 | 4 | 216 | 3 | 219 | 3.22e-40 | 137 |
| MS.gene061814.t1 | MTR_5g042320 | 37.705 | 183 | 102 | 6 | 44 | 216 | 43 | 223 | 1.82e-30 | 112 |
| MS.gene061814.t1 | MTR_5g042270 | 33.520 | 179 | 109 | 4 | 44 | 216 | 11 | 185 | 4.12e-27 | 102 |
| MS.gene061814.t1 | MTR_5g042320 | 37.584 | 149 | 80 | 6 | 44 | 186 | 43 | 184 | 4.61e-22 | 89.7 |
| MS.gene061814.t1 | MTR_1g102720 | 24.590 | 183 | 129 | 4 | 36 | 212 | 27 | 206 | 3.49e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061814.t1 | AT1G09580 | 61.951 | 205 | 70 | 3 | 18 | 216 | 15 | 217 | 7.51e-93 | 271 |
| MS.gene061814.t1 | AT1G57620 | 56.306 | 222 | 81 | 5 | 1 | 216 | 1 | 212 | 6.01e-87 | 256 |
| MS.gene061814.t1 | AT1G21900 | 61.538 | 208 | 72 | 4 | 16 | 216 | 10 | 216 | 1.27e-85 | 253 |
| MS.gene061814.t1 | AT3G10780 | 52.525 | 198 | 84 | 4 | 28 | 216 | 21 | 217 | 1.93e-63 | 196 |
| MS.gene061814.t1 | AT1G26690 | 39.904 | 208 | 112 | 5 | 17 | 216 | 12 | 214 | 3.43e-51 | 165 |
| MS.gene061814.t1 | AT1G14010 | 38.756 | 209 | 117 | 5 | 16 | 216 | 7 | 212 | 1.00e-48 | 159 |
| MS.gene061814.t1 | AT1G69460 | 41.117 | 197 | 105 | 5 | 29 | 216 | 20 | 214 | 1.70e-48 | 158 |
| MS.gene061814.t1 | AT2G03290 | 40.816 | 196 | 108 | 3 | 29 | 216 | 18 | 213 | 1.78e-48 | 158 |
| MS.gene061814.t1 | AT3G29070 | 38.342 | 193 | 110 | 4 | 32 | 216 | 34 | 225 | 6.82e-42 | 142 |
| MS.gene061814.t1 | AT2G03040 | 38.926 | 149 | 87 | 2 | 29 | 173 | 18 | 166 | 5.73e-34 | 119 |
| MS.gene061814.t1 | AT3G22845 | 25.683 | 183 | 127 | 4 | 36 | 212 | 28 | 207 | 2.03e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGACTCTGTTGCTAAAA+AGG | 0.253132 | 3.3:-65063314 | MS.gene061814:CDS |
| ATCGGCAACAACATAGTAAT+TGG | 0.296460 | 3.3:+65064618 | None:intergenic |
| GTCTCTTGGCGTATGCGTTT+CGG | 0.305564 | 3.3:-65062507 | MS.gene061814:CDS |
| GTAGCTATGTGGCATGCTTT+TGG | 0.326986 | 3.3:-65063405 | MS.gene061814:CDS |
| AGCAACAGAGTCCCAATCTT+TGG | 0.327971 | 3.3:+65063321 | None:intergenic |
| ATCTGTTATATTTAAAGAAC+AGG | 0.333875 | 3.3:-65063112 | MS.gene061814:intron |
| ATTAGTCTTGAATGGAAAAC+TGG | 0.334614 | 3.3:-65063352 | MS.gene061814:CDS |
| ACAATTCGTGTTCCTGAACT+TGG | 0.360761 | 3.3:+65064772 | None:intergenic |
| CTGGAATCTCTGCCAAAGAT+TGG | 0.361290 | 3.3:-65063333 | MS.gene061814:CDS |
| TGGTTAAGTATCCCCAGTTC+AGG | 0.366565 | 3.3:-65064688 | MS.gene061814:CDS |
| GTTCTTCAATTAGTCTTGAA+TGG | 0.366713 | 3.3:-65063360 | MS.gene061814:CDS |
| CTAAAACGACAACATGTGTT+TGG | 0.367209 | 3.3:+65064641 | None:intergenic |
| AACCAAATGGCCTTGGTTTG+AGG | 0.382119 | 3.3:+65064706 | None:intergenic |
| ACCAAATGGCCTTGGTTTGA+GGG | 0.400461 | 3.3:+65064707 | None:intergenic |
| AAAGGCTTCAACCCAAGTTC+AGG | 0.405800 | 3.3:-65064784 | MS.gene061814:CDS |
| TCCCTCAAACCAAGGCCATT+TGG | 0.405823 | 3.3:-65064708 | MS.gene061814:CDS |
| TTGTGAAGATTATTTCCATA+TGG | 0.419312 | 3.3:+65063478 | None:intergenic |
| TGTATCTGAGACGCTACTTT+CGG | 0.424544 | 3.3:-65062466 | MS.gene061814:CDS |
| GATACTTAACCAAATGGCCT+TGG | 0.444311 | 3.3:+65064699 | None:intergenic |
| CAACCATCGGTTATGGCAAA+AGG | 0.447602 | 3.3:-65064802 | None:intergenic |
| TGGAATCTCTGCCAAAGATT+GGG | 0.449888 | 3.3:-65063332 | MS.gene061814:CDS |
| CACGCACTTAGTTCCTGAAC+TGG | 0.458031 | 3.3:+65064675 | None:intergenic |
| TGTTGTTGCCGATAATATCC+AGG | 0.467878 | 3.3:-65064608 | MS.gene061814:CDS |
| TGTAAATGCAAATTGACCTT+GGG | 0.478123 | 3.3:+65063441 | None:intergenic |
| CTTGAGCTAAGGAAACTTGA+TGG | 0.478866 | 3.3:-65063158 | MS.gene061814:CDS |
| CATACCTTAGCAGAAATAGT+AGG | 0.479188 | 3.3:+65064574 | None:intergenic |
| AGGAACTAAGTGCGTGTCGC+AGG | 0.493989 | 3.3:-65064668 | MS.gene061814:CDS |
| CCCCAGGTGACATCTCCATA+TGG | 0.495395 | 3.3:-65063493 | MS.gene061814:intron |
| TTAAATATAACAGATTCTCA+TGG | 0.503411 | 3.3:+65063120 | None:intergenic |
| TTGTAAATGCAAATTGACCT+TGG | 0.510774 | 3.3:+65063440 | None:intergenic |
| TCAATTTGCATTTACAACTA+CGG | 0.519360 | 3.3:-65063434 | MS.gene061814:CDS |
| TAGTAGGAAGTGGGTGACCC+TGG | 0.521407 | 3.3:+65064590 | None:intergenic |
| TGGGTGACCCTGGATATTAT+CGG | 0.530206 | 3.3:+65064600 | None:intergenic |
| CAATTCGTGTTCCTGAACTT+GGG | 0.533317 | 3.3:+65064773 | None:intergenic |
| ACTTCCTACTATTTCTGCTA+AGG | 0.538663 | 3.3:-65064578 | MS.gene061814:intron |
| ACGCACTTAGTTCCTGAACT+GGG | 0.540090 | 3.3:+65064676 | None:intergenic |
| ACTGGGGATACTTAACCAAA+TGG | 0.541125 | 3.3:+65064693 | None:intergenic |
| TGGTTCAGTATAATGTCTCT+TGG | 0.541189 | 3.3:-65062521 | MS.gene061814:CDS |
| AGGGTGTTGAACTTGAGCTA+AGG | 0.542132 | 3.3:-65063169 | MS.gene061814:CDS |
| GCAGAGATGAGAGAAGCAAA+TGG | 0.554070 | 3.3:-65062554 | MS.gene061814:CDS |
| ATATAACAGATTCTCATGGA+TGG | 0.555960 | 3.3:+65063124 | None:intergenic |
| TTAGCAGAAATAGTAGGAAG+TGG | 0.568794 | 3.3:+65064580 | None:intergenic |
| AACAATGAAAATGTTACCCA+AGG | 0.597853 | 3.3:-65063457 | MS.gene061814:CDS |
| TATTAATCTCCCTCAAACCA+AGG | 0.612415 | 3.3:-65064716 | MS.gene061814:CDS |
| GCATTTACAACTACGGAGAG+TGG | 0.623113 | 3.3:-65063427 | MS.gene061814:CDS |
| TACGGAGAGTGGTAGCTATG+TGG | 0.633734 | 3.3:-65063416 | MS.gene061814:CDS |
| TTGAGGGAGATTAATAAGCG+AGG | 0.637007 | 3.3:+65064723 | None:intergenic |
| TAGCAGAAATAGTAGGAAGT+GGG | 0.638507 | 3.3:+65064581 | None:intergenic |
| GTTGTTGCCGATAATATCCA+GGG | 0.640526 | 3.3:-65064607 | MS.gene061814:CDS |
| AAGCAAATGGCAGAGTTGCG+TGG | 0.651089 | 3.3:-65062541 | MS.gene061814:CDS |
| CGCACTTAGTTCCTGAACTG+GGG | 0.674873 | 3.3:+65064677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTCAAAGAAAGTT+GGG | - | chr3.3:65064522-65064541 | MS.gene061814:intron | 15.0% |
| !!! | AAAAGTTCAAAACAATTTTA+TGG | + | chr3.3:65064288-65064307 | None:intergenic | 15.0% |
| !!! | TATGCTTTATTATTTTTTCT+TGG | - | chr3.3:65062683-65062702 | MS.gene061814:intron | 15.0% |
| !!! | TTTTCATAAACTATATTAGA+TGG | + | chr3.3:65064318-65064337 | None:intergenic | 15.0% |
| !! | AAAAAAAACTACTACATTAG+TGG | + | chr3.3:65063229-65063248 | None:intergenic | 20.0% |
| !! | AAACTTAATGGTGTAAAATA+AGG | - | chr3.3:65062942-65062961 | MS.gene061814:intron | 20.0% |
| !! | AATTAAGATGTTTATCCAAA+TGG | - | chr3.3:65064444-65064463 | MS.gene061814:intron | 20.0% |
| !! | AATTCATATGAGTTAAACTA+AGG | - | chr3.3:65063180-65063199 | MS.gene061814:intron | 20.0% |
| !! | AATTTATTCAAAGAAAGTTG+GGG | - | chr3.3:65064523-65064542 | MS.gene061814:intron | 20.0% |
| !! | ATCTGTTATATTTAAAGAAC+AGG | - | chr3.3:65064126-65064145 | MS.gene061814:intron | 20.0% |
| !! | ATTAAGATGTTTATCCAAAT+GGG | - | chr3.3:65064445-65064464 | MS.gene061814:intron | 20.0% |
| !! | CAAATTTATTCAAAGAAAGT+TGG | - | chr3.3:65064521-65064540 | MS.gene061814:intron | 20.0% |
| !! | CTATAACAAAAGATGAAATA+AGG | + | chr3.3:65064371-65064390 | None:intergenic | 20.0% |
| !! | TAACTCAACTAATACATTTA+TGG | - | chr3.3:65063479-65063498 | MS.gene061814:CDS | 20.0% |
| !! | TTAAATATAACAGATTCTCA+TGG | + | chr3.3:65064121-65064140 | None:intergenic | 20.0% |
| !!! | AATACATTTATGGTTTGTTT+AGG | - | chr3.3:65063489-65063508 | MS.gene061814:CDS | 20.0% |
| !!! | ATTTAAAGTTTCTTCAACTT+AGG | - | chr3.3:65062792-65062811 | MS.gene061814:intron | 20.0% |
| !!! | ATTTTTTTTGCACATTGTAT+AGG | - | chr3.3:65064658-65064677 | MS.gene061814:CDS | 20.0% |
| !!! | GGATTATAAATTTGTTTATG+AGG | - | chr3.3:65062813-65062832 | MS.gene061814:intron | 20.0% |
| !!! | TGAGATCTTTTTATTAAGTT+GGG | - | chr3.3:65064493-65064512 | MS.gene061814:intron | 20.0% |
| !!! | TTTGATCTTTATGCTTTATT+TGG | - | chr3.3:65062743-65062762 | MS.gene061814:intron | 20.0% |
| !!! | TTTTTTTTGCACATTGTATA+GGG | - | chr3.3:65064659-65064678 | MS.gene061814:CDS | 20.0% |
| ! | AATATGTGGTTAATTACATC+CGG | - | chr3.3:65063086-65063105 | MS.gene061814:intron | 25.0% |
| ! | ACAACACATGTAAGAAAATT+CGG | + | chr3.3:65063358-65063377 | None:intergenic | 25.0% |
| ! | ACCATTAAGTTTAAAGAACA+AGG | + | chr3.3:65062934-65062953 | None:intergenic | 25.0% |
| ! | ATCCCATATAGATATTACAA+AGG | + | chr3.3:65063995-65064014 | None:intergenic | 25.0% |
| ! | ATTCAACGTCAATACAAATT+TGG | + | chr3.3:65062860-65062879 | None:intergenic | 25.0% |
| ! | ATTTGTTTATGAGGCTAATA+GGG | - | chr3.3:65062822-65062841 | MS.gene061814:intron | 25.0% |
| ! | GAAAATAGCTTATAGCTAAT+AGG | - | chr3.3:65064333-65064352 | MS.gene061814:intron | 25.0% |
| ! | GGATGGTAAATAGATATATT+AGG | - | chr3.3:65063110-65063129 | MS.gene061814:intron | 25.0% |
| ! | TAAAGAACAAGGATGAAATT+TGG | + | chr3.3:65062923-65062942 | None:intergenic | 25.0% |
| ! | TCAATTTGCATTTACAACTA+CGG | - | chr3.3:65063804-65063823 | MS.gene061814:intron | 25.0% |
| ! | TCCTTGTTCTTTAAACTTAA+TGG | - | chr3.3:65062930-65062949 | MS.gene061814:intron | 25.0% |
| ! | TGCCTTTGTAATATCTATAT+GGG | - | chr3.3:65063990-65064009 | MS.gene061814:intron | 25.0% |
| ! | TTAAGATGTTTATCCAAATG+GGG | - | chr3.3:65064446-65064465 | MS.gene061814:intron | 25.0% |
| ! | TTGCCTTTGTAATATCTATA+TGG | - | chr3.3:65063989-65064008 | MS.gene061814:intron | 25.0% |
| ! | TTGTGAAGATTATTTCCATA+TGG | + | chr3.3:65063763-65063782 | None:intergenic | 25.0% |
| !! | AATTTGTTTATGAGGCTAAT+AGG | - | chr3.3:65062821-65062840 | MS.gene061814:intron | 25.0% |
| !! | CTGAGATCTTTTTATTAAGT+TGG | - | chr3.3:65064492-65064511 | MS.gene061814:intron | 25.0% |
| !! | GTTTAATGACATAATCGTTT+TGG | - | chr3.3:65064035-65064054 | MS.gene061814:intron | 25.0% |
| !!! | GATGTTTGATTTCAGTTTTA+GGG | - | chr3.3:65064171-65064190 | MS.gene061814:intron | 25.0% |
| !!! | TTTTGCAACAACTTTTTAAG+TGG | - | chr3.3:65063050-65063069 | MS.gene061814:intron | 25.0% |
| AACAATGAAAATGTTACCCA+AGG | - | chr3.3:65063781-65063800 | MS.gene061814:intron | 30.0% | |
| AATTTGGTTATCCTCATTGT+TGG | + | chr3.3:65063022-65063041 | None:intergenic | 30.0% | |
| ATATAACAGATTCTCATGGA+TGG | + | chr3.3:65064117-65064136 | None:intergenic | 30.0% | |
| ATGAATAGCAAAAATCTAGC+AGG | - | chr3.3:65063856-65063875 | MS.gene061814:intron | 30.0% | |
| CAACACATGTAAGAAAATTC+GGG | + | chr3.3:65063357-65063376 | None:intergenic | 30.0% | |
| GTGAGCTTATCTACTAATAT+AGG | - | chr3.3:65064213-65064232 | MS.gene061814:intron | 30.0% | |
| TATATCTATTTACCATCCAC+CGG | + | chr3.3:65063108-65063127 | None:intergenic | 30.0% | |
| TCATATTGACCAGTTCAAAT+AGG | - | chr3.3:65062980-65062999 | MS.gene061814:intron | 30.0% | |
| TGCTAAAAAGGAAAAGATAG+AGG | - | chr3.3:65063936-65063955 | MS.gene061814:intron | 30.0% | |
| TGTAAATGCAAATTGACCTT+GGG | + | chr3.3:65063800-65063819 | None:intergenic | 30.0% | |
| TTGCAAAAGTCGTCTAAATT+TGG | + | chr3.3:65063038-65063057 | None:intergenic | 30.0% | |
| TTGTAAATGCAAATTGACCT+TGG | + | chr3.3:65063801-65063820 | None:intergenic | 30.0% | |
| ! | TATGTGTCAATGATGATGAT+GGG | - | chr3.3:65064564-65064583 | MS.gene061814:intron | 30.0% |
| !! | ACATTTATGGTTTGTTTAGG+AGG | - | chr3.3:65063492-65063511 | MS.gene061814:intron | 30.0% |
| !! | ATCATTTTTCAGATACGTGT+CGG | + | chr3.3:65063414-65063433 | None:intergenic | 30.0% |
| !! | ATTAGTCTTGAATGGAAAAC+TGG | - | chr3.3:65063886-65063905 | MS.gene061814:intron | 30.0% |
| !! | CATTTATGGTTTGTTTAGGA+GGG | - | chr3.3:65063493-65063512 | MS.gene061814:intron | 30.0% |
| !! | CGATGTTTGATTTCAGTTTT+AGG | - | chr3.3:65064170-65064189 | MS.gene061814:intron | 30.0% |
| !! | GTTCTTCAATTAGTCTTGAA+TGG | - | chr3.3:65063878-65063897 | MS.gene061814:intron | 30.0% |
| !!! | CGTTTTGGAAAATGGTTTAA+GGG | - | chr3.3:65064050-65064069 | MS.gene061814:intron | 30.0% |
| !!! | GACATAATCGTTTTGGAAAA+TGG | - | chr3.3:65064042-65064061 | MS.gene061814:intron | 30.0% |
| !!! | TCGTTTTGGAAAATGGTTTA+AGG | - | chr3.3:65064049-65064068 | MS.gene061814:intron | 30.0% |
| AAAATGATACACCCAATCAC+AGG | - | chr3.3:65063426-65063445 | MS.gene061814:CDS | 35.0% | |
| AAATTTGACACTCCTGTGAT+TGG | + | chr3.3:65063441-65063460 | None:intergenic | 35.0% | |
| AATTTGACACTCCTGTGATT+GGG | + | chr3.3:65063440-65063459 | None:intergenic | 35.0% | |
| ACAAGTGCTTACGATATAAG+CGG | - | chr3.3:65064419-65064438 | MS.gene061814:intron | 35.0% | |
| ACTCATATGAATTTCAGTCG+TGG | + | chr3.3:65063173-65063192 | None:intergenic | 35.0% | |
| AGACTCATCTACGGTAAAAT+TGG | + | chr3.3:65063268-65063287 | None:intergenic | 35.0% | |
| ATCGGCAACAACATAGTAAT+TGG | + | chr3.3:65062623-65062642 | None:intergenic | 35.0% | |
| CATACCTTAGCAGAAATAGT+AGG | + | chr3.3:65062667-65062686 | None:intergenic | 35.0% | |
| CTAAAACGACAACATGTGTT+TGG | + | chr3.3:65062600-65062619 | None:intergenic | 35.0% | |
| GTTGACGCAGTTTAAATATG+TGG | - | chr3.3:65063072-65063091 | MS.gene061814:intron | 35.0% | |
| TAGCAGAAATAGTAGGAAGT+GGG | + | chr3.3:65062660-65062679 | None:intergenic | 35.0% | |
| TATTAATCTCCCTCAAACCA+AGG | - | chr3.3:65062522-65062541 | MS.gene061814:CDS | 35.0% | |
| TGGTTCAGTATAATGTCTCT+TGG | - | chr3.3:65064717-65064736 | MS.gene061814:CDS | 35.0% | |
| TTAGCAGAAATAGTAGGAAG+TGG | + | chr3.3:65062661-65062680 | None:intergenic | 35.0% | |
| ! | CTATGTGTCAATGATGATGA+TGG | - | chr3.3:65064563-65064582 | MS.gene061814:intron | 35.0% |
| ! | GTTGCTTTCTCAGCAAATTT+AGG | - | chr3.3:65062896-65062915 | MS.gene061814:intron | 35.0% |
| ! | TTTGTTTAGGAGGGAGATTT+TGG | - | chr3.3:65063502-65063521 | MS.gene061814:intron | 35.0% |
| !! | ACTTCCTACTATTTCTGCTA+AGG | - | chr3.3:65062660-65062679 | MS.gene061814:intron | 35.0% |
| !!! | GGAAATTCATGAGTTTTGGA+GGG | + | chr3.3:65063683-65063702 | None:intergenic | 35.0% |
| ACAATTCGTGTTCCTGAACT+TGG | + | chr3.3:65062469-65062488 | None:intergenic | 40.0% | |
| ACACAGCATAGACTCATCTA+CGG | + | chr3.3:65063277-65063296 | None:intergenic | 40.0% | |
| ACTGGGGATACTTAACCAAA+TGG | + | chr3.3:65062548-65062567 | None:intergenic | 40.0% | |
| ATGTGGTTAATTACATCCGG+TGG | - | chr3.3:65063089-65063108 | MS.gene061814:intron | 40.0% | |
| CAATTCGTGTTCCTGAACTT+GGG | + | chr3.3:65062468-65062487 | None:intergenic | 40.0% | |
| CCAAGCTTTCCTATTTGAAC+TGG | + | chr3.3:65062992-65063011 | None:intergenic | 40.0% | |
| CCAGTTCAAATAGGAAAGCT+TGG | - | chr3.3:65062989-65063008 | MS.gene061814:intron | 40.0% | |
| CGTGGTTAATGAAGTAACGT+TGG | + | chr3.3:65063155-65063174 | None:intergenic | 40.0% | |
| CTTGAGCTAAGGAAACTTGA+TGG | - | chr3.3:65064080-65064099 | MS.gene061814:intron | 40.0% | |
| GATACTTAACCAAATGGCCT+TGG | + | chr3.3:65062542-65062561 | None:intergenic | 40.0% | |
| GTTGTTGCCGATAATATCCA+GGG | - | chr3.3:65062631-65062650 | MS.gene061814:intron | 40.0% | |
| GTTTATCCAAATGGGGATCA+TGG | - | chr3.3:65064453-65064472 | MS.gene061814:intron | 40.0% | |
| TGGAATCTCTGCCAAAGATT+GGG | - | chr3.3:65063906-65063925 | MS.gene061814:intron | 40.0% | |
| TGTGTTGTACGTGTATCGTA+CGG | - | chr3.3:65063370-65063389 | MS.gene061814:CDS | 40.0% | |
| TGTTGTTGCCGATAATATCC+AGG | - | chr3.3:65062630-65062649 | MS.gene061814:intron | 40.0% | |
| TTACATCCATGATCCCCATT+TGG | + | chr3.3:65064462-65064481 | None:intergenic | 40.0% | |
| TTGAGGGAGATTAATAAGCG+AGG | + | chr3.3:65062518-65062537 | None:intergenic | 40.0% | |
| TTGGATACAGACCAACAATG+AGG | - | chr3.3:65063008-65063027 | MS.gene061814:intron | 40.0% | |
| TTGGGACTCTGTTGCTAAAA+AGG | - | chr3.3:65063924-65063943 | MS.gene061814:intron | 40.0% | |
| ! | GGAGGGAAATTCATGAGTTT+TGG | + | chr3.3:65063687-65063706 | None:intergenic | 40.0% |
| ! | TGTATCTGAGACGCTACTTT+CGG | - | chr3.3:65064772-65064791 | MS.gene061814:CDS | 40.0% |
| !! | GGGAAATTCATGAGTTTTGG+AGG | + | chr3.3:65063684-65063703 | None:intergenic | 40.0% |
| !! | TGTCAATGATGATGATGGGT+GGG | - | chr3.3:65064568-65064587 | MS.gene061814:intron | 40.0% |
| !!! | TCAGATACGTGTCGGTTTTT+GGG | + | chr3.3:65063406-65063425 | None:intergenic | 40.0% |
| !!! | TTCAGATACGTGTCGGTTTT+TGG | + | chr3.3:65063407-65063426 | None:intergenic | 40.0% |
| !!! | TTCATGAGTTTTGGAGGGAT+AGG | + | chr3.3:65063678-65063697 | None:intergenic | 40.0% |
| AAAGGCTTCAACCCAAGTTC+AGG | - | chr3.3:65062454-65062473 | MS.gene061814:CDS | 45.0% | |
| ACGCACTTAGTTCCTGAACT+GGG | + | chr3.3:65062565-65062584 | None:intergenic | 45.0% | |
| AGCAACAGAGTCCCAATCTT+TGG | + | chr3.3:65063920-65063939 | None:intergenic | 45.0% | |
| CTGGAATCTCTGCCAAAGAT+TGG | - | chr3.3:65063905-65063924 | MS.gene061814:intron | 45.0% | |
| GCAGAGATGAGAGAAGCAAA+TGG | - | chr3.3:65064684-65064703 | MS.gene061814:CDS | 45.0% | |
| GCATTTACAACTACGGAGAG+TGG | - | chr3.3:65063811-65063830 | MS.gene061814:intron | 45.0% | |
| GGTTAATTACATCCGGTGGA+TGG | - | chr3.3:65063093-65063112 | MS.gene061814:intron | 45.0% | |
| GTGTTGTACGTGTATCGTAC+GGG | - | chr3.3:65063371-65063390 | MS.gene061814:CDS | 45.0% | |
| TAAACTAAGGTCCTGCACGA+TGG | - | chr3.3:65063193-65063212 | MS.gene061814:intron | 45.0% | |
| TCCATATGGAGATGTCACCT+GGG | + | chr3.3:65063749-65063768 | None:intergenic | 45.0% | |
| TGGGTGACCCTGGATATTAT+CGG | + | chr3.3:65062641-65062660 | None:intergenic | 45.0% | |
| TGGTTAAGTATCCCCAGTTC+AGG | - | chr3.3:65062550-65062569 | MS.gene061814:CDS | 45.0% | |
| TTCCATATGGAGATGTCACC+TGG | + | chr3.3:65063750-65063769 | None:intergenic | 45.0% | |
| ! | AACCAAATGGCCTTGGTTTG+AGG | + | chr3.3:65062535-65062554 | None:intergenic | 45.0% |
| ! | ACCAAATGGCCTTGGTTTGA+GGG | + | chr3.3:65062534-65062553 | None:intergenic | 45.0% |
| ! | GTAGCTATGTGGCATGCTTT+TGG | - | chr3.3:65063833-65063852 | MS.gene061814:intron | 45.0% |
| !! | AGGGTGTTGAACTTGAGCTA+AGG | - | chr3.3:65064069-65064088 | MS.gene061814:intron | 45.0% |
| !! | GTGTCAATGATGATGATGGG+TGG | - | chr3.3:65064567-65064586 | MS.gene061814:intron | 45.0% |
| !! | TTAGGAGGGAGATTTTGGAG+AGG | - | chr3.3:65063507-65063526 | MS.gene061814:intron | 45.0% |
| AAGCAAATGGCAGAGTTGCG+TGG | - | chr3.3:65064697-65064716 | MS.gene061814:CDS | 50.0% | |
| AGATGTCACCTGGGGCAAAA+AGG | + | chr3.3:65063740-65063759 | None:intergenic | 50.0% | |
| CACGCACTTAGTTCCTGAAC+TGG | + | chr3.3:65062566-65062585 | None:intergenic | 50.0% | |
| CCATATGGAGATGTCACCTG+GGG | + | chr3.3:65063748-65063767 | None:intergenic | 50.0% | |
| CGCACTTAGTTCCTGAACTG+GGG | + | chr3.3:65062564-65062583 | None:intergenic | 50.0% | |
| GCAGTCATGTATCACACCGA+GGG | + | chr3.3:65063718-65063737 | None:intergenic | 50.0% | |
| GTCTCTTGGCGTATGCGTTT+CGG | - | chr3.3:65064731-65064750 | MS.gene061814:CDS | 50.0% | |
| TACGGAGAGTGGTAGCTATG+TGG | - | chr3.3:65063822-65063841 | MS.gene061814:intron | 50.0% | |
| TACGTGTATCGTACGGGTGT+CGG | - | chr3.3:65063377-65063396 | MS.gene061814:CDS | 50.0% | |
| TCCCTCAAACCAAGGCCATT+TGG | - | chr3.3:65062530-65062549 | MS.gene061814:CDS | 50.0% | |
| ! | ATCACACCGAGGGTTTGCTT+GGG | + | chr3.3:65063708-65063727 | None:intergenic | 50.0% |
| ! | TATCACACCGAGGGTTTGCT+TGG | + | chr3.3:65063709-65063728 | None:intergenic | 50.0% |
| AGGAACTAAGTGCGTGTCGC+AGG | - | chr3.3:65062570-65062589 | MS.gene061814:intron | 55.0% | |
| CCCCAGGTGACATCTCCATA+TGG | - | chr3.3:65063745-65063764 | MS.gene061814:intron | 55.0% | |
| GGCAGTCATGTATCACACCG+AGG | + | chr3.3:65063719-65063738 | None:intergenic | 55.0% | |
| TAGTAGGAAGTGGGTGACCC+TGG | + | chr3.3:65062651-65062670 | None:intergenic | 55.0% | |
| TTCCCTCCCAAGCAAACCCT+CGG | - | chr3.3:65063699-65063718 | MS.gene061814:intron | 55.0% | |
| ! | CATGACTGCCTTTTTGCCCC+AGG | - | chr3.3:65063729-65063748 | MS.gene061814:intron | 55.0% |
| ! | GTGTTGATGTGCCATCGTGC+AGG | + | chr3.3:65063207-65063226 | None:intergenic | 55.0% |
| !! | GGAGGGAGATTTTGGAGAGG+AGG | - | chr3.3:65063510-65063529 | MS.gene061814:intron | 55.0% |
| ! | ACACCGAGGGTTTGCTTGGG+AGG | + | chr3.3:65063705-65063724 | None:intergenic | 60.0% |
| ! | CACCGAGGGTTTGCTTGGGA+GGG | + | chr3.3:65063704-65063723 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65062448 | 65064812 | 65062448 | ID=MS.gene061814 |
| chr3.3 | mRNA | 65062448 | 65064812 | 65062448 | ID=MS.gene061814.t1;Parent=MS.gene061814 |
| chr3.3 | exon | 65064579 | 65064812 | 65064579 | ID=MS.gene061814.t1.exon1;Parent=MS.gene061814.t1 |
| chr3.3 | CDS | 65064579 | 65064812 | 65064579 | ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1 |
| chr3.3 | exon | 65063303 | 65063509 | 65063303 | ID=MS.gene061814.t1.exon2;Parent=MS.gene061814.t1 |
| chr3.3 | CDS | 65063303 | 65063509 | 65063303 | ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1 |
| chr3.3 | exon | 65063113 | 65063189 | 65063113 | ID=MS.gene061814.t1.exon3;Parent=MS.gene061814.t1 |
| chr3.3 | CDS | 65063113 | 65063189 | 65063113 | ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1 |
| chr3.3 | exon | 65062448 | 65062580 | 65062448 | ID=MS.gene061814.t1.exon4;Parent=MS.gene061814.t1 |
| chr3.3 | CDS | 65062448 | 65062580 | 65062448 | ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1 |
| Gene Sequence |
| Protein sequence |
