AlfalfaGEDB | MS.gene061918

M. sativa cultivar XinJiangDaYe / MS.gene061918

KEGG: K18732
GO: -
PFAM: PF18592.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061918.t1	XP_003625539.1	92.9	196	14	0	1	196	1	196	9.00E-26	127.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061918.t1	G7L0P2	92.9	196	14	0	1	196	1	196	6.5e-26	127.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052176	MS.gene061918	-0.83625	1.04E-56	-1.69E-46
MS.gene052309	MS.gene061918	0.863489	2.40E-64	-1.69E-46
MS.gene052358	MS.gene061918	0.881897	1.64E-70	-1.69E-46
MS.gene052965	MS.gene061918	0.803416	3.52E-49	-1.69E-46
MS.gene053006	MS.gene061918	-0.807384	5.19E-50	-1.69E-46
MS.gene05548	MS.gene061918	-0.837862	4.05E-57	-1.69E-46
MS.gene055555	MS.gene061918	-0.800531	1.38E-48	-1.69E-46
MS.gene056969	MS.gene061918	0.837795	4.21E-57	-1.69E-46
MS.gene057079	MS.gene061918	-0.836164	1.10E-56	-1.69E-46
MS.gene05954	MS.gene061918	-0.806361	8.54E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061918.t1	MTR_7g100260	97.449	196	5	0	1	196	1	196	3.00e-135	376

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061918.t1	AT5G02770	59.712	139	47	5	62	192	76	213	7.79e-42	140

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Find 67 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGCAAGAGCACTT+AGG	0.567875	7.2:-11845826	MS.gene061918:intron
AACATCGGAAAGTGGAGCGT+CGG	0.603371	7.2:+11846292	None:intergenic
AACGGTAATACCGAAACGTT+CGG	0.521256	7.2:+11846250	None:intergenic
AATGATAAGGCGGCTGTTGC+TGG	0.366834	7.2:-11845556	MS.gene061918:intron
AATTGGATCTGACTCTGAGT+GGG	0.499779	7.2:+11846376	None:intergenic
ACCGCCGCAACCACCACCAA+CGG	0.506471	7.2:-11846452	MS.gene061918:CDS
AGAAGAAAGCTCGTCTTGCT+AGG	0.504439	7.2:-11845892	MS.gene061918:CDS
AGACGAGGATCTGAAGAGGA+AGG	0.587008	7.2:-11846056	MS.gene061918:CDS
AGAGGAAGGCTAGGGCAGAG+AGG	0.678008	7.2:-11846042	MS.gene061918:intron
AGCGTAATTCACGAGCCGAA+AGG	0.578186	7.2:-11846208	MS.gene061918:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTATGATTGGTATCTTATT+AGG	-	chr7.2:11846249-11846268	MS.gene061918:CDS	30.0%
GATGATGCATTTGAAAACCT+GGG	+	chr7.2:11846292-11846311	None:intergenic	35.0%
TTATTGCTTTCTTTGTTCCC+AGG	-	chr7.2:11846272-11846291	MS.gene061918:CDS	35.0%
TTTATCTTCTTCAGCAGGAT+CGG	+	chr7.2:11846160-11846179	None:intergenic	35.0%
TTTGTCTCAAGTCAATTCTG+AGG	-	chr7.2:11846318-11846337	MS.gene061918:CDS	35.0%
AAAAAGACGAGGATCTGAAG+AGG	-	chr7.2:11845944-11845963	MS.gene061918:intron	40.0%
AACGGTAATACCGAAACGTT+CGG	+	chr7.2:11845757-11845776	None:intergenic	40.0%
AATTGGATCTGACTCTGAGT+GGG	+	chr7.2:11845631-11845650	None:intergenic	40.0%
TCTGTATTACAAGGACCTGA+GGG	-	chr7.2:11845919-11845938	MS.gene061918:CDS	40.0%
TTCTTCTGAACATCGGAAAG+TGG	+	chr7.2:11845723-11845742	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	11845534	11846492	11845534	ID=MS.gene061918
chr7.2	mRNA	11845534	11846492	11845534	ID=MS.gene061918.t1;Parent=MS.gene061918
chr7.2	exon	11846209	11846492	11846209	ID=MS.gene061918.t1.exon1;Parent=MS.gene061918.t1
chr7.2	CDS	11846209	11846492	11846209	ID=cds.MS.gene061918.t1;Parent=MS.gene061918.t1
chr7.2	exon	11846043	11846120	11846043	ID=MS.gene061918.t1.exon2;Parent=MS.gene061918.t1
chr7.2	CDS	11846043	11846120	11846043	ID=cds.MS.gene061918.t1;Parent=MS.gene061918.t1
chr7.2	exon	11845827	11845958	11845827	ID=MS.gene061918.t1.exon3;Parent=MS.gene061918.t1
chr7.2	CDS	11845827	11845958	11845827	ID=cds.MS.gene061918.t1;Parent=MS.gene061918.t1
chr7.2	exon	11845672	11845732	11845672	ID=MS.gene061918.t1.exon4;Parent=MS.gene061918.t1
chr7.2	CDS	11845672	11845732	11845672	ID=cds.MS.gene061918.t1;Parent=MS.gene061918.t1
chr7.2	exon	11845534	11845569	11845534	ID=MS.gene061918.t1.exon5;Parent=MS.gene061918.t1
chr7.2	CDS	11845534	11845569	11845534	ID=cds.MS.gene061918.t1;Parent=MS.gene061918.t1

Gene Sequence

>MS.gene061918

ATGGCAACCCCTTCCGCCACCGCCGCAACCACCACCAACGGAAACCCAACTGAGGATAACCCTATCGAAACCCTAGACCCCACCTCACCCAAACCCCACTCAGAGTCAGATCCAATTCCCGCCGACAAAGATGCTGACGACGACAAATCCAAAGAGACGACTCCGGCTGAACCTGAAACCGACGCTCCACTTTCCGATGTTCAGAAGAAGATGCGCCGCGCCGAACGTTTCGGTATTACCGTTAAGTTATCTGAGAAAGAAAAGCGTAATTCACGAGCCGAAAGGTATAATCTTTATCTGAATTTAGGGTTCGAGTCAATTTTCTTTTGTTTTGAACAAAATTATTGAAATTAGGGTTTGTTTTGAATTTAGGTTTGGCACTGCGTCTGTATTACAAGGACCTGAGGGAAAAAAAGACGAGGATCTGAAGAGGAAGGCTAGGGCAGAGAGGTGTTCAATTTTTTCCCTTTTTATTTCGTAACCCTAAAATTGAGAATTGAAATGAAGACAGTTACTGATTATGATTTTTTGCAGGTTTGGAATGCCTACTCCTACTTCAGCTGCTGATGATGATGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTGCTGCACCGGGTTCCAAGACCGATCCTGCTGAAGAAGATAAAAAGAAAGCAAGAGCACTTAGGTGTGTGTTTCTTGCTAATATCTGTTTCTCTCATTTCATATATGAATTGCGTATGATTGGTATCTTATTAGGTTATTGCTTTCTTTGTTCCCAGGTTTTCAAATGCATCATCAAAACCTTTGTCTCAAGTCAATTCTGAGGCTAACATTGAGCCTGTAAGGCCCTTTCGCCACCTCCAATACCTTTTGTTATTAGAAAGATTATAATTTTTTGTTTGTATGTTTGATTGTTATGTTTTTTTTTTTTTGAATGATAAGGCGGCTGTTGCTGGCAATGCTGGAGGAGGGACTTGA

Protein sequence

>MS.gene061918.t1

MATPSATAATTTNGNPTEDNPIETLDPTSPKPHSESDPIPADKDADDDKSKETTPAEPETDAPLSDVQKKMRRAERFGITVKLSEKEKRNSRAERFGTASVLQGPEGKKDEDLKRKARAERFGMPTPTSAADDDAKKKARLARFAAPGSKTDPAEEDKKKARALRFSNASSKPLSQVNSEANIEPAAVAGNAGGGT