AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05454


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05454.t1 MTR_6g084400 98.551 828 12 0 1 828 1 828 0.0 1684
MS.gene05454.t1 MTR_8g104330 72.661 823 210 7 1 816 1 815 0.0 1211
MS.gene05454.t1 MTR_8g104330 76.159 755 167 6 67 816 16 762 0.0 1165
MS.gene05454.t1 MTR_8g104330 71.335 764 204 7 1 757 1 756 0.0 1110
MS.gene05454.t1 MTR_4g115660 23.971 559 337 27 72 595 51 556 3.62e-15 79.7
MS.gene05454.t1 MTR_2g072180 32.759 116 73 2 613 724 195 309 3.45e-14 77.0
MS.gene05454.t1 MTR_2g072180 32.759 116 73 2 613 724 285 399 4.01e-14 77.0
MS.gene05454.t1 MTR_2g072180 29.817 218 129 10 69 273 51 257 2.94e-11 67.8
MS.gene05454.t1 MTR_1g025550 20.463 518 338 23 97 595 69 531 2.28e-13 73.9
MS.gene05454.t1 MTR_3g106660 22.348 528 337 25 101 594 66 554 9.49e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05454.t1 AT3G18370 58.116 807 331 4 15 821 14 813 0.0 895
MS.gene05454.t1 AT1G05500 23.372 522 329 24 101 595 73 550 1.30e-15 81.3
MS.gene05454.t1 AT3G14590 33.636 110 68 2 619 724 201 309 9.22e-15 79.0
MS.gene05454.t1 AT3G14590 33.636 110 68 2 619 724 258 366 9.30e-15 79.0
MS.gene05454.t1 AT3G14590 33.636 110 68 2 619 724 244 352 9.46e-15 79.0
MS.gene05454.t1 AT3G14590 33.636 110 68 2 619 724 203 311 1.00e-14 79.0
MS.gene05454.t1 AT3G14590 33.636 110 68 2 619 724 289 397 1.10e-14 79.0
MS.gene05454.t1 AT1G53590 34.545 110 67 2 619 724 288 396 1.59e-13 75.1

Find 202 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCCTCTTCTGCATTTC+TGG 0.020626 6.4:-58252812 None:intergenic
TCCTCTTGCACTTGCTGTTT+GGG 0.181803 6.4:+58247574 MS.gene05454:CDS
CTCATACTCCAAATCCTATT+TGG 0.188889 6.4:+58251585 MS.gene05454:CDS
ACCTCTTCAAGGTGTGAAAA+AGG 0.226333 6.4:+58252757 MS.gene05454:CDS
ATCTCACCTGGCTAGGAATT+TGG 0.243430 6.4:-58252868 None:intergenic
TTCCTCTTGCACTTGCTGTT+TGG 0.250842 6.4:+58247573 MS.gene05454:CDS
TTTCAGCCAATAAACTTTCT+AGG 0.254512 6.4:+58250418 MS.gene05454:CDS
TGGTAGTGCCCAAGTAAATT+TGG 0.259804 6.4:+58251697 MS.gene05454:CDS
AACACACCGTTGATCCTTCT+TGG 0.266918 6.4:-58251820 None:intergenic
AGTGGCCCGGTGTTTCTTCT+TGG 0.278181 6.4:+58249930 MS.gene05454:CDS
TTACAAGAAATCTTGGTTTC+CGG 0.287505 6.4:-58249190 None:intergenic
TCTAGGAAGTTGTGAAATTA+AGG 0.289570 6.4:+58250689 MS.gene05454:CDS
ATGGGATGCACCGTTTAATA+TGG 0.293962 6.4:+58250593 MS.gene05454:CDS
CCATATTGCAATTTAATGTA+TGG 0.314578 6.4:-58251458 None:intergenic
GTCTGATTCCAAATAGGATT+TGG 0.315307 6.4:-58251593 None:intergenic
GGAACTCCTAGAAAGTTTAT+TGG 0.317094 6.4:-58250424 None:intergenic
TTGCCTCCTGGATGCTTTGA+AGG 0.319975 6.4:-58250445 None:intergenic
CCAGTCCTTCCAAATTTACT+TGG 0.320537 6.4:-58251706 None:intergenic
TTCAGAATGTCTTCTGCTTA+AGG 0.324131 6.4:-58253652 None:intergenic
TCAATCGTCTGATTCCAAAT+AGG 0.331221 6.4:-58251599 None:intergenic
TGATCCACTTTGTTGCCTCC+TGG 0.342801 6.4:-58250457 None:intergenic
TTCGATAATGACCAGGGTTC+AGG 0.342828 6.4:+58252267 MS.gene05454:intron
CACTTATCAGCCATCTGGTT+TGG 0.344118 6.4:-58252731 None:intergenic
TGGGCAATAGGACCAGATTC+CGG 0.349699 6.4:+58251077 MS.gene05454:CDS
GCACAAGCAATCAAAATAAC+TGG 0.349949 6.4:-58247515 None:intergenic
CCATACATTAAATTGCAATA+TGG 0.350240 6.4:+58251458 MS.gene05454:CDS
TGCTGTTTGGGCTACTATAC+AGG 0.355018 6.4:+58247586 MS.gene05454:CDS
GGGCAATAGGACCAGATTCC+GGG 0.357507 6.4:+58251078 MS.gene05454:CDS
CCAGAGTTGGCACCCTCAAA+TGG 0.360206 6.4:-58251152 None:intergenic
GCACAAGTGATCCATATGTT+AGG 0.369223 6.4:+58252358 MS.gene05454:CDS
GCTTCTTCTCAGCAAGATAA+AGG 0.369968 6.4:+58253590 MS.gene05454:CDS
GTGACTGCTGAGAGTTGTTT+CGG 0.370904 6.4:-58251328 None:intergenic
GCCCGGTGTTTCTTCTTGGC+TGG 0.374401 6.4:+58249934 MS.gene05454:CDS
ATTAAACGGTGCATCCCATC+TGG 0.374963 6.4:-58250589 None:intergenic
AACTCTCAGCAGTCACTTAA+CGG 0.382207 6.4:+58251335 MS.gene05454:CDS
ATAGAACTTGTTCTGATTGA+AGG 0.383494 6.4:+58252306 MS.gene05454:CDS
TAGTCACACTTCACATTGTT+GGG 0.384351 6.4:-58250666 None:intergenic
ATCAAAGGACTTCCATCATC+AGG 0.388943 6.4:-58252629 None:intergenic
AAGCTTGGGGTTAAAATAGT+TGG 0.389425 6.4:-58248854 None:intergenic
CTAGGGTCTGGTTCCATTGA+GGG 0.391061 6.4:-58252601 None:intergenic
AATGCAGAAGAGGCAAAGTA+TGG 0.391593 6.4:+58252817 MS.gene05454:CDS
CCATTTGAGGGTGCCAACTC+TGG 0.399069 6.4:+58251152 MS.gene05454:CDS
ATAAACTGTTGACAGAAATC+TGG 0.405065 6.4:+58248830 MS.gene05454:CDS
AACAGATGATGATCAAGTTT+AGG 0.410466 6.4:+58253457 MS.gene05454:CDS
GAAGCAAAATGCTCATTTCA+TGG 0.412459 6.4:-58249637 None:intergenic
TCAACAATAATGTGGGCAAT+AGG 0.413814 6.4:+58251065 MS.gene05454:CDS
CCTCCTAGCTTGGCCTTACA+AGG 0.414305 6.4:+58249370 MS.gene05454:CDS
AATGACCAGGGTTCAGGCTC+AGG 0.421962 6.4:+58252273 MS.gene05454:intron
TCAAATATTCAGTTAAGAAC+CGG 0.423889 6.4:+58251362 MS.gene05454:CDS
GATAACCTTGATGAAAGCTT+GGG 0.426526 6.4:-58248868 None:intergenic
CCATAGTGTACCCTAACATA+TGG 0.427638 6.4:-58252369 None:intergenic
AATTTGGAAGGACTGGTTGA+TGG 0.427955 6.4:+58251713 MS.gene05454:CDS
TTTGCTATAACCCCGGAATC+TGG 0.428084 6.4:-58251089 None:intergenic
TAGAGGACTTGGATAAGAAA+TGG 0.430980 6.4:+58248670 MS.gene05454:CDS
ATTCGTGCAGTTCCCATCAA+TGG 0.433397 6.4:-58249677 None:intergenic
CCATATGTTAGGGTACACTA+TGG 0.435681 6.4:+58252369 MS.gene05454:CDS
TATTAATAGTCTTCATATCA+AGG 0.435927 6.4:+58249703 MS.gene05454:CDS
TGGATCATGCCCTCCTAGCT+TGG 0.436797 6.4:+58249360 MS.gene05454:CDS
ATGTAGGTAGTAACGCATTA+TGG 0.437857 6.4:-58252667 None:intergenic
CTTAAAATAACTGTTGTAGA+AGG 0.438546 6.4:+58251392 MS.gene05454:CDS
ACACCGGGCCACTCGGTAGC+TGG 0.439847 6.4:-58249920 None:intergenic
AGCTTGGGGTTAAAATAGTT+GGG 0.439988 6.4:-58248853 None:intergenic
CTCAGCAAGATAAAGGAACT+TGG 0.444109 6.4:+58253597 MS.gene05454:CDS
ATCGAAGATGGAAATCTTGA+AGG 0.445397 6.4:+58253486 MS.gene05454:CDS
CAGGGTTCAGGCTCAGGAAA+TGG 0.446550 6.4:+58252279 MS.gene05454:intron
ATAGTCACACTTCACATTGT+TGG 0.448368 6.4:-58250667 None:intergenic
TGGATCAACCAATGGTTCTT+CGG 0.448799 6.4:+58250473 MS.gene05454:CDS
GTGAGAGTTGGAGTTGCCTT+TGG 0.449806 6.4:+58249875 MS.gene05454:CDS
TGGTGTAATTTACTCAAAGA+AGG 0.451877 6.4:-58252848 None:intergenic
AGTGCTCTTCCATCTAAAAT+CGG 0.452353 6.4:-58249824 None:intergenic
ATGGATCAGTCAGGGATGTA+TGG 0.453137 6.4:+58251732 MS.gene05454:CDS
GAGGAGAACCGATGTCAGAC+TGG 0.453869 6.4:+58250557 MS.gene05454:CDS
ATGGTCAACTATCGGCGATC+AGG 0.455061 6.4:+58249399 MS.gene05454:CDS
TCATGCAAAACCATATTAAA+CGG 0.459628 6.4:-58250603 None:intergenic
TTGTGGAGATGAAATTGAAA+TGG 0.461121 6.4:+58251124 MS.gene05454:CDS
GAGAAGAATTAATGATCTCT+TGG 0.464473 6.4:-58253620 None:intergenic
TCTAGGCACGTTTGAAGCTC+CGG 0.465326 6.4:+58249171 MS.gene05454:intron
TAAGCTTGCGAAGCCATTGA+TGG 0.465366 6.4:+58249664 MS.gene05454:CDS
TTCCATCATCAGGGAACTCT+AGG 0.466047 6.4:-58252619 None:intergenic
TGATAACCTTGATGAAAGCT+TGG 0.466050 6.4:-58248869 None:intergenic
GTATCCACTTATCAGCCATC+TGG 0.470024 6.4:-58252736 None:intergenic
TCCTTTGATGCTTTATGTGA+AGG 0.479609 6.4:+58252643 MS.gene05454:CDS
ACGATTGAATTTGACGAGGT+TGG 0.481117 6.4:+58251614 MS.gene05454:CDS
TGACCATCTCATCCCTTGTA+AGG 0.481520 6.4:-58249383 None:intergenic
ACCCTAGAGTTCCCTGATGA+TGG 0.482730 6.4:+58252617 MS.gene05454:CDS
TTATCAGCCATCTGGTTTGG+AGG 0.483822 6.4:-58252728 None:intergenic
ATTGAATTTGACGAGGTTGG+TGG 0.484127 6.4:+58251617 MS.gene05454:CDS
CCAAGTAAATTTGGAAGGAC+TGG 0.484300 6.4:+58251706 MS.gene05454:CDS
ATTTGTAGAGGTAGAAATTG+AGG 0.485231 6.4:+58250527 MS.gene05454:CDS
CACCATTGGAGCACTGTGAA+TGG 0.486631 6.4:+58248803 MS.gene05454:CDS
GTTGGAGTTGCCTTTGGAAG+CGG 0.486786 6.4:+58249881 MS.gene05454:CDS
ACAAAACTCTAACCCCTCAA+TGG 0.492964 6.4:+58252588 MS.gene05454:CDS
CATCAGGGAACTCTAGGGTC+TGG 0.493217 6.4:-58252613 None:intergenic
GACTGGTTGATGGATCAGTC+AGG 0.494486 6.4:+58251723 MS.gene05454:CDS
TCTAGGGTCTGGTTCCATTG+AGG 0.494707 6.4:-58252602 None:intergenic
TGCTTGCTTTGCTATAACCC+CGG 0.495826 6.4:-58251096 None:intergenic
CAAACTACTTGTAGAGGACT+TGG 0.496318 6.4:+58248659 MS.gene05454:CDS
GCCCAAACAGCAAGTGCAAG+AGG 0.503028 6.4:-58247575 None:intergenic
TTCAATTGATAGTATTGAAG+AGG 0.504507 6.4:+58247433 MS.gene05454:CDS
TTTAGGTCTCAAATCGAAGA+TGG 0.504600 6.4:+58253474 MS.gene05454:CDS
CATATAGCCCATCACACCAT+TGG 0.505510 6.4:+58248789 MS.gene05454:intron
CTTCCAGCTACCGAGTGGCC+CGG 0.508428 6.4:+58249917 MS.gene05454:CDS
ACTTGTTCTGATTGAAGGGA+GGG 0.509206 6.4:+58252311 MS.gene05454:CDS
TAAAATAGAAGCCATAAAAG+TGG 0.509234 6.4:+58251793 MS.gene05454:CDS
AAGGAAAATCTCACCTGGCT+AGG 0.510015 6.4:-58252875 None:intergenic
CACAAGTGATCCATATGTTA+GGG 0.511301 6.4:+58252359 MS.gene05454:CDS
TTACTACCTACATCAAGTAT+AGG 0.513003 6.4:+58252677 MS.gene05454:CDS
AACGTCTTCCGAAGAACCAT+TGG 0.515459 6.4:-58250481 None:intergenic
CAGAGTTGGCACCCTCAAAT+GGG 0.516145 6.4:-58251151 None:intergenic
CAAACCAGATGGCTGATAAG+TGG 0.520171 6.4:+58252732 MS.gene05454:CDS
GAATTTGACGAGGTTGGTGG+CGG 0.522985 6.4:+58251620 MS.gene05454:CDS
ATTACACCAAATTCCTAGCC+AGG 0.524902 6.4:+58252862 MS.gene05454:CDS
GAAATGGTTGTCCCATTTGA+GGG 0.525655 6.4:+58251140 MS.gene05454:CDS
AATAACTGTTGTAGAAGGAA+AGG 0.529513 6.4:+58251397 MS.gene05454:CDS
GGAGTTGCCTTTGGAAGCGG+TGG 0.531014 6.4:+58249884 MS.gene05454:CDS
AAGTTCCAGAAATGCAGAAG+AGG 0.531109 6.4:+58252807 MS.gene05454:CDS
GATAAGTGGATACCTCTTCA+AGG 0.532440 6.4:+58252746 MS.gene05454:CDS
TTCATCTCCGAAAAGTTCCT+CGG 0.534068 6.4:-58251669 None:intergenic
CCTCTACAAGTAGTTTGCGT+TGG 0.534467 6.4:-58248653 None:intergenic
TGAAATGGTTGTCCCATTTG+AGG 0.535808 6.4:+58251139 MS.gene05454:CDS
TAGAACTTGTTCTGATTGAA+GGG 0.536589 6.4:+58252307 MS.gene05454:CDS
CCTCTCGAAAGAGTGCGTTC+CGG 0.537536 6.4:+58251758 MS.gene05454:CDS
CAGTGCTCCAATGGTGTGAT+GGG 0.541796 6.4:-58248796 None:intergenic
CACCAGCCAAGAAGAAACAC+CGG 0.542319 6.4:-58249936 None:intergenic
ACAGTGCTCCAATGGTGTGA+TGG 0.543090 6.4:-58248797 None:intergenic
CTTGTAAGGCCAAGCTAGGA+GGG 0.545845 6.4:-58249369 None:intergenic
AGCCATTCACAGTGCTCCAA+TGG 0.546401 6.4:-58248805 None:intergenic
ATCACTTGTGCCTCTGAGAT+CGG 0.550679 6.4:-58252346 None:intergenic
TTACAGCGAGTTATGCAACT+TGG 0.552195 6.4:+58249599 MS.gene05454:intron
TAGGGTCTGGTTCCATTGAG+GGG 0.552252 6.4:-58252600 None:intergenic
ACCAGCCAAGAAGAAACACC+GGG 0.560295 6.4:-58249935 None:intergenic
ATTAATAGTCTTCATATCAA+GGG 0.560450 6.4:+58249704 MS.gene05454:CDS
CTACCTCTACAAATGTATGT+AGG 0.562256 6.4:-58250518 None:intergenic
AAGCAAAATGCTCATTTCAT+GGG 0.563579 6.4:-58249636 None:intergenic
CAGTCCTTCCAAATTTACTT+GGG 0.564700 6.4:-58251705 None:intergenic
TCAGCTCCTGAGGTGAGAGT+TGG 0.566088 6.4:+58249863 MS.gene05454:CDS
TAGAGTTTCTAGCTCACTCA+AGG 0.566537 6.4:-58253520 None:intergenic
AAGATGACTCAACAATAATG+TGG 0.566923 6.4:+58251057 MS.gene05454:CDS
TTAACCCCAAGCTTTCATCA+AGG 0.567320 6.4:+58248863 MS.gene05454:CDS
GCAACTCCAACTCTCACCTC+AGG 0.567514 6.4:-58249869 None:intergenic
ATATAGTACCTCTCCAGAGT+TGG 0.567676 6.4:-58251165 None:intergenic
CATTAAATTGCAATATGGAA+AGG 0.567822 6.4:+58251463 MS.gene05454:CDS
AGAAGAAACACCGGGCCACT+CGG 0.570094 6.4:-58249927 None:intergenic
CCTTGTAAGGCCAAGCTAGG+AGG 0.570679 6.4:-58249370 None:intergenic
GTTCAGGCTCAGGAAATGGT+TGG 0.572394 6.4:+58252283 MS.gene05454:CDS
GAATGTCTTCTGCTTAAGGA+AGG 0.575240 6.4:-58253648 None:intergenic
TCGTCGTCGCGGCTCCACCA+TGG 0.575472 6.4:-58250328 None:intergenic
AAGCTTGCGAAGCCATTGAT+GGG 0.576225 6.4:+58249665 MS.gene05454:CDS
TCCTTCACATAAAGCATCAA+AGG 0.577767 6.4:-58252644 None:intergenic
TGGCCTTACAAGGGATGAGA+TGG 0.577839 6.4:+58249380 MS.gene05454:CDS
GGAGTTCCTTCAAAGCATCC+AGG 0.578334 6.4:+58250439 MS.gene05454:CDS
CATTCACCTATACTTGATGT+AGG 0.582110 6.4:-58252683 None:intergenic
ACTGGGTTCAACTCCCAGAT+GGG 0.583518 6.4:+58250575 MS.gene05454:CDS
CTCCTAGCTTGGCCTTACAA+GGG 0.587231 6.4:+58249371 MS.gene05454:CDS
CTGACTCCCACCGCTTCCAA+AGG 0.592548 6.4:-58249891 None:intergenic
TTCGTTTGTATCAGCTCCTG+AGG 0.594024 6.4:+58249853 MS.gene05454:CDS
GACTGGGTTCAACTCCCAGA+TGG 0.594097 6.4:+58250574 MS.gene05454:CDS
AACTTGTTCTGATTGAAGGG+AGG 0.594772 6.4:+58252310 MS.gene05454:CDS
AATGTGAAGTGTGACTATCT+AGG 0.596257 6.4:+58250672 MS.gene05454:CDS
GGGATGAGATGGTCAACTAT+CGG 0.600420 6.4:+58249391 MS.gene05454:CDS
ATCCCTTGTAAGGCCAAGCT+AGG 0.602403 6.4:-58249373 None:intergenic
GAGTTGCCTTTGGAAGCGGT+GGG 0.609469 6.4:+58249885 MS.gene05454:CDS
AGGAGAACCGATGTCAGACT+GGG 0.609692 6.4:+58250558 MS.gene05454:CDS
TAGTATTGAAGAGGTTGCTG+TGG 0.612031 6.4:+58247442 MS.gene05454:CDS
AGATGACTCAACAATAATGT+GGG 0.612110 6.4:+58251058 MS.gene05454:CDS
ACTCTAGAGGATACACAAGA+AGG 0.617271 6.4:+58253537 MS.gene05454:CDS
GGACACTTTGGTTAAAACCA+TGG 0.620664 6.4:+58250311 MS.gene05454:CDS
CCGGAACGCACTCTTTCGAG+AGG 0.621044 6.4:-58251758 None:intergenic
TGAGCATTGTAGTGAAAGAG+TGG 0.621454 6.4:+58251270 MS.gene05454:CDS
TCCATCATCAGGGAACTCTA+GGG 0.621732 6.4:-58252618 None:intergenic
CCAACGCAAACTACTTGTAG+AGG 0.623092 6.4:+58248653 MS.gene05454:CDS
ACTTGGATAAGAAATGGAAG+CGG 0.623992 6.4:+58248676 MS.gene05454:CDS
TTAAACGGTGCATCCCATCT+GGG 0.624676 6.4:-58250588 None:intergenic
TAGAAATTGAGGAATTGACG+AGG 0.625432 6.4:+58250538 MS.gene05454:CDS
TCAAAGGACTTCCATCATCA+GGG 0.626540 6.4:-58252628 None:intergenic
AAGGTTGCCTCCAAACCAGA+TGG 0.627979 6.4:+58252721 MS.gene05454:CDS
AATGTGTTGTAGAATATCAA+AGG 0.628027 6.4:+58252702 MS.gene05454:CDS
CAACAAAGTGGATCAACCAA+TGG 0.632764 6.4:+58250465 MS.gene05454:CDS
AGTTGAACCCAGTCTGACAT+CGG 0.634963 6.4:-58250565 None:intergenic
AGTGCCCAAGTAAATTTGGA+AGG 0.635986 6.4:+58251701 MS.gene05454:CDS
ATAAAAGTGGATGACCAAGA+AGG 0.639601 6.4:+58251806 MS.gene05454:CDS
ACTGGTTGATGGATCAGTCA+GGG 0.640664 6.4:+58251724 MS.gene05454:CDS
GGACCTACATACATTTGTAG+AGG 0.649209 6.4:+58250515 MS.gene05454:CDS
CTTGTTGCCGCCGATCTCAG+AGG 0.650591 6.4:+58252336 MS.gene05454:CDS
GCGGATCATATTGAATAACT+CGG 0.651378 6.4:+58248695 MS.gene05454:CDS
CACTTTGGTTAAAACCATGG+TGG 0.655161 6.4:+58250314 MS.gene05454:CDS
GGATGACCAAGAAGGATCAA+CGG 0.659729 6.4:+58251814 MS.gene05454:CDS
ATAACCTTGATGAAAGCTTG+GGG 0.660235 6.4:-58248867 None:intergenic
GGCAATAGGACCAGATTCCG+GGG 0.664051 6.4:+58251079 MS.gene05454:CDS
TGAGGGTGCCAACTCTGGAG+AGG 0.665513 6.4:+58251157 MS.gene05454:CDS
GCATCCAGGAGGCAACAAAG+TGG 0.665712 6.4:+58250453 MS.gene05454:CDS
AAACTTCAAGAAAAGAACAA+AGG 0.670892 6.4:+58252392 MS.gene05454:CDS
GGAAGACGTTTCTGACGACA+AGG 0.672222 6.4:+58250494 MS.gene05454:CDS
GAGTGAGCTAGAAACTCTAG+AGG 0.676655 6.4:+58253524 MS.gene05454:CDS
CTTCTGCTTAAGGAAGGAGA+AGG 0.688266 6.4:-58253642 None:intergenic
AAAACTAAAAGTATTTACCG+AGG 0.690759 6.4:+58251652 MS.gene05454:CDS
AGAGTGAAACATCGTCGTCG+CGG 0.704416 6.4:-58250339 None:intergenic
AAGGTTATCAGCTATAGTTG+AGG 0.707519 6.4:+58248882 MS.gene05454:CDS
TCAGACGATTGAATTTGACG+AGG 0.710813 6.4:+58251610 MS.gene05454:CDS
AGTCACTTCCAGCTACCGAG+TGG 0.722155 6.4:+58249912 MS.gene05454:CDS
ACTTGTGCCTCTGAGATCGG+CGG 0.725503 6.4:-58252343 None:intergenic
GTTCCTTCAAAGCATCCAGG+AGG 0.743872 6.4:+58250442 MS.gene05454:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAAAATCCAATT+TGG - chr6.4:58248202-58248221 None:intergenic 10.0%
!! AAGTTTAATATTATATTTGT+AGG + chr6.4:58249969-58249988 MS.gene05454:intron 10.0%
!! TTATCTAAATATGTTTAATT+TGG + chr6.4:58247660-58247679 MS.gene05454:intron 10.0%
!!! ATTGATTCTTTTATTTATTT+AGG + chr6.4:58251859-58251878 MS.gene05454:intron 10.0%
!! ATATATATCAAAATTCCAAA+GGG - chr6.4:58248414-58248433 None:intergenic 15.0%
!! TATATATATCAAAATTCCAA+AGG - chr6.4:58248415-58248434 None:intergenic 15.0%
!!! TAATTTATCTTTTCTTTTTG+CGG + chr6.4:58249147-58249166 MS.gene05454:intron 15.0%
!!! TAGCTTTTATTTGTTATTTT+TGG + chr6.4:58248985-58249004 MS.gene05454:intron 15.0%
!!! TGATTTTCTCAAATTATTAA+CGG + chr6.4:58247992-58248011 MS.gene05454:intron 15.0%
!!! TTTTACAATAATGTCAATAT+AGG - chr6.4:58247836-58247855 None:intergenic 15.0%
!!! TTTTGGATTTTTGTTAAATT+GGG + chr6.4:58247736-58247755 MS.gene05454:intron 15.0%
!!! TTTTTGGATTTTTGTTAAAT+TGG + chr6.4:58247735-58247754 MS.gene05454:intron 15.0%
!! AAAATAACTGGAATGAAAAA+TGG - chr6.4:58247506-58247525 None:intergenic 20.0%
!! AATGATTGATTAATAGAGTA+AGG - chr6.4:58247628-58247647 None:intergenic 20.0%
!! AGAAATAAGTGTTTAATTGA+AGG + chr6.4:58248323-58248342 MS.gene05454:intron 20.0%
!! ATAATTTCATTTATCGAGTT+AGG + chr6.4:58250144-58250163 MS.gene05454:intron 20.0%
!! ATAGTTATCAAATTGTGAAT+TGG + chr6.4:58249012-58249031 MS.gene05454:intron 20.0%
!! ATTAATAGTCTTCATATCAA+GGG + chr6.4:58249704-58249723 MS.gene05454:CDS 20.0%
!! ATTACAACAAACTAACTTAT+TGG - chr6.4:58253039-58253058 None:intergenic 20.0%
!! ATTTATAAAGAACATCTACA+AGG - chr6.4:58248264-58248283 None:intergenic 20.0%
!! GAAAAGAAAAAGAAACTTAA+AGG - chr6.4:58253069-58253088 None:intergenic 20.0%
!! TATTAATAGTCTTCATATCA+AGG + chr6.4:58249703-58249722 MS.gene05454:CDS 20.0%
!! TCCAATAAAAATCACTTATA+TGG - chr6.4:58253262-58253281 None:intergenic 20.0%
!! TCTATCATAGTATCTAAATT+TGG - chr6.4:58252429-58252448 None:intergenic 20.0%
!! TTAGAATAAAATATCTCGAA+GGG + chr6.4:58253342-58253361 MS.gene05454:intron 20.0%
!! TTATTTATTTAGGCTCTATT+TGG + chr6.4:58251869-58251888 MS.gene05454:intron 20.0%
!!! AAAACTATTGACTAATGTTA+GGG + chr6.4:58248092-58248111 MS.gene05454:intron 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG + chr6.4:58252026-58252045 MS.gene05454:intron 20.0%
!!! AATATAAATAGAAGTGTCTT+TGG - chr6.4:58252906-58252925 None:intergenic 20.0%
!!! ACGAATCTTATTAACATTTT+GGG - chr6.4:58247872-58247891 None:intergenic 20.0%
!!! AGTTATTTTAAGTTTCTTTC+CGG - chr6.4:58251384-58251403 None:intergenic 20.0%
!!! ATTTGATAACATATTTAGAC+AGG + chr6.4:58248120-58248139 MS.gene05454:intron 20.0%
!!! CATGAAATTTATTTTCTTTG+AGG + chr6.4:58247766-58247785 MS.gene05454:intron 20.0%
!!! TAAAACTATTGACTAATGTT+AGG + chr6.4:58248091-58248110 MS.gene05454:intron 20.0%
!!! TAAAATGCATTCATTGTTTT+TGG + chr6.4:58247719-58247738 MS.gene05454:intron 20.0%
!!! TGTTGTTTAATTTTCAGTAT+GGG + chr6.4:58248625-58248644 MS.gene05454:intron 20.0%
!!! TTGGTAATAATTTAAGAACA+TGG + chr6.4:58248506-58248525 MS.gene05454:intron 20.0%
!!! TTTGATAACATATTTAGACA+GGG + chr6.4:58248121-58248140 MS.gene05454:intron 20.0%
!!! TTTGGATTTTTGTTAAATTG+GGG + chr6.4:58247737-58247756 MS.gene05454:intron 20.0%
! AAACTTCAAGAAAAGAACAA+AGG + chr6.4:58252392-58252411 MS.gene05454:CDS 25.0%
! AACTACAACAAGTAAAAACA+AGG - chr6.4:58248928-58248947 None:intergenic 25.0%
! AATGTGTTGTAGAATATCAA+AGG + chr6.4:58252702-58252721 MS.gene05454:CDS 25.0%
! AGTAAAAACAAGGAGAATAA+CGG - chr6.4:58248918-58248937 None:intergenic 25.0%
! CAACTTCATATAAAGAACAT+TGG - chr6.4:58248753-58248772 None:intergenic 25.0%
! CATTAAATTGCAATATGGAA+AGG + chr6.4:58251463-58251482 MS.gene05454:CDS 25.0%
! CCATACATTAAATTGCAATA+TGG + chr6.4:58251458-58251477 MS.gene05454:CDS 25.0%
! CCATATTGCAATTTAATGTA+TGG - chr6.4:58251461-58251480 None:intergenic 25.0%
! CTAACAAATTACATATACAG+GGG - chr6.4:58248225-58248244 None:intergenic 25.0%
! CTCAAAAGTAGAATATCAAA+AGG - chr6.4:58250720-58250739 None:intergenic 25.0%
! CTTAAAATAACTGTTGTAGA+AGG + chr6.4:58251392-58251411 MS.gene05454:CDS 25.0%
! CTTATCGTAGTATAAAAACA+TGG - chr6.4:58251001-58251020 None:intergenic 25.0%
! GCTAACAAATTACATATACA+GGG - chr6.4:58248226-58248245 None:intergenic 25.0%
! GTTAGAATAAAATATCTCGA+AGG + chr6.4:58253341-58253360 MS.gene05454:intron 25.0%
! TAAAATAGAAGCCATAAAAG+TGG + chr6.4:58251793-58251812 MS.gene05454:CDS 25.0%
! TAAATAAGAGTTCCAAAATC+AGG - chr6.4:58248295-58248314 None:intergenic 25.0%
! TCAAATAAGCTAATCCAAAT+TGG + chr6.4:58252116-58252135 MS.gene05454:intron 25.0%
! TCAAATATTCAGTTAAGAAC+CGG + chr6.4:58251362-58251381 MS.gene05454:CDS 25.0%
! TCATGCAAAACCATATTAAA+CGG - chr6.4:58250606-58250625 None:intergenic 25.0%
! TGCTAACAAATTACATATAC+AGG - chr6.4:58248227-58248246 None:intergenic 25.0%
! TTTCATAGATGATGAATGTT+TGG + chr6.4:58249271-58249290 MS.gene05454:intron 25.0%
! TTTCTATGACAAGAGATAAA+AGG + chr6.4:58251961-58251980 MS.gene05454:intron 25.0%
!! CACTTTTACTTACTCTATTA+TGG + chr6.4:58252202-58252221 MS.gene05454:intron 25.0%
!! CTGTTCTTCATAATATTTTC+AGG + chr6.4:58251541-58251560 MS.gene05454:intron 25.0%
!! GAATTTGTAAAAAAGTACAG+TGG + chr6.4:58253280-58253299 MS.gene05454:intron 25.0%
!! GACGAATCTTATTAACATTT+TGG - chr6.4:58247873-58247892 None:intergenic 25.0%
!! GCCATATAAGTGATTTTTAT+TGG + chr6.4:58253258-58253277 MS.gene05454:intron 25.0%
!! GTTTTACTTACAAGAAATCT+TGG - chr6.4:58249200-58249219 None:intergenic 25.0%
!! TAAACACTTATTTCTCCAAT+TGG - chr6.4:58248318-58248337 None:intergenic 25.0%
!! TATGTAGGAAAAACTTTTCA+CGG + chr6.4:58250290-58250309 MS.gene05454:intron 25.0%
!! TCTATACTTTCTAGTGATAT+TGG + chr6.4:58249511-58249530 MS.gene05454:intron 25.0%
!! TTCAATTGATAGTATTGAAG+AGG + chr6.4:58247433-58247452 MS.gene05454:CDS 25.0%
!! TTGATAACATATTTAGACAG+GGG + chr6.4:58248122-58248141 MS.gene05454:intron 25.0%
!! TTTTTATTCAGCAAACAACA+CGG + chr6.4:58248951-58248970 MS.gene05454:intron 25.0%
!!! AAAACTAAAAGTATTTACCG+AGG + chr6.4:58251652-58251671 MS.gene05454:CDS 25.0%
!!! ACATTTTGACTATGTTAATC+TGG + chr6.4:58248159-58248178 MS.gene05454:intron 25.0%
!!! ACGTGATCTTCATTATTTTT+AGG + chr6.4:58252995-58253014 MS.gene05454:intron 25.0%
!!! CTGTTGTTTAATTTTCAGTA+TGG + chr6.4:58248624-58248643 MS.gene05454:intron 25.0%
!!! TATTTTAAGTCTGATTTCTC+CGG - chr6.4:58251780-58251799 None:intergenic 25.0%
!!! TGAATTGGAAGACTTATTTT+TGG + chr6.4:58249027-58249046 MS.gene05454:intron 25.0%
!!! TGCTGTTGATTTAAGAAAAA+AGG + chr6.4:58250365-58250384 MS.gene05454:CDS 25.0%
!!! TGTTGATTTAAGAAAAAAGG+CGG + chr6.4:58250368-58250387 MS.gene05454:CDS 25.0%
!!! TTTTTTCTTAAATCAACAGC+AGG - chr6.4:58250366-58250385 None:intergenic 25.0%
AAAATCACTTATATGGCTAC+TGG - chr6.4:58253255-58253274 None:intergenic 30.0%
AACAGATGATGATCAAGTTT+AGG + chr6.4:58253457-58253476 MS.gene05454:CDS 30.0%
AACTGTAATATGAAGAGAAG+AGG - chr6.4:58251245-58251264 None:intergenic 30.0%
AAGAACATTGGCAATTTCAT+AGG - chr6.4:58248741-58248760 None:intergenic 30.0%
AAGATGACTCAACAATAATG+TGG + chr6.4:58251057-58251076 MS.gene05454:CDS 30.0%
AAGCAAAATGCTCATTTCAT+GGG - chr6.4:58249639-58249658 None:intergenic 30.0%
AATAACTGTTGTAGAAGGAA+AGG + chr6.4:58251397-58251416 MS.gene05454:CDS 30.0%
ACTTATTTCCATAAGCTCTT+AGG - chr6.4:58252013-58252032 None:intergenic 30.0%
AGAGTATGTTGAATAGAATG+TGG - chr6.4:58249116-58249135 None:intergenic 30.0%
AGATGACTCAACAATAATGT+GGG + chr6.4:58251058-58251077 MS.gene05454:CDS 30.0%
ATAAACTGTTGACAGAAATC+TGG + chr6.4:58248830-58248849 MS.gene05454:CDS 30.0%
ATACTAGATGTGGCATTATT+TGG + chr6.4:58252555-58252574 MS.gene05454:intron 30.0%
ATTTGTAGAGGTAGAAATTG+AGG + chr6.4:58250527-58250546 MS.gene05454:CDS 30.0%
CCTTTGAGTGAAGAAAAAAT+TGG + chr6.4:58251192-58251211 MS.gene05454:intron 30.0%
GAGAAGAATTAATGATCTCT+TGG - chr6.4:58253623-58253642 None:intergenic 30.0%
GAGTGAAGAAAAAATTGGTA+TGG + chr6.4:58251197-58251216 MS.gene05454:intron 30.0%
GGAATGAAAAATGGAATCTT+TGG - chr6.4:58247497-58247516 None:intergenic 30.0%
GGCAATTTCATAGGAAAAAT+AGG - chr6.4:58248732-58248751 None:intergenic 30.0%
GTAAAAGAATGAGGTAGTTT+AGG - chr6.4:58250024-58250043 None:intergenic 30.0%
TCTAGGAAGTTGTGAAATTA+AGG + chr6.4:58250689-58250708 MS.gene05454:CDS 30.0%
TCTCAAATTATTAACGGTGT+CGG + chr6.4:58247998-58248017 MS.gene05454:intron 30.0%
TCTCTTCATATTACAGTTGA+AGG + chr6.4:58251247-58251266 MS.gene05454:intron 30.0%
TGATAACATATTTAGACAGG+GGG + chr6.4:58248123-58248142 MS.gene05454:intron 30.0%
TGGTGTAATTTACTCAAAGA+AGG - chr6.4:58252851-58252870 None:intergenic 30.0%
TGTTAATAAGATTCGTCGAT+CGG + chr6.4:58247876-58247895 MS.gene05454:intron 30.0%
TTACAAGAAATCTTGGTTTC+CGG - chr6.4:58249193-58249212 None:intergenic 30.0%
TTACTACCTACATCAAGTAT+AGG + chr6.4:58252677-58252696 MS.gene05454:CDS 30.0%
TTATGTTAGAAGAACAACGA+TGG - chr6.4:58249755-58249774 None:intergenic 30.0%
TTCAAGAAAAGAACAAAGGT+TGG + chr6.4:58252396-58252415 MS.gene05454:intron 30.0%
TTGTGGAGATGAAATTGAAA+TGG + chr6.4:58251124-58251143 MS.gene05454:CDS 30.0%
TTTCAGCCAATAAACTTTCT+AGG + chr6.4:58250418-58250437 MS.gene05454:CDS 30.0%
! AAATTGTAGTGACCTGATTT+TGG + chr6.4:58248280-58248299 MS.gene05454:intron 30.0%
! ACTTTCTAGTGATATTGGTA+GGG + chr6.4:58249516-58249535 MS.gene05454:intron 30.0%
! AGCTGATTCTAATGATTCAA+TGG + chr6.4:58250121-58250140 MS.gene05454:intron 30.0%
! ATAGAACTTGTTCTGATTGA+AGG + chr6.4:58252306-58252325 MS.gene05454:CDS 30.0%
! CTACCTCATTCTTTTACTTA+TGG + chr6.4:58250027-58250046 MS.gene05454:intron 30.0%
! CTTTGAGGAAATACTCAATT+TGG + chr6.4:58247781-58247800 MS.gene05454:intron 30.0%
! GGTCTTTTCTTTTTCTACTT+GGG + chr6.4:58247550-58247569 MS.gene05454:CDS 30.0%
! GTAAAAAAGTACAGTGGTAT+TGG + chr6.4:58253286-58253305 MS.gene05454:intron 30.0%
! TAATTTGGTGAGAATTGTCT+TGG + chr6.4:58247675-58247694 MS.gene05454:intron 30.0%
! TACTTTCTAGTGATATTGGT+AGG + chr6.4:58249515-58249534 MS.gene05454:intron 30.0%
! TAGAACTTGTTCTGATTGAA+GGG + chr6.4:58252307-58252326 MS.gene05454:CDS 30.0%
! TGGAACTCTTATTTACCAAT+TGG + chr6.4:58248300-58248319 MS.gene05454:intron 30.0%
! TGTGTTGTTATTCAGTTCAA+AGG + chr6.4:58252927-58252946 MS.gene05454:intron 30.0%
! TTCTTTTTCTTTTCCTAGCT+AGG + chr6.4:58253075-58253094 MS.gene05454:intron 30.0%
! TTTCTTCAACTATGTTTTGC+AGG + chr6.4:58247466-58247485 MS.gene05454:CDS 30.0%
!! AAACCTTGGTGCTATATATA+TGG + chr6.4:58248586-58248605 MS.gene05454:intron 30.0%
!! ATGGTTTTGCATGATAATAC+AGG + chr6.4:58250612-58250631 MS.gene05454:CDS 30.0%
!!! ATCTTTACACCGATTTTAGA+TGG + chr6.4:58249815-58249834 MS.gene05454:CDS 30.0%
!!! CCAATTTTTTCTTCACTCAA+AGG - chr6.4:58251195-58251214 None:intergenic 30.0%
!!! TATGCAACTTGGTTTTGATT+GGG + chr6.4:58249610-58249629 MS.gene05454:CDS 30.0%
!!! TTATGCAACTTGGTTTTGAT+TGG + chr6.4:58249609-58249628 MS.gene05454:CDS 30.0%
!!! TTCTACTTTTTCTGCTATGT+AGG + chr6.4:58250275-58250294 MS.gene05454:intron 30.0%
!!! TTTTTTCATCTTGTGACCAA+AGG - chr6.4:58252142-58252161 None:intergenic 30.0%
AAACTAACTTATTGGACTGC+AGG - chr6.4:58253031-58253050 None:intergenic 35.0%
AACACAACAATGTGCACATT+TGG - chr6.4:58253113-58253132 None:intergenic 35.0%
AAGCTTGGGGTTAAAATAGT+TGG - chr6.4:58248857-58248876 None:intergenic 35.0%
AAGGTTATCAGCTATAGTTG+AGG + chr6.4:58248882-58248901 MS.gene05454:CDS 35.0%
AAGTGATTGAATGTAACCAC+AGG + chr6.4:58248529-58248548 MS.gene05454:intron 35.0%
AATGTCTGTGCTTGGTTATA+TGG - chr6.4:58248488-58248507 None:intergenic 35.0%
AATGTGAAGTGTGACTATCT+AGG + chr6.4:58250672-58250691 MS.gene05454:CDS 35.0%
AATTTGGTCACTGAAGTTGT+AGG + chr6.4:58247797-58247816 MS.gene05454:intron 35.0%
ACATTAAGGAAAATCTCACC+TGG - chr6.4:58252883-58252902 None:intergenic 35.0%
ACGCCATAAGTAAAAGAATG+AGG - chr6.4:58250033-58250052 None:intergenic 35.0%
ACTCCATATATATAGCACCA+AGG - chr6.4:58248592-58248611 None:intergenic 35.0%
ACTTGGATAAGAAATGGAAG+CGG + chr6.4:58248676-58248695 MS.gene05454:CDS 35.0%
AGCACAACATGAAAACGATA+GGG - chr6.4:58253395-58253414 None:intergenic 35.0%
AGCTTGGGGTTAAAATAGTT+GGG - chr6.4:58248856-58248875 None:intergenic 35.0%
ATAAAAGTGGATGACCAAGA+AGG + chr6.4:58251806-58251825 MS.gene05454:CDS 35.0%
ATAACCTTGATGAAAGCTTG+GGG - chr6.4:58248870-58248889 None:intergenic 35.0%
ATAGTCACACTTCACATTGT+TGG - chr6.4:58250670-58250689 None:intergenic 35.0%
ATATAACCAAGCACAGACAT+TGG + chr6.4:58248487-58248506 MS.gene05454:intron 35.0%
ATCGAAGATGGAAATCTTGA+AGG + chr6.4:58253486-58253505 MS.gene05454:CDS 35.0%
ATGTAGGTAGTAACGCATTA+TGG - chr6.4:58252670-58252689 None:intergenic 35.0%
CACAAGTGATCCATATGTTA+GGG + chr6.4:58252359-58252378 MS.gene05454:CDS 35.0%
CATTCACCTATACTTGATGT+AGG - chr6.4:58252686-58252705 None:intergenic 35.0%
CTACCTCTACAAATGTATGT+AGG - chr6.4:58250521-58250540 None:intergenic 35.0%
CTCATACTCCAAATCCTATT+TGG + chr6.4:58251585-58251604 MS.gene05454:CDS 35.0%
GAAGCAAAATGCTCATTTCA+TGG - chr6.4:58249640-58249659 None:intergenic 35.0%
GATAACATATTTAGACAGGG+GGG + chr6.4:58248124-58248143 MS.gene05454:intron 35.0%
GATAACCTTGATGAAAGCTT+GGG - chr6.4:58248871-58248890 None:intergenic 35.0%
GATTTAAGAAAAAAGGCGGT+TGG + chr6.4:58250372-58250391 MS.gene05454:CDS 35.0%
GCACAAGCAATCAAAATAAC+TGG - chr6.4:58247518-58247537 None:intergenic 35.0%
GCCAAGACAATGAACTTATA+AGG - chr6.4:58250207-58250226 None:intergenic 35.0%
GCCTTATAAGTTCATTGTCT+TGG + chr6.4:58250203-58250222 MS.gene05454:intron 35.0%
GCGGATCATATTGAATAACT+CGG + chr6.4:58248695-58248714 MS.gene05454:CDS 35.0%
GCTATAACACTATAGCATAG+CGG - chr6.4:58250905-58250924 None:intergenic 35.0%
GGAACTCCTAGAAAGTTTAT+TGG - chr6.4:58250427-58250446 None:intergenic 35.0%
GGTGAAAAAAACTAAGATCG+AGG + chr6.4:58248344-58248363 MS.gene05454:intron 35.0%
GTCTGATTCCAAATAGGATT+TGG - chr6.4:58251596-58251615 None:intergenic 35.0%
TAGAAATTGAGGAATTGACG+AGG + chr6.4:58250538-58250557 MS.gene05454:CDS 35.0%
TAGAGGACTTGGATAAGAAA+TGG + chr6.4:58248670-58248689 MS.gene05454:CDS 35.0%
TAGTCACACTTCACATTGTT+GGG - chr6.4:58250669-58250688 None:intergenic 35.0%
TATGGAAAGGTAAGTAACAC+TGG + chr6.4:58251476-58251495 MS.gene05454:intron 35.0%
TCAACAATAATGTGGGCAAT+AGG + chr6.4:58251065-58251084 MS.gene05454:CDS 35.0%
TCAACTCTTTCCTACACAAA+AGG - chr6.4:58249322-58249341 None:intergenic 35.0%
TCAATCGTCTGATTCCAAAT+AGG - chr6.4:58251602-58251621 None:intergenic 35.0%
TCACAAATCGCAGAAAATAG+CGG + chr6.4:58250795-58250814 MS.gene05454:intron 35.0%
TCATTACAAAAACGTTTGCG+TGG + chr6.4:58253144-58253163 MS.gene05454:intron 35.0%
TCCTCGCTGAAAATAAAATC+TGG - chr6.4:58250976-58250995 None:intergenic 35.0%
TCCTTTGATGCTTTATGTGA+AGG + chr6.4:58252643-58252662 MS.gene05454:CDS 35.0%
TGACAACACTATCTTCATTC+AGG + chr6.4:58250941-58250960 MS.gene05454:intron 35.0%
TGATAACCTTGATGAAAGCT+TGG - chr6.4:58248872-58248891 None:intergenic 35.0%
TGCAATTTCAGTGACCAAAT+TGG + chr6.4:58248185-58248204 MS.gene05454:intron 35.0%
TTATTACCAATGTCTGTGCT+TGG - chr6.4:58248496-58248515 None:intergenic 35.0%
TTCAGAATGTCTTCTGCTTA+AGG - chr6.4:58253655-58253674 None:intergenic 35.0%
TTTAGGTCTCAAATCGAAGA+TGG + chr6.4:58253474-58253493 MS.gene05454:CDS 35.0%
! AAAACTTTTCACGGACACTT+TGG + chr6.4:58250299-58250318 MS.gene05454:CDS 35.0%
! AAAGAGTGGCAATTTTCTGA+TGG + chr6.4:58251284-58251303 MS.gene05454:CDS 35.0%
! AAAGGGTGTACATGAGAATA+GGG - chr6.4:58248397-58248416 None:intergenic 35.0%
! ACACCTTCAATTTGAAACCT+TGG + chr6.4:58248572-58248591 MS.gene05454:intron 35.0%
! AGTGCTCTTCCATCTAAAAT+CGG - chr6.4:58249827-58249846 None:intergenic 35.0%
! CTTTTCGGAGATGAAAACAT+TGG + chr6.4:58251677-58251696 MS.gene05454:CDS 35.0%
! GGGTCTTTTCTTTTTCTACT+TGG + chr6.4:58247549-58247568 MS.gene05454:CDS 35.0%
! GTATTTACCGAGGAACTTTT+CGG + chr6.4:58251662-58251681 MS.gene05454:CDS 35.0%
! GTTTCAAATTGAAGGTGTGT+CGG - chr6.4:58248570-58248589 None:intergenic 35.0%
! TCCTTCACATAAAGCATCAA+AGG - chr6.4:58252647-58252666 None:intergenic 35.0%
! TCTTTTCTTTTTGCGGTTCT+AGG + chr6.4:58249154-58249173 MS.gene05454:intron 35.0%
! TGCTTGTGCTGTTGAAAAAT+GGG + chr6.4:58247529-58247548 MS.gene05454:CDS 35.0%
! TTGCTTGTGCTGTTGAAAAA+TGG + chr6.4:58247528-58247547 MS.gene05454:CDS 35.0%
!! AGAAGTGTCTTTGGACATTA+AGG - chr6.4:58252897-58252916 None:intergenic 35.0%
!! TTCTTGGTCATCCACTTTTA+TGG - chr6.4:58251807-58251826 None:intergenic 35.0%
!!! TCCAGATTTTATTTTCAGCG+AGG + chr6.4:58250972-58250991 MS.gene05454:intron 35.0%
AACTCTCAGCAGTCACTTAA+CGG + chr6.4:58251335-58251354 MS.gene05454:CDS 40.0%
AAGCTACTCCTAAGAGCTTA+TGG + chr6.4:58252002-58252021 MS.gene05454:intron 40.0%
AAGTTCCAGAAATGCAGAAG+AGG + chr6.4:58252807-58252826 MS.gene05454:CDS 40.0%
AATCGCAGAAAATAGCGGTT+TGG + chr6.4:58250800-58250819 MS.gene05454:intron 40.0%
AATGCAGAAGAGGCAAAGTA+TGG + chr6.4:58252817-58252836 MS.gene05454:CDS 40.0%
ACAAAACTCTAACCCCTCAA+TGG + chr6.4:58252588-58252607 MS.gene05454:CDS 40.0%
ACAACAATGTGCACATTTGG+AGG - chr6.4:58253110-58253129 None:intergenic 40.0%
ACCTCTTCAAGGTGTGAAAA+AGG + chr6.4:58252757-58252776 MS.gene05454:CDS 40.0%
ACCTGGCTTAATACTAGATG+TGG + chr6.4:58252545-58252564 MS.gene05454:intron 40.0%
ACGATTGAATTTGACGAGGT+TGG + chr6.4:58251614-58251633 MS.gene05454:CDS 40.0%
ACTTGTTCTGATTGAAGGGA+GGG + chr6.4:58252311-58252330 MS.gene05454:CDS 40.0%
AGAATGTGGCATCAAGACTT+CGG - chr6.4:58249102-58249121 None:intergenic 40.0%
ATATAGTACCTCTCCAGAGT+TGG - chr6.4:58251168-58251187 None:intergenic 40.0%
ATCAAAGGACTTCCATCATC+AGG - chr6.4:58252632-58252651 None:intergenic 40.0%
ATGGGATGCACCGTTTAATA+TGG + chr6.4:58250593-58250612 MS.gene05454:CDS 40.0%
ATTACACCAAATTCCTAGCC+AGG + chr6.4:58252862-58252881 MS.gene05454:CDS 40.0%
ATTGAATTTGACGAGGTTGG+TGG + chr6.4:58251617-58251636 MS.gene05454:CDS 40.0%
CAAACTACTTGTAGAGGACT+TGG + chr6.4:58248659-58248678 MS.gene05454:CDS 40.0%
CAACAAAGTGGATCAACCAA+TGG + chr6.4:58250465-58250484 MS.gene05454:CDS 40.0%
CACTTCTTCGATAATGACCA+GGG + chr6.4:58252261-58252280 MS.gene05454:intron 40.0%
CACTTTGGTTAAAACCATGG+TGG + chr6.4:58250314-58250333 MS.gene05454:CDS 40.0%
CAGCACAACATGAAAACGAT+AGG - chr6.4:58253396-58253415 None:intergenic 40.0%
CCATAGTGTACCCTAACATA+TGG - chr6.4:58252372-58252391 None:intergenic 40.0%
CCATATGTTAGGGTACACTA+TGG + chr6.4:58252369-58252388 MS.gene05454:CDS 40.0%
CCTCTTCAAGGTGTGAAAAA+GGG + chr6.4:58252758-58252777 MS.gene05454:CDS 40.0%
CGAGAATCTATGAAAACTCC+TGG - chr6.4:58252516-58252535 None:intergenic 40.0%
CTATTCTCATGTACACCCTT+TGG + chr6.4:58248396-58248415 MS.gene05454:intron 40.0%
CTCAGCAAGATAAAGGAACT+TGG + chr6.4:58253597-58253616 MS.gene05454:CDS 40.0%
CTCTCCAAAACAGTCTCAAA+GGG + chr6.4:58252074-58252093 MS.gene05454:intron 40.0%
GAAATGGTTGTCCCATTTGA+GGG + chr6.4:58251140-58251159 MS.gene05454:CDS 40.0%
GAATGTCTTCTGCTTAAGGA+AGG - chr6.4:58253651-58253670 None:intergenic 40.0%
GACTTTACGAGTCAAGTGTA+TGG + chr6.4:58252485-58252504 MS.gene05454:intron 40.0%
GATAAGTGGATACCTCTTCA+AGG + chr6.4:58252746-58252765 MS.gene05454:CDS 40.0%
GATTCTCGAGTTCAATAACC+TGG + chr6.4:58252528-58252547 MS.gene05454:intron 40.0%
GCACAAGTGATCCATATGTT+AGG + chr6.4:58252358-58252377 MS.gene05454:CDS 40.0%
GCACCAAGGTTTCAAATTGA+AGG - chr6.4:58248578-58248597 None:intergenic 40.0%
GCTGCTGCAAAAGAAAAATC+TGG + chr6.4:58251425-58251444 MS.gene05454:CDS 40.0%
GCTTCTTCTCAGCAAGATAA+AGG + chr6.4:58253590-58253609 MS.gene05454:CDS 40.0%
GGACACTTTGGTTAAAACCA+TGG + chr6.4:58250311-58250330 MS.gene05454:CDS 40.0%
GGACCTACATACATTTGTAG+AGG + chr6.4:58250515-58250534 MS.gene05454:CDS 40.0%
GTAATTGTATGTGTCCGTGT+TGG - chr6.4:58247961-58247980 None:intergenic 40.0%
TAAGAAAAAAGGCGGTTGGA+GGG + chr6.4:58250376-58250395 MS.gene05454:CDS 40.0%
TAGATGTGGCATTATTTGGC+AGG + chr6.4:58252559-58252578 MS.gene05454:intron 40.0%
TCAAAGGACTTCCATCATCA+GGG - chr6.4:58252631-58252650 None:intergenic 40.0%
TCACTTCTTCGATAATGACC+AGG + chr6.4:58252260-58252279 MS.gene05454:intron 40.0%
TCAGACGATTGAATTTGACG+AGG + chr6.4:58251610-58251629 MS.gene05454:CDS 40.0%
TGAAATGGTTGTCCCATTTG+AGG + chr6.4:58251139-58251158 MS.gene05454:CDS 40.0%
TGGAAGTTACTGGTATGTCA+CGG + chr6.4:58253164-58253183 MS.gene05454:intron 40.0%
TGGATCAACCAATGGTTCTT+CGG + chr6.4:58250473-58250492 MS.gene05454:CDS 40.0%
TTAACCCCAAGCTTTCATCA+AGG + chr6.4:58248863-58248882 MS.gene05454:CDS 40.0%
TTAAGAAAAAAGGCGGTTGG+AGG + chr6.4:58250375-58250394 MS.gene05454:CDS 40.0%
TTACAGCGAGTTATGCAACT+TGG + chr6.4:58249599-58249618 MS.gene05454:intron 40.0%
TTACTGGTATGTCACGGATT+AGG + chr6.4:58253170-58253189 MS.gene05454:intron 40.0%
TTCATCTCCGAAAAGTTCCT+CGG - chr6.4:58251672-58251691 None:intergenic 40.0%
TTGGTGAGAATTGTCTTGGT+TGG + chr6.4:58247679-58247698 MS.gene05454:intron 40.0%
! AACTTGTTCTGATTGAAGGG+AGG + chr6.4:58252310-58252329 MS.gene05454:CDS 40.0%
! ACTCTAGAGGATACACAAGA+AGG + chr6.4:58253537-58253556 MS.gene05454:CDS 40.0%
! CAAAGGGTGTACATGAGAAT+AGG - chr6.4:58248398-58248417 None:intergenic 40.0%
! GAGTTGCAAGAGTTTTCACT+TGG + chr6.4:58249340-58249359 MS.gene05454:CDS 40.0%
! GCAAAGCAAGCACAATTTTG+TGG + chr6.4:58251107-58251126 MS.gene05454:CDS 40.0%
! TAGTATTGAAGAGGTTGCTG+TGG + chr6.4:58247442-58247461 MS.gene05454:CDS 40.0%
! TATATGGCTACTGGTCTGAT+GGG - chr6.4:58253246-58253265 None:intergenic 40.0%
! TGAGCATTGTAGTGAAAGAG+TGG + chr6.4:58251270-58251289 MS.gene05454:CDS 40.0%
! TTATATGGCTACTGGTCTGA+TGG - chr6.4:58253247-58253266 None:intergenic 40.0%
!! AATTATTAACGGTGTCGGTG+TGG + chr6.4:58248003-58248022 MS.gene05454:intron 40.0%
!! AATTTGGAAGGACTGGTTGA+TGG + chr6.4:58251713-58251732 MS.gene05454:CDS 40.0%
!! AGCTAATCCAAATTGGCCTT+TGG + chr6.4:58252123-58252142 MS.gene05454:intron 40.0%
!! CATAGGTACTGGCATTAAGT+TGG + chr6.4:58248051-58248070 MS.gene05454:intron 40.0%
!! CTAAGATCGAGGTAGTTTTG+TGG + chr6.4:58248355-58248374 MS.gene05454:intron 40.0%
!! TAGAGTTTCTAGCTCACTCA+AGG - chr6.4:58253523-58253542 None:intergenic 40.0%
!!! TAAGCCCTTTGAGACTGTTT+TGG - chr6.4:58252081-58252100 None:intergenic 40.0%
AACACACCGTTGATCCTTCT+TGG - chr6.4:58251823-58251842 None:intergenic 45.0%
AACGTCTTCCGAAGAACCAT+TGG - chr6.4:58250484-58250503 None:intergenic 45.0%
AACGTTTGCGTGGAAGTTAC+TGG + chr6.4:58253154-58253173 MS.gene05454:intron 45.0%
AAGCTTGCGAAGCCATTGAT+GGG + chr6.4:58249665-58249684 MS.gene05454:CDS 45.0%
AAGGAAAATCTCACCTGGCT+AGG - chr6.4:58252878-58252897 None:intergenic 45.0%
AGTTGAACCCAGTCTGACAT+CGG - chr6.4:58250568-58250587 None:intergenic 45.0%
ATCTCACCTGGCTAGGAATT+TGG - chr6.4:58252871-58252890 None:intergenic 45.0%
ATGCCAGTACCTATGATGCA+CGG - chr6.4:58248046-58248065 None:intergenic 45.0%
ATGGATCAGTCAGGGATGTA+TGG + chr6.4:58251732-58251751 MS.gene05454:CDS 45.0%
ATTAAACGGTGCATCCCATC+TGG - chr6.4:58250592-58250611 None:intergenic 45.0%
ATTCGTGCAGTTCCCATCAA+TGG - chr6.4:58249680-58249699 None:intergenic 45.0%
CAAACCAGATGGCTGATAAG+TGG + chr6.4:58252732-58252751 MS.gene05454:CDS 45.0%
CACTTATCAGCCATCTGGTT+TGG - chr6.4:58252734-58252753 None:intergenic 45.0%
CATATAGCCCATCACACCAT+TGG + chr6.4:58248789-58248808 MS.gene05454:intron 45.0%
CCAACGCAAACTACTTGTAG+AGG + chr6.4:58248653-58248672 MS.gene05454:CDS 45.0%
CTTCTGCTTAAGGAAGGAGA+AGG - chr6.4:58253645-58253664 None:intergenic 45.0%
CTTGTGACCAAAGGCCAATT+TGG - chr6.4:58252133-58252152 None:intergenic 45.0%
CTTTGCCTCTTCTGCATTTC+TGG - chr6.4:58252815-58252834 None:intergenic 45.0%
GAGGCTAAAAAGACCTAGCT+AGG - chr6.4:58253091-58253110 None:intergenic 45.0%
GAGTGAGCTAGAAACTCTAG+AGG + chr6.4:58253524-58253543 MS.gene05454:CDS 45.0%
GCATCAAGACTTCGGATTCA+TGG - chr6.4:58249094-58249113 None:intergenic 45.0%
GCCACATCTAGTATTAAGCC+AGG - chr6.4:58252549-58252568 None:intergenic 45.0%
GCTCTCCAAAACAGTCTCAA+AGG + chr6.4:58252073-58252092 MS.gene05454:intron 45.0%
GGATGACCAAGAAGGATCAA+CGG + chr6.4:58251814-58251833 MS.gene05454:CDS 45.0%
GGGATGAGATGGTCAACTAT+CGG + chr6.4:58249391-58249410 MS.gene05454:CDS 45.0%
GTATCCACTTATCAGCCATC+TGG - chr6.4:58252739-58252758 None:intergenic 45.0%
GTCAAGTGTATGGAGATTCC+AGG + chr6.4:58252495-58252514 MS.gene05454:intron 45.0%
GTGACTGCTGAGAGTTGTTT+CGG - chr6.4:58251331-58251350 None:intergenic 45.0%
TAAGCTTGCGAAGCCATTGA+TGG + chr6.4:58249664-58249683 MS.gene05454:CDS 45.0%
TATGAAGCACGGACACTCTT+CGG + chr6.4:58247900-58247919 MS.gene05454:intron 45.0%
TCCATCATCAGGGAACTCTA+GGG - chr6.4:58252621-58252640 None:intergenic 45.0%
TGACCATCTCATCCCTTGTA+AGG - chr6.4:58249386-58249405 None:intergenic 45.0%
TTAAACGGTGCATCCCATCT+GGG - chr6.4:58250591-58250610 None:intergenic 45.0%
TTCCATCATCAGGGAACTCT+AGG - chr6.4:58252622-58252641 None:intergenic 45.0%
TTCGATAATGACCAGGGTTC+AGG + chr6.4:58252267-58252286 MS.gene05454:intron 45.0%
TTCGTTTGTATCAGCTCCTG+AGG + chr6.4:58249853-58249872 MS.gene05454:CDS 45.0%
TTGATGTCTTTGTGCAGCTG+AGG + chr6.4:58251027-58251046 MS.gene05454:intron 45.0%
! CCTCTACAAGTAGTTTGCGT+TGG - chr6.4:58248656-58248675 None:intergenic 45.0%
! TGCTGTTTGGGCTACTATAC+AGG + chr6.4:58247586-58247605 MS.gene05454:CDS 45.0%
! TGCTTGCTTTGCTATAACCC+CGG - chr6.4:58251099-58251118 None:intergenic 45.0%
! TTTGCTATAACCCCGGAATC+TGG - chr6.4:58251092-58251111 None:intergenic 45.0%
!! ACTGGTTGATGGATCAGTCA+GGG + chr6.4:58251724-58251743 MS.gene05454:CDS 45.0%
!! ATCACTTGTGCCTCTGAGAT+CGG - chr6.4:58252349-58252368 None:intergenic 45.0%
!! CCCTTTTTCACACCTTGAAG+AGG - chr6.4:58252761-58252780 None:intergenic 45.0%
!! CTAGAGCACTCCTTTTGTGT+AGG + chr6.4:58249309-58249328 MS.gene05454:intron 45.0%
!! GTATTGGTGCGCACATTTTG+AGG + chr6.4:58253302-58253321 MS.gene05454:intron 45.0%
!! TCCTCTTGCACTTGCTGTTT+GGG + chr6.4:58247574-58247593 MS.gene05454:CDS 45.0%
!! TTATCAGCCATCTGGTTTGG+AGG - chr6.4:58252731-58252750 None:intergenic 45.0%
!! TTCCTCTTGCACTTGCTGTT+TGG + chr6.4:58247573-58247592 MS.gene05454:CDS 45.0%
AAGGTTGCCTCCAAACCAGA+TGG + chr6.4:58252721-58252740 MS.gene05454:CDS 50.0%
ACAGTGCTCCAATGGTGTGA+TGG - chr6.4:58248800-58248819 None:intergenic 50.0%
ACCAGCCAAGAAGAAACACC+GGG - chr6.4:58249938-58249957 None:intergenic 50.0%
ACCCTAGAGTTCCCTGATGA+TGG + chr6.4:58252617-58252636 MS.gene05454:CDS 50.0%
ACTGGGTTCAACTCCCAGAT+GGG + chr6.4:58250575-58250594 MS.gene05454:CDS 50.0%
AGAGTGAAACATCGTCGTCG+CGG - chr6.4:58250342-58250361 None:intergenic 50.0%
AGCCATTCACAGTGCTCCAA+TGG - chr6.4:58248808-58248827 None:intergenic 50.0%
AGGAGAACCGATGTCAGACT+GGG + chr6.4:58250558-58250577 MS.gene05454:CDS 50.0%
ATCCCTTGTAAGGCCAAGCT+AGG - chr6.4:58249376-58249395 None:intergenic 50.0%
ATGGTCAACTATCGGCGATC+AGG + chr6.4:58249399-58249418 MS.gene05454:CDS 50.0%
CACCAGCCAAGAAGAAACAC+CGG - chr6.4:58249939-58249958 None:intergenic 50.0%
CAGAGTTGGCACCCTCAAAT+GGG - chr6.4:58251154-58251173 None:intergenic 50.0%
CAGTGCTCCAATGGTGTGAT+GGG - chr6.4:58248799-58248818 None:intergenic 50.0%
CGTCGATCGGTTATGAAGCA+CGG + chr6.4:58247889-58247908 MS.gene05454:intron 50.0%
CTTGTAAGGCCAAGCTAGGA+GGG - chr6.4:58249372-58249391 None:intergenic 50.0%
GACATGTGTCGTGTCCAACA+CGG + chr6.4:58247944-58247963 MS.gene05454:intron 50.0%
GCTATATCACTGCTGCGTAG+CGG - chr6.4:58250833-58250852 None:intergenic 50.0%
GGAAGACGTTTCTGACGACA+AGG + chr6.4:58250494-58250513 MS.gene05454:CDS 50.0%
GTGAGAGTTGGAGTTGCCTT+TGG + chr6.4:58249875-58249894 MS.gene05454:CDS 50.0%
GTTCAGGCTCAGGAAATGGT+TGG + chr6.4:58252283-58252302 MS.gene05454:CDS 50.0%
TATGATGCACGGACACGACA+CGG - chr6.4:58248035-58248054 None:intergenic 50.0%
TGATCCACTTTGTTGCCTCC+TGG - chr6.4:58250460-58250479 None:intergenic 50.0%
TGGGCAATAGGACCAGATTC+CGG + chr6.4:58251077-58251096 MS.gene05454:CDS 50.0%
TGTCCGTGCATCATAGGTAC+TGG + chr6.4:58248040-58248059 MS.gene05454:intron 50.0%
TTGCCTCCTGGATGCTTTGA+AGG - chr6.4:58250448-58250467 None:intergenic 50.0%
! CGGATTAGGCATTGCTGATG+TGG + chr6.4:58253184-58253203 MS.gene05454:intron 50.0%
! CTAGGGTCTGGTTCCATTGA+GGG - chr6.4:58252604-58252623 None:intergenic 50.0%
! GGAGTTCCTTCAAAGCATCC+AGG + chr6.4:58250439-58250458 MS.gene05454:CDS 50.0%
! GTTCCTTCAAAGCATCCAGG+AGG + chr6.4:58250442-58250461 MS.gene05454:CDS 50.0%
! GTTGGAGTTGCCTTTGGAAG+CGG + chr6.4:58249881-58249900 MS.gene05454:CDS 50.0%
! TAGGGTCTGGTTCCATTGAG+GGG - chr6.4:58252603-58252622 None:intergenic 50.0%
! TCTAGGCACGTTTGAAGCTC+CGG + chr6.4:58249171-58249190 MS.gene05454:intron 50.0%
! TCTAGGGTCTGGTTCCATTG+AGG - chr6.4:58252605-58252624 None:intergenic 50.0%
! TGGCCTTACAAGGGATGAGA+TGG + chr6.4:58249380-58249399 MS.gene05454:CDS 50.0%
!! CACCATTGGAGCACTGTGAA+TGG + chr6.4:58248803-58248822 MS.gene05454:CDS 50.0%
!! CTCCTAGCTTGGCCTTACAA+GGG + chr6.4:58249371-58249390 MS.gene05454:CDS 50.0%
!! GAATTTGACGAGGTTGGTGG+CGG + chr6.4:58251620-58251639 MS.gene05454:CDS 50.0%
!! GACTGGTTGATGGATCAGTC+AGG + chr6.4:58251723-58251742 MS.gene05454:CDS 50.0%
AATGACCAGGGTTCAGGCTC+AGG + chr6.4:58252273-58252292 MS.gene05454:intron 55.0%
ACACGACACATGTCCGACGT+CGG - chr6.4:58247938-58247957 None:intergenic 55.0%
AGAAGAAACACCGGGCCACT+CGG - chr6.4:58249930-58249949 None:intergenic 55.0%
AGTCACTTCCAGCTACCGAG+TGG + chr6.4:58249912-58249931 MS.gene05454:CDS 55.0%
AGTGGCCCGGTGTTTCTTCT+TGG + chr6.4:58249930-58249949 MS.gene05454:CDS 55.0%
CAGGGTTCAGGCTCAGGAAA+TGG + chr6.4:58252279-58252298 MS.gene05454:intron 55.0%
CATTTCCTGAGCCTGAACCC+TGG - chr6.4:58252281-58252300 None:intergenic 55.0%
CCAGAGTTGGCACCCTCAAA+TGG - chr6.4:58251155-58251174 None:intergenic 55.0%
CCTTGTAAGGCCAAGCTAGG+AGG - chr6.4:58249373-58249392 None:intergenic 55.0%
GACTGGGTTCAACTCCCAGA+TGG + chr6.4:58250574-58250593 MS.gene05454:CDS 55.0%
GAGGAGAACCGATGTCAGAC+TGG + chr6.4:58250557-58250576 MS.gene05454:CDS 55.0%
GATTAGGTGTGTCCCGACGT+CGG + chr6.4:58247922-58247941 MS.gene05454:intron 55.0%
GCAACTCCAACTCTCACCTC+AGG - chr6.4:58249872-58249891 None:intergenic 55.0%
GCACGGACACTCTTCGGATT+AGG + chr6.4:58247906-58247925 MS.gene05454:intron 55.0%
GCATCCAGGAGGCAACAAAG+TGG + chr6.4:58250453-58250472 MS.gene05454:CDS 55.0%
GCCCAAACAGCAAGTGCAAG+AGG - chr6.4:58247578-58247597 None:intergenic 55.0%
GGCAATAGGACCAGATTCCG+GGG + chr6.4:58251079-58251098 MS.gene05454:CDS 55.0%
GGGCAATAGGACCAGATTCC+GGG + chr6.4:58251078-58251097 MS.gene05454:CDS 55.0%
GTGTCGTGTCCGTGCATCAT+AGG + chr6.4:58248034-58248053 MS.gene05454:intron 55.0%
GTGTTCGACAGTGACACCTG+TGG - chr6.4:58248548-58248567 None:intergenic 55.0%
TCAGCTCCTGAGGTGAGAGT+TGG + chr6.4:58249863-58249882 MS.gene05454:CDS 55.0%
TGGATCATGCCCTCCTAGCT+TGG + chr6.4:58249360-58249379 MS.gene05454:CDS 55.0%
! CCTCTCGAAAGAGTGCGTTC+CGG + chr6.4:58251758-58251777 MS.gene05454:CDS 55.0%
! GAGTTGCCTTTGGAAGCGGT+GGG + chr6.4:58249885-58249904 MS.gene05454:CDS 55.0%
!! ACTTGTGCCTCTGAGATCGG+CGG - chr6.4:58252346-58252365 None:intergenic 55.0%
!! ATTAACGGTGTCGGTGTGGC+AGG + chr6.4:58248007-58248026 MS.gene05454:intron 55.0%
!! CATCAGGGAACTCTAGGGTC+TGG - chr6.4:58252616-58252635 None:intergenic 55.0%
!! CCATTTGAGGGTGCCAACTC+TGG + chr6.4:58251152-58251171 MS.gene05454:CDS 55.0%
!! CCTCCTAGCTTGGCCTTACA+AGG + chr6.4:58249370-58249389 MS.gene05454:CDS 55.0%
!! TTAACGGTGTCGGTGTGGCA+GGG + chr6.4:58248008-58248027 MS.gene05454:intron 55.0%
CACGACACATGTCCGACGTC+GGG - chr6.4:58247937-58247956 None:intergenic 60.0%
CCGGAACGCACTCTTTCGAG+AGG - chr6.4:58251761-58251780 None:intergenic 60.0%
CTGACTCCCACCGCTTCCAA+AGG - chr6.4:58249894-58249913 None:intergenic 60.0%
CTTGTTGCCGCCGATCTCAG+AGG + chr6.4:58252336-58252355 MS.gene05454:CDS 60.0%
GCCCGGTGTTTCTTCTTGGC+TGG + chr6.4:58249934-58249953 MS.gene05454:CDS 60.0%
! GGAGTTGCCTTTGGAAGCGG+TGG + chr6.4:58249884-58249903 MS.gene05454:CDS 60.0%
!! TGAGGGTGCCAACTCTGGAG+AGG + chr6.4:58251157-58251176 MS.gene05454:CDS 60.0%
CTTCCAGCTACCGAGTGGCC+CGG + chr6.4:58249917-58249936 MS.gene05454:CDS 65.0%
ACACCGGGCCACTCGGTAGC+TGG - chr6.4:58249923-58249942 None:intergenic 70.0%
TCGTCGTCGCGGCTCCACCA+TGG - chr6.4:58250331-58250350 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 58247410 58253686 58247410 ID=MS.gene05454
chr6.4 mRNA 58247410 58253686 58247410 ID=MS.gene05454.t1;Parent=MS.gene05454
chr6.4 exon 58247410 58247607 58247410 ID=MS.gene05454.t1.exon1;Parent=MS.gene05454.t1
chr6.4 CDS 58247410 58247607 58247410 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58248642 58248716 58248642 ID=MS.gene05454.t1.exon2;Parent=MS.gene05454.t1
chr6.4 CDS 58248642 58248716 58248642 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58248796 58248903 58248796 ID=MS.gene05454.t1.exon3;Parent=MS.gene05454.t1
chr6.4 CDS 58248796 58248903 58248796 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58249176 58249208 58249176 ID=MS.gene05454.t1.exon4;Parent=MS.gene05454.t1
chr6.4 CDS 58249176 58249208 58249176 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58249331 58249420 58249331 ID=MS.gene05454.t1.exon5;Parent=MS.gene05454.t1
chr6.4 CDS 58249331 58249420 58249331 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58249605 58249730 58249605 ID=MS.gene05454.t1.exon6;Parent=MS.gene05454.t1
chr6.4 CDS 58249605 58249730 58249605 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58249812 58249955 58249812 ID=MS.gene05454.t1.exon7;Parent=MS.gene05454.t1
chr6.4 CDS 58249812 58249955 58249812 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58250297 58250710 58250297 ID=MS.gene05454.t1.exon8;Parent=MS.gene05454.t1
chr6.4 CDS 58250297 58250710 58250297 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58251044 58251178 58251044 ID=MS.gene05454.t1.exon9;Parent=MS.gene05454.t1
chr6.4 CDS 58251044 58251178 58251044 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58251263 58251484 58251263 ID=MS.gene05454.t1.exon10;Parent=MS.gene05454.t1
chr6.4 CDS 58251263 58251484 58251263 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58251563 58251835 58251563 ID=MS.gene05454.t1.exon11;Parent=MS.gene05454.t1
chr6.4 CDS 58251563 58251835 58251563 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58252282 58252413 58252282 ID=MS.gene05454.t1.exon12;Parent=MS.gene05454.t1
chr6.4 CDS 58252282 58252413 58252282 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58252581 58252883 58252581 ID=MS.gene05454.t1.exon13;Parent=MS.gene05454.t1
chr6.4 CDS 58252581 58252883 58252581 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
chr6.4 exon 58253453 58253686 58253453 ID=MS.gene05454.t1.exon14;Parent=MS.gene05454.t1
chr6.4 CDS 58253453 58253686 58253453 ID=cds.MS.gene05454.t1;Parent=MS.gene05454.t1
Gene Sequence

>MS.gene05454

ATGAGTAGAAAGAAAAGGGTATTTTCAATTGATAGTATTGAAGAGGTTGCTGTGGATTTCTTCAACTATGTTTTGCAGGAGAAGCCAAAGATTCCATTTTTCATTCCAGTTATTTTGATTGCTTGTGCTGTTGAAAAATGGGTCTTTTCTTTTTCTACTTGGGTTCCTCTTGCACTTGCTGTTTGGGCTACTATACAGGTTTTTGTCTTTTTTGACCTTACTCTATTAATCAATCATTGTTGTATTGTATTTATCTAAATATGTTTAATTTGGTGAGAATTGTCTTGGTTGGTCAATTTAGTTTTAAGTTAAAATGCATTCATTGTTTTTGGATTTTTGTTAAATTGGGGTAATTTCATGAAATTTATTTTCTTTGAGGAAATACTCAATTTGGTCACTGAAGTTGTAGGACTTGATCAATATCCTATATTGACATTATTGTAAAATGATTCATGAAATCCCAAAATGTTAATAAGATTCGTCGATCGGTTATGAAGCACGGACACTCTTCGGATTAGGTGTGTCCCGACGTCGGACATGTGTCGTGTCCAACACGGACACATACAATTACACTGAATTATGTGATTTTCTCAAATTATTAACGGTGTCGGTGTGGCAGGGTCCGTGTCGTGTCCGTGCATCATAGGTACTGGCATTAAGTTGGTAATGATGAGTTGCATTTAAAACTATTGACTAATGTTAGGGAATGTATTTGATAACATATTTAGACAGGGGGGCAAACTTGACTTACATTTTGACTATGTTAATCTGGTCTTGCAATTTCAGTGACCAAATTGGATTTTTATTTATTTCCCCTGTATATGTAATTTGTTAGCATAAAATTTTAATTACCTTGTAGATGTTCTTTATAAATTGTAGTGACCTGATTTTGGAACTCTTATTTACCAATTGGAGAAATAAGTGTTTAATTGAAGGTGAAAAAAACTAAGATCGAGGTAGTTTTGTGGTATCTGAGCTTGAGATCCCTATTCTCATGTACACCCTTTGGAATTTTGATATATATATATGTTCAGTTGTTTTCAAATTCAGTGTAATGAAGTTGTCTTCTTTATGACCATATAACCAAGCACAGACATTGGTAATAATTTAAGAACATGGAAGTGATTGAATGTAACCACAGGTGTCACTGTCGAACACCGACACACCTTCAATTTGAAACCTTGGTGCTATATATATGGAGTTAATGTGAGATGCTGTTGTTTAATTTTCAGTATGGGAGATACCAACGCAAACTACTTGTAGAGGACTTGGATAAGAAATGGAAGCGGATCATATTGAATAACTCGGTATCTTCTCTACCTATTTTTCCTATGAAATTGCCAATGTTCTTTATATGAAGTTGACTTCAATTTCTTGTTCATATAGCCCATCACACCATTGGAGCACTGTGAATGGCTCAATAAACTGTTGACAGAAATCTGGCCCAACTATTTTAACCCCAAGCTTTCATCAAGGTTATCAGCTATAGTTGAGGTGAAGTTTCACCGTTATTCTCCTTGTTTTTACTTGTTGTAGTTTTTTTTTTATTCAGCAAACAACACGGAAATTGCTTGTTAGCTTTTATTTGTTATTTTTGGAATCATAGTTATCAAATTGTGAATTGGAAGACTTATTTTTGGAATTGTGAAACAAATCTTTTTATGATGAGTCGAGATTCAGACCATGAATCCGAAGTCTTGATGCCACATTCTATTCAACATACTCTCAGAAGTGAACTAATTTATCTTTTCTTTTTGCGGTTCTAGGCACGTTTGAAGCTCCGGAAACCAAGATTTCTTGTAAGTAAAACTCATTTTTTTTCTATGACAGTTCTAATTAGTATTCGAAAACAGTTTGAACATTTCATAGATGATGAATGTTTGGTTAACATTTACTTAACTAGAGCACTCCTTTTGTGTAGGAAAGAGTTGAGTTGCAAGAGTTTTCACTTGGATCATGCCCTCCTAGCTTGGCCTTACAAGGGATGAGATGGTCAACTATCGGCGATCAGGTATTAGTTCTCTTCGCATTTCAAATATCACTAGTAAATATAATTTTTAGATGTTTAATTACAAATATATTCTTCTTCTTCTTCATGTAATCTATACTTTCTAGTGATATTGGTAGGGAGATTAAGAATTGATATATTACAAGATATTATATTTTGTTAAAGCATTCTGTTTTGTATTTTACAGCGAGTTATGCAACTTGGTTTTGATTGGGACACCCATGAAATGAGCATTTTGCTTCTTGCTAAGCTTGCGAAGCCATTGATGGGAACTGCACGAATCGTTATTAATAGTCTTCATATCAAGGGAGATGTATGTAGAGCAATATTCTTTCCATCGTTGTTCTTCTAACATAAGAAAAGCTATATAACTGTCTTCATATTCATTTTGCAGCTTATCTTTACACCGATTTTAGATGGAAGAGCACTTTTATATTCGTTTGTATCAGCTCCTGAGGTGAGAGTTGGAGTTGCCTTTGGAAGCGGTGGGAGTCAGTCACTTCCAGCTACCGAGTGGCCCGGTGTTTCTTCTTGGCTGGTGCGTCTCGACTAAGTTTAATATTATATTTGTAGGAACAAATTGCGTGCATTTATGTTGAGTCTCCTAAACTACCTCATTCTTTTACTTATGGCGTTTTATACACATATACTACACTTTTGTTCAGCTGCAACTTTAGAAATCATTGTGCATTGCAATTGTTGAAGCTGATTCTAATGATTCAATGGATAATTTCATTTATCGAGTTAGGAACAGTTGTTTATGCAAATATCAATTAGATGTTTCAGCCTTATAAGTTCATTGTCTTGGCTAATTTCTGCTAACTTTTAAATATTTTATTTCTTTTTTGTTGTTAACTTTCTACTTTTTCTGCTATGTAGGAAAAACTTTTCACGGACACTTTGGTTAAAACCATGGTGGAGCCGCGACGACGATGTTTCACTCTGCCTGCTGTTGATTTAAGAAAAAAGGCGGTTGGAGGGATCATATATGTTAGAGTGATTTCAGCCAATAAACTTTCTAGGAGTTCCTTCAAAGCATCCAGGAGGCAACAAAGTGGATCAACCAATGGTTCTTCGGAAGACGTTTCTGACGACAAGGACCTACATACATTTGTAGAGGTAGAAATTGAGGAATTGACGAGGAGAACCGATGTCAGACTGGGTTCAACTCCCAGATGGGATGCACCGTTTAATATGGTTTTGCATGATAATACAGGAACTCTTCGTTTTAATCTTTTCGAGTGTATTCCCAACAATGTGAAGTGTGACTATCTAGGAAGTTGTGAAATTAAGGTACTTCCTTTTGATATTCTACTTTTGAGCTAGCAACAAAAGAATATCAATTAGTAAACACTGTCTTTAATTCAGTGTTGTGAATCACAAATCGCAGAAAATAGCGGTTTGGTCAAATTCCGCTACGCAGCAGTGATATAGCATTGCGCTATAGATAGCATATCGCGAAACAATAGCGTTTTGTTCAGATTCCGCTATGCTATAGTGTTATAGCTATTATAGCTGCTATTTGACAACACTATCTTCATTCAGGAATTTCTTTCCAGATTTTATTTTCAGCGAGGACACCATGTTTTTATACTACGATAAGTTAATGTTGATGTCTTTGTGCAGCTGAGGCACGTTGAAGATGACTCAACAATAATGTGGGCAATAGGACCAGATTCCGGGGTTATAGCAAAGCAAGCACAATTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGAGGGTGCCAACTCTGGAGAGGTACTATATTTTACCTTTGAGTGAAGAAAAAATTGGTATGGAATCACACACTCATTCATTTTACCTCTTCTCTTCATATTACAGTTGAAGGTGAGCATTGTAGTGAAAGAGTGGCAATTTTCTGATGGAACACATAGCTTGAACAATCTCCGAAACAACTCTCAGCAGTCACTTAACGGATCATCAAATATTCAGTTAAGAACCGGAAAGAAACTTAAAATAACTGTTGTAGAAGGAAAGGATCTTGCTGCTGCAAAAGAAAAATCTGGAAAATTTGATCCATACATTAAATTGCAATATGGAAAGGTAAGTAACACTGGTTACGTCACTCTTCATTGTACGAATGTCTGCTTTATCTGATTCTGTTCTTCATAATATTTTCAGGTTATGCAGAAAACAAAGACTTCTCATACTCCAAATCCTATTTGGAATCAGACGATTGAATTTGACGAGGTTGGTGGCGGCGAATACTTAAAACTAAAAGTATTTACCGAGGAACTTTTCGGAGATGAAAACATTGGTAGTGCCCAAGTAAATTTGGAAGGACTGGTTGATGGATCAGTCAGGGATGTATGGATTCCTCTCGAAAGAGTGCGTTCCGGAGAAATCAGACTTAAAATAGAAGCCATAAAAGTGGATGACCAAGAAGGATCAACGGTGTGTTTCTTCAGTCAGAAATTATTGATTCTTTTATTTATTTAGGCTCTATTTGGATAAACAGCTTATTATACGCTTATAACATAAGCACATATCATATAAGTGCTTATCATATGAATAAGCTGTTTCTATGACAAGAGATAAAAGGAAGTCAATTTTTTTTCATAAGCTACTCCTAAGAGCTTATGGAAATAAGTTGAAAACAACTTATGGACATGTCATTAGCTGTTTAAATAAGCTCTCCAAAACAGTCTCAAAGGGCTTATGCTTGTAGACAAGCTCAAATAAGCTAATCCAAATTGGCCTTTGGTCACAAGATGAAAAAATGATGCTAAAGAATAGAGCATATTTTTGCATATCATCTATCACTTTTACTTACTCTATTATGGATTTTTAACTTCTTGAATGTTGATTCTGACATGATTCACTTCTTCGATAATGACCAGGGTTCAGGCTCAGGAAATGGTTGGATAGAACTTGTTCTGATTGAAGGGAGGGATCTTGTTGCCGCCGATCTCAGAGGCACAAGTGATCCATATGTTAGGGTACACTATGGAAACTTCAAGAAAAGAACAAAGGTTGGTATTAAACCAAATTTAGATACTATGATAGATGATAGATGCTTTCAATATTATTTTTGTATTAATAAGACTTTACGAGTCAAGTGTATGGAGATTCCAGGAGTTTTCATAGATTCTCGAGTTCAATAACCTGGCTTAATACTAGATGTGGCATTATTTGGCAGGTTATATACAAAACTCTAACCCCTCAATGGAACCAGACCCTAGAGTTCCCTGATGATGGAAGTCCTTTGATGCTTTATGTGAAGGACCATAATGCGTTACTACCTACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGGCTGATAAGTGGATACCTCTTCAAGGTGTGAAAAAGGGCGAAATTCACATTCAAATTACTAGAAAAGTTCCAGAAATGCAGAAGAGGCAAAGTATGGACTCTGAACCTTCTTTGAGTAAATTACACCAAATTCCTAGCCAGGTGAGATTTTCCTTAATGTCCAAAGACACTTCTATTTATATTCTGTGTTGTTATTCAGTTCAAAGGATGATGTATTGTTGATTATCTCAAAAGCAATGAACATACTTTAATACGTGATCTTCATTATTTTTAGGCAAAATTGCTCCTGCAGTCCAATAAGTTAGTTTGTTGTAATAGATTAGCCTTTAAGTTTCTTTTTCTTTTCCTAGCTAGGTCTTTTTAGCCTCCAAATGTGCACATTGTTGTGTTTTTTAAAACTTTCATTACAAAAACGTTTGCGTGGAAGTTACTGGTATGTCACGGATTAGGCATTGCTGATGTGGCAAGTTTAACTCATTTCTACATAAGCATCATCTAATCCCATCAGACCAGTAGCCATATAAGTGATTTTTATTGGAATTTGTAAAAAAGTACAGTGGTATTGGTGCGCACATTTTGAGGCTTAAAGAACTTAAATGTTAGAATAAAATATCTCGAAGGGCTGAAAGAGCAATTTTGTATTTTTTTTCCCTATCGTTTTCATGTTGTGCTGTTACGCTAACACATCATGTTATATTGAAATTTATCAGATAAAACAGATGATGATCAAGTTTAGGTCTCAAATCGAAGATGGAAATCTTGAAGGACTCACTACAACCTTGAGTGAGCTAGAAACTCTAGAGGATACACAAGAAGGATATGTAGCTCAGCTAGAGACAGAACAAATGCTTCTTCTCAGCAAGATAAAGGAACTTGGCCAAGAGATCATTAATTCTTCTCCTTCTCCTTCCTTAAGCAGAAGACATTCTGAAAGTGTCAACTAA

Protein sequence

>MS.gene05454.t1

MSRKKRVFSIDSIEEVAVDFFNYVLQEKPKIPFFIPVILIACAVEKWVFSFSTWVPLALAVWATIQYGRYQRKLLVEDLDKKWKRIILNNSPITPLEHCEWLNKLLTEIWPNYFNPKLSSRLSAIVEARLKLRKPRFLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGFDWDTHEMSILLLAKLAKPLMGTARIVINSLHIKGDLIFTPILDGRALLYSFVSAPEVRVGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYVRVISANKLSRSSFKASRRQQSGSTNGSSEDVSDDKDLHTFVEVEIEELTRRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLFECIPNNVKCDYLGSCEIKLRHVEDDSTIMWAIGPDSGVIAKQAQFCGDEIEMVVPFEGANSGELKVSIVVKEWQFSDGTHSLNNLRNNSQQSLNGSSNIQLRTGKKLKITVVEGKDLAAAKEKSGKFDPYIKLQYGKVMQKTKTSHTPNPIWNQTIEFDEVGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEIRLKIEAIKVDDQEGSTGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYKTLTPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKKGEIHIQITRKVPEMQKRQSMDSEPSLSKLHQIPSQIKQMMIKFRSQIEDGNLEGLTTTLSELETLEDTQEGYVAQLETEQMLLLSKIKELGQEIINSSPSPSLSRRHSESVN