AlfalfaGEDB | MS.gene061814

M. sativa cultivar XinJiangDaYe / MS.gene061814

KEGG: K20352
GO: -
PFAM: PF01105.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061814.t1	XP_003601065.1	95.5	220	3	2	1	216	1	217	3.20E-109	404.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061814.t1	Q6IDL4	62.3	204	69	3	19	216	16	217	1.2e-67	257.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061814.t1	B7FMU8	95.5	220	3	2	1	216	1	217	2.3e-109	404.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050961	MS.gene061814	0.806953	6.40E-50	-1.69E-46
MS.gene051121	MS.gene061814	0.803662	3.13E-49	-1.69E-46
MS.gene052533	MS.gene061814	0.802753	4.83E-49	-1.69E-46
MS.gene05454	MS.gene061814	0.800403	1.47E-48	-1.69E-46
MS.gene054892	MS.gene061814	0.831601	1.52E-55	-1.69E-46
MS.gene054893	MS.gene061814	0.81936	1.21E-52	-1.69E-46
MS.gene05686	MS.gene061814	0.813079	3.07E-51	-1.69E-46
MS.gene059774	MS.gene061814	0.851589	8.04E-61	-1.69E-46
MS.gene060697	MS.gene061814	0.848013	8.03E-60	-1.69E-46
MS.gene061188	MS.gene061814	0.833559	4.98E-56	-1.69E-46

Showing 1 to 10 of 10 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061814.t1	MTR_3g072600	95.455	220	3	2	1	216	1	217	7.09e-154	425
MS.gene061814.t1	MTR_5g058140	75.789	190	37	3	32	216	27	212	9.55e-100	288
MS.gene061814.t1	MTR_8g088940	65.566	212	63	5	12	216	3	211	1.04e-89	263
MS.gene061814.t1	MTR_2g007210	61.244	209	69	4	13	216	5	206	1.85e-87	257
MS.gene061814.t1	MTR_8g088980	71.528	144	35	2	79	216	19	162	1.63e-72	217
MS.gene061814.t1	MTR_4g082315	44.330	194	99	4	31	216	24	216	3.26e-55	175
MS.gene061814.t1	MTR_6g012770	43.716	183	93	4	43	216	31	212	2.86e-51	165
MS.gene061814.t1	MTR_7g011490	36.058	208	124	4	17	216	6	212	1.61e-44	148
MS.gene061814.t1	MTR_5g042260	33.632	223	132	6	4	216	3	219	3.22e-40	137
MS.gene061814.t1	MTR_5g042320	37.705	183	102	6	44	216	43	223	1.82e-30	112

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061814.t1	AT1G09580	61.951	205	70	3	18	216	15	217	7.51e-93	271
MS.gene061814.t1	AT1G57620	56.306	222	81	5	1	216	1	212	6.01e-87	256
MS.gene061814.t1	AT1G21900	61.538	208	72	4	16	216	10	216	1.27e-85	253
MS.gene061814.t1	AT3G10780	52.525	198	84	4	28	216	21	217	1.93e-63	196
MS.gene061814.t1	AT1G26690	39.904	208	112	5	17	216	12	214	3.43e-51	165
MS.gene061814.t1	AT1G14010	38.756	209	117	5	16	216	7	212	1.00e-48	159
MS.gene061814.t1	AT1G69460	41.117	197	105	5	29	216	20	214	1.70e-48	158
MS.gene061814.t1	AT2G03290	40.816	196	108	3	29	216	18	213	1.78e-48	158
MS.gene061814.t1	AT3G29070	38.342	193	110	4	32	216	34	225	6.82e-42	142
MS.gene061814.t1	AT2G03040	38.926	149	87	2	29	173	18	166	5.73e-34	119

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 51 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTTCAACCCAAGTTC+AGG	0.405800	3.3:-65064784	MS.gene061814:CDS
AACAATGAAAATGTTACCCA+AGG	0.597853	3.3:-65063457	MS.gene061814:CDS
AACCAAATGGCCTTGGTTTG+AGG	0.382119	3.3:+65064706	None:intergenic
AAGCAAATGGCAGAGTTGCG+TGG	0.651089	3.3:-65062541	MS.gene061814:CDS
ACAATTCGTGTTCCTGAACT+TGG	0.360761	3.3:+65064772	None:intergenic
ACCAAATGGCCTTGGTTTGA+GGG	0.400461	3.3:+65064707	None:intergenic
ACGCACTTAGTTCCTGAACT+GGG	0.540090	3.3:+65064676	None:intergenic
ACTGGGGATACTTAACCAAA+TGG	0.541125	3.3:+65064693	None:intergenic
ACTTCCTACTATTTCTGCTA+AGG	0.538663	3.3:-65064578	MS.gene061814:intron
AGCAACAGAGTCCCAATCTT+TGG	0.327971	3.3:+65063321	None:intergenic

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAATGAAAATGTTACCCA+AGG	-	chr3.3:65063781-65063800	MS.gene061814:intron	30.0%
AATTTGGTTATCCTCATTGT+TGG	+	chr3.3:65063022-65063041	None:intergenic	30.0%
ATATAACAGATTCTCATGGA+TGG	+	chr3.3:65064117-65064136	None:intergenic	30.0%
ATGAATAGCAAAAATCTAGC+AGG	-	chr3.3:65063856-65063875	MS.gene061814:intron	30.0%
CAACACATGTAAGAAAATTC+GGG	+	chr3.3:65063357-65063376	None:intergenic	30.0%
GTGAGCTTATCTACTAATAT+AGG	-	chr3.3:65064213-65064232	MS.gene061814:intron	30.0%
TATATCTATTTACCATCCAC+CGG	+	chr3.3:65063108-65063127	None:intergenic	30.0%
TCATATTGACCAGTTCAAAT+AGG	-	chr3.3:65062980-65062999	MS.gene061814:intron	30.0%
TGCTAAAAAGGAAAAGATAG+AGG	-	chr3.3:65063936-65063955	MS.gene061814:intron	30.0%
TGTAAATGCAAATTGACCTT+GGG	+	chr3.3:65063800-65063819	None:intergenic	30.0%

Showing 1 to 10 of 150 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	65062448	65064812	65062448	ID=MS.gene061814
chr3.3	mRNA	65062448	65064812	65062448	ID=MS.gene061814.t1;Parent=MS.gene061814
chr3.3	exon	65064579	65064812	65064579	ID=MS.gene061814.t1.exon1;Parent=MS.gene061814.t1
chr3.3	CDS	65064579	65064812	65064579	ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1
chr3.3	exon	65063303	65063509	65063303	ID=MS.gene061814.t1.exon2;Parent=MS.gene061814.t1
chr3.3	CDS	65063303	65063509	65063303	ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1
chr3.3	exon	65063113	65063189	65063113	ID=MS.gene061814.t1.exon3;Parent=MS.gene061814.t1
chr3.3	CDS	65063113	65063189	65063113	ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1
chr3.3	exon	65062448	65062580	65062448	ID=MS.gene061814.t1.exon4;Parent=MS.gene061814.t1
chr3.3	CDS	65062448	65062580	65062448	ID=cds.MS.gene061814.t1;Parent=MS.gene061814.t1

Gene Sequence

>MS.gene061814

ATGGCAAAAGGCTTCAACCCAAGTTCAGGAACACGAATTGTTCTTAGTATTTTATTGTTATGCTTCACCTCGCTTATTAATCTCCCTCAAACCAAGGCCATTTGGTTAAGTATCCCCAGTTCAGGAACTAAGTGCGTGTCGCAGGATATCCAAACACATGTTGTCGTTTTAGCCAATTACTATGTTGTTGCCGATAATATCCAGGGTCACCCACTTCCTACTATTTCTGCTAAGGTATGCTTTATTATTTTTTCTTGGTTTTGTTTATTTAATAGTATGAAAATTCATATTCATGTTTGATCTTTATGCTTTATTTGGTCAAAGCATGCACTTAGTTTTGTTTAATTTAAAGTTTCTTCAACTTAGGATTATAAATTTGTTTATGAGGCTAATAGGGATAACACTAGTACCAAATTTGTATTGACGTTGAATTTTCTGACTTTAATTTGTTGCTTTCTCAGCAAATTTAGGACCAAATTTCATCCTTGTTCTTTAAACTTAATGGTGTAAAATAAGGATAGAGACTGAAAATTCATATTGACCAGTTCAAATAGGAAAGCTTGGATACAGACCAACAATGAGGATAACCAAATTTAGACGACTTTTGCAACAACTTTTTAAGTGGTTGACGCAGTTTAAATATGTGGTTAATTACATCCGGTGGATGGTAAATAGATATATTAGGTGTTGAAACTCATTAACTACCAACGTTACTTCATTAACCACGACTGAAATTCATATGAGTTAAACTAAGGTCCTGCACGATGGCACATCAACACCACTAATGTAGTAGTTTTTTTTTTTTTTTTTTAAGTGTCCAATTTTACCGTAGATGAGTCTATGCTGTGTTTGAAGAGTGTCTAATGTGTGTCAAAAGCAAAGAAAAAAGTGTTTTTGTGACACTTGCCCGAATTTTCTTACATGTGTTGTACGTGTATCGTACGGGTGTCGGAAACCCAAAAACCGACACGTATCTGAAAAATGATACACCCAATCACAGGAGTGTCAAATTTGTCTATAATTGAAAACACTAACTCAACTAATACATTTATGGTTTGTTTAGGAGGGAGATTTTGGAGAGGAGGACTGTTTTTTCTTTTCTATTTTTAAACAAGCTATAAGATATTTTTAAAAATGAACGAAGTGTGATTGAATTGTTATATGATCATATATCACGATAGTTTTTTAAATTTTTTTAAATCTCAAATATATATATTAAAATATAGACCTATCCCTCCAAAACTCATGAATTTCCCTCCCAAGCAAACCCTCGGTGTGATACATGACTGCCTTTTTGCCCCAGGTGACATCTCCATATGGAAATAATCTTCACAACAATGAAAATGTTACCCAAGGTCAATTTGCATTTACAACTACGGAGAGTGGTAGCTATGTGGCATGCTTTTGGATGAATAGCAAAAATCTAGCAGGTTCTTCAATTAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGGGACTCTGTTGCTAAAAAGGAAAAGATAGAGGTAATAAATAAATTTCATTCATTCTCTATCTTTGCCTTTGTAATATCTATATGGGATTTGTTTATTTATATAGAAGTGTTTAATGACATAATCGTTTTGGAAAATGGTTTAAGGGTGTTGAACTTGAGCTAAGGAAACTTGATGGAGCTGTGCAAGCCATCCATGAGAATCTGTTATATTTAAAGAACAGGTAAAATCTCTTATACTCATTGCGATGTTTGATTTCAGTTTTAGGGTCTGTTTAGATTAATTTATGTGAGCTTATCTACTAATATAGGCACTTATGAGACTGTTTGAGAGAGCTTTTGAAAATAACTCATGATATCTCCATAAAATTGTTTTGAACTTTTTTATAAGCCATCTAATATAGTTTATGAAAATAGCTTATAGCTAATAGGAAAATAGATTGACCTTATTTCATCTTTTGTTATAGAGATAACTTATACATTAACACTTATAAGACAAGTGCTTACGATATAAGCGGTTAATTAAGATGTTTATCCAAATGGGGATCATGGATGTAATATTTCTTTTCTGAGATCTTTTTATTAAGTTGGGATCTTCAAATTTATTCAAAGAAAGTTGGGGTTCTTCAAATCTCTTAGCTATGTGTCAATGATGATGATGGGTGGGATGAAAAACATAATAAACACAAAATAACTGAGATAATTCATTATGCTTGATTAGTGCATTTCAAAACATTTTTTTTGCACATTGTATAGGGAAGCAGAGATGAGAGAAGCAAATGGCAGAGTTGCGTGGTTCAGTATAATGTCTCTTGGCGTATGCGTTTCGGTTTCAGTGTTGCAGCTGTTGTATCTGAGACGCTACTTTCGGAAGAAGAAGCTCATATAG

Protein sequence

>MS.gene061814.t1

MAKGFNPSSGTRIVLSILLLCFTSLINLPQTKAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTISAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWMNSKNLAGSSISLEWKTGISAKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREAEMREANGRVAWFSIMSLGVCVSVSVLQLLYLRRYFRKKKLI