AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061919

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061919.t1 MTR_7g100240 98.108 370 7 0 1 370 1 370 0.0 756
MS.gene061919.t1 MTR_1g067210 77.005 374 81 1 1 369 1 374 0.0 596
MS.gene061919.t1 MTR_1g116260 66.954 348 111 2 5 348 13 360 7.09e-175 491
MS.gene061919.t1 MTR_7g081020 66.667 351 116 1 16 365 21 371 3.49e-168 475
MS.gene061919.t1 MTR_1g112840 63.115 366 131 2 4 365 11 376 1.12e-167 474
MS.gene061919.t1 MTR_8g074930 62.644 348 129 1 17 363 25 372 3.32e-164 465
MS.gene061919.t1 MTR_2g033910 56.438 365 145 3 5 363 12 368 2.45e-150 429
MS.gene061919.t1 MTR_7g081020 67.491 283 92 0 16 298 21 303 3.22e-136 391
MS.gene061919.t1 MTR_0015s0140 54.268 328 141 3 22 349 38 356 6.50e-127 370
MS.gene061919.t1 MTR_1g106855 53.776 331 143 2 18 346 16 338 3.94e-123 360
MS.gene061919.t1 MTR_8g074930 64.231 260 92 1 105 363 1 260 7.71e-122 353
MS.gene061919.t1 MTR_0015s0140 55.823 249 109 1 101 349 55 302 1.24e-98 296
MS.gene061919.t1 MTR_3g032660 46.154 325 158 6 29 346 33 347 1.32e-95 291
MS.gene061919.t1 MTR_3g032700 46.769 325 156 7 29 346 33 347 2.39e-95 291
MS.gene061919.t1 MTR_1g106855 50.709 282 129 2 18 297 16 289 7.01e-94 283
MS.gene061919.t1 MTR_7g090530 46.462 325 157 6 29 346 34 348 9.72e-91 280
MS.gene061919.t1 MTR_7g090550 44.848 330 165 6 29 350 35 355 2.45e-88 273
MS.gene061919.t1 MTR_3g032590 45.149 268 127 5 85 346 100 353 1.16e-70 228
MS.gene061919.t1 MTR_4g113480 35.952 331 193 6 22 348 34 349 2.40e-61 206
MS.gene061919.t1 MTR_4g113345 33.333 351 190 13 3 348 1 312 1.75e-44 156
MS.gene061919.t1 MTR_7g060770 29.530 298 181 6 71 349 263 550 4.91e-39 146
MS.gene061919.t1 MTR_4g119830 29.483 329 173 7 71 345 164 487 1.55e-38 144
MS.gene061919.t1 MTR_4g076560 30.435 299 176 7 70 349 201 486 3.57e-37 140
MS.gene061919.t1 MTR_7g090540 41.117 197 93 5 159 350 7 185 3.01e-35 130
MS.gene061919.t1 MTR_4g063905 30.466 279 152 6 108 349 426 699 3.49e-34 134
MS.gene061919.t1 MTR_4g113210 31.716 268 149 9 21 279 15 257 3.18e-33 124
MS.gene061919.t1 MTR_1g085530 28.904 301 149 5 109 349 592 887 4.04e-33 131
MS.gene061919.t1 MTR_4g098650 29.773 309 158 6 102 356 475 778 1.17e-32 129
MS.gene061919.t1 MTR_3g464700 32.883 222 107 5 71 291 118 298 1.12e-31 122
MS.gene061919.t1 MTR_5g071550 34.529 223 104 6 70 291 153 334 1.24e-31 123
MS.gene061919.t1 MTR_3g464650 29.964 277 138 7 70 345 93 314 1.93e-30 119
MS.gene061919.t1 MTR_5g071550 33.184 223 105 7 70 289 153 334 7.13e-28 112
MS.gene061919.t1 MTR_1g115570 28.387 310 149 9 47 353 106 345 3.05e-26 107
MS.gene061919.t1 MTR_2g078760 30.935 278 127 10 71 345 38 253 2.44e-24 100
MS.gene061919.t1 MTR_2g078760 30.935 278 127 10 71 345 117 332 5.29e-24 101
MS.gene061919.t1 MTR_5g063940 31.348 319 143 13 31 343 31 279 9.25e-24 99.8
MS.gene061919.t1 MTR_1g014640 30.258 271 139 9 47 313 88 312 9.66e-24 100
MS.gene061919.t1 MTR_1g013400 30.258 271 139 9 47 313 88 312 9.66e-24 100
MS.gene061919.t1 MTR_5g063940 31.944 288 128 11 62 343 7 232 1.16e-23 98.2
MS.gene061919.t1 MTR_4g094208 30.526 285 145 12 35 314 30 266 1.51e-23 99.0
MS.gene061919.t1 MTR_3g091060 30.435 230 113 6 66 291 120 306 1.65e-23 100
MS.gene061919.t1 MTR_5g024340 29.371 286 129 9 71 346 124 346 3.28e-23 100
MS.gene061919.t1 MTR_3g105730 28.667 300 145 11 47 343 45 278 3.58e-23 98.6
MS.gene061919.t1 MTR_3g105730 28.667 300 145 11 47 343 23 256 3.76e-23 97.8
MS.gene061919.t1 MTR_2g008850 29.433 282 136 9 64 343 12 232 2.89e-22 94.7
MS.gene061919.t1 MTR_4g125810 29.688 256 121 7 54 291 231 445 9.56e-22 97.1
MS.gene061919.t1 MTR_2g008850 29.433 282 136 9 64 343 58 278 1.34e-21 93.6
MS.gene061919.t1 MTR_4g123080 31.186 295 141 14 62 347 87 328 3.29e-21 94.0
MS.gene061919.t1 MTR_4g123080 31.186 295 141 14 62 347 105 346 3.96e-21 94.0
MS.gene061919.t1 MTR_3g074610 29.114 316 154 13 31 343 31 279 1.08e-20 91.3
MS.gene061919.t1 MTR_8g463130 27.500 320 163 12 30 346 29 282 1.50e-20 90.9
MS.gene061919.t1 MTR_8g463130 27.500 320 163 12 30 346 1 254 1.61e-20 90.1
MS.gene061919.t1 MTR_2g033000 30.175 285 140 9 70 346 99 332 1.90e-20 92.0
MS.gene061919.t1 MTR_1g050520 29.181 281 141 10 72 347 419 646 8.98e-20 91.3
MS.gene061919.t1 MTR_3g107880 28.622 283 141 11 66 343 59 285 1.75e-19 88.6
MS.gene061919.t1 MTR_3g107880 28.421 285 143 11 66 345 116 344 3.40e-19 88.6
MS.gene061919.t1 MTR_3g107880 28.421 285 143 11 66 345 117 345 3.49e-19 88.6
MS.gene061919.t1 MTR_3g104710 28.525 305 159 12 60 345 275 539 3.69e-19 89.4
MS.gene061919.t1 MTR_2g078760 30.841 214 103 8 71 281 117 288 1.40e-18 85.5
MS.gene061919.t1 MTR_1g028300 28.037 321 175 11 35 349 113 383 1.53e-18 86.7
MS.gene061919.t1 MTR_5g080680 28.017 232 128 5 68 292 129 328 2.44e-18 85.9
MS.gene061919.t1 MTR_7g025640 30.698 215 110 6 135 345 7 186 3.73e-18 82.4
MS.gene061919.t1 MTR_3g068200 25.338 296 157 10 71 345 123 375 8.58e-18 84.3
MS.gene061919.t1 MTR_4g094542 28.740 254 110 11 71 308 150 348 1.44e-17 83.6
MS.gene061919.t1 MTR_1g015110 27.419 310 149 12 67 348 285 546 3.06e-17 83.6
MS.gene061919.t1 MTR_1g086350 26.573 286 149 11 70 346 101 334 2.10e-16 80.1
MS.gene061919.t1 MTR_1g086350 26.573 286 149 11 70 346 117 350 2.11e-16 80.1
MS.gene061919.t1 MTR_7g093240 35.333 150 61 5 150 297 4 119 2.60e-16 75.1
MS.gene061919.t1 MTR_3g105880 25.263 285 139 10 52 292 33 287 3.17e-16 79.0
MS.gene061919.t1 MTR_3g105880 25.263 285 139 10 52 292 33 287 3.85e-16 79.3
MS.gene061919.t1 MTR_2g435550 29.474 285 145 12 71 326 78 335 1.35e-15 77.4
MS.gene061919.t1 MTR_2g435550 29.474 285 145 12 71 326 92 349 1.45e-15 77.4
MS.gene061919.t1 MTR_1g014190 26.217 267 123 10 70 292 51 287 1.80e-15 77.4
MS.gene061919.t1 MTR_1g086350 26.950 282 145 12 74 346 19 248 2.32e-15 76.3
MS.gene061919.t1 MTR_1g014190 25.468 267 125 9 70 292 89 325 4.24e-15 76.3
MS.gene061919.t1 MTR_7g021530 32.704 159 89 5 152 309 245 386 8.76e-15 75.9
MS.gene061919.t1 MTR_7g021530 32.704 159 89 5 152 309 204 345 8.88e-15 75.5
MS.gene061919.t1 MTR_7g021530 32.704 159 89 5 152 309 154 295 1.16e-14 74.7
MS.gene061919.t1 MTR_8g017240 28.682 258 142 9 71 310 86 319 1.33e-14 74.7
MS.gene061919.t1 MTR_2g435550 29.368 269 135 11 71 311 92 333 1.46e-14 74.7
MS.gene061919.t1 MTR_5g071550 34.646 127 66 4 71 196 154 264 4.42e-14 72.4
MS.gene061919.t1 MTR_4g013295 26.462 325 159 14 63 351 69 349 1.22e-13 71.6
MS.gene061919.t1 MTR_3g491830 26.087 253 139 10 70 297 88 317 1.92e-12 68.2
MS.gene061919.t1 MTR_5g009370 24.055 291 166 7 71 349 87 334 1.98e-12 67.8
MS.gene061919.t1 MTR_1g016620 26.792 265 137 10 56 292 53 288 6.81e-12 66.2
MS.gene061919.t1 MTR_1g083690 27.817 284 151 13 71 326 89 346 6.85e-12 66.6
MS.gene061919.t1 MTR_4g120410 30.500 200 103 8 138 326 174 348 7.33e-12 66.2
MS.gene061919.t1 MTR_4g094208 30.058 173 95 8 35 204 30 179 7.43e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061919.t1 AT3G12620 66.304 368 121 2 1 365 10 377 0.0 511
MS.gene061919.t1 AT3G12620 66.304 368 121 2 1 365 10 377 0.0 511
MS.gene061919.t1 AT3G55050 64.481 366 121 2 5 365 13 374 9.84e-178 499
MS.gene061919.t1 AT3G55050 64.481 366 121 2 5 365 13 374 9.84e-178 499
MS.gene061919.t1 AT3G51370 65.706 347 117 1 19 365 27 371 1.96e-173 488
MS.gene061919.t1 AT3G51370 65.706 347 117 1 19 365 27 371 1.96e-173 488
MS.gene061919.t1 AT5G66080 64.571 350 122 2 18 365 28 377 2.70e-168 475
MS.gene061919.t1 AT4G38520 61.891 349 132 1 16 363 26 374 3.03e-165 468
MS.gene061919.t1 AT4G38520 61.891 349 132 1 16 363 26 374 3.03e-165 468
MS.gene061919.t1 AT5G02760 62.735 373 131 4 1 370 1 368 1.39e-161 457
MS.gene061919.t1 AT3G17090 56.973 337 133 4 24 358 45 371 2.33e-135 391
MS.gene061919.t1 AT3G51370 63.768 276 98 1 90 365 13 286 4.77e-131 377
MS.gene061919.t1 AT5G66080 65.056 269 93 1 98 365 5 273 3.05e-127 367
MS.gene061919.t1 AT4G33920 51.576 349 150 3 22 359 20 360 5.57e-124 362
MS.gene061919.t1 AT5G06750 50.144 347 162 2 24 367 43 381 8.10e-120 352
MS.gene061919.t1 AT5G06750 50.144 347 162 2 24 367 43 381 8.10e-120 352
MS.gene061919.t1 AT3G17090 55.435 276 111 4 24 297 45 310 3.89e-106 315
MS.gene061919.t1 AT4G33920 53.114 273 117 2 98 359 5 277 2.93e-98 294
MS.gene061919.t1 AT5G06750 52.222 270 126 1 101 367 30 299 5.65e-94 283
MS.gene061919.t1 AT4G33920 54.251 247 102 2 124 359 1 247 9.68e-91 273
MS.gene061919.t1 AT3G16560 31.310 313 170 7 71 345 175 480 2.30e-42 154
MS.gene061919.t1 AT3G16560 31.310 313 170 7 71 345 175 480 2.30e-42 154
MS.gene061919.t1 AT3G16560 31.310 313 170 7 71 345 175 480 2.30e-42 154
MS.gene061919.t1 AT1G07160 34.164 281 130 7 67 345 149 376 8.91e-38 140
MS.gene061919.t1 AT5G02400 31.884 276 149 5 108 349 399 669 4.39e-37 142
MS.gene061919.t1 AT2G46920 28.713 303 150 5 108 349 542 839 2.09e-35 137
MS.gene061919.t1 AT2G46920 28.713 303 150 5 108 349 542 839 2.09e-35 137
MS.gene061919.t1 AT2G46920 28.713 303 150 5 108 349 542 839 2.09e-35 137
MS.gene061919.t1 AT2G46920 28.713 303 150 5 108 349 542 839 2.09e-35 137
MS.gene061919.t1 AT3G09400 30.037 273 151 6 108 349 382 645 1.10e-34 135
MS.gene061919.t1 AT1G07630 29.032 279 156 5 108 349 384 657 1.80e-34 134
MS.gene061919.t1 AT2G28890 29.391 279 155 5 108 349 376 649 2.25e-34 134
MS.gene061919.t1 AT2G40180 31.683 303 136 10 58 345 139 385 5.16e-34 130
MS.gene061919.t1 AT3G16560 30.742 283 151 7 71 315 175 450 2.67e-33 129
MS.gene061919.t1 AT2G35350 28.383 303 161 6 102 358 486 778 6.37e-33 130
MS.gene061919.t1 AT2G30020 32.975 279 129 9 70 345 169 392 3.53e-30 119
MS.gene061919.t1 AT1G67820 34.222 225 105 5 70 292 114 297 1.20e-28 115
MS.gene061919.t1 AT1G67820 34.222 225 105 5 70 292 150 333 1.72e-28 115
MS.gene061919.t1 AT3G09400 28.870 239 130 6 108 315 382 611 1.87e-25 108
MS.gene061919.t1 AT2G33700 32.877 292 117 12 69 347 121 346 2.03e-25 106
MS.gene061919.t1 AT4G31750 29.779 272 140 9 47 313 44 269 1.41e-24 102
MS.gene061919.t1 AT4G31750 29.779 272 140 9 47 313 44 269 1.82e-24 102
MS.gene061919.t1 AT4G31750 29.779 272 140 9 47 313 44 269 1.82e-24 102
MS.gene061919.t1 AT3G51470 28.763 299 137 11 62 348 52 286 3.18e-24 101
MS.gene061919.t1 AT3G51470 28.763 299 137 11 62 348 96 330 6.69e-24 101
MS.gene061919.t1 AT1G43900 32.526 289 121 11 62 343 145 366 1.14e-23 101
MS.gene061919.t1 AT5G10740 30.208 288 147 11 31 313 30 268 2.01e-23 100
MS.gene061919.t1 AT5G10740 30.208 288 147 11 31 313 30 268 2.01e-23 100
MS.gene061919.t1 AT1G78200 29.073 313 153 12 35 343 33 280 1.13e-22 96.7
MS.gene061919.t1 AT1G78200 29.073 313 153 12 35 343 33 280 1.13e-22 96.7
MS.gene061919.t1 AT1G78200 29.073 313 153 12 35 343 33 280 1.13e-22 96.7
MS.gene061919.t1 AT5G53140 26.421 299 147 9 71 359 132 367 7.99e-22 96.7
MS.gene061919.t1 AT5G53140 26.421 299 147 9 71 359 132 367 7.99e-22 96.7
MS.gene061919.t1 AT2G25620 28.165 316 165 13 43 348 96 359 8.52e-22 96.3
MS.gene061919.t1 AT2G25620 28.165 316 165 13 43 348 96 359 8.52e-22 96.3
MS.gene061919.t1 AT1G78200 28.671 286 140 10 62 343 10 235 1.12e-21 93.2
MS.gene061919.t1 AT1G78200 28.671 286 140 10 62 343 10 235 1.12e-21 93.2
MS.gene061919.t1 AT4G28400 29.921 254 130 9 66 314 40 250 2.88e-21 92.4
MS.gene061919.t1 AT5G24940 29.474 285 147 11 31 310 30 265 4.50e-21 94.7
MS.gene061919.t1 AT4G28400 29.021 286 134 10 66 346 62 283 5.02e-21 92.0
MS.gene061919.t1 AT2G20630 28.881 277 130 10 71 343 63 276 1.66e-20 90.5
MS.gene061919.t1 AT2G20630 28.623 276 130 10 71 342 63 275 7.68e-20 89.0
MS.gene061919.t1 AT1G07430 29.130 230 123 5 71 292 157 354 7.76e-20 90.9
MS.gene061919.t1 AT1G34750 28.846 312 151 12 38 345 37 281 1.68e-19 87.8
MS.gene061919.t1 AT1G34750 28.846 312 151 12 38 345 37 281 1.68e-19 87.8
MS.gene061919.t1 AT1G34750 28.846 312 151 12 38 345 37 281 1.68e-19 87.8
MS.gene061919.t1 AT2G29380 28.904 301 161 10 57 345 101 360 1.95e-19 89.0
MS.gene061919.t1 AT1G48040 29.794 339 157 14 39 359 81 356 4.89e-19 88.2
MS.gene061919.t1 AT4G08260 27.698 278 112 10 70 345 18 208 6.20e-19 84.7
MS.gene061919.t1 AT3G17250 28.205 273 141 10 62 314 142 379 6.36e-19 88.2
MS.gene061919.t1 AT1G22280 28.037 321 161 13 29 343 28 284 8.97e-19 85.9
MS.gene061919.t1 AT4G26080 26.398 322 183 10 54 361 153 434 1.33e-18 87.0
MS.gene061919.t1 AT3G15260 29.964 277 127 11 71 343 73 286 2.17e-18 84.7
MS.gene061919.t1 AT3G15260 29.964 277 127 11 71 343 73 286 2.17e-18 84.7
MS.gene061919.t1 AT3G62260 29.839 248 135 9 71 309 27 244 3.17e-18 84.3
MS.gene061919.t1 AT5G51760 27.500 240 123 8 71 291 114 321 3.46e-18 85.5
MS.gene061919.t1 AT1G22280 28.165 316 161 12 29 343 28 278 3.58e-18 84.0
MS.gene061919.t1 AT5G51760 27.500 240 123 8 71 291 144 351 5.02e-18 85.5
MS.gene061919.t1 AT2G40860 28.114 281 145 8 71 347 325 552 5.50e-18 85.9
MS.gene061919.t1 AT2G40860 28.114 281 145 8 71 347 423 650 6.06e-18 85.9
MS.gene061919.t1 AT3G62260 29.839 248 135 9 71 309 117 334 1.23e-17 84.0
MS.gene061919.t1 AT3G62260 29.839 248 135 9 71 309 116 333 1.46e-17 83.6
MS.gene061919.t1 AT3G16800 28.763 299 152 12 70 347 92 350 1.79e-17 83.2
MS.gene061919.t1 AT3G16800 28.763 299 152 12 70 347 92 350 1.79e-17 83.2
MS.gene061919.t1 AT3G16800 28.763 299 152 12 70 347 92 350 1.79e-17 83.2
MS.gene061919.t1 AT2G34740 28.571 273 149 10 44 314 96 324 1.92e-17 82.8
MS.gene061919.t1 AT2G25070 25.532 282 142 8 52 292 33 287 3.53e-17 82.4
MS.gene061919.t1 AT2G25070 25.532 282 142 8 52 292 33 287 3.53e-17 82.4
MS.gene061919.t1 AT5G59220 28.821 229 122 6 71 292 148 342 5.52e-17 82.4
MS.gene061919.t1 AT3G16800 30.252 238 116 9 122 347 56 255 5.73e-17 80.1
MS.gene061919.t1 AT3G16800 30.252 238 116 9 122 347 56 255 5.73e-17 80.1
MS.gene061919.t1 AT4G28400 29.091 220 109 8 66 281 62 238 6.21e-17 80.1
MS.gene061919.t1 AT1G72770 27.692 260 120 5 60 291 227 446 1.86e-16 81.3
MS.gene061919.t1 AT1G72770 27.692 260 120 5 60 291 227 446 1.86e-16 81.3
MS.gene061919.t1 AT1G72770 27.692 260 120 5 60 291 227 446 1.86e-16 81.3
MS.gene061919.t1 AT1G17550 26.923 312 150 12 71 348 237 504 3.05e-16 80.5
MS.gene061919.t1 AT1G17550 26.923 312 150 12 71 348 237 504 3.05e-16 80.5
MS.gene061919.t1 AT2G40860 27.823 248 138 7 71 311 423 636 3.39e-16 80.5
MS.gene061919.t1 AT2G34740 28.870 239 125 9 44 281 110 304 7.37e-16 78.2
MS.gene061919.t1 AT2G34740 28.870 239 125 9 44 281 92 286 8.09e-16 77.8
MS.gene061919.t1 AT1G18030 28.352 261 130 9 72 311 110 334 3.54e-15 76.3
MS.gene061919.t1 AT5G27930 27.575 301 152 14 71 344 92 353 3.84e-15 76.6
MS.gene061919.t1 AT5G27930 27.575 301 152 14 71 344 92 353 3.84e-15 76.6
MS.gene061919.t1 AT3G11410 24.706 255 133 7 71 308 137 349 4.80e-15 76.3
MS.gene061919.t1 AT3G05640 28.315 279 151 13 71 326 93 345 3.62e-14 73.6
MS.gene061919.t1 AT3G05640 28.315 279 151 13 71 326 93 345 3.62e-14 73.6
MS.gene061919.t1 AT3G05640 28.315 279 151 13 71 326 93 345 3.62e-14 73.6
MS.gene061919.t1 AT1G34750 28.226 248 127 9 38 281 37 237 4.29e-14 71.6
MS.gene061919.t1 AT5G26010 26.346 353 201 13 11 348 19 327 9.77e-14 72.0
MS.gene061919.t1 AT4G32950 26.351 296 166 12 64 348 65 319 1.18e-12 68.6

Find 83 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTATGAGTTCTGATTATT+TGG 0.094977 7.2:+11839652 MS.gene061919:CDS
TCTTTGCTTCTGATGGTTTA+TGG 0.141459 7.2:+11841277 MS.gene061919:CDS
TCACTCCTTGTTCAATCTTT+TGG 0.144007 7.2:-11841515 None:intergenic
GATTTGGGAAACCATCTTTA+TGG 0.196034 7.2:+11839563 MS.gene061919:CDS
GGTCCTCAAGGAACCTTTAT+AGG 0.223798 7.2:+11839674 MS.gene061919:CDS
CTTTGCTTCTGATGGTTTAT+GGG 0.228766 7.2:+11841278 MS.gene061919:CDS
TGAGAGCATACTCTTGAAAT+TGG 0.253266 7.2:-11839756 None:intergenic
ACTGAGAATTGGCTTGAAAA+AGG 0.264897 7.2:-11841202 None:intergenic
GAGCTATTATCAATCAGTTT+TGG 0.288253 7.2:-11841585 None:intergenic
ATTGTTATGGTACAAGGATT+TGG 0.289189 7.2:+11839547 MS.gene061919:CDS
TGAAGAAAGCAGAATTTAAC+AGG 0.297447 7.2:+11841145 MS.gene061919:CDS
TTGTTATGGTACAAGGATTT+GGG 0.311993 7.2:+11839548 MS.gene061919:CDS
AAGATGAGAAATTGATCTTC+AGG 0.326898 7.2:-11841258 None:intergenic
ACCATCATAAACACCTATAA+AGG 0.367844 7.2:-11839687 None:intergenic
AACCACAATCTGTGAATCAT+AGG 0.369310 7.2:-11840498 None:intergenic
CCTATGAGTTCTGATTATTT+GGG 0.385684 7.2:+11839653 MS.gene061919:CDS
TTTCTCATCTTTGCTTCTGA+TGG 0.394754 7.2:+11841270 MS.gene061919:CDS
ATCTGCTGGTACATGTTGTT+TGG 0.408579 7.2:+11840310 MS.gene061919:CDS
TTGAAAATTCACCATAAAGA+TGG 0.408650 7.2:-11839574 None:intergenic
AATTCAAGCAAATAGTTCAT+TGG 0.412793 7.2:+11839604 MS.gene061919:CDS
GAAGAGTGAGGAAGGGAACA+AGG 0.421093 7.2:+11840396 MS.gene061919:CDS
TTTCAGAAAAGGTTATCAAA+AGG 0.431288 7.2:+11840216 MS.gene061919:CDS
TGATTGATAATAGCTCTCTA+TGG 0.431364 7.2:+11841592 MS.gene061919:CDS
GGAGACTCAAGGGCTGTGTT+AGG 0.432476 7.2:+11840374 MS.gene061919:CDS
GGAAAGTTGATGGATTGTTA+TGG 0.432672 7.2:+11839534 MS.gene061919:CDS
GATGGCTCACTACTGAGAAT+TGG 0.433229 7.2:-11841213 None:intergenic
GATCGTAGCCAACTTGAATC+AGG 0.435753 7.2:+11839629 MS.gene061919:CDS
TAACGATATTCACAGCTACT+TGG 0.443990 7.2:-11841314 None:intergenic
CTTCAGATATGCATCACCTA+TGG 0.450543 7.2:-11841127 None:intergenic
TGATGGATTGTTATGGTACA+AGG 0.456025 7.2:+11839541 MS.gene061919:CDS
GCTGGTACATGTTGTTTGGC+AGG 0.456613 7.2:+11840314 MS.gene061919:CDS
TTCAGAAAAGGTTATCAAAA+GGG 0.466769 7.2:+11840217 MS.gene061919:CDS
AGATCAAGGGATTTCAGAAA+AGG 0.471446 7.2:+11840205 MS.gene061919:CDS
CACTCTGTTTGGCGTGTGAA+AGG 0.474473 7.2:+11840527 MS.gene061919:CDS
CCCAAATAATCAGAACTCAT+AGG 0.475948 7.2:-11839653 None:intergenic
TGTGTTAGGAAGAGTGAGGA+AGG 0.477652 7.2:+11840388 MS.gene061919:CDS
TGGTTATGAAACACTCTGTT+TGG 0.490832 7.2:+11840516 MS.gene061919:CDS
AAGAGTGAGGAAGGGAACAA+GGG 0.493346 7.2:+11840397 MS.gene061919:CDS
TGAGAAATTGATCTTCAGGT+TGG 0.496104 7.2:-11841254 None:intergenic
GATGTGAAAGGGAAAGTTGA+TGG 0.502197 7.2:+11839524 MS.gene061919:CDS
ACCTTTATAGGTGTTTATGA+TGG 0.502488 7.2:+11839686 MS.gene061919:CDS
TAGCAGGTTTCAAGATCCAT+AGG 0.507189 7.2:+11841111 MS.gene061919:intron
GGTGGTGATGGAGATGTGAA+AGG 0.507401 7.2:+11839512 MS.gene061919:CDS
CTGCCATCTCTGATTGAAAG+AGG 0.518398 7.2:-11841621 None:intergenic
GAAACGAAGCTTACATTGCG+TGG 0.519390 7.2:-11841345 None:intergenic
CTCTTTCAATCAGAGATGGC+AGG 0.520547 7.2:+11841622 MS.gene061919:CDS
TCCCTATGATTCACAGATTG+TGG 0.527683 7.2:+11840496 MS.gene061919:CDS
ATAGGTGTTTATGATGGTCA+TGG 0.527745 7.2:+11839692 MS.gene061919:CDS
AAACTGAGAGAGATGATGTT+CGG 0.531123 7.2:+11840465 MS.gene061919:CDS
CTGGTACATGTTGTTTGGCA+GGG 0.535327 7.2:+11840315 MS.gene061919:CDS
TCAAGCAAATAGTTCATTGG+AGG 0.537174 7.2:+11839607 MS.gene061919:CDS
TATCTATGACTATATCATGC+TGG 0.539611 7.2:+11839474 None:intergenic
CCAACTGTGGAGGGTGGTGA+TGG 0.541045 7.2:+11839500 MS.gene061919:CDS
TCTGATTATTTGGGTCCTCA+AGG 0.548992 7.2:+11839662 MS.gene061919:CDS
GCGTGTGAAAGGCATCATAC+AGG 0.551663 7.2:+11840538 MS.gene061919:CDS
CCATCACCACCCTCCACAGT+TGG 0.551816 7.2:-11839500 None:intergenic
TGTCTCTTGTGAAGAAGCAA+TGG 0.558482 7.2:+11840267 MS.gene061919:CDS
AGTCTAAACTTCTGTGGCAG+AGG 0.558697 7.2:-11841171 None:intergenic
GTGGTGATGGAGATGTGAAA+GGG 0.558872 7.2:+11839513 MS.gene061919:CDS
TTGCAAATGCAGGAGACTCA+AGG 0.563487 7.2:+11840363 MS.gene061919:CDS
TCTCCTCTTTCAATCAGAGA+TGG 0.566031 7.2:+11841618 MS.gene061919:CDS
TCATAGGTCCTGATTCAAGT+TGG 0.579655 7.2:-11839637 None:intergenic
CAATTACTGTAATATCATCA+TGG 0.580958 7.2:-11841548 None:intergenic
ACCACAATCTGTGAATCATA+GGG 0.581742 7.2:-11840497 None:intergenic
TGCTGGAAACCAACTGTGGA+GGG 0.585991 7.2:+11839491 MS.gene061919:CDS
TGCAAATGCAGGAGACTCAA+GGG 0.586962 7.2:+11840364 MS.gene061919:CDS
TCAGGTAGTCTAAACTTCTG+TGG 0.603011 7.2:-11841177 None:intergenic
ATGCTGTATATTGCAAATGC+AGG 0.610667 7.2:+11840353 MS.gene061919:CDS
AAACCACAGATAGCATCTGC+TGG 0.614223 7.2:+11840296 MS.gene061919:CDS
GACCTCCAAAAGATTGAACA+AGG 0.625989 7.2:+11841510 MS.gene061919:CDS
TTGGCAGGGATAATTTGCAA+TGG 0.628153 7.2:+11840329 MS.gene061919:CDS
AAAAGATTGAACAAGGAGTG+AGG 0.629700 7.2:+11841517 MS.gene061919:CDS
TCATGTAACAGGGAATAGCA+AGG 0.668087 7.2:+11841430 MS.gene061919:intron
ATGCTGGAAACCAACTGTGG+AGG 0.669407 7.2:+11839490 MS.gene061919:CDS
ATCATGCTGGAAACCAACTG+TGG 0.670384 7.2:+11839487 MS.gene061919:CDS
GTGTTAGGAAGAGTGAGGAA+GGG 0.687678 7.2:+11840389 MS.gene061919:CDS
GTACCAGCAGATGCTATCTG+TGG 0.690814 7.2:-11840299 None:intergenic
ACACCTATAAAGGTTCCTTG+AGG 0.699526 7.2:-11839677 None:intergenic
GGTGTTTATGATGGTCATGG+TGG 0.701467 7.2:+11839695 MS.gene061919:CDS
GGGCTGTGTTAGGAAGAGTG+AGG 0.729065 7.2:+11840384 MS.gene061919:CDS
GAAGAAAGCAGAATTTAACA+GGG 0.732756 7.2:+11841146 MS.gene061919:CDS
TGGAAACCAACTGTGGAGGG+TGG 0.737335 7.2:+11839494 MS.gene061919:CDS
TGTAACAGGGAATAGCAAGG+AGG 0.777684 7.2:+11841433 MS.gene061919:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATAAGATTTCT+AGG - chr7.2:11841029-11841048 None:intergenic 10.0%
!!! TTTTTTTTTAAGTTTCTATA+TGG + chr7.2:11841039-11841058 MS.gene061919:intron 10.0%
!!! ATTTTTTTTTTGTGTAAATC+AGG + chr7.2:11840170-11840189 MS.gene061919:intron 15.0%
!!! CTTTTATTACAAACATATAT+TGG + chr7.2:11839780-11839799 MS.gene061919:intron 15.0%
!!! TTTATTACTAAGTATGATTT+TGG + chr7.2:11840591-11840610 MS.gene061919:intron 15.0%
!! AAATCATCATATAAGAATAC+CGG - chr7.2:11840154-11840173 None:intergenic 20.0%
!! ACAAACATATATTGGAAATA+TGG + chr7.2:11839788-11839807 MS.gene061919:intron 20.0%
!! ACAAATCATAACAAGTTAAT+TGG - chr7.2:11840632-11840651 None:intergenic 20.0%
!! ATTATTGGTATATAAAACAC+CGG + chr7.2:11840132-11840151 MS.gene061919:intron 20.0%
!! TATGATTGAAATTATAGAGT+AGG + chr7.2:11840666-11840685 MS.gene061919:intron 20.0%
!! TTATATACCAATAATTACAG+CGG - chr7.2:11840127-11840146 None:intergenic 20.0%
!!! AGATTTCTAGGTAATATTAA+CGG - chr7.2:11841017-11841036 None:intergenic 20.0%
!!! ATTTTATGAATTGATACTGA+TGG - chr7.2:11841234-11841253 None:intergenic 20.0%
! AAGTTCTGTTAACACAAAAT+TGG - chr7.2:11841087-11841106 None:intergenic 25.0%
! AATTCAAGCAAATAGTTCAT+TGG + chr7.2:11839604-11839623 MS.gene061919:CDS 25.0%
! ACAAACTAATTGGTAAACTA+AGG + chr7.2:11840701-11840720 MS.gene061919:intron 25.0%
! CAAATCTTTCAGTATATGTT+CGG - chr7.2:11839997-11840016 None:intergenic 25.0%
! CAATTACTGTAATATCATCA+TGG - chr7.2:11841551-11841570 None:intergenic 25.0%
! CTATAATTTCAATCATACAG+TGG - chr7.2:11840663-11840682 None:intergenic 25.0%
! TAGTTGGATATAAAGTTACT+TGG - chr7.2:11839858-11839877 None:intergenic 25.0%
! TTCAGAAAAGGTTATCAAAA+GGG + chr7.2:11840217-11840236 MS.gene061919:CDS 25.0%
! TTCGTTTCTGTCAAAATTAA+AGG + chr7.2:11841360-11841379 MS.gene061919:intron 25.0%
! TTGAAAATTCACCATAAAGA+TGG - chr7.2:11839577-11839596 None:intergenic 25.0%
! TTTCAGAAAAGGTTATCAAA+AGG + chr7.2:11840216-11840235 MS.gene061919:CDS 25.0%
!! CATATGTTTTTCTTATGCAA+CGG + chr7.2:11840798-11840817 MS.gene061919:intron 25.0%
!! CGTAGTTTTTGTCAAAATTA+CGG - chr7.2:11839931-11839950 None:intergenic 25.0%
!! TCTTTATGGTGAATTTTCAA+TGG + chr7.2:11839577-11839596 MS.gene061919:CDS 25.0%
!!! TAAAGTTACTTGGTTTTTCT+AGG - chr7.2:11839848-11839867 None:intergenic 25.0%
!!! TTTCTGAAACAGTTGTAAAA+TGG + chr7.2:11840092-11840111 MS.gene061919:intron 25.0%
AAGATGAGAAATTGATCTTC+AGG - chr7.2:11841261-11841280 None:intergenic 30.0%
ACAACTATGATTCATGTAAC+AGG + chr7.2:11841419-11841438 MS.gene061919:intron 30.0%
ACCATCATAAACACCTATAA+AGG - chr7.2:11839690-11839709 None:intergenic 30.0%
ACCTTTATAGGTGTTTATGA+TGG + chr7.2:11839686-11839705 MS.gene061919:CDS 30.0%
ACTCTTGTGATTATGGAAAA+AGG - chr7.2:11839906-11839925 None:intergenic 30.0%
AGTTTGATCTTATAACCTCA+AGG + chr7.2:11840053-11840072 MS.gene061919:intron 30.0%
ATTAGCTGCAACAAACTAAT+TGG + chr7.2:11840691-11840710 MS.gene061919:intron 30.0%
ATTGTTATGGTACAAGGATT+TGG + chr7.2:11839547-11839566 MS.gene061919:CDS 30.0%
CAACTATGATTCATGTAACA+GGG + chr7.2:11841420-11841439 MS.gene061919:intron 30.0%
CACAAAATTGGAGTAACATA+TGG - chr7.2:11841075-11841094 None:intergenic 30.0%
GAAGAAAGCAGAATTTAACA+GGG + chr7.2:11841146-11841165 MS.gene061919:CDS 30.0%
GAATCGTAGTTAAATGTAGT+TGG + chr7.2:11840906-11840925 MS.gene061919:intron 30.0%
GCATAAGAAAAACATATGCT+GGG - chr7.2:11840796-11840815 None:intergenic 30.0%
GTTTGATCTTATAACCTCAA+GGG + chr7.2:11840054-11840073 MS.gene061919:intron 30.0%
TGAAGAAAGCAGAATTTAAC+AGG + chr7.2:11841145-11841164 MS.gene061919:CDS 30.0%
TGCATAAGAAAAACATATGC+TGG - chr7.2:11840797-11840816 None:intergenic 30.0%
TTGTTATGGTACAAGGATTT+GGG + chr7.2:11839548-11839567 MS.gene061919:CDS 30.0%
! AAAAACTCTGATAGTGTTTC+AGG + chr7.2:11840964-11840983 MS.gene061919:intron 30.0%
! ACCTATGAGTTCTGATTATT+TGG + chr7.2:11839652-11839671 MS.gene061919:CDS 30.0%
! CCTATGAGTTCTGATTATTT+GGG + chr7.2:11839653-11839672 MS.gene061919:CDS 30.0%
! GAGCTATTATCAATCAGTTT+TGG - chr7.2:11841588-11841607 None:intergenic 30.0%
! TGATTGATAATAGCTCTCTA+TGG + chr7.2:11841592-11841611 MS.gene061919:CDS 30.0%
!!! TTAACAGAACTTGTTTTAGC+AGG + chr7.2:11841095-11841114 MS.gene061919:intron 30.0%
AAAAGATTGAACAAGGAGTG+AGG + chr7.2:11841517-11841536 MS.gene061919:CDS 35.0%
AAACTGAGAGAGATGATGTT+CGG + chr7.2:11840465-11840484 MS.gene061919:CDS 35.0%
AACCACAATCTGTGAATCAT+AGG - chr7.2:11840501-11840520 None:intergenic 35.0%
AACCTTCAACCAAATGATTG+CGG + chr7.2:11840831-11840850 MS.gene061919:intron 35.0%
ACCACAATCTGTGAATCATA+GGG - chr7.2:11840500-11840519 None:intergenic 35.0%
AGAAAAACATATGCTGGGAA+AGG - chr7.2:11840791-11840810 None:intergenic 35.0%
AGATCAAGGGATTTCAGAAA+AGG + chr7.2:11840205-11840224 MS.gene061919:CDS 35.0%
ATAGGTGTTTATGATGGTCA+TGG + chr7.2:11839692-11839711 MS.gene061919:CDS 35.0%
ATCAAACTATTGCCAACTCT+AGG - chr7.2:11840041-11840060 None:intergenic 35.0%
ATGCTGTATATTGCAAATGC+AGG + chr7.2:11840353-11840372 MS.gene061919:CDS 35.0%
CATCATACAGGTACAAACTT+GGG + chr7.2:11840550-11840569 MS.gene061919:intron 35.0%
CCAAACATGCAGTTAATAGT+TGG - chr7.2:11839874-11839893 None:intergenic 35.0%
CCAACTATTAACTGCATGTT+TGG + chr7.2:11839871-11839890 MS.gene061919:intron 35.0%
CCCAAATAATCAGAACTCAT+AGG - chr7.2:11839656-11839675 None:intergenic 35.0%
CTTTGCTTCTGATGGTTTAT+GGG + chr7.2:11841278-11841297 MS.gene061919:CDS 35.0%
GATTTGGGAAACCATCTTTA+TGG + chr7.2:11839563-11839582 MS.gene061919:CDS 35.0%
GTTAGTACCGCTGTAATTAT+TGG + chr7.2:11840117-11840136 MS.gene061919:intron 35.0%
TAACGATATTCACAGCTACT+TGG - chr7.2:11841317-11841336 None:intergenic 35.0%
TCAAGCAAATAGTTCATTGG+AGG + chr7.2:11839607-11839626 MS.gene061919:CDS 35.0%
TCTTTGCTTCTGATGGTTTA+TGG + chr7.2:11841277-11841296 MS.gene061919:CDS 35.0%
TGAGAAATTGATCTTCAGGT+TGG - chr7.2:11841257-11841276 None:intergenic 35.0%
TGGTTATGAAACACTCTGTT+TGG + chr7.2:11840516-11840535 MS.gene061919:CDS 35.0%
TTTCTCATCTTTGCTTCTGA+TGG + chr7.2:11841270-11841289 MS.gene061919:CDS 35.0%
! GTTTTACAGCTGAAGATCAA+GGG + chr7.2:11840192-11840211 MS.gene061919:CDS 35.0%
! TCACTCCTTGTTCAATCTTT+TGG - chr7.2:11841518-11841537 None:intergenic 35.0%
! TGAGAGCATACTCTTGAAAT+TGG - chr7.2:11839759-11839778 None:intergenic 35.0%
! TTTTTCTTATGCAACGGTCA+AGG + chr7.2:11840804-11840823 MS.gene061919:intron 35.0%
!! ACTGAGAATTGGCTTGAAAA+AGG - chr7.2:11841205-11841224 None:intergenic 35.0%
!! AGTTGGTAGCCTTATAATTG+CGG + chr7.2:11840923-11840942 MS.gene061919:intron 35.0%
!! ATTGGCTTGAAAAAGGTTTC+AGG - chr7.2:11841198-11841217 None:intergenic 35.0%
!! GGAAAGTTGATGGATTGTTA+TGG + chr7.2:11839534-11839553 MS.gene061919:CDS 35.0%
!! TGATGGATTGTTATGGTACA+AGG + chr7.2:11839541-11839560 MS.gene061919:CDS 35.0%
ACACCTATAAAGGTTCCTTG+AGG - chr7.2:11839680-11839699 None:intergenic 40.0%
ACCTTCAACCAAATGATTGC+GGG + chr7.2:11840832-11840851 MS.gene061919:intron 40.0%
ATCTGCTGGTACATGTTGTT+TGG + chr7.2:11840310-11840329 MS.gene061919:CDS 40.0%
ATCTTATAACCTCAAGGGAC+GGG + chr7.2:11840059-11840078 MS.gene061919:intron 40.0%
CTTCAGATATGCATCACCTA+TGG - chr7.2:11841130-11841149 None:intergenic 40.0%
GACCTCCAAAAGATTGAACA+AGG + chr7.2:11841510-11841529 MS.gene061919:CDS 40.0%
GATCTTATAACCTCAAGGGA+CGG + chr7.2:11840058-11840077 MS.gene061919:intron 40.0%
GATGTGAAAGGGAAAGTTGA+TGG + chr7.2:11839524-11839543 MS.gene061919:CDS 40.0%
GCATCATACAGGTACAAACT+TGG + chr7.2:11840549-11840568 MS.gene061919:intron 40.0%
TAGCAGGTTTCAAGATCCAT+AGG + chr7.2:11841111-11841130 MS.gene061919:intron 40.0%
TCAGGTAGTCTAAACTTCTG+TGG - chr7.2:11841180-11841199 None:intergenic 40.0%
TCATAGGTCCTGATTCAAGT+TGG - chr7.2:11839640-11839659 None:intergenic 40.0%
TCATGTAACAGGGAATAGCA+AGG + chr7.2:11841430-11841449 MS.gene061919:intron 40.0%
TCCCTATGATTCACAGATTG+TGG + chr7.2:11840496-11840515 MS.gene061919:CDS 40.0%
TCTCCTCTTTCAATCAGAGA+TGG + chr7.2:11841618-11841637 MS.gene061919:CDS 40.0%
TCTGATTATTTGGGTCCTCA+AGG + chr7.2:11839662-11839681 MS.gene061919:CDS 40.0%
TGTCTCTTGTGAAGAAGCAA+TGG + chr7.2:11840267-11840286 MS.gene061919:CDS 40.0%
TTTCTGCGTCCGCAATTATA+AGG - chr7.2:11840935-11840954 None:intergenic 40.0%
! AGATTTGTTTCCTGTCCATG+AGG + chr7.2:11840010-11840029 MS.gene061919:intron 40.0%
! CTCCTTGTTCAATCTTTTGG+AGG - chr7.2:11841515-11841534 None:intergenic 40.0%
! GCATTTTCTGCAACAGATGA+TGG + chr7.2:11840239-11840258 MS.gene061919:CDS 40.0%
! GGTTTTACAGCTGAAGATCA+AGG + chr7.2:11840191-11840210 MS.gene061919:intron 40.0%
! TTGGCAGGGATAATTTGCAA+TGG + chr7.2:11840329-11840348 MS.gene061919:CDS 40.0%
AAACCACAGATAGCATCTGC+TGG + chr7.2:11840296-11840315 MS.gene061919:CDS 45.0%
AAGAGTGAGGAAGGGAACAA+GGG + chr7.2:11840397-11840416 MS.gene061919:CDS 45.0%
ACGCGGCAAGGTTTAAATTG+TGG + chr7.2:11840855-11840874 MS.gene061919:intron 45.0%
AGTCTAAACTTCTGTGGCAG+AGG - chr7.2:11841174-11841193 None:intergenic 45.0%
ATCATGCTGGAAACCAACTG+TGG + chr7.2:11839487-11839506 MS.gene061919:CDS 45.0%
CTCTTTCAATCAGAGATGGC+AGG + chr7.2:11841622-11841641 MS.gene061919:CDS 45.0%
CTGCCATCTCTGATTGAAAG+AGG - chr7.2:11841624-11841643 None:intergenic 45.0%
GAAACGAAGCTTACATTGCG+TGG - chr7.2:11841348-11841367 None:intergenic 45.0%
GATCGTAGCCAACTTGAATC+AGG + chr7.2:11839629-11839648 MS.gene061919:CDS 45.0%
GATGGCTCACTACTGAGAAT+TGG - chr7.2:11841216-11841235 None:intergenic 45.0%
GGTCCTCAAGGAACCTTTAT+AGG + chr7.2:11839674-11839693 MS.gene061919:CDS 45.0%
GGTGTTTATGATGGTCATGG+TGG + chr7.2:11839695-11839714 MS.gene061919:CDS 45.0%
GTGTTAGGAAGAGTGAGGAA+GGG + chr7.2:11840389-11840408 MS.gene061919:CDS 45.0%
TACGGCGACTCTTGTGATTA+TGG - chr7.2:11839913-11839932 None:intergenic 45.0%
TCCCGCAATCATTTGGTTGA+AGG - chr7.2:11840836-11840855 None:intergenic 45.0%
TCTTATAACCTCAAGGGACG+GGG + chr7.2:11840060-11840079 MS.gene061919:intron 45.0%
TGCAAATGCAGGAGACTCAA+GGG + chr7.2:11840364-11840383 MS.gene061919:CDS 45.0%
TGTAACAGGGAATAGCAAGG+AGG + chr7.2:11841433-11841452 MS.gene061919:intron 45.0%
TGTGTTAGGAAGAGTGAGGA+AGG + chr7.2:11840388-11840407 MS.gene061919:CDS 45.0%
TTGCAAATGCAGGAGACTCA+AGG + chr7.2:11840363-11840382 MS.gene061919:CDS 45.0%
! CTGGTACATGTTGTTTGGCA+GGG + chr7.2:11840315-11840334 MS.gene061919:CDS 45.0%
!! GTGGTGATGGAGATGTGAAA+GGG + chr7.2:11839513-11839532 MS.gene061919:CDS 45.0%
AACCAAATGATTGCGGGACG+CGG + chr7.2:11840838-11840857 MS.gene061919:intron 50.0%
AATTTGAACCCCGTCCCTTG+AGG - chr7.2:11840071-11840090 None:intergenic 50.0%
ATGCTGGAAACCAACTGTGG+AGG + chr7.2:11839490-11839509 MS.gene061919:CDS 50.0%
CAACTCTAGGCAACACCTCA+TGG - chr7.2:11840028-11840047 None:intergenic 50.0%
CACTCTGTTTGGCGTGTGAA+AGG + chr7.2:11840527-11840546 MS.gene061919:CDS 50.0%
GAAGAGTGAGGAAGGGAACA+AGG + chr7.2:11840396-11840415 MS.gene061919:CDS 50.0%
GTACCAGCAGATGCTATCTG+TGG - chr7.2:11840302-11840321 None:intergenic 50.0%
TGCTGGAAACCAACTGTGGA+GGG + chr7.2:11839491-11839510 MS.gene061919:CDS 50.0%
! GCTGGTACATGTTGTTTGGC+AGG + chr7.2:11840314-11840333 MS.gene061919:CDS 50.0%
!! CATGAGGTGTTGCCTAGAGT+TGG + chr7.2:11840026-11840045 MS.gene061919:intron 50.0%
!! GCGTGTGAAAGGCATCATAC+AGG + chr7.2:11840538-11840557 MS.gene061919:CDS 50.0%
!! GGTGGTGATGGAGATGTGAA+AGG + chr7.2:11839512-11839531 MS.gene061919:CDS 50.0%
CTAGGCAACACCTCATGGAC+AGG - chr7.2:11840023-11840042 None:intergenic 55.0%
GGAGACTCAAGGGCTGTGTT+AGG + chr7.2:11840374-11840393 MS.gene061919:CDS 55.0%
GGGCTGTGTTAGGAAGAGTG+AGG + chr7.2:11840384-11840403 MS.gene061919:CDS 55.0%
TGGAAACCAACTGTGGAGGG+TGG + chr7.2:11839494-11839513 MS.gene061919:CDS 55.0%
AATGATTGCGGGACGCGGCA+AGG + chr7.2:11840843-11840862 MS.gene061919:intron 60.0%
CCAACTGTGGAGGGTGGTGA+TGG + chr7.2:11839500-11839519 MS.gene061919:CDS 60.0%
CCATCACCACCCTCCACAGT+TGG - chr7.2:11839503-11839522 None:intergenic 60.0%
TAGTCTTCGCAGCTGCGTGC+AGG - chr7.2:11840731-11840750 None:intergenic 60.0%
TGCCGCGTCCCGCAATCATT+TGG - chr7.2:11840843-11840862 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 11839479 11841659 11839479 ID=MS.gene061919
chr7.2 mRNA 11839479 11841659 11839479 ID=MS.gene061919.t1;Parent=MS.gene061919
chr7.2 exon 11839479 11839767 11839479 ID=MS.gene061919.t1.exon1;Parent=MS.gene061919.t1
chr7.2 CDS 11839479 11839767 11839479 ID=cds.MS.gene061919.t1;Parent=MS.gene061919.t1
chr7.2 exon 11840192 11840559 11840192 ID=MS.gene061919.t1.exon2;Parent=MS.gene061919.t1
chr7.2 CDS 11840192 11840559 11840192 ID=cds.MS.gene061919.t1;Parent=MS.gene061919.t1
chr7.2 exon 11841117 11841353 11841117 ID=MS.gene061919.t1.exon3;Parent=MS.gene061919.t1
chr7.2 CDS 11841117 11841353 11841117 ID=cds.MS.gene061919.t1;Parent=MS.gene061919.t1
chr7.2 exon 11841441 11841659 11841441 ID=MS.gene061919.t1.exon4;Parent=MS.gene061919.t1
chr7.2 CDS 11841441 11841659 11841441 ID=cds.MS.gene061919.t1;Parent=MS.gene061919.t1
Gene Sequence

>MS.gene061919

ATGACTATATCATGCTGGAAACCAACTGTGGAGGGTGGTGATGGAGATGTGAAAGGGAAAGTTGATGGATTGTTATGGTACAAGGATTTGGGAAACCATCTTTATGGTGAATTTTCAATGGCTGTAATTCAAGCAAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCAGGACCTATGAGTTCTGATTATTTGGGTCCTCAAGGAACCTTTATAGGTGTTTATGATGGTCATGGTGGAACTGCAGCTGCTCAGTTTGTTAATGACAATCTATTCTCCAATTTCAAGAGTATGCTCTCAACTTTTATTACAAACATATATTGGAAATATGGATTTGCTGTACGATGTTTTTCAATTGAATTGAATCCTAGAAAAACCAAGTAACTTTATATCCAACTATTAACTGCATGTTTGGAATCACAGTCCTTTTTCCATAATCACAAGAGTCGCCGTAATTTTGACAAAAACTACGTATATGAAGCTTTAATTGTGATTTTGTCAAAATTATCGTGATTCCGAACATATACTGAAAGATTTGTTTCCTGTCCATGAGGTGTTGCCTAGAGTTGGCAATAGTTTGATCTTATAACCTCAAGGGACGGGGTTCAAATTCTTTCTGAAACAGTTGTAAAATGGTCGTTAGTACCGCTGTAATTATTGGTATATAAAACACCGGTATTCTTATATGATGATTTTTTTTTTGTGTAAATCAGGTTTTACAGCTGAAGATCAAGGGATTTCAGAAAAGGTTATCAAAAGGGCATTTTCTGCAACAGATGATGGTTTTCTGTCTCTTGTGAAGAAGCAATGGCAAAGCAAACCACAGATAGCATCTGCTGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGTATGCTGTATATTGCAAATGCAGGAGACTCAAGGGCTGTGTTAGGAAGAGTGAGGAAGGGAACAAGGGAAACATTAGCTGTTCAGTTATCTACTGAACACAATGTTAATATAGAAACTGAGAGAGATGATGTTCGGTCAAAGCATCCCTATGATTCACAGATTGTGGTTATGAAACACTCTGTTTGGCGTGTGAAAGGCATCATACAGGTACAAACTTGGGAGATTCATATTGCTTTTTTTTATTACTAAGTATGATTTTGGACTCTAGTAACACAACCAATTAACTTGTTATGATTTGTTATGATCTCCACTGTATGATTGAAATTATAGAGTAGGAAATTAGCTGCAACAAACTAATTGGTAAACTAAGGTATTCCTGCACGCAGCTGCGAAGACTAAACTCTCAAAGTAACTGAGATCTATTTAACAGATTGACCTTTCCCAGCATATGTTTTTCTTATGCAACGGTCAAGGATCGAACCTTCAACCAAATGATTGCGGGACGCGGCAAGGTTTAAATTGTGGTTGCAATTGCGATAGTTAATATTGTAGAGAATCGTAGTTAAATGTAGTTGGTAGCCTTATAATTGCGGACGCAGAAACATATGAAAAAAAACTCTGATAGTGTTTCAGGTTGCAGTCTCTGAATTTTTAGAATTTGCCGTTAATATTACCTAGAAATCTTATTTTTTTTTAAGTTTCTATATGGTAAATTAAAACCATATGTTACTCCAATTTTGTGTTAACAGAACTTGTTTTAGCAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAATTTAACAGGGAGCCTCTGCCACAGAAGTTTAGACTACCTGAAACCTTTTTCAAGCCAATTCTCAGTAGTGAGCCATCAGTATCAATTCATAAAATCCAACCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCATCTTAGCAACCAAGTAGCTGTGAATATCGTTAGCAACAATCCACGCAATGTAAGCTTCGTTTCTGTCAAAATTAAAGGATGTTTTTCTTTTTCTTATTTAAAAGCTCTTTTGTGACAACTATGATTCATGTAACAGGGAATAGCAAGGAGGCTTGTGAAAGCAGCACTTAAAGAAGCAGCGAAGAAGCGAGAAATAAGATTATCAGACCTCCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCATGATGATATTACAGTAATTGTTGTATATCTAAATCCAAAACTGATTGATAATAGCTCTCTATGGAGTTCTCCTCTTTCAATCAGAGATGGCAGGCATGTCAATTCCTAG
Protein sequence

>MS.gene061919.t1

MTISCWKPTVEGGDGDVKGKVDGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPMSSDYLGPQGTFIGVYDGHGGTAAAQFVNDNLFSNFKSFTAEDQGISEKVIKRAFSATDDGFLSLVKKQWQSKPQIASAGTCCLAGIICNGMLYIANAGDSRAVLGRVRKGTRETLAVQLSTEHNVNIETERDDVRSKHPYDSQIVVMKHSVWRVKGIIQVSRSIGDAYLKKAEFNREPLPQKFRLPETFFKPILSSEPSVSIHKIQPEDQFLIFASDGLWEHLSNQVAVNIVSNNPRNGIARRLVKAALKEAAKKREIRLSDLQKIEQGVRRHFHDDITVIVVYLNPKLIDNSSLWSSPLSIRDGRHVNS