Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062214.t1 | XP_013468810.2 | 99.6 | 265 | 1 | 0 | 1 | 265 | 25 | 289 | 2.10E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062214.t1 | Q949R4 | 63.8 | 265 | 92 | 3 | 3 | 263 | 4 | 268 | 8.9e-102 | 371.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062214.t1 | A0A072VM25 | 99.6 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 1.5e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049634 | MS.gene062214 | 0.820237 | 7.63E-53 | -1.69E-46 |
| MS.gene050173 | MS.gene062214 | 0.865554 | 5.43E-65 | -1.69E-46 |
| MS.gene05079 | MS.gene062214 | 0.838509 | 2.76E-57 | -1.69E-46 |
| MS.gene051138 | MS.gene062214 | 0.836842 | 7.38E-57 | -1.69E-46 |
| MS.gene05114 | MS.gene062214 | 0.817461 | 3.26E-52 | -1.69E-46 |
| MS.gene053488 | MS.gene062214 | 0.81439 | 1.58E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene062214 | 0.839285 | 1.74E-57 | -1.69E-46 |
| MS.gene054616 | MS.gene062214 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene062214 | 0.802769 | 4.79E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene062214 | 0.802393 | 5.73E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene062214 | 0.836504 | 9.00E-57 | -1.69E-46 |
| MS.gene059694 | MS.gene062214 | 0.826069 | 3.32E-54 | -1.69E-46 |
| MS.gene059697 | MS.gene062214 | 0.808653 | 2.79E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062214.t1 | MTR_1g077030 | 99.623 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 0.0 | 543 |
| MS.gene062214.t1 | MTR_6g064960 | 73.783 | 267 | 67 | 3 | 1 | 265 | 1 | 266 | 2.36e-146 | 410 |
| MS.gene062214.t1 | MTR_6g036660 | 64.921 | 191 | 36 | 2 | 76 | 265 | 9 | 169 | 1.30e-80 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062214.t1 | AT4G15093 | 64.314 | 255 | 87 | 3 | 3 | 253 | 4 | 258 | 2.83e-123 | 352 |
Find 79 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTCTGGCATTTGATTCC+TGG | 0.223358 | 1.1:-57724464 | MS.gene062214:CDS |
| TTCTTGTTATCTCTGGTCAT+TGG | 0.280377 | 1.1:-57725445 | MS.gene062214:CDS |
| TGCAGGAATTGTTTCATCTA+TGG | 0.287643 | 1.1:+57725520 | None:intergenic |
| CTTCCCATTGCATGTGGCTA+TGG | 0.326906 | 1.1:-57724123 | MS.gene062214:CDS |
| CCCTCCTCCTCCCTGGGCTC+TGG | 0.327725 | 1.1:-57724478 | MS.gene062214:CDS |
| TCTTGTTATCTCTGGTCATT+GGG | 0.336206 | 1.1:-57725444 | MS.gene062214:CDS |
| TTCACCCTCTTTGCTAACTT+TGG | 0.341100 | 1.1:+57724762 | None:intergenic |
| AACTTTGGAGCCCCTGGTGC+TGG | 0.357532 | 1.1:+57724777 | None:intergenic |
| ATTGTGATTAACAACGTTAA+CGG | 0.372671 | 1.1:+57725406 | None:intergenic |
| CATGTTATGAGTGGCACTTC+CGG | 0.373240 | 1.1:+57724524 | None:intergenic |
| GAGAAAGCCCTCCTCCTCCC+TGG | 0.379390 | 1.1:-57724485 | MS.gene062214:CDS |
| TTTGCTAACTTTGGAGCCCC+TGG | 0.388909 | 1.1:+57724771 | None:intergenic |
| AAGGAACTGATCGAAGCATC+TGG | 0.408387 | 1.1:-57724741 | MS.gene062214:CDS |
| GCCAGAGCCCAGGGAGGAGG+AGG | 0.408526 | 1.1:+57724477 | None:intergenic |
| AATGAAACCATCCATGATTT+CGG | 0.409867 | 1.1:-57725386 | MS.gene062214:CDS |
| TCTGCCATTCTTGTTATCTC+TGG | 0.410290 | 1.1:-57725452 | MS.gene062214:CDS |
| TATACCAGTATGTCAACTTT+CGG | 0.414509 | 1.1:-57724634 | MS.gene062214:CDS |
| TCGGTTTCATCAAATAGAAA+TGG | 0.415828 | 1.1:-57724615 | MS.gene062214:CDS |
| AAAACACCCTCATCTTTAAG+AGG | 0.419230 | 1.1:+57724558 | None:intergenic |
| TTCCCATTGCATGTGGCTAT+GGG | 0.428707 | 1.1:-57724122 | MS.gene062214:CDS |
| GGTACTTACCATTATAACTT+AGG | 0.430513 | 1.1:-57724594 | MS.gene062214:CDS |
| GGATGAGCCACTTTCGCATA+TGG | 0.439113 | 1.1:+57724161 | None:intergenic |
| CAAGGTTATTCATGAGAGTT+GGG | 0.452153 | 1.1:-57724075 | MS.gene062214:CDS |
| ACTCATAACATGAGAGCAAT+TGG | 0.455156 | 1.1:-57724513 | MS.gene062214:CDS |
| CCAAGGTTATTCATGAGAGT+TGG | 0.456924 | 1.1:-57724076 | MS.gene062214:CDS |
| ATTCATGAGAGTTGGGATAG+TGG | 0.458572 | 1.1:-57724068 | MS.gene062214:CDS |
| TAGGAAAACCACCGAAATCA+TGG | 0.461930 | 1.1:+57725375 | None:intergenic |
| TGATTAACAACGTTAACGGT+TGG | 0.472085 | 1.1:+57725410 | None:intergenic |
| GAAACCGAAAGTTGACATAC+TGG | 0.474557 | 1.1:+57724630 | None:intergenic |
| TGCAATGGGAAGAAATGATC+AGG | 0.474579 | 1.1:+57724134 | None:intergenic |
| AGAAAGCCCTCCTCCTCCCT+GGG | 0.482352 | 1.1:-57724484 | MS.gene062214:CDS |
| CAGCTCAAGTATCCAGCACC+AGG | 0.488701 | 1.1:-57724789 | MS.gene062214:CDS |
| GGAATCAAATGCCAGAGCCC+AGG | 0.488956 | 1.1:+57724467 | None:intergenic |
| CAAACCTTGTACATGCTCCT+AGG | 0.492861 | 1.1:+57725356 | None:intergenic |
| CTCCCATAGCCACATGCAAT+GGG | 0.493902 | 1.1:+57724120 | None:intergenic |
| AATGCCAGAGCCCAGGGAGG+AGG | 0.498803 | 1.1:+57724474 | None:intergenic |
| AGAATGGCAGATGGTCTCTC+AGG | 0.511823 | 1.1:+57725464 | None:intergenic |
| GCTCCCATAGCCACATGCAA+TGG | 0.521180 | 1.1:+57724119 | None:intergenic |
| CATGTGGCTATGGGAGCTGC+TGG | 0.535183 | 1.1:-57724113 | MS.gene062214:CDS |
| AAACACCCTCATCTTTAAGA+GGG | 0.538744 | 1.1:+57724559 | None:intergenic |
| CATACTGGTATATCAGCCTC+TGG | 0.544796 | 1.1:+57724645 | None:intergenic |
| GGCTCCAAAGTTAGCAAAGA+GGG | 0.544809 | 1.1:-57724766 | MS.gene062214:CDS |
| CGCTGCTGTGAAACCAAAAG+AGG | 0.555060 | 1.1:+57724031 | None:intergenic |
| CCAACTCTCATGAATAACCT+TGG | 0.556818 | 1.1:+57724076 | None:intergenic |
| AAGAATCTCTCGTCGAAGGA+AGG | 0.559361 | 1.1:-57724437 | MS.gene062214:intron |
| TCATTTCTTCCCATTGCATG+TGG | 0.560813 | 1.1:-57724129 | MS.gene062214:CDS |
| GAAGGCGCCATATGCGAAAG+TGG | 0.568307 | 1.1:-57724168 | MS.gene062214:CDS |
| ATGACCAGAGATAACAAGAA+TGG | 0.569073 | 1.1:+57725448 | None:intergenic |
| GTTTCATCTATGGCTAGTGT+TGG | 0.573056 | 1.1:+57725530 | None:intergenic |
| ATGCGAAAGTGGCTCATCCA+TGG | 0.576625 | 1.1:-57724157 | MS.gene062214:CDS |
| GGAGGAGGAGGGCTTTCTCG+AGG | 0.577926 | 1.1:+57724489 | None:intergenic |
| AGCATCTGGGTTGAGTCGAG+TGG | 0.579096 | 1.1:-57724727 | MS.gene062214:CDS |
| GAATCAAATGCCAGAGCCCA+GGG | 0.587952 | 1.1:+57724468 | None:intergenic |
| TGGTGAGAATTCAAAGGCCA+AGG | 0.591154 | 1.1:-57724093 | MS.gene062214:CDS |
| GGGAAGAAATGATCAGGCCA+TGG | 0.597088 | 1.1:+57724140 | None:intergenic |
| GAAACCATCCATGATTTCGG+TGG | 0.597978 | 1.1:-57725383 | MS.gene062214:CDS |
| CATAAATCACTACGAAGAGA+AGG | 0.601560 | 1.1:-57724186 | MS.gene062214:CDS |
| CCAGAGCCCAGGGAGGAGGA+GGG | 0.604544 | 1.1:+57724478 | None:intergenic |
| AGGAACTGATCGAAGCATCT+GGG | 0.606798 | 1.1:-57724740 | MS.gene062214:CDS |
| AAAGTTAGCAAAGAGGGTGA+AGG | 0.608328 | 1.1:-57724760 | MS.gene062214:CDS |
| AATAGCCCCTCTTAAAGATG+AGG | 0.611337 | 1.1:-57724565 | MS.gene062214:CDS |
| TTAAAAGAATCTCTCGTCGA+AGG | 0.612211 | 1.1:-57724441 | MS.gene062214:CDS |
| AACACCCTCATCTTTAAGAG+GGG | 0.616594 | 1.1:+57724560 | None:intergenic |
| TAGATGAAACAATTCCTGCA+TGG | 0.625784 | 1.1:-57725517 | MS.gene062214:CDS |
| AGCTGCTGGTGAGAATTCAA+AGG | 0.626345 | 1.1:-57724099 | MS.gene062214:CDS |
| ATAGCCCCTCTTAAAGATGA+GGG | 0.629215 | 1.1:-57724564 | MS.gene062214:CDS |
| TGCTCAATGTTCCAGATACG+AGG | 0.635008 | 1.1:-57724210 | MS.gene062214:intron |
| GTGGGCTTGATCATGGAACA+TGG | 0.640571 | 1.1:-57724689 | MS.gene062214:CDS |
| AAAACCACCGAAATCATGGA+TGG | 0.648531 | 1.1:+57725379 | None:intergenic |
| GCTCAAGTATCCAGCACCAG+GGG | 0.654006 | 1.1:-57724787 | MS.gene062214:CDS |
| AGCTCAAGTATCCAGCACCA+GGG | 0.658115 | 1.1:-57724788 | MS.gene062214:CDS |
| GAGATAACAAGAATGGCAGA+TGG | 0.658261 | 1.1:+57725455 | None:intergenic |
| AATTGCTCTCATGTTATGAG+TGG | 0.665609 | 1.1:+57724515 | None:intergenic |
| TCTCATGTTGATGTATCCAG+AGG | 0.674561 | 1.1:-57724661 | MS.gene062214:CDS |
| TCTGGATACATCAACATGAG+AGG | 0.675165 | 1.1:+57724663 | None:intergenic |
| GAAACGTTCTACATATCACA+TGG | 0.676009 | 1.1:-57725557 | MS.gene062214:CDS |
| GGGCTCCAAAGTTAGCAAAG+AGG | 0.677936 | 1.1:-57724767 | MS.gene062214:CDS |
| TGGGCTTGATCATGGAACAT+GGG | 0.724784 | 1.1:-57724688 | MS.gene062214:CDS |
| TCAAATGCCAGAGCCCAGGG+AGG | 0.758664 | 1.1:+57724471 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGATATAAAACAAAAA+TGG | + | chr1.1:57724759-57724778 | None:intergenic | 15.0% |
| !! | ATCTGACTTAAACAATTATT+AGG | + | chr1.1:57724600-57724619 | None:intergenic | 20.0% |
| !! | CAAGATTTATTCCATTAAAT+GGG | + | chr1.1:57724395-57724414 | None:intergenic | 20.0% |
| !!! | GCTACAATTTCTTAATTTTT+CGG | + | chr1.1:57724455-57724474 | None:intergenic | 20.0% |
| ! | AAGAAATTGTAGCAATAGAT+TGG | - | chr1.1:57724462-57724481 | MS.gene062214:CDS | 25.0% |
| ! | ATTACATCTTGAAATTTGAG+CGG | - | chr1.1:57724321-57724340 | MS.gene062214:intron | 25.0% |
| ! | ATTGTGATTAACAACGTTAA+CGG | + | chr1.1:57724188-57724207 | None:intergenic | 25.0% |
| ! | CCAAGATTTATTCCATTAAA+TGG | + | chr1.1:57724396-57724415 | None:intergenic | 25.0% |
| ! | CCATTTAATGGAATAAATCT+TGG | - | chr1.1:57724393-57724412 | MS.gene062214:intron | 25.0% |
| ! | TTTATTCCATTAAATGGGAT+CGG | + | chr1.1:57724390-57724409 | None:intergenic | 25.0% |
| !!! | TTGCTTTTCCTAAGTTATAA+TGG | + | chr1.1:57725008-57725027 | None:intergenic | 25.0% |
| AAAACAAAAATGGACCATTG+TGG | + | chr1.1:57724749-57724768 | None:intergenic | 30.0% | |
| AATGAAACCATCCATGATTT+CGG | - | chr1.1:57724205-57724224 | MS.gene062214:intron | 30.0% | |
| CTATTGAATCATAACTGATC+CGG | - | chr1.1:57724560-57724579 | MS.gene062214:CDS | 30.0% | |
| GATTGGATAAACAAACATTG+AGG | - | chr1.1:57724479-57724498 | MS.gene062214:CDS | 30.0% | |
| GCATACATTACACATTAGAT+TGG | - | chr1.1:57724521-57724540 | MS.gene062214:CDS | 30.0% | |
| GGTACTTACCATTATAACTT+AGG | - | chr1.1:57724997-57725016 | MS.gene062214:intron | 30.0% | |
| TAGCTCTTCAATTGATACTT+AGG | + | chr1.1:57724696-57724715 | None:intergenic | 30.0% | |
| TATACCAGTATGTCAACTTT+CGG | - | chr1.1:57724957-57724976 | MS.gene062214:intron | 30.0% | |
| TATTGAATCATAACTGATCC+GGG | - | chr1.1:57724561-57724580 | MS.gene062214:CDS | 30.0% | |
| TCGGTTTCATCAAATAGAAA+TGG | - | chr1.1:57724976-57724995 | MS.gene062214:intron | 30.0% | |
| ! | CATGGAAATTTTTGACATCA+TGG | - | chr1.1:57724092-57724111 | MS.gene062214:CDS | 30.0% |
| ! | GAAATTTTTGACATCATGGA+AGG | - | chr1.1:57724096-57724115 | MS.gene062214:CDS | 30.0% |
| !! | ATAGTTGCTATTTGACAACA+TGG | + | chr1.1:57725223-57725242 | None:intergenic | 30.0% |
| !!! | GATGAGGGTGTTTTAATAAT+CGG | - | chr1.1:57725042-57725061 | MS.gene062214:intron | 30.0% |
| !!! | TTTCGGTATCGATTTGTTTT+TGG | - | chr1.1:57724656-57724675 | MS.gene062214:CDS | 30.0% |
| AAAACACCCTCATCTTTAAG+AGG | + | chr1.1:57725036-57725055 | None:intergenic | 35.0% | |
| AAATAGCAACTATAGCGTAG+TGG | - | chr1.1:57725230-57725249 | MS.gene062214:intron | 35.0% | |
| AATTGCTCTCATGTTATGAG+TGG | + | chr1.1:57725079-57725098 | None:intergenic | 35.0% | |
| ACTCATAACATGAGAGCAAT+TGG | - | chr1.1:57725078-57725097 | MS.gene062214:intron | 35.0% | |
| ATGACCAGAGATAACAAGAA+TGG | + | chr1.1:57724146-57724165 | None:intergenic | 35.0% | |
| CAAGGTTATTCATGAGAGTT+GGG | - | chr1.1:57725516-57725535 | MS.gene062214:CDS | 35.0% | |
| CATAAATCACTACGAAGAGA+AGG | - | chr1.1:57725405-57725424 | MS.gene062214:CDS | 35.0% | |
| GAAACGTTCTACATATCACA+TGG | - | chr1.1:57724034-57724053 | MS.gene062214:CDS | 35.0% | |
| GAAACTAGAGTCCAATCATT+CGG | + | chr1.1:57724640-57724659 | None:intergenic | 35.0% | |
| GATACTTGAGCTGCAAATAA+AGG | + | chr1.1:57724795-57724814 | None:intergenic | 35.0% | |
| GATGTCAAAAATTTCCATGC+AGG | + | chr1.1:57724091-57724110 | None:intergenic | 35.0% | |
| TAGATGAAACAATTCCTGCA+TGG | - | chr1.1:57724074-57724093 | MS.gene062214:CDS | 35.0% | |
| TGATTAACAACGTTAACGGT+TGG | + | chr1.1:57724184-57724203 | None:intergenic | 35.0% | |
| TGCAGGAATTGTTTCATCTA+TGG | + | chr1.1:57724074-57724093 | None:intergenic | 35.0% | |
| TGGACGAAGATAAAAAACGT+GGG | - | chr1.1:57724884-57724903 | MS.gene062214:intron | 35.0% | |
| TTAAAAGAATCTCTCGTCGA+AGG | - | chr1.1:57725150-57725169 | MS.gene062214:intron | 35.0% | |
| TTAAGTCAGATTCCGAACTT+TGG | - | chr1.1:57724609-57724628 | MS.gene062214:CDS | 35.0% | |
| TTGTTCTGTGATACGTGATT+TGG | - | chr1.1:57725271-57725290 | MS.gene062214:intron | 35.0% | |
| TTTCGGTTCTCAAACAGATT+TGG | + | chr1.1:57724438-57724457 | None:intergenic | 35.0% | |
| ! | AAACACCCTCATCTTTAAGA+GGG | + | chr1.1:57725035-57725054 | None:intergenic | 35.0% |
| ! | ATTTTTGACATCATGGAAGG+AGG | - | chr1.1:57724099-57724118 | MS.gene062214:CDS | 35.0% |
| ! | GAATGATTGGACTCTAGTTT+CGG | - | chr1.1:57724639-57724658 | MS.gene062214:CDS | 35.0% |
| ! | TCTTGTTATCTCTGGTCATT+GGG | - | chr1.1:57724147-57724166 | MS.gene062214:CDS | 35.0% |
| ! | TTCTTGTTATCTCTGGTCAT+TGG | - | chr1.1:57724146-57724165 | MS.gene062214:CDS | 35.0% |
| !! | GCTTTTTCTTATGCCTCTTT+TGG | - | chr1.1:57725547-57725566 | MS.gene062214:CDS | 35.0% |
| !!! | GGTGTTTTAATAATCGGATC+CGG | - | chr1.1:57725048-57725067 | MS.gene062214:intron | 35.0% |
| AAAAAACGTGGGCTTGATCA+TGG | - | chr1.1:57724895-57724914 | MS.gene062214:intron | 40.0% | |
| AAAACCACCGAAATCATGGA+TGG | + | chr1.1:57724215-57724234 | None:intergenic | 40.0% | |
| AAAGTTAGCAAAGAGGGTGA+AGG | - | chr1.1:57724831-57724850 | MS.gene062214:intron | 40.0% | |
| AATAAATCTTGGTTGTGCGC+TGG | - | chr1.1:57724404-57724423 | MS.gene062214:intron | 40.0% | |
| AATAGCCCCTCTTAAAGATG+AGG | - | chr1.1:57725026-57725045 | MS.gene062214:intron | 40.0% | |
| ATAGCCCCTCTTAAAGATGA+GGG | - | chr1.1:57725027-57725046 | MS.gene062214:intron | 40.0% | |
| ATTCATGAGAGTTGGGATAG+TGG | - | chr1.1:57725523-57725542 | MS.gene062214:CDS | 40.0% | |
| CCAACTCTCATGAATAACCT+TGG | + | chr1.1:57725518-57725537 | None:intergenic | 40.0% | |
| CCAAGGTTATTCATGAGAGT+TGG | - | chr1.1:57725515-57725534 | MS.gene062214:CDS | 40.0% | |
| GAAACCGAAAGTTGACATAC+TGG | + | chr1.1:57724964-57724983 | None:intergenic | 40.0% | |
| GAGATAACAAGAATGGCAGA+TGG | + | chr1.1:57724139-57724158 | None:intergenic | 40.0% | |
| GTGATTTATGTCCTCGTATC+TGG | + | chr1.1:57725395-57725414 | None:intergenic | 40.0% | |
| GTGGACGAAGATAAAAAACG+TGG | - | chr1.1:57724883-57724902 | MS.gene062214:intron | 40.0% | |
| GTTTCATCTATGGCTAGTGT+TGG | + | chr1.1:57724064-57724083 | None:intergenic | 40.0% | |
| TAGGAAAACCACCGAAATCA+TGG | + | chr1.1:57724219-57724238 | None:intergenic | 40.0% | |
| TCATTTCTTCCCATTGCATG+TGG | - | chr1.1:57725462-57725481 | MS.gene062214:CDS | 40.0% | |
| TCTCATGTTGATGTATCCAG+AGG | - | chr1.1:57724930-57724949 | MS.gene062214:intron | 40.0% | |
| TCTGGATACATCAACATGAG+AGG | + | chr1.1:57724931-57724950 | None:intergenic | 40.0% | |
| TGAGCTGCAAATAAAGGAAC+AGG | + | chr1.1:57724789-57724808 | None:intergenic | 40.0% | |
| TGCAATGGGAAGAAATGATC+AGG | + | chr1.1:57725460-57725479 | None:intergenic | 40.0% | |
| TTCACCCTCTTTGCTAACTT+TGG | + | chr1.1:57724832-57724851 | None:intergenic | 40.0% | |
| ! | AACACCCTCATCTTTAAGAG+GGG | + | chr1.1:57725034-57725053 | None:intergenic | 40.0% |
| ! | ATGATTTCGGTGGTTTTCCT+AGG | - | chr1.1:57724218-57724237 | MS.gene062214:intron | 40.0% |
| ! | GACGAGAGATTCTTTTAACC+AGG | + | chr1.1:57725148-57725167 | None:intergenic | 40.0% |
| ! | GTTTTCCAATCTCTCCACAA+TGG | - | chr1.1:57724732-57724751 | MS.gene062214:CDS | 40.0% |
| ! | TCTGCCATTCTTGTTATCTC+TGG | - | chr1.1:57724139-57724158 | MS.gene062214:CDS | 40.0% |
| !! | TTTTCCTAGGAGCATGTACA+AGG | - | chr1.1:57724231-57724250 | MS.gene062214:intron | 40.0% |
| AAGAATCTCTCGTCGAAGGA+AGG | - | chr1.1:57725154-57725173 | MS.gene062214:intron | 45.0% | |
| ACTAGAGTCCAATCATTCGG+TGG | + | chr1.1:57724637-57724656 | None:intergenic | 45.0% | |
| AGCTGCTGGTGAGAATTCAA+AGG | - | chr1.1:57725492-57725511 | MS.gene062214:CDS | 45.0% | |
| ATGGACCATTGTGGAGAGAT+TGG | + | chr1.1:57724740-57724759 | None:intergenic | 45.0% | |
| CAAACCTTGTACATGCTCCT+AGG | + | chr1.1:57724238-57724257 | None:intergenic | 45.0% | |
| CATACTGGTATATCAGCCTC+TGG | + | chr1.1:57724949-57724968 | None:intergenic | 45.0% | |
| CATGTTATGAGTGGCACTTC+CGG | + | chr1.1:57725070-57725089 | None:intergenic | 45.0% | |
| GAAACCATCCATGATTTCGG+TGG | - | chr1.1:57724208-57724227 | MS.gene062214:intron | 45.0% | |
| GGCTCCAAAGTTAGCAAAGA+GGG | - | chr1.1:57724825-57724844 | MS.gene062214:intron | 45.0% | |
| GTGTAGCCGATCCCATTTAA+TGG | - | chr1.1:57724381-57724400 | MS.gene062214:intron | 45.0% | |
| TGCTCAATGTTCCAGATACG+AGG | - | chr1.1:57725381-57725400 | MS.gene062214:CDS | 45.0% | |
| TGGGCTTGATCATGGAACAT+GGG | - | chr1.1:57724903-57724922 | MS.gene062214:intron | 45.0% | |
| TGGTGAGAATTCAAAGGCCA+AGG | - | chr1.1:57725498-57725517 | MS.gene062214:CDS | 45.0% | |
| TGTTGTCAAACTGCAGCTAG+TGG | - | chr1.1:57725301-57725320 | MS.gene062214:intron | 45.0% | |
| TTAGGCCATCTTTGCTTACC+CGG | + | chr1.1:57724582-57724601 | None:intergenic | 45.0% | |
| TTCCCATTGCATGTGGCTAT+GGG | - | chr1.1:57725469-57725488 | MS.gene062214:CDS | 45.0% | |
| ! | AAGGAACTGATCGAAGCATC+TGG | - | chr1.1:57724850-57724869 | MS.gene062214:intron | 45.0% |
| ! | AGGAACTGATCGAAGCATCT+GGG | - | chr1.1:57724851-57724870 | MS.gene062214:intron | 45.0% |
| ! | CATTCGGTGGAACCAAAGTT+CGG | + | chr1.1:57724624-57724643 | None:intergenic | 45.0% |
| ! | CTTTGGTTCCACCGAATGAT+TGG | - | chr1.1:57724626-57724645 | MS.gene062214:CDS | 45.0% |
| AGAATGGCAGATGGTCTCTC+AGG | + | chr1.1:57724130-57724149 | None:intergenic | 50.0% | |
| AGCTCAAGTATCCAGCACCA+GGG | - | chr1.1:57724803-57724822 | MS.gene062214:intron | 50.0% | |
| ATGCGAAAGTGGCTCATCCA+TGG | - | chr1.1:57725434-57725453 | MS.gene062214:CDS | 50.0% | |
| CGCTGCTGTGAAACCAAAAG+AGG | + | chr1.1:57725563-57725582 | None:intergenic | 50.0% | |
| CTCCCATAGCCACATGCAAT+GGG | + | chr1.1:57725474-57725493 | None:intergenic | 50.0% | |
| CTGATCCGGGTAAGCAAAGA+TGG | - | chr1.1:57724574-57724593 | MS.gene062214:CDS | 50.0% | |
| CTTCCCATTGCATGTGGCTA+TGG | - | chr1.1:57725468-57725487 | MS.gene062214:CDS | 50.0% | |
| GAATCAAATGCCAGAGCCCA+GGG | + | chr1.1:57725126-57725145 | None:intergenic | 50.0% | |
| GGGAAGAAATGATCAGGCCA+TGG | + | chr1.1:57725454-57725473 | None:intergenic | 50.0% | |
| GGGCTCCAAAGTTAGCAAAG+AGG | - | chr1.1:57724824-57724843 | MS.gene062214:intron | 50.0% | |
| GTGGGCTTGATCATGGAACA+TGG | - | chr1.1:57724902-57724921 | MS.gene062214:intron | 50.0% | |
| ! | GGATGAGCCACTTTCGCATA+TGG | + | chr1.1:57725433-57725452 | None:intergenic | 50.0% |
| !! | TTTGCTAACTTTGGAGCCCC+TGG | + | chr1.1:57724823-57724842 | None:intergenic | 50.0% |
| CAGCTCAAGTATCCAGCACC+AGG | - | chr1.1:57724802-57724821 | MS.gene062214:intron | 55.0% | |
| GCTCAAGTATCCAGCACCAG+GGG | - | chr1.1:57724804-57724823 | MS.gene062214:intron | 55.0% | |
| GCTCCCATAGCCACATGCAA+TGG | + | chr1.1:57725475-57725494 | None:intergenic | 55.0% | |
| GGAATCAAATGCCAGAGCCC+AGG | + | chr1.1:57725127-57725146 | None:intergenic | 55.0% | |
| ! | AGCATCTGGGTTGAGTCGAG+TGG | - | chr1.1:57724864-57724883 | MS.gene062214:intron | 55.0% |
| ! | GGGCTCTGGCATTTGATTCC+TGG | - | chr1.1:57725127-57725146 | MS.gene062214:intron | 55.0% |
| !! | GAAGGCGCCATATGCGAAAG+TGG | - | chr1.1:57725423-57725442 | MS.gene062214:CDS | 55.0% |
| AGAAAGCCCTCCTCCTCCCT+GGG | - | chr1.1:57725107-57725126 | MS.gene062214:intron | 60.0% | |
| CATGTGGCTATGGGAGCTGC+TGG | - | chr1.1:57725478-57725497 | MS.gene062214:CDS | 60.0% | |
| TCAAATGCCAGAGCCCAGGG+AGG | + | chr1.1:57725123-57725142 | None:intergenic | 60.0% | |
| !! | AACTTTGGAGCCCCTGGTGC+TGG | + | chr1.1:57724817-57724836 | None:intergenic | 60.0% |
| AATGCCAGAGCCCAGGGAGG+AGG | + | chr1.1:57725120-57725139 | None:intergenic | 65.0% | |
| GAGAAAGCCCTCCTCCTCCC+TGG | - | chr1.1:57725106-57725125 | MS.gene062214:intron | 65.0% | |
| GGAGGAGGAGGGCTTTCTCG+AGG | + | chr1.1:57725105-57725124 | None:intergenic | 65.0% | |
| CCAGAGCCCAGGGAGGAGGA+GGG | + | chr1.1:57725116-57725135 | None:intergenic | 70.0% | |
| CCCTCCTCCTCCCTGGGCTC+TGG | - | chr1.1:57725113-57725132 | MS.gene062214:intron | 75.0% | |
| GCCAGAGCCCAGGGAGGAGG+AGG | + | chr1.1:57725117-57725136 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 57724022 | 57725591 | 57724022 | ID=MS.gene062214 |
| chr1.1 | mRNA | 57724022 | 57725591 | 57724022 | ID=MS.gene062214.t1;Parent=MS.gene062214 |
| chr1.1 | exon | 57725361 | 57725591 | 57725361 | ID=MS.gene062214.t1.exon1;Parent=MS.gene062214.t1 |
| chr1.1 | CDS | 57725361 | 57725591 | 57725361 | ID=cds.MS.gene062214.t1;Parent=MS.gene062214.t1 |
| chr1.1 | exon | 57724438 | 57724808 | 57724438 | ID=MS.gene062214.t1.exon2;Parent=MS.gene062214.t1 |
| chr1.1 | CDS | 57724438 | 57724808 | 57724438 | ID=cds.MS.gene062214.t1;Parent=MS.gene062214.t1 |
| chr1.1 | exon | 57724022 | 57724217 | 57724022 | ID=MS.gene062214.t1.exon3;Parent=MS.gene062214.t1 |
| chr1.1 | CDS | 57724022 | 57724217 | 57724022 | ID=cds.MS.gene062214.t1;Parent=MS.gene062214.t1 |
| Gene Sequence |
| Protein sequence |
